Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030905.t1 | AET04492.2 | 94.8 | 461 | 24 | 0 | 1 | 461 | 1 | 461 | 9.50E-244 | 852.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030905.t1 | Q84MA5 | 65.7 | 455 | 145 | 2 | 1 | 455 | 147 | 590 | 1.5e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030905.t1 | G7L9L8 | 94.8 | 461 | 24 | 0 | 1 | 461 | 1 | 461 | 6.9e-244 | 852.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030905 | MS.gene47297 | PPI |
| MS.gene030905 | MS.gene49831 | PPI |
| MS.gene41792 | MS.gene030905 | PPI |
| MS.gene030905 | MS.gene08137 | PPI |
| MS.gene030905 | MS.gene32277 | PPI |
| MS.gene030905 | MS.gene08148 | PPI |
| MS.gene030905 | MS.gene042480 | PPI |
| MS.gene38965 | MS.gene030905 | PPI |
| MS.gene030905 | MS.gene41790 | PPI |
| MS.gene030905 | MS.gene073450 | PPI |
| MS.gene032361 | MS.gene030905 | PPI |
| MS.gene030905 | MS.gene007812 | PPI |
| MS.gene030905 | MS.gene38964 | PPI |
| MS.gene030905 | MS.gene08144 | PPI |
| MS.gene030905 | MS.gene042491 | PPI |
| MS.gene030905 | MS.gene41795 | PPI |
| MS.gene030905 | MS.gene041367 | PPI |
| MS.gene007811 | MS.gene030905 | PPI |
| MS.gene030905 | MS.gene58674 | PPI |
| MS.gene030905 | MS.gene00402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030905.t1 | MTR_8g089340 | 94.794 | 461 | 24 | 0 | 1 | 461 | 1 | 461 | 0.0 | 844 |
| MS.gene030905.t1 | MTR_8g089320 | 91.868 | 455 | 36 | 1 | 1 | 455 | 149 | 602 | 0.0 | 832 |
| MS.gene030905.t1 | MTR_8g089360 | 72.931 | 447 | 116 | 3 | 1 | 447 | 154 | 595 | 0.0 | 647 |
| MS.gene030905.t1 | MTR_8g089360 | 72.931 | 447 | 116 | 3 | 1 | 447 | 137 | 578 | 0.0 | 646 |
| MS.gene030905.t1 | MTR_1g030660 | 66.125 | 431 | 144 | 1 | 1 | 431 | 144 | 572 | 0.0 | 596 |
| MS.gene030905.t1 | MTR_2g035430 | 55.682 | 440 | 194 | 1 | 1 | 440 | 149 | 587 | 0.0 | 521 |
| MS.gene030905.t1 | MTR_8g461380 | 48.260 | 431 | 220 | 3 | 1 | 430 | 156 | 584 | 1.21e-141 | 418 |
| MS.gene030905.t1 | MTR_1g111740 | 38.938 | 452 | 258 | 5 | 2 | 441 | 128 | 573 | 2.08e-100 | 312 |
| MS.gene030905.t1 | MTR_4g099270 | 39.679 | 436 | 247 | 6 | 2 | 427 | 100 | 529 | 4.84e-97 | 303 |
| MS.gene030905.t1 | MTR_4g099270 | 39.716 | 423 | 239 | 6 | 15 | 427 | 1 | 417 | 1.63e-93 | 290 |
| MS.gene030905.t1 | MTR_6g034535 | 43.494 | 269 | 135 | 6 | 180 | 435 | 49 | 313 | 2.28e-70 | 226 |
| MS.gene030905.t1 | MTR_4g099270 | 43.629 | 259 | 142 | 2 | 2 | 256 | 121 | 379 | 2.70e-68 | 223 |
| MS.gene030905.t1 | MTR_7g086510 | 36.721 | 305 | 186 | 2 | 1 | 298 | 115 | 419 | 1.13e-52 | 187 |
| MS.gene030905.t1 | MTR_6g027650 | 34.641 | 306 | 191 | 4 | 1 | 298 | 113 | 417 | 9.68e-51 | 182 |
| MS.gene030905.t1 | MTR_6g027680 | 33.987 | 306 | 193 | 3 | 1 | 298 | 123 | 427 | 1.90e-50 | 180 |
| MS.gene030905.t1 | MTR_6g027630 | 34.641 | 306 | 191 | 4 | 1 | 298 | 35 | 339 | 4.21e-50 | 179 |
| MS.gene030905.t1 | MTR_6g027630 | 34.641 | 306 | 191 | 4 | 1 | 298 | 120 | 424 | 7.84e-50 | 179 |
| MS.gene030905.t1 | MTR_7g086610 | 35.621 | 306 | 188 | 3 | 1 | 298 | 109 | 413 | 7.92e-50 | 179 |
| MS.gene030905.t1 | MTR_6g027630 | 34.641 | 306 | 191 | 4 | 1 | 298 | 120 | 424 | 1.49e-49 | 179 |
| MS.gene030905.t1 | MTR_6g027660 | 32.459 | 305 | 199 | 2 | 1 | 298 | 121 | 425 | 2.90e-49 | 178 |
| MS.gene030905.t1 | MTR_7g007850 | 28.670 | 436 | 288 | 7 | 3 | 424 | 128 | 554 | 1.69e-45 | 167 |
| MS.gene030905.t1 | MTR_4g099270 | 42.246 | 187 | 104 | 2 | 2 | 184 | 121 | 307 | 7.43e-45 | 159 |
| MS.gene030905.t1 | MTR_7g007850 | 25.910 | 467 | 291 | 6 | 3 | 424 | 128 | 584 | 1.23e-42 | 159 |
| MS.gene030905.t1 | MTR_7g007850 | 30.945 | 307 | 195 | 3 | 3 | 298 | 128 | 428 | 3.52e-38 | 145 |
| MS.gene030905.t1 | MTR_7g007850 | 30.945 | 307 | 195 | 3 | 3 | 298 | 128 | 428 | 7.72e-38 | 145 |
| MS.gene030905.t1 | MTR_6g027670 | 33.544 | 158 | 105 | 0 | 141 | 298 | 1 | 158 | 1.80e-28 | 114 |
| MS.gene030905.t1 | MTR_2g064760 | 86.207 | 29 | 4 | 0 | 342 | 370 | 13 | 41 | 2.31e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030905.t1 | AT4G21120 | 65.714 | 455 | 145 | 2 | 1 | 455 | 147 | 590 | 0.0 | 620 |
| MS.gene030905.t1 | AT4G21120 | 65.632 | 451 | 144 | 2 | 5 | 455 | 1 | 440 | 0.0 | 613 |
| MS.gene030905.t1 | AT2G34960 | 55.425 | 424 | 188 | 1 | 1 | 424 | 141 | 563 | 4.08e-171 | 493 |
| MS.gene030905.t1 | AT1G17120 | 51.651 | 424 | 203 | 2 | 1 | 424 | 158 | 579 | 9.33e-146 | 429 |
| MS.gene030905.t1 | AT3G10600 | 39.503 | 443 | 237 | 7 | 2 | 424 | 134 | 565 | 8.92e-105 | 323 |
| MS.gene030905.t1 | AT3G10600 | 39.302 | 430 | 230 | 7 | 15 | 424 | 1 | 419 | 2.28e-101 | 310 |
| MS.gene030905.t1 | AT5G04770 | 39.815 | 432 | 243 | 5 | 2 | 420 | 135 | 562 | 1.67e-99 | 310 |
| MS.gene030905.t1 | AT5G04770 | 39.857 | 419 | 235 | 5 | 15 | 420 | 1 | 415 | 1.29e-96 | 298 |
| MS.gene030905.t1 | AT5G04770 | 40.152 | 264 | 148 | 2 | 2 | 255 | 135 | 398 | 1.54e-61 | 206 |
| MS.gene030905.t1 | AT5G36940 | 36.066 | 305 | 188 | 3 | 1 | 298 | 106 | 410 | 1.04e-53 | 190 |
| MS.gene030905.t1 | AT3G03720 | 33.770 | 305 | 195 | 2 | 1 | 298 | 101 | 405 | 3.24e-50 | 180 |
| MS.gene030905.t1 | AT1G58030 | 34.098 | 305 | 194 | 3 | 1 | 298 | 117 | 421 | 4.93e-50 | 180 |
| MS.gene030905.t1 | AT1G05940 | 26.304 | 460 | 300 | 6 | 3 | 441 | 9 | 450 | 6.40e-44 | 160 |
| MS.gene030905.t1 | AT1G05940 | 26.304 | 460 | 300 | 6 | 3 | 441 | 127 | 568 | 5.06e-43 | 160 |
| MS.gene030905.t1 | AT1G05940 | 27.295 | 414 | 269 | 5 | 3 | 395 | 127 | 529 | 5.93e-40 | 150 |
| MS.gene030905.t1 | AT1G05940 | 28.080 | 349 | 230 | 3 | 3 | 335 | 127 | 470 | 1.37e-38 | 146 |
Find 101 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGAATTTCAGCTTAT+TGG | 0.122057 | 4.3:+11052650 | MS.gene030905:CDS |
| GTGTGTCTTGTGTTGATTAT+TGG | 0.202436 | 4.3:+11052622 | MS.gene030905:CDS |
| ATACATATCAAGTTATTAAT+TGG | 0.204469 | 4.3:-11053061 | None:intergenic |
| TTGGTATACTATGTGCTATT+AGG | 0.217718 | 4.3:+11052901 | MS.gene030905:CDS |
| TCAATGACTTCACTCCTTTC+GGG | 0.224601 | 4.3:+11052011 | MS.gene030905:CDS |
| GCTATTAACATATTCCTTCT+TGG | 0.225477 | 4.3:+11052826 | MS.gene030905:CDS |
| AATTGGAATTTCAGCTTATT+GGG | 0.231227 | 4.3:+11052651 | MS.gene030905:CDS |
| TTCAATGACTTCACTCCTTT+CGG | 0.234746 | 4.3:+11052010 | MS.gene030905:CDS |
| TTGCTCCTTTGTGGTTTATA+GGG | 0.241128 | 4.3:+11052713 | MS.gene030905:CDS |
| TTTGCTCCTTTGTGGTTTAT+AGG | 0.244832 | 4.3:+11052712 | MS.gene030905:CDS |
| CTAATAGTAGTGAGCATAAT+TGG | 0.262172 | 4.3:+11052674 | MS.gene030905:CDS |
| CGTATATAAGGTTTACGATT+TGG | 0.279431 | 4.3:+11052866 | MS.gene030905:CDS |
| GGGGAGTTCCTTTGGTTCCT+TGG | 0.281218 | 4.3:+11052785 | MS.gene030905:CDS |
| GTTGCAGAGGGTGGCAAAAT+AGG | 0.283118 | 4.3:-11051771 | None:intergenic |
| TTATAGGGACTGGTGCTCTT+TGG | 0.283313 | 4.3:+11052728 | MS.gene030905:CDS |
| TGGTATACTATGTGCTATTA+GGG | 0.320967 | 4.3:+11052902 | MS.gene030905:CDS |
| CTTTGATGCAGTTTCAACTA+TGG | 0.326491 | 4.3:+11052084 | MS.gene030905:CDS |
| CATCTTGACCCTATTGCTAT+TGG | 0.330251 | 4.3:+11051848 | MS.gene030905:CDS |
| TGGCAAAGAAGCCTAAATTA+TGG | 0.332142 | 4.3:+11052764 | MS.gene030905:CDS |
| AAAGGAACTCCCCATAATTT+AGG | 0.346807 | 4.3:-11052775 | None:intergenic |
| GACATTCCTATTGGTCTAGT+TGG | 0.348285 | 4.3:+11052133 | MS.gene030905:CDS |
| CACAATATGAACCCTGACTA+TGG | 0.355787 | 4.3:+11051824 | MS.gene030905:CDS |
| TAAATTATGGGGAGTTCCTT+TGG | 0.356075 | 4.3:+11052777 | MS.gene030905:CDS |
| GCTAAGTACATCGTTTCATT+AGG | 0.362872 | 4.3:+11052283 | MS.gene030905:CDS |
| ACTAGAGCTCCAATAGCAAT+AGG | 0.367625 | 4.3:-11051857 | None:intergenic |
| TTGATTATTGGTTCTTCAAT+TGG | 0.371036 | 4.3:+11052634 | MS.gene030905:CDS |
| ATATTCAAGGAGGATGTTTC+CGG | 0.371568 | 4.3:-11051711 | None:intergenic |
| ATACAATCTTTGCTCCTTTG+TGG | 0.380411 | 4.3:+11052704 | MS.gene030905:CDS |
| TTCCATTGCTTCTCAACCTC+CGG | 0.382100 | 4.3:-11052988 | None:intergenic |
| TAGTGCTGTTGGAATGGATT+GGG | 0.389974 | 4.3:+11052261 | MS.gene030905:CDS |
| GGCAAAGAAGCCTAAATTAT+GGG | 0.393362 | 4.3:+11052765 | MS.gene030905:CDS |
| GCTCTTGTTGATGAAAGAAC+TGG | 0.394168 | 4.3:+11052406 | MS.gene030905:CDS |
| GGGTCAAGATGGCCATAGTC+AGG | 0.395099 | 4.3:-11051836 | None:intergenic |
| TCAAGTGGGGTAACTACAAA+AGG | 0.402045 | 4.3:+11052580 | MS.gene030905:CDS |
| GCATGGAATGGTCAGTTCTT+CGG | 0.404608 | 4.3:+11052036 | MS.gene030905:CDS |
| ATTATCTTCATAGTAATTGC+TGG | 0.415527 | 4.3:+11051962 | MS.gene030905:CDS |
| AATTTAGGCTTCTTTGCCAT+TGG | 0.418140 | 4.3:-11052760 | None:intergenic |
| ATTGATCCAACTAGACCAAT+AGG | 0.431013 | 4.3:-11052139 | None:intergenic |
| TTCACTCCTTTCGGGTTGCA+TGG | 0.432881 | 4.3:+11052019 | MS.gene030905:CDS |
| CCTTTGTGGTTTATAGGGAC+TGG | 0.440792 | 4.3:+11052718 | MS.gene030905:CDS |
| TTAGTGCTGTTGGAATGGAT+TGG | 0.443178 | 4.3:+11052260 | MS.gene030905:CDS |
| ACTACTATACGAAAATCATC+AGG | 0.459755 | 4.3:-11051800 | None:intergenic |
| TCCTTTCGGGTTGCATGGAA+TGG | 0.461688 | 4.3:+11052024 | MS.gene030905:CDS |
| ATAAGGTTTACGATTTGGAC+AGG | 0.465281 | 4.3:+11052871 | MS.gene030905:CDS |
| GCAACTGAGAAAGGAGCATC+AGG | 0.468881 | 4.3:-11052235 | None:intergenic |
| ATTGAGATCGTAGCATTCAT+AGG | 0.474323 | 4.3:-11052433 | None:intergenic |
| CCTGGTAGAGACATTCCTAT+TGG | 0.474972 | 4.3:+11052124 | MS.gene030905:CDS |
| GCACTAAAAGCAACTGAGAA+AGG | 0.478246 | 4.3:-11052244 | None:intergenic |
| GTTGAAGATGGAAGAGCCTT+TGG | 0.481809 | 4.3:-11051909 | None:intergenic |
| GATGTTTCCGGCAGCTATGA+AGG | 0.485872 | 4.3:-11051699 | None:intergenic |
| ACATAGCAGTGGTTCTGATC+CGG | 0.487510 | 4.3:+11052969 | MS.gene030905:CDS |
| ATCCTCCTTGAATATGTCAT+AGG | 0.488387 | 4.3:+11051719 | MS.gene030905:CDS |
| AAGGAATATGTTAATAGCAA+TGG | 0.490509 | 4.3:-11052821 | None:intergenic |
| AGTAGTGAGCATAATTGGAT+TGG | 0.492532 | 4.3:+11052679 | MS.gene030905:CDS |
| ACGCCGCGGTAGCTCGATCA+TGG | 0.494424 | 4.3:+11051744 | MS.gene030905:CDS |
| CCAATAGGAATGTCTCTACC+AGG | 0.501633 | 4.3:-11052124 | None:intergenic |
| TAAGGAGATATTATTCAAGT+GGG | 0.502977 | 4.3:+11052566 | MS.gene030905:CDS |
| GATTTGGACAGGGTTTCTCT+TGG | 0.516461 | 4.3:+11052882 | MS.gene030905:CDS |
| CTAGAGCTCCAATAGCAATA+GGG | 0.517338 | 4.3:-11051856 | None:intergenic |
| TTTGTTGCCTTCATAGCTGC+CGG | 0.530560 | 4.3:+11051692 | MS.gene030905:CDS |
| CTTGCAGTTTACAGCACCAA+AGG | 0.534562 | 4.3:+11051893 | MS.gene030905:CDS |
| ATAAAGTAGAAATCGACAAA+AGG | 0.538029 | 4.3:-11052510 | None:intergenic |
| TGTGGCTATGTAGTTGAAGA+TGG | 0.545536 | 4.3:-11051921 | None:intergenic |
| CGTTGCCTATGACATATTCA+AGG | 0.547193 | 4.3:-11051724 | None:intergenic |
| TTAATAGCAATGGATAAAGA+AGG | 0.556623 | 4.3:-11052811 | None:intergenic |
| ATCCGGAGGTTGAGAAGCAA+TGG | 0.560522 | 4.3:+11052986 | MS.gene030905:CDS |
| GTAAACTGCAAGGGCTGTGA+TGG | 0.563586 | 4.3:-11051882 | None:intergenic |
| CATAGTCAGGGTTCATATTG+TGG | 0.563878 | 4.3:-11051823 | None:intergenic |
| CTTTGGTGCTGTAAACTGCA+AGG | 0.567605 | 4.3:-11051892 | None:intergenic |
| CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | 4.3:+11052581 | MS.gene030905:CDS |
| CAATAGCAATAGGGTCAAGA+TGG | 0.574940 | 4.3:-11051847 | None:intergenic |
| GTAAGGAGATATTATTCAAG+TGG | 0.577397 | 4.3:+11052565 | MS.gene030905:CDS |
| GTTAGCTAGAATACTAAGAT+CGG | 0.584642 | 4.3:-11052488 | None:intergenic |
| GTTTCATTAGGTGCTTTGAA+AGG | 0.590596 | 4.3:+11052295 | MS.gene030905:CDS |
| GCAGAGGGTGGCAAAATAGG+AGG | 0.598124 | 4.3:-11051768 | None:intergenic |
| TGAGAAGCAATGGAACAAGA+TGG | 0.601081 | 4.3:+11052996 | MS.gene030905:CDS |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.3:+11052380 | MS.gene030905:CDS |
| GAAGGTAGCCAAGGAACCAA+AGG | 0.606519 | 4.3:-11052793 | None:intergenic |
| ATGGATAAAGAAGGTAGCCA+AGG | 0.614956 | 4.3:-11052802 | None:intergenic |
| TAAGGTTTACGATTTGGACA+GGG | 0.615168 | 4.3:+11052872 | MS.gene030905:CDS |
| ACCATTCCATGCAACCCGAA+AGG | 0.616795 | 4.3:-11052025 | None:intergenic |
| TTTGGTGCTGTAAACTGCAA+GGG | 0.618827 | 4.3:-11051891 | None:intergenic |
| GGTCAAGATGGCCATAGTCA+GGG | 0.621031 | 4.3:-11051835 | None:intergenic |
| GATAAGAGTAAACATAGCAG+TGG | 0.622480 | 4.3:+11052958 | MS.gene030905:CDS |
| AATATAAGCAAAGAAAAGAA+CGG | 0.627891 | 4.3:-11052059 | None:intergenic |
| CAATGGAACAAGATGGAGCA+AGG | 0.635963 | 4.3:+11053003 | MS.gene030905:CDS |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.3:+11052306 | MS.gene030905:CDS |
| GCAAAGAAGCCTAAATTATG+GGG | 0.643860 | 4.3:+11052766 | MS.gene030905:CDS |
| TAGCAGTGGTTCTGATCCGG+AGG | 0.648811 | 4.3:+11052972 | MS.gene030905:CDS |
| CATAGCCACAATGTTCCACA+TGG | 0.652539 | 4.3:+11051934 | MS.gene030905:CDS |
| CTACTATACGAAAATCATCA+GGG | 0.667731 | 4.3:-11051799 | None:intergenic |
| AAGGAGATATTATTCAAGTG+GGG | 0.676082 | 4.3:+11052567 | MS.gene030905:CDS |
| GGTCCATGATCGAGCTACCG+CGG | 0.680216 | 4.3:-11051747 | None:intergenic |
| GACAGCCATGTGGAACATTG+TGG | 0.684798 | 4.3:-11051939 | None:intergenic |
| CAATAGGAATGTCTCTACCA+GGG | 0.688021 | 4.3:-11052123 | None:intergenic |
| TGAAGATAATGACAGCCATG+TGG | 0.711409 | 4.3:-11051949 | None:intergenic |
| CCAGTCCCTATAAACCACAA+AGG | 0.715990 | 4.3:-11052718 | None:intergenic |
| TGCCTATGACATATTCAAGG+AGG | 0.723417 | 4.3:-11051721 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.3:-11052394 | None:intergenic |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.3:-11052397 | None:intergenic |
| ATATGTCATAGGCAACGCCG+CGG | 0.783643 | 4.3:+11051730 | MS.gene030905:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATAAAAAATCGTATATA+AGG | + | chr4.3:11052854-11052873 | MS.gene030905:CDS | 15.0% |
| !! | AATATAAGCAAAGAAAAGAA+CGG | - | chr4.3:11052062-11052081 | None:intergenic | 20.0% |
| !!! | TTTATTTATCTTTTCACTTG+TGG | + | chr4.3:11052528-11052547 | MS.gene030905:CDS | 20.0% |
| ! | AAGGAATATGTTAATAGCAA+TGG | - | chr4.3:11052824-11052843 | None:intergenic | 25.0% |
| ! | AATTGGAATTTCAGCTTATT+GGG | + | chr4.3:11052651-11052670 | MS.gene030905:CDS | 25.0% |
| ! | ATAAAGTAGAAATCGACAAA+AGG | - | chr4.3:11052513-11052532 | None:intergenic | 25.0% |
| ! | ATTATCTTCATAGTAATTGC+TGG | + | chr4.3:11051962-11051981 | MS.gene030905:CDS | 25.0% |
| ! | TAAGGAGATATTATTCAAGT+GGG | + | chr4.3:11052566-11052585 | MS.gene030905:CDS | 25.0% |
| ! | TTAATAGCAATGGATAAAGA+AGG | - | chr4.3:11052814-11052833 | None:intergenic | 25.0% |
| !! | GTTCTTTTCTTTGCTTATAT+TGG | + | chr4.3:11052061-11052080 | MS.gene030905:CDS | 25.0% |
| !! | TTTTATCAATAGTTCCAAGA+AGG | - | chr4.3:11052843-11052862 | None:intergenic | 25.0% |
| !!! | TTGATTATTGGTTCTTCAAT+TGG | + | chr4.3:11052634-11052653 | MS.gene030905:CDS | 25.0% |
| AAGGAGATATTATTCAAGTG+GGG | + | chr4.3:11052567-11052586 | MS.gene030905:CDS | 30.0% | |
| ACTACTATACGAAAATCATC+AGG | - | chr4.3:11051803-11051822 | None:intergenic | 30.0% | |
| CAATTGGAATTTCAGCTTAT+TGG | + | chr4.3:11052650-11052669 | MS.gene030905:CDS | 30.0% | |
| CGTATATAAGGTTTACGATT+TGG | + | chr4.3:11052866-11052885 | MS.gene030905:CDS | 30.0% | |
| CTAATAGTAGTGAGCATAAT+TGG | + | chr4.3:11052674-11052693 | MS.gene030905:CDS | 30.0% | |
| CTACTATACGAAAATCATCA+GGG | - | chr4.3:11051802-11051821 | None:intergenic | 30.0% | |
| GCTATTAACATATTCCTTCT+TGG | + | chr4.3:11052826-11052845 | MS.gene030905:CDS | 30.0% | |
| GTAAGGAGATATTATTCAAG+TGG | + | chr4.3:11052565-11052584 | MS.gene030905:CDS | 30.0% | |
| GTTAGCTAGAATACTAAGAT+CGG | - | chr4.3:11052491-11052510 | None:intergenic | 30.0% | |
| ! | AGTGAAGTCATTGAAGTTTT+CGG | - | chr4.3:11052005-11052024 | None:intergenic | 30.0% |
| ! | TGGTATACTATGTGCTATTA+GGG | + | chr4.3:11052902-11052921 | MS.gene030905:CDS | 30.0% |
| ! | TTGGTATACTATGTGCTATT+AGG | + | chr4.3:11052901-11052920 | MS.gene030905:CDS | 30.0% |
| AAAGGAACTCCCCATAATTT+AGG | - | chr4.3:11052778-11052797 | None:intergenic | 35.0% | |
| AATTTAGGCTTCTTTGCCAT+TGG | - | chr4.3:11052763-11052782 | None:intergenic | 35.0% | |
| AGTAGTGAGCATAATTGGAT+TGG | + | chr4.3:11052679-11052698 | MS.gene030905:CDS | 35.0% | |
| ATACAATCTTTGCTCCTTTG+TGG | + | chr4.3:11052704-11052723 | MS.gene030905:CDS | 35.0% | |
| ATATTCAAGGAGGATGTTTC+CGG | - | chr4.3:11051714-11051733 | None:intergenic | 35.0% | |
| ATCCTCCTTGAATATGTCAT+AGG | + | chr4.3:11051719-11051738 | MS.gene030905:CDS | 35.0% | |
| ATTGAGATCGTAGCATTCAT+AGG | - | chr4.3:11052436-11052455 | None:intergenic | 35.0% | |
| ATTGATCCAACTAGACCAAT+AGG | - | chr4.3:11052142-11052161 | None:intergenic | 35.0% | |
| CTTTGATGCAGTTTCAACTA+TGG | + | chr4.3:11052084-11052103 | MS.gene030905:CDS | 35.0% | |
| GATAAGAGTAAACATAGCAG+TGG | + | chr4.3:11052958-11052977 | MS.gene030905:CDS | 35.0% | |
| GCAAAGAAGCCTAAATTATG+GGG | + | chr4.3:11052766-11052785 | MS.gene030905:CDS | 35.0% | |
| GCTAAGTACATCGTTTCATT+AGG | + | chr4.3:11052283-11052302 | MS.gene030905:CDS | 35.0% | |
| GGCAAAGAAGCCTAAATTAT+GGG | + | chr4.3:11052765-11052784 | MS.gene030905:CDS | 35.0% | |
| TAAATTATGGGGAGTTCCTT+TGG | + | chr4.3:11052777-11052796 | MS.gene030905:CDS | 35.0% | |
| TGGCAAAGAAGCCTAAATTA+TGG | + | chr4.3:11052764-11052783 | MS.gene030905:CDS | 35.0% | |
| TTCAATGACTTCACTCCTTT+CGG | + | chr4.3:11052010-11052029 | MS.gene030905:CDS | 35.0% | |
| TTGCTCCTTTGTGGTTTATA+GGG | + | chr4.3:11052713-11052732 | MS.gene030905:CDS | 35.0% | |
| TTTGCTCCTTTGTGGTTTAT+AGG | + | chr4.3:11052712-11052731 | MS.gene030905:CDS | 35.0% | |
| ! | ATAAGGTTTACGATTTGGAC+AGG | + | chr4.3:11052871-11052890 | MS.gene030905:CDS | 35.0% |
| ! | GTCATTGAAGTTTTCGGTTT+TGG | - | chr4.3:11051999-11052018 | None:intergenic | 35.0% |
| ! | GTTTCATTAGGTGCTTTGAA+AGG | + | chr4.3:11052295-11052314 | MS.gene030905:CDS | 35.0% |
| ! | TAAGGTTTACGATTTGGACA+GGG | + | chr4.3:11052872-11052891 | MS.gene030905:CDS | 35.0% |
| ! | TGGCATTAGCACTTTTAGTA+AGG | + | chr4.3:11052548-11052567 | MS.gene030905:CDS | 35.0% |
| !! | GTGTGTCTTGTGTTGATTAT+TGG | + | chr4.3:11052622-11052641 | MS.gene030905:CDS | 35.0% |
| !! | TGCTTTGAAAGGAATGACAA+CGG | + | chr4.3:11052306-11052325 | MS.gene030905:CDS | 35.0% |
| !!! | TCTTTGGCTTTTTGTTCCAA+TGG | + | chr4.3:11052744-11052763 | MS.gene030905:CDS | 35.0% |
| ACTAGAGCTCCAATAGCAAT+AGG | - | chr4.3:11051860-11051879 | None:intergenic | 40.0% | |
| ATGGATAAAGAAGGTAGCCA+AGG | - | chr4.3:11052805-11052824 | None:intergenic | 40.0% | |
| CAAGTGGGGTAACTACAAAA+GGG | + | chr4.3:11052581-11052600 | MS.gene030905:CDS | 40.0% | |
| CAATAGCAATAGGGTCAAGA+TGG | - | chr4.3:11051850-11051869 | None:intergenic | 40.0% | |
