AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00402.t1 MTR_2g035430 98.120 585 11 0 1 585 7 591 0.0 1185
MS.gene00402.t1 MTR_8g461380 62.186 558 210 1 8 565 21 577 0.0 697
MS.gene00402.t1 MTR_8g089320 57.043 575 247 0 7 581 13 587 0.0 681
MS.gene00402.t1 MTR_1g030660 57.398 561 234 2 22 578 23 582 0.0 676
MS.gene00402.t1 MTR_8g089360 57.093 571 243 2 14 583 25 594 0.0 669
MS.gene00402.t1 MTR_8g089360 57.093 571 243 2 14 583 8 577 0.0 669
MS.gene00402.t1 MTR_8g089340 56.136 440 192 1 143 581 1 440 1.74e-166 482
MS.gene00402.t1 MTR_1g111740 40.830 578 314 5 22 579 6 575 8.24e-148 439
MS.gene00402.t1 MTR_4g099270 41.210 529 298 5 54 573 10 534 4.49e-126 382
MS.gene00402.t1 MTR_4g099270 42.559 383 216 2 28 406 5 387 8.51e-99 306
MS.gene00402.t1 MTR_4g099270 39.671 426 244 5 157 573 1 422 4.76e-93 293
MS.gene00402.t1 MTR_6g034535 59.912 227 83 2 355 574 89 314 1.31e-85 269
MS.gene00402.t1 MTR_6g034535 39.604 101 36 1 92 192 19 94 3.18e-13 71.2
MS.gene00402.t1 MTR_4g099270 41.722 302 172 2 28 325 5 306 1.96e-71 232
MS.gene00402.t1 MTR_6g027630 33.412 422 269 6 28 440 6 424 7.38e-69 233
MS.gene00402.t1 MTR_6g027630 33.412 422 269 6 28 440 6 424 1.81e-68 233
MS.gene00402.t1 MTR_6g027660 31.754 422 275 4 26 440 10 425 3.90e-67 230
MS.gene00402.t1 MTR_6g027680 31.090 431 283 4 18 440 3 427 1.36e-66 227
MS.gene00402.t1 MTR_7g086610 31.884 414 262 4 37 440 10 413 2.55e-66 228
MS.gene00402.t1 MTR_7g007850 30.829 519 343 10 59 566 42 555 6.21e-66 225
MS.gene00402.t1 MTR_7g086510 31.472 394 263 3 54 440 26 419 8.76e-65 224
MS.gene00402.t1 MTR_6g027650 31.190 420 274 4 28 440 6 417 3.60e-64 222
MS.gene00402.t1 MTR_7g007850 29.588 534 338 9 59 555 42 574 1.56e-63 219
MS.gene00402.t1 MTR_7g007850 33.249 397 256 7 59 449 42 435 9.23e-58 201
MS.gene00402.t1 MTR_7g007850 33.249 397 256 7 59 449 42 435 1.49e-57 202
MS.gene00402.t1 MTR_6g027630 33.136 338 217 4 111 440 3 339 4.53e-53 190
MS.gene00402.t1 MTR_8g089342 65.812 117 40 0 16 132 23 139 4.53e-49 167
MS.gene00402.t1 MTR_6g027670 31.646 158 108 0 283 440 1 158 2.36e-24 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00402.t1 AT2G34960 73.619 561 146 2 7 566 5 564 0.0 859
MS.gene00402.t1 AT4G21120 61.837 566 216 0 3 568 7 572 0.0 735
MS.gene00402.t1 AT1G17120 62.057 564 213 1 2 565 17 579 0.0 722
MS.gene00402.t1 AT4G21120 59.953 422 169 0 147 568 1 422 0.0 530
MS.gene00402.t1 AT3G10600 42.629 563 289 6 21 561 11 561 1.96e-142 425
MS.gene00402.t1 AT5G04770 41.591 553 303 5 24 561 15 562 4.27e-142 424
MS.gene00402.t1 AT5G04770 43.152 387 210 2 24 400 15 401 2.94e-104 321
MS.gene00402.t1 AT3G10600 41.920 427 214 6 157 561 1 415 1.70e-103 320
MS.gene00402.t1 AT5G04770 41.190 420 227 5 157 561 1 415 5.45e-98 305
MS.gene00402.t1 AT3G03720 27.045 599 362 12 48 579 6 596 8.11e-69 234
MS.gene00402.t1 AT5G36940 32.918 401 258 3 49 442 16 412 7.88e-68 231
MS.gene00402.t1 AT1G05940 27.986 561 371 9 35 571 14 565 1.05e-63 219
MS.gene00402.t1 AT1G58030 30.751 413 273 5 36 440 14 421 1.46e-63 220
MS.gene00402.t1 AT1G05940 27.853 517 341 8 35 528 14 521 2.01e-56 199
MS.gene00402.t1 AT1G05940 28.918 453 306 6 35 472 14 465 2.39e-56 198
MS.gene00402.t1 AT1G05940 27.069 447 298 6 145 571 9 447 7.51e-45 165

Find 94 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGGGAATTTCAGCTTAT+TGG 0.124964 2.2:+50953929 MS.gene00402:CDS
TCAATTGGTGGGACCTAATT+TGG 0.164490 2.2:+50952744 MS.gene00402:CDS
AATGGGAATTTCAGCTTATT+GGG 0.215067 2.2:+50953930 MS.gene00402:CDS
GATGATATCCATTGCACTTT+TGG 0.225184 2.2:+50953822 MS.gene00402:CDS
CACATCCAAGCTAGTGAAAA+AGG 0.259938 2.2:-50953758 None:intergenic
AGTCGCCTAATTCAATTCTT+AGG 0.284521 2.2:-50952949 None:intergenic
ACACTGTTACTGTTCCTATT+TGG 0.284631 2.2:+50953980 MS.gene00402:CDS
GCAAAATATGTAGTAGCTTT+TGG 0.291066 2.2:+50953562 MS.gene00402:CDS
CCCTATAGCAGTTGGTGTTC+TGG 0.294221 2.2:+50953135 MS.gene00402:CDS
TTCAGAAAGTTGGAATGAAT+TGG 0.299542 2.2:+50953539 MS.gene00402:CDS
TCTACATTCAACTTATGATA+TGG 0.303089 2.2:+50954200 MS.gene00402:CDS
CTCATTGTTGCTTCTTCAAT+GGG 0.303127 2.2:+50953913 MS.gene00402:CDS
GTAAGAAGGTATTATGTTAG+AGG 0.322508 2.2:+50953844 MS.gene00402:CDS
GCAATTCTTTACTTTGCATA+TGG 0.325124 2.2:+50953337 MS.gene00402:CDS
TTGATTCGAAGCGAATCTTT+TGG 0.333880 2.2:-50953076 None:intergenic
GATATACCAATCGGCTTGAT+TGG 0.334574 2.2:+50953412 MS.gene00402:CDS
AGCAAAGGAAGCCAAAGTTT+TGG 0.341150 2.2:+50954040 MS.gene00402:CDS
GCCTACCTAAGAATTGAATT+AGG 0.344020 2.2:+50952944 MS.gene00402:CDS
ATCATATTCGTAATCATTGC+AGG 0.347703 2.2:+50953241 MS.gene00402:CDS
CTCTTTCACAAACATGGTTA+AGG 0.349691 2.2:+50952633 MS.gene00402:CDS
CATCTCCAATAGCTTCTTTG+TGG 0.353269 2.2:-50952551 None:intergenic
TCTCATTGTTGCTTCTTCAA+TGG 0.355395 2.2:+50953912 MS.gene00402:CDS
AACAGTTATATATTGCTTGA+TGG 0.367904 2.2:+50953450 MS.gene00402:CDS
GACCTAATTTGGTTTGGCTT+TGG 0.371810 2.2:+50952755 MS.gene00402:CDS
TCAGTTGCATTTCAGAAAGT+TGG 0.376841 2.2:+50953529 MS.gene00402:CDS
CACCAAAGCCAAACCAAATT+AGG 0.385473 2.2:-50952757 None:intergenic
ACCAGAACACCAACTGCTAT+AGG 0.387682 2.2:-50953136 None:intergenic
CTCAGTGGCATCGTCTGATC+TGG 0.388850 2.2:-50952675 None:intergenic
TCAGAAAGTTGGAATGAATT+GGG 0.390454 2.2:+50953540 MS.gene00402:CDS
TTTGGCTTTGGTGCAGTGAT+TGG 0.393125 2.2:+50952767 MS.gene00402:CDS
GCAGGAATCTTTGTGCTAAC+TGG 0.395596 2.2:+50952791 MS.gene00402:CDS
AAGCCGATTGGTATATCCTT+TGG 0.407727 2.2:-50953406 None:intergenic
ATCAGAAGTGTAGCATTTAT+CGG 0.409131 2.2:-50953712 None:intergenic
TGGTGGGACCTAATTTGGTT+TGG 0.409509 2.2:+50952749 MS.gene00402:CDS
GTCTTATCCTATGTAGCTTC+AGG 0.410241 2.2:+50952848 MS.gene00402:CDS
TTTGTTGCAATTGACAAAGA+TGG 0.415372 2.2:-50954087 None:intergenic
ACAAACATGGTTAAGGTTCA+AGG 0.416776 2.2:+50952640 MS.gene00402:CDS
AAAGAGACTGCTAGGATTGA+AGG 0.421585 2.2:+50954264 MS.gene00402:CDS
AATACACCTTTAACTCCATA+AGG 0.422612 2.2:-50953304 None:intergenic
CAGCTTTGAAAGGATTCCTC+TGG 0.424940 2.2:-50952593 None:intergenic
TATTGGGGATCGAGGCCTAA+TGG 0.431391 2.2:+50953946 MS.gene00402:CDS
ATGAACCACAAAGAAGCTAT+TGG 0.431579 2.2:+50952546 MS.gene00402:CDS
GCGCTTGTACATCCGAAAAC+AGG 0.445402 2.2:+50953685 MS.gene00402:CDS
AGTGGAACTCCCCAAAACTT+TGG 0.452180 2.2:-50954051 None:intergenic
CCAGAACACCAACTGCTATA+GGG 0.459155 2.2:-50953135 None:intergenic
GCATTCAAGAAGTATGTTAC+CGG 0.465899 2.2:-50952990 None:intergenic
GGGGAGTTCCACTTGTTCCA+TGG 0.471354 2.2:+50954061 MS.gene00402:CDS
CCGATTGGTATATCCTTTGG+TGG 0.474482 2.2:-50953403 None:intergenic
ATTCTTTACTTTGCATATGG+AGG 0.482566 2.2:+50953340 MS.gene00402:CDS
CTTCTGCTCTTTCACAAACA+TGG 0.484220 2.2:+50952627 MS.gene00402:CDS
GCTGTTGAAGTTCCAGCTGC+AGG 0.487505 2.2:+50952911 MS.gene00402:CDS
TCGAGGCCTAATGGTTGGAT+TGG 0.491931 2.2:+50953955 MS.gene00402:CDS
TGAAATTCCTGAAGCTACAT+AGG 0.493757 2.2:-50952855 None:intergenic
CAGAGGAATCCTTTCAAAGC+TGG 0.496146 2.2:+50952594 MS.gene00402:CDS
TTCTTTACTTTGCATATGGA+GGG 0.502896 2.2:+50953341 MS.gene00402:CDS
GCAAATGAACCACCTGCAGC+TGG 0.513871 2.2:-50952923 None:intergenic
AAAGCACACCATCTCAAAGA+TGG 0.514487 2.2:+50953097 MS.gene00402:CDS
AAATACACAGATATAGATAC+AGG 0.520624 2.2:+50953496 MS.gene00402:CDS
TTTGGTGCAGTGATTGGTGC+AGG 0.520646 2.2:+50952773 MS.gene00402:CDS
GTGCAGCAGTATCAAGATCA+TGG 0.523129 2.2:+50953023 MS.gene00402:CDS
GCTTCTCAATTGGATTGCAT+CGG 0.527593 2.2:+50953201 MS.gene00402:CDS
CCACCAAAGGATATACCAAT+CGG 0.532745 2.2:+50953403 MS.gene00402:CDS
GTTCACACATGATTCCTCCT+TGG 0.536512 2.2:+50953659 MS.gene00402:CDS
TTTAGTAGGAAGATTAGGAC+AGG 0.539074 2.2:+50953612 MS.gene00402:CDS
GTTTGACAGTCTTGCAACCA+TGG 0.540242 2.2:+50953363 MS.gene00402:CDS
GTGTATCCAATCCAACCATT+AGG 0.541391 2.2:-50953961 None:intergenic
CACAAAGAAGCTATTGGAGA+TGG 0.542271 2.2:+50952552 MS.gene00402:CDS
TTACTAGACCCTATAGCAGT+TGG 0.542343 2.2:+50953127 MS.gene00402:CDS
ATACTTCTTGAATGCGTACT+CGG 0.547711 2.2:+50952998 MS.gene00402:CDS
TTTGTTGCTTTCATAGCAGC+CGG 0.549975 2.2:+50952971 MS.gene00402:CDS
TGAGTCACAAAGAGACTGCT+AGG 0.551629 2.2:+50954256 MS.gene00402:CDS
GATGGTAACCATGGAACAAG+TGG 0.553814 2.2:-50954069 None:intergenic
GGGGATCGAGGCCTAATGGT+TGG 0.558578 2.2:+50953950 MS.gene00402:CDS
ATAGTTGTTCCAGCTTTGAA+AGG 0.559794 2.2:-50952603 None:intergenic
AATTGTATCCATCTTTGAGA+TGG 0.571253 2.2:-50953105 None:intergenic
CAAGAAGCTCATAACCATGC+AGG 0.571449 2.2:+50952815 MS.gene00402:CDS
CCTTCTTACCAAAAGTGCAA+TGG 0.572193 2.2:-50953830 None:intergenic
TTTCAGCTTATTGGGGATCG+AGG 0.574349 2.2:+50953938 MS.gene00402:CDS
AATATGCACTTTGATAATGT+TGG 0.578928 2.2:+50954158 MS.gene00402:CDS
ATGGGAATTTCAGCTTATTG+GGG 0.579215 2.2:+50953931 MS.gene00402:CDS
AAGAGACTGCTAGGATTGAA+GGG 0.588598 2.2:+50954265 MS.gene00402:CDS
GCCTAATTCAATTCTTAGGT+AGG 0.592021 2.2:-50952945 None:intergenic
AGACTATTGCTGCTCCTGCA+TGG 0.592496 2.2:-50952829 None:intergenic
CTTAAGCTCATGTGTCTCAG+TGG 0.594867 2.2:-50952690 None:intergenic
ATTGCATCGGCAGTCAACAT+AGG 0.606531 2.2:+50953214 MS.gene00402:CDS
TCATATTCGTAATCATTGCA+GGG 0.613623 2.2:+50953242 MS.gene00402:CDS
ATTGAACCAATCAAGCCGAT+TGG 0.614297 2.2:-50953418 None:intergenic
TAAACAAGATTTCTTGCCAG+AGG 0.615202 2.2:+50952577 MS.gene00402:CDS
ATTGACAAAGATGGTAACCA+TGG 0.620125 2.2:-50954078 None:intergenic
GTTGAAGTTCCAGCTGCAGG+TGG 0.622133 2.2:+50952914 MS.gene00402:CDS
TATGGCTCATCAACAAGAGA+AGG 0.624424 2.2:+50954218 MS.gene00402:CDS
GGATGTACAAGCGCGAACCA+AGG 0.667921 2.2:-50953676 None:intergenic
TGTACAAGCGCGAACCAAGG+AGG 0.678479 2.2:-50953673 None:intergenic
GCTGATCATTGCAATCATTG+CGG 0.733326 2.2:-50953164 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAAAAATGTCTCAAT+TGG + chr2.2:50952729-50952748 MS.gene00402:CDS 20.0%
!!! GCAACAAATATTTTTCTTAT+GGG + chr2.2:50954102-50954121 MS.gene00402:CDS 20.0%
!!! TATGAAGCTTTTATAAGATT+TGG + chr2.2:50954135-50954154 MS.gene00402:CDS 20.0%
!!! TGCAACAAATATTTTTCTTA+TGG + chr2.2:50954101-50954120 MS.gene00402:CDS 20.0%
! AAATACACAGATATAGATAC+AGG + chr2.2:50953496-50953515 MS.gene00402:CDS 25.0%
! AACAGTTATATATTGCTTGA+TGG + chr2.2:50953450-50953469 MS.gene00402:CDS 25.0%
! AGAGTTGAAAAAAACCAAAT+AGG - chr2.2:50953997-50954016 None:intergenic 25.0%
! TCTACATTCAACTTATGATA+TGG + chr2.2:50954200-50954219 MS.gene00402:CDS 25.0%
! TTAACTCCATAAGGTAAAAA+AGG - chr2.2:50953298-50953317 None:intergenic 25.0%
!! TATTTTTCTTATGGGATCTT+TGG + chr2.2:50954110-50954129 MS.gene00402:CDS 25.0%
!! TTGGTTTACTATGTTTTCTT+TGG + chr2.2:50954177-50954196 MS.gene00402:CDS 25.0%
!! TTTTTACCTTATGGAGTTAA+AGG + chr2.2:50953298-50953317 MS.gene00402:CDS 25.0%
!!! AATATGCACTTTGATAATGT+TGG + chr2.2:50954158-50954177 MS.gene00402:CDS 25.0%
!!! ATTTGGTTTTTTTCAACTCT+TGG + chr2.2:50953997-50954016 MS.gene00402:CDS 25.0%
!!! TTTGGTTTTTTTCAACTCTT+GGG + chr2.2:50953998-50954017 MS.gene00402:CDS 25.0%
AATACACCTTTAACTCCATA+AGG - chr2.2:50953307-50953326 None:intergenic 30.0%
AATGGGAATTTCAGCTTATT+GGG + chr2.2:50953930-50953949 MS.gene00402:CDS 30.0%
AGAAACTAAAAATCCACCAA+AGG + chr2.2:50953390-50953409 MS.gene00402:CDS 30.0%
ATCATATTCGTAATCATTGC+AGG + chr2.2:50953241-50953260 MS.gene00402:CDS 30.0%
ATTCTTTACTTTGCATATGG+AGG + chr2.2:50953340-50953359 MS.gene00402:CDS 30.0%
GAAAAAATGTCTCAATTGGT+GGG + chr2.2:50952733-50952752 MS.gene00402:CDS 30.0%
GCAATTCTTTACTTTGCATA+TGG + chr2.2:50953337-50953356 MS.gene00402:CDS 30.0%
TCAGAAAGTTGGAATGAATT+GGG + chr2.2:50953540-50953559 MS.gene00402:CDS 30.0%
TCATATTCGTAATCATTGCA+GGG + chr2.2:50953242-50953261 MS.gene00402:CDS 30.0%
TGAAAAAATGTCTCAATTGG+TGG + chr2.2:50952732-50952751 MS.gene00402:CDS 30.0%
TTCAGAAAGTTGGAATGAAT+TGG + chr2.2:50953539-50953558 MS.gene00402:CDS 30.0%
TTCTTTACTTTGCATATGGA+GGG + chr2.2:50953341-50953360 MS.gene00402:CDS 30.0%
TTTGTTGCAATTGACAAAGA+TGG - chr2.2:50954090-50954109 None:intergenic 30.0%
! AATCTTTTGGACGATTCAAA+AGG - chr2.2:50953066-50953085 None:intergenic 30.0%
! AATTGTATCCATCTTTGAGA+TGG - chr2.2:50953108-50953127 None:intergenic 30.0%
! ATCAGAAGTGTAGCATTTAT+CGG - chr2.2:50953715-50953734 None:intergenic 30.0%
! GCAAAATATGTAGTAGCTTT+TGG + chr2.2:50953562-50953581 MS.gene00402:CDS 30.0%
!! GTAAGAAGGTATTATGTTAG+AGG + chr2.2:50953844-50953863 MS.gene00402:CDS 30.0%
!!! ATTTTTAGTTTCTTCAGCCA+TGG - chr2.2:50953383-50953402 None:intergenic 30.0%
!!! CATATATTTTGACTCAGCAA+AGG + chr2.2:50954025-50954044 MS.gene00402:CDS 30.0%
!!! TTGACACCTTTTTTACCTTA+TGG + chr2.2:50953289-50953308 MS.gene00402:CDS 30.0%
ACAAACATGGTTAAGGTTCA+AGG + chr2.2:50952640-50952659 MS.gene00402:CDS 35.0%
ACACTGTTACTGTTCCTATT+TGG + chr2.2:50953980-50953999 MS.gene00402:CDS 35.0%
AGTCGCCTAATTCAATTCTT+AGG - chr2.2:50952952-50952971 None:intergenic 35.0%
ATACTTCTTGAATGCGTACT+CGG + chr2.2:50952998-50953017 MS.gene00402:CDS 35.0%
ATGAACCACAAAGAAGCTAT+TGG + chr2.2:50952546-50952565 MS.gene00402:CDS 35.0%
ATGGGAATTTCAGCTTATTG+GGG + chr2.2:50953931-50953950 MS.gene00402:CDS 35.0%
ATTGACAAAGATGGTAACCA+TGG - chr2.2:50954081-50954100 None:intergenic 35.0%
CAATGGGAATTTCAGCTTAT+TGG + chr2.2:50953929-50953948 MS.gene00402:CDS 35.0%
CTCTTTCACAAACATGGTTA+AGG + chr2.2:50952633-50952652 MS.gene00402:CDS 35.0%
GAAAAACTTCGCTTCTCAAT+TGG + chr2.2:50953191-50953210 MS.gene00402:CDS 35.0%
GCCTAATTCAATTCTTAGGT+AGG - chr2.2:50952948-50952967 None:intergenic 35.0%
GCCTACCTAAGAATTGAATT+AGG + chr2.2:50952944-50952963 MS.gene00402:CDS 35.0%
TAAACAAGATTTCTTGCCAG+AGG + chr2.2:50952577-50952596 MS.gene00402:CDS 35.0%
TCAGTTGCATTTCAGAAAGT+TGG + chr2.2:50953529-50953548 MS.gene00402:CDS 35.0%
TGAAATTCCTGAAGCTACAT+AGG - chr2.2:50952858-50952877 None:intergenic 35.0%
TTTAGTAGGAAGATTAGGAC+AGG + chr2.2:50953612-50953631 MS.gene00402:CDS 35.0%
! ATGACAACAGTGCTTTTAGT+AGG + chr2.2:50953598-50953617 MS.gene00402:CDS 35.0%
! CTCATTGTTGCTTCTTCAAT+GGG + chr2.2:50953913-50953932 MS.gene00402:CDS 35.0%
! GATGATATCCATTGCACTTT+TGG + chr2.2:50953822-50953841 MS.gene00402:CDS 35.0%
! GCATTCAAGAAGTATGTTAC+CGG - chr2.2:50952993-50953012 None:intergenic 35.0%
! GTGCTTTTAGTAGGAAGATT+AGG + chr2.2:50953607-50953626 MS.gene00402:CDS 35.0%
! TCTCATTGTTGCTTCTTCAA+TGG + chr2.2:50953912-50953931 MS.gene00402:CDS 35.0%
!! ATAGTTGTTCCAGCTTTGAA+AGG - chr2.2:50952606-50952625 None:intergenic 35.0%
!! TTGATTCGAAGCGAATCTTT+TGG - chr2.2:50953079-50953098 None:intergenic 35.0%
!! TTTATCGGTGTTCCTGTTTT+CGG - chr2.2:50953700-50953719 None:intergenic 35.0%
AAAGAGACTGCTAGGATTGA+AGG + chr2.2:50954264-50954283 MS.gene00402:CDS 40.0%
AAAGCACACCATCTCAAAGA+TGG + chr2.2:50953097-50953116 MS.gene00402:CDS 40.0%
AAGAGACTGCTAGGATTGAA+GGG + chr2.2:50954265-50954284 MS.gene00402:CDS 40.0%
AAGCCGATTGGTATATCCTT+TGG - chr2.2:50953409-50953428 None:intergenic 40.0%
ATTGAACCAATCAAGCCGAT+TGG - chr2.2:50953421-50953440 None:intergenic 40.0%
CACAAAGAAGCTATTGGAGA+TGG + chr2.2:50952552-50952571 MS.gene00402:CDS 40.0%
CACATCCAAGCTAGTGAAAA+AGG - chr2.2:50953761-50953780 None:intergenic 40.0%
CACCAAAGCCAAACCAAATT+AGG - chr2.2:50952760-50952779 None:intergenic 40.0%
CATCTCCAATAGCTTCTTTG+TGG - chr2.2:50952554-50952573 None:intergenic 40.0%
CCACCAAAGGATATACCAAT+CGG + chr2.2:50953403-50953422 MS.gene00402:CDS 40.0%
CTTCTGCTCTTTCACAAACA+TGG + chr2.2:50952627-50952646 MS.gene00402:CDS 40.0%
GCTGATCATTGCAATCATTG+CGG - chr2.2:50953167-50953186 None:intergenic 40.0%
GCTTCTCAATTGGATTGCAT+CGG + chr2.2:50953201-50953220 MS.gene00402:CDS 40.0%
GTCTTATCCTATGTAGCTTC+AGG + chr2.2:50952848-50952867 MS.gene00402:CDS 40.0%
GTGTATCCAATCCAACCATT+AGG - chr2.2:50953964-50953983 None:intergenic 40.0%
TATGGCTCATCAACAAGAGA+AGG + chr2.2:50954218-50954237 MS.gene00402:CDS 40.0%
TCAATTGGTGGGACCTAATT+TGG + chr2.2:50952744-50952763 MS.gene00402:CDS 40.0%
TTACTAGACCCTATAGCAGT+TGG + chr2.2:50953127-50953146 MS.gene00402:CDS 40.0%
! AGCAAAGGAAGCCAAAGTTT+TGG + chr2.2:50954040-50954059 MS.gene00402:CDS 40.0%
! CAAAGGAAGCCAAAGTTTTG+GGG + chr2.2:50954042-50954061 MS.gene00402:CDS 40.0%
! CCATTGCACTTTTGGTAAGA+AGG + chr2.2:50953830-50953849 MS.gene00402:CDS 40.0%
! CCTTCTTACCAAAAGTGCAA+TGG - chr2.2:50953833-50953852 None:intergenic 40.0%
! GCAAAGGAAGCCAAAGTTTT+GGG + chr2.2:50954041-50954060 MS.gene00402:CDS 40.0%
!! CATAGCCTTTTTCACTAGCT+TGG + chr2.2:50953753-50953772 MS.gene00402:CDS 40.0%
!! GACCTAATTTGGTTTGGCTT+TGG + chr2.2:50952755-50952774 MS.gene00402:CDS 40.0%
!! GATATACCAATCGGCTTGAT+TGG + chr2.2:50953412-50953431 MS.gene00402:CDS 40.0%
!! GTAGCTTTTGGTGCATTGAA+AGG + chr2.2:50953574-50953593 MS.gene00402:CDS 40.0%
!! TTTGTTGCTTTCATAGCAGC+CGG + chr2.2:50952971-50952990 MS.gene00402:CDS 40.0%
ACCAGAACACCAACTGCTAT+AGG - chr2.2:50953139-50953158 None:intergenic 45.0%
AGTGGAACTCCCCAAAACTT+TGG - chr2.2:50954054-50954073 None:intergenic 45.0%
CAAGAAGCTCATAACCATGC+AGG + chr2.2:50952815-50952834 MS.gene00402:CDS 45.0%
CAGAGGAATCCTTTCAAAGC+TGG + chr2.2:50952594-50952613 MS.gene00402:CDS 45.0%
CCAGAACACCAACTGCTATA+GGG - chr2.2:50953138-50953157 None:intergenic 45.0%
CCGATTGGTATATCCTTTGG+TGG - chr2.2:50953406-50953425 None:intergenic 45.0%
CTTAAGCTCATGTGTCTCAG+TGG - chr2.2:50952693-50952712 None:intergenic 45.0%
GATGGTAACCATGGAACAAG+TGG - chr2.2:50954072-50954091 None:intergenic 45.0%
GCAGGAATCTTTGTGCTAAC+TGG + chr2.2:50952791-50952810 MS.gene00402:CDS 45.0%
GTGCAGCAGTATCAAGATCA+TGG + chr2.2:50953023-50953042 MS.gene00402:CDS 45.0%
GTTCACACATGATTCCTCCT+TGG + chr2.2:50953659-50953678 MS.gene00402:CDS 45.0%
GTTTGACAGTCTTGCAACCA+TGG + chr2.2:50953363-50953382 MS.gene00402:CDS 45.0%
TGAGTCACAAAGAGACTGCT+AGG + chr2.2:50954256-50954275 MS.gene00402:CDS 45.0%
TGGTGGGACCTAATTTGGTT+TGG + chr2.2:50952749-50952768 MS.gene00402:CDS 45.0%
TTTCAGCTTATTGGGGATCG+AGG + chr2.2:50953938-50953957 MS.gene00402:CDS 45.0%
! ATTGCATCGGCAGTCAACAT+AGG + chr2.2:50953214-50953233 MS.gene00402:CDS 45.0%
!! CAGCTTTGAAAGGATTCCTC+TGG - chr2.2:50952596-50952615 None:intergenic 45.0%
!! TTTGGCTTTGGTGCAGTGAT+TGG + chr2.2:50952767-50952786 MS.gene00402:CDS 45.0%
AGACTATTGCTGCTCCTGCA+TGG - chr2.2:50952832-50952851 None:intergenic 50.0%
GCGCTTGTACATCCGAAAAC+AGG + chr2.2:50953685-50953704 MS.gene00402:CDS 50.0%
TATTGGGGATCGAGGCCTAA+TGG + chr2.2:50953946-50953965 MS.gene00402:CDS 50.0%
TCGAGGCCTAATGGTTGGAT+TGG + chr2.2:50953955-50953974 MS.gene00402:CDS 50.0%
! CCCTATAGCAGTTGGTGTTC+TGG + chr2.2:50953135-50953154 MS.gene00402:CDS 50.0%
! TTTGGTGCAGTGATTGGTGC+AGG + chr2.2:50952773-50952792 MS.gene00402:CDS 50.0%
CTCAGTGGCATCGTCTGATC+TGG - chr2.2:50952678-50952697 None:intergenic 55.0%
GCAAATGAACCACCTGCAGC+TGG - chr2.2:50952926-50952945 None:intergenic 55.0%
GCTGTTGAAGTTCCAGCTGC+AGG + chr2.2:50952911-50952930 MS.gene00402:CDS 55.0%
GGATGTACAAGCGCGAACCA+AGG - chr2.2:50953679-50953698 None:intergenic 55.0%
GGGGAGTTCCACTTGTTCCA+TGG + chr2.2:50954061-50954080 MS.gene00402:CDS 55.0%
GTTGAAGTTCCAGCTGCAGG+TGG + chr2.2:50952914-50952933 MS.gene00402:CDS 55.0%
TGTACAAGCGCGAACCAAGG+AGG - chr2.2:50953676-50953695 None:intergenic 55.0%
GGGGATCGAGGCCTAATGGT+TGG + chr2.2:50953950-50953969 MS.gene00402:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 50952536 50954293 50952536 ID=MS.gene00402
chr2.2 mRNA 50952536 50954293 50952536 ID=MS.gene00402.t1;Parent=MS.gene00402
chr2.2 exon 50952536 50954293 50952536 ID=MS.gene00402.t1.exon1;Parent=MS.gene00402.t1
chr2.2 CDS 50952536 50954293 50952536 ID=cds.MS.gene00402.t1;Parent=MS.gene00402.t1
Gene Sequence

>MS.gene00402

ATGGATGACAATGAACCACAAAGAAGCTATTGGAGATGGAGTAAACAAGATTTCTTGCCAGAGGAATCCTTTCAAAGCTGGAACAACTATGCTTCTGCTCTTTCACAAACATGGTTAAGGTTCAAGGATCGTGTTCAGACCAGATCAGACGATGCCACTGAGACACATGAGCTTAAGAAACAAAGTGAGAATGAAATGAAAAAATGTCTCAATTGGTGGGACCTAATTTGGTTTGGCTTTGGTGCAGTGATTGGTGCAGGAATCTTTGTGCTAACTGGTCAAGAAGCTCATAACCATGCAGGAGCAGCAATAGTCTTATCCTATGTAGCTTCAGGAATTTCAGCAATGCTTTCTGTTTTTTGTTACACAGAATTTGCTGTTGAAGTTCCAGCTGCAGGTGGTTCATTTGCCTACCTAAGAATTGAATTAGGCGACTTTGTTGCTTTCATAGCAGCCGGTAACATACTTCTTGAATGCGTACTCGGAAGTGCAGCAGTATCAAGATCATGGACATCTTACTTCACAAGCCTTTTGAATCGTCCAAAAGATTCGCTTCGAATCAAAGCACACCATCTCAAAGATGGATACAATTTACTAGACCCTATAGCAGTTGGTGTTCTGGTAATTGCCGCAATGATTGCAATGATCAGCACAAGAAAAACTTCGCTTCTCAATTGGATTGCATCGGCAGTCAACATAGGTGTAATCATATTCGTAATCATTGCAGGGTTCTCTCATGCAAATACATCAAACTTGACACCTTTTTTACCTTATGGAGTTAAAGGTGTATTTCAAGCATCTGCAATTCTTTACTTTGCATATGGAGGGTTTGACAGTCTTGCAACCATGGCTGAAGAAACTAAAAATCCACCAAAGGATATACCAATCGGCTTGATTGGTTCAATGTCTGTGATAACAGTTATATATTGCTTGATGGCACTTTCACTAAGCATGATGCAGAAATACACAGATATAGATACAGGCGCAGCTTTCTCAGTTGCATTTCAGAAAGTTGGAATGAATTGGGCAAAATATGTAGTAGCTTTTGGTGCATTGAAAGGTATGACAACAGTGCTTTTAGTAGGAAGATTAGGACAGGCACGTTATATCGCTCACATCGCACGTTCACACATGATTCCTCCTTGGTTCGCGCTTGTACATCCGAAAACAGGAACACCGATAAATGCTACACTTCTGATTACAATTTCAAGTGCTTGCATAGCCTTTTTCACTAGCTTGGATGTGCTATCAAGTTTGATATCAGTAAGCACACTTTTCGTTTTCGTGATGATATCCATTGCACTTTTGGTAAGAAGGTATTATGTTAGAGGAGTTACAACAAAAGAGAATCAGTTAAAGCTTGTTGTGTTTTTGATTCTCATTGTTGCTTCTTCAATGGGAATTTCAGCTTATTGGGGATCGAGGCCTAATGGTTGGATTGGATACACTGTTACTGTTCCTATTTGGTTTTTTTCAACTCTTGGGATGTCATATATTTTGACTCAGCAAAGGAAGCCAAAGTTTTGGGGAGTTCCACTTGTTCCATGGTTACCATCTTTGTCAATTGCAACAAATATTTTTCTTATGGGATCTTTGGAATATGAAGCTTTTATAAGATTTGGAATATGCACTTTGATAATGTTGGTTTACTATGTTTTCTTTGGTCTACATTCAACTTATGATATGGCTCATCAACAAGAGAAGGTGCAGACAATCAATGTGAGTCACAAAGAGACTGCTAGGATTGAAGGGCCTTAA
Protein sequence

>MS.gene00402.t1

MDDNEPQRSYWRWSKQDFLPEESFQSWNNYASALSQTWLRFKDRVQTRSDDATETHELKKQSENEMKKCLNWWDLIWFGFGAVIGAGIFVLTGQEAHNHAGAAIVLSYVASGISAMLSVFCYTEFAVEVPAAGGSFAYLRIELGDFVAFIAAGNILLECVLGSAAVSRSWTSYFTSLLNRPKDSLRIKAHHLKDGYNLLDPIAVGVLVIAAMIAMISTRKTSLLNWIASAVNIGVIIFVIIAGFSHANTSNLTPFLPYGVKGVFQASAILYFAYGGFDSLATMAEETKNPPKDIPIGLIGSMSVITVIYCLMALSLSMMQKYTDIDTGAAFSVAFQKVGMNWAKYVVAFGALKGMTTVLLVGRLGQARYIAHIARSHMIPPWFALVHPKTGTPINATLLITISSACIAFFTSLDVLSSLISVSTLFVFVMISIALLVRRYYVRGVTTKENQLKLVVFLILIVASSMGISAYWGSRPNGWIGYTVTVPIWFFSTLGMSYILTQQRKPKFWGVPLVPWLPSLSIATNIFLMGSLEYEAFIRFGICTLIMLVYYVFFGLHSTYDMAHQQEKVQTINVSHKETARIEGP