Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030906.t1 | XP_003630015.1 | 89.1 | 594 | 65 | 0 | 6 | 599 | 11 | 604 | 2.50E-305 | 1057.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030906.t1 | Q84MA5 | 66.9 | 593 | 186 | 1 | 5 | 597 | 8 | 590 | 1.1e-227 | 790.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030906.t1 | G7L9L7 | 89.1 | 594 | 65 | 0 | 6 | 599 | 11 | 604 | 1.8e-305 | 1057.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030906 | MS.gene007812 | PPI |
| MS.gene41792 | MS.gene030906 | PPI |
| MS.gene38964 | MS.gene030906 | PPI |
| MS.gene030906 | MS.gene08144 | PPI |
| MS.gene042480 | MS.gene030906 | PPI |
| MS.gene38965 | MS.gene030906 | PPI |
| MS.gene030906 | MS.gene041367 | PPI |
| MS.gene030906 | MS.gene00402 | PPI |
| MS.gene58674 | MS.gene030906 | PPI |
| MS.gene032361 | MS.gene030906 | PPI |
| MS.gene030906 | MS.gene47297 | PPI |
| MS.gene08148 | MS.gene030906 | PPI |
| MS.gene042491 | MS.gene030906 | PPI |
| MS.gene030906 | MS.gene08137 | PPI |
| MS.gene030906 | MS.gene32277 | PPI |
| MS.gene49831 | MS.gene030906 | PPI |
| MS.gene41790 | MS.gene030906 | PPI |
| MS.gene007811 | MS.gene030906 | PPI |
| MS.gene030906 | MS.gene073450 | PPI |
| MS.gene41795 | MS.gene030906 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030906.t1 | MTR_8g089320 | 89.020 | 592 | 65 | 0 | 8 | 599 | 13 | 604 | 0.0 | 1082 |
| MS.gene030906.t1 | MTR_8g089360 | 73.693 | 574 | 147 | 3 | 16 | 589 | 26 | 595 | 0.0 | 864 |
| MS.gene030906.t1 | MTR_8g089360 | 73.693 | 574 | 147 | 3 | 16 | 589 | 9 | 578 | 0.0 | 864 |
| MS.gene030906.t1 | MTR_8g089340 | 85.466 | 461 | 66 | 1 | 144 | 603 | 1 | 461 | 0.0 | 777 |
| MS.gene030906.t1 | MTR_1g030660 | 65.455 | 550 | 189 | 1 | 23 | 572 | 23 | 571 | 0.0 | 757 |
| MS.gene030906.t1 | MTR_2g035430 | 56.048 | 587 | 253 | 1 | 1 | 582 | 1 | 587 | 0.0 | 693 |
| MS.gene030906.t1 | MTR_8g461380 | 51.250 | 560 | 271 | 2 | 14 | 572 | 26 | 584 | 0.0 | 575 |
| MS.gene030906.t1 | MTR_1g111740 | 43.805 | 573 | 305 | 4 | 23 | 583 | 6 | 573 | 1.11e-155 | 459 |
| MS.gene030906.t1 | MTR_4g099270 | 41.199 | 534 | 299 | 6 | 46 | 569 | 1 | 529 | 5.21e-128 | 387 |
| MS.gene030906.t1 | MTR_4g099270 | 44.670 | 394 | 212 | 3 | 29 | 418 | 5 | 396 | 2.64e-109 | 334 |
| MS.gene030906.t1 | MTR_4g099270 | 39.336 | 422 | 241 | 6 | 158 | 569 | 1 | 417 | 2.03e-90 | 286 |
| MS.gene030906.t1 | MTR_4g099270 | 44.884 | 303 | 163 | 2 | 29 | 327 | 5 | 307 | 7.30e-86 | 270 |
| MS.gene030906.t1 | MTR_6g027630 | 34.988 | 423 | 261 | 4 | 29 | 441 | 6 | 424 | 1.23e-76 | 254 |
| MS.gene030906.t1 | MTR_8g089342 | 91.803 | 122 | 10 | 0 | 12 | 133 | 18 | 139 | 2.24e-76 | 239 |
| MS.gene030906.t1 | MTR_6g027630 | 34.988 | 423 | 261 | 4 | 29 | 441 | 6 | 424 | 4.26e-76 | 254 |
| MS.gene030906.t1 | MTR_6g027680 | 33.886 | 422 | 266 | 3 | 27 | 441 | 12 | 427 | 7.24e-74 | 247 |
| MS.gene030906.t1 | MTR_6g027660 | 33.796 | 432 | 267 | 5 | 20 | 441 | 3 | 425 | 1.39e-73 | 248 |
| MS.gene030906.t1 | MTR_7g086510 | 35.980 | 403 | 247 | 4 | 46 | 441 | 21 | 419 | 6.99e-72 | 243 |