| CAATAGGAATGTCTCTACCA+GGG | - | chr4.3:11052126-11052145 | None:intergenic | 40.0% | |
| CACAATATGAACCCTGACTA+TGG | + | chr4.3:11051824-11051843 | MS.gene030905:CDS | 40.0% | |
| CATAGTCAGGGTTCATATTG+TGG | - | chr4.3:11051826-11051845 | None:intergenic | 40.0% | |
| CATCTTGACCCTATTGCTAT+TGG | + | chr4.3:11051848-11051867 | MS.gene030905:CDS | 40.0% | |
| CGTTGCCTATGACATATTCA+AGG | - | chr4.3:11051727-11051746 | None:intergenic | 40.0% | |
| CTAGAGCTCCAATAGCAATA+GGG | - | chr4.3:11051859-11051878 | None:intergenic | 40.0% | |
| GCACTAAAAGCAACTGAGAA+AGG | - | chr4.3:11052247-11052266 | None:intergenic | 40.0% | |
| GCTGAAGAAACTAAAAACCC+TGG | + | chr4.3:11052106-11052125 | MS.gene030905:CDS | 40.0% | |
| TCAAGTGGGGTAACTACAAA+AGG | + | chr4.3:11052580-11052599 | MS.gene030905:CDS | 40.0% | |
| TCAATGACTTCACTCCTTTC+GGG | + | chr4.3:11052011-11052030 | MS.gene030905:CDS | 40.0% | |
| TCATCAACAAGAGCAAACCA+AGG | - | chr4.3:11052400-11052419 | None:intergenic | 40.0% | |
| TGAAGATAATGACAGCCATG+TGG | - | chr4.3:11051952-11051971 | None:intergenic | 40.0% | |
| TGAGAAGCAATGGAACAAGA+TGG | + | chr4.3:11052996-11053015 | MS.gene030905:CDS | 40.0% | |
| TGCCTATGACATATTCAAGG+AGG | - | chr4.3:11051724-11051743 | None:intergenic | 40.0% | |
| TGTGGCTATGTAGTTGAAGA+TGG | - | chr4.3:11051924-11051943 | None:intergenic | 40.0% | |
| ! | ATCAGGGTTTTTGTTGCAGA+GGG | - | chr4.3:11051786-11051805 | None:intergenic | 40.0% |
| ! | GACATTCCTATTGGTCTAGT+TGG | + | chr4.3:11052133-11052152 | MS.gene030905:CDS | 40.0% |
| ! | GCTCTTGTTGATGAAAGAAC+TGG | + | chr4.3:11052406-11052425 | MS.gene030905:CDS | 40.0% |
| ! | TAGTGCTGTTGGAATGGATT+GGG | + | chr4.3:11052261-11052280 | MS.gene030905:CDS | 40.0% |
| ! | TTAGTGCTGTTGGAATGGAT+TGG | + | chr4.3:11052260-11052279 | MS.gene030905:CDS | 40.0% |
| !! | AGGAATGACAACGGTTTTGT+TGG | + | chr4.3:11052315-11052334 | MS.gene030905:CDS | 40.0% |
| !! | TGCTTTTAGTGCTGTTGGAA+TGG | + | chr4.3:11052255-11052274 | MS.gene030905:CDS | 40.0% |
| !! | TTTGGTGCTGTAAACTGCAA+GGG | - | chr4.3:11051894-11051913 | None:intergenic | 40.0% |
| !!! | TCAGTTGCTTTTAGTGCTGT+TGG | + | chr4.3:11052250-11052269 | MS.gene030905:CDS | 40.0% |
| CAATGGAACAAGATGGAGCA+AGG | + | chr4.3:11053003-11053022 | MS.gene030905:CDS | 45.0% | |
| CATAGCCACAATGTTCCACA+TGG | + | chr4.3:11051934-11051953 | MS.gene030905:CDS | 45.0% | |
| CCAATAGGAATGTCTCTACC+AGG | - | chr4.3:11052127-11052146 | None:intergenic | 45.0% | |
| CCAGTCCCTATAAACCACAA+AGG | - | chr4.3:11052721-11052740 | None:intergenic | 45.0% | |
| CCTGGTAGAGACATTCCTAT+TGG | + | chr4.3:11052124-11052143 | MS.gene030905:CDS | 45.0% | |
| CCTTTGTGGTTTATAGGGAC+TGG | + | chr4.3:11052718-11052737 | MS.gene030905:CDS | 45.0% | |
| CTTGCAGTTTACAGCACCAA+AGG | + | chr4.3:11051893-11051912 | MS.gene030905:CDS | 45.0% | |
| GATTTGGACAGGGTTTCTCT+TGG | + | chr4.3:11052882-11052901 | MS.gene030905:CDS | 45.0% | |
| GCATGGAATGGTCAGTTCTT+CGG | + | chr4.3:11052036-11052055 | MS.gene030905:CDS | 45.0% | |
| GTTGAAGATGGAAGAGCCTT+TGG | - | chr4.3:11051912-11051931 | None:intergenic | 45.0% | |
| TCAACAAGAGCAAACCAAGG+TGG | - | chr4.3:11052397-11052416 | None:intergenic | 45.0% | |
| TTCCATTGCTTCTCAACCTC+CGG | - | chr4.3:11052991-11053010 | None:intergenic | 45.0% | |
| TTTGTTGCCTTCATAGCTGC+CGG | + | chr4.3:11051692-11051711 | MS.gene030905:CDS | 45.0% | |
| ! | CATCAGGGTTTTTGTTGCAG+AGG | - | chr4.3:11051787-11051806 | None:intergenic | 45.0% |
| ! | TTATAGGGACTGGTGCTCTT+TGG | + | chr4.3:11052728-11052747 | MS.gene030905:CDS | 45.0% |
| !! | ACATAGCAGTGGTTCTGATC+CGG | + | chr4.3:11052969-11052988 | MS.gene030905:CDS | 45.0% |
| !! | CTTTGGTGCTGTAAACTGCA+AGG | - | chr4.3:11051895-11051914 | None:intergenic | 45.0% |
| !! | GTTTTGTTGGTTAGCGCTGT+TGG | + | chr4.3:11052328-11052347 | MS.gene030905:CDS | 45.0% |
| ACCATTCCATGCAACCCGAA+AGG | - | chr4.3:11052028-11052047 | None:intergenic | 50.0% | |
| ATATGTCATAGGCAACGCCG+CGG | + | chr4.3:11051730-11051749 | MS.gene030905:CDS | 50.0% | |
| ATCCGGAGGTTGAGAAGCAA+TGG | + | chr4.3:11052986-11053005 | MS.gene030905:CDS | 50.0% | |
| GAAGGTAGCCAAGGAACCAA+AGG | - | chr4.3:11052796-11052815 | None:intergenic | 50.0% | |
| GACAGCCATGTGGAACATTG+TGG | - | chr4.3:11051942-11051961 | None:intergenic | 50.0% | |
| GATGTTTCCGGCAGCTATGA+AGG | - | chr4.3:11051702-11051721 | None:intergenic | 50.0% | |
| GGTCAAGATGGCCATAGTCA+GGG | - | chr4.3:11051838-11051857 | None:intergenic | 50.0% | |
| GTAAACTGCAAGGGCTGTGA+TGG | - | chr4.3:11051885-11051904 | None:intergenic | 50.0% | |
| GTACTCACATGATGCCACCT+TGG | + | chr4.3:11052380-11052399 | MS.gene030905:CDS | 50.0% | |
| GTTGCAGAGGGTGGCAAAAT+AGG | - | chr4.3:11051774-11051793 | None:intergenic | 50.0% | |
| ! | AGGGTTTTTGTTGCAGAGGG+TGG | - | chr4.3:11051783-11051802 | None:intergenic | 50.0% |
| !! | GCAACTGAGAAAGGAGCATC+AGG | - | chr4.3:11052238-11052257 | None:intergenic | 50.0% |
| !! | TCCTTTCGGGTTGCATGGAA+TGG | + | chr4.3:11052024-11052043 | MS.gene030905:CDS | 50.0% |
| !! | TTCACTCCTTTCGGGTTGCA+TGG | + | chr4.3:11052019-11052038 | MS.gene030905:CDS | 50.0% |
| GCAGAGGGTGGCAAAATAGG+AGG | - | chr4.3:11051771-11051790 | None:intergenic | 55.0% | |
| GGGTCAAGATGGCCATAGTC+AGG | - | chr4.3:11051839-11051858 | None:intergenic | 55.0% | |
| ! | GGGGAGTTCCTTTGGTTCCT+TGG | + | chr4.3:11052785-11052804 | MS.gene030905:CDS | 55.0% |
| !! | TAGCAGTGGTTCTGATCCGG+AGG | + | chr4.3:11052972-11052991 | MS.gene030905:CDS | 55.0% |
| GGTCCATGATCGAGCTACCG+CGG | - | chr4.3:11051750-11051769 | None:intergenic | 60.0% | |
| ACGCCGCGGTAGCTCGATCA+TGG | + | chr4.3:11051744-11051763 | MS.gene030905:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11051683 | 11053068 | 11051683 | ID=MS.gene030905 |
| chr4.3 | mRNA | 11051683 | 11053068 | 11051683 | ID=MS.gene030905.t1;Parent=MS.gene030905 |
| chr4.3 | exon | 11051683 | 11053068 | 11051683 | ID=MS.gene030905.t1.exon1;Parent=MS.gene030905.t1 |
| chr4.3 | CDS | 11051683 | 11053068 | 11051683 | ID=cds.MS.gene030905.t1;Parent=MS.gene030905.t1 |
| Gene Sequence |
| Protein sequence |