| MS.gene030906.t1 | MTR_6g027650 | 33.412 | 425 | 258 | 5 | 29 | 441 | 6 | 417 | 1.12e-71 | 242 |
| MS.gene030906.t1 | MTR_7g086610 | 37.076 | 383 | 232 | 3 | 67 | 441 | 32 | 413 | 1.95e-71 | 241 |
| MS.gene030906.t1 | MTR_6g034535 | 43.284 | 268 | 136 | 5 | 323 | 577 | 49 | 313 | 1.61e-69 | 228 |
| MS.gene030906.t1 | MTR_6g034535 | 42.708 | 96 | 30 | 1 | 93 | 188 | 19 | 89 | 4.66e-15 | 77.0 |
| MS.gene030906.t1 | MTR_7g007850 | 29.942 | 521 | 343 | 8 | 60 | 566 | 42 | 554 | 2.53e-65 | 224 |
| MS.gene030906.t1 | MTR_7g007850 | 28.312 | 551 | 343 | 9 | 60 | 566 | 42 | 584 | 3.32e-61 | 214 |
| MS.gene030906.t1 | MTR_7g007850 | 32.474 | 388 | 255 | 4 | 60 | 441 | 42 | 428 | 4.38e-57 | 200 |
| MS.gene030906.t1 | MTR_7g007850 | 32.474 | 388 | 255 | 4 | 60 | 441 | 42 | 428 | 7.35e-57 | 200 |
| MS.gene030906.t1 | MTR_6g027630 | 34.211 | 342 | 212 | 3 | 110 | 441 | 1 | 339 | 1.02e-55 | 197 |
| MS.gene030906.t1 | MTR_6g027670 | 34.810 | 158 | 103 | 0 | 284 | 441 | 1 | 158 | 2.31e-27 | 112 |
| MS.gene030906.t1 | MTR_2g064760 | 89.286 | 28 | 3 | 0 | 485 | 512 | 14 | 41 | 4.17e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030906.t1 | AT4G21120 | 66.723 | 595 | 188 | 1 | 5 | 599 | 8 | 592 | 0.0 | 829 |
| MS.gene030906.t1 | AT2G34960 | 58.333 | 564 | 233 | 2 | 4 | 566 | 1 | 563 | 0.0 | 679 |
| MS.gene030906.t1 | AT4G21120 | 64.381 | 452 | 151 | 1 | 148 | 599 | 1 | 442 | 0.0 | 602 |
| MS.gene030906.t1 | AT1G17120 | 53.309 | 559 | 260 | 1 | 8 | 566 | 22 | 579 | 0.0 | 589 |
| MS.gene030906.t1 | AT5G04770 | 41.591 | 553 | 303 | 5 | 25 | 562 | 15 | 562 | 1.79e-143 | 428 |
| MS.gene030906.t1 | AT3G10600 | 40.708 | 565 | 305 | 7 | 22 | 566 | 11 | 565 | 9.23e-143 | 426 |
| MS.gene030906.t1 | AT5G04770 | 42.708 | 384 | 210 | 2 | 25 | 398 | 15 | 398 | 3.47e-105 | 324 |
| MS.gene030906.t1 | AT3G10600 | 39.161 | 429 | 231 | 7 | 158 | 566 | 1 | 419 | 1.04e-98 | 308 |
| MS.gene030906.t1 | AT5G04770 | 40.000 | 420 | 232 | 5 | 158 | 562 | 1 | 415 | 1.89e-93 | 294 |
| MS.gene030906.t1 | AT5G36940 | 35.751 | 386 | 235 | 4 | 66 | 441 | 28 | 410 | 8.79e-73 | 245 |
| MS.gene030906.t1 | AT3G03720 | 33.666 | 401 | 257 | 3 | 48 | 441 | 7 | 405 | 2.32e-70 | 238 |
| MS.gene030906.t1 | AT1G58030 | 33.763 | 388 | 244 | 4 | 64 | 441 | 37 | 421 | 6.71e-67 | 230 |
| MS.gene030906.t1 | AT1G05940 | 28.164 | 561 | 373 | 7 | 40 | 583 | 21 | 568 | 8.73e-64 | 220 |
| MS.gene030906.t1 | AT1G05940 | 28.738 | 515 | 344 | 6 | 40 | 537 | 21 | 529 | 5.33e-60 | 209 |
| MS.gene030906.t1 | AT1G05940 | 30.679 | 427 | 283 | 4 | 59 | 473 | 40 | 465 | 6.25e-59 | 205 |
| MS.gene030906.t1 | AT1G05940 | 27.093 | 454 | 303 | 5 | 146 | 583 | 9 | 450 | 2.22e-42 | 159 |
Find 143 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTCCTATTGGTCTTAT+TGG | 0.099434 | 4.3:+11099068 | MS.gene030906:CDS |
| CAATTGGAATTTCAGCTTAT+TGG | 0.122057 | 4.3:+11099585 | MS.gene030906:CDS |
| TATTCTCAGTTTACGCCTTT+TGG | 0.183223 | 4.3:+11098945 | MS.gene030906:CDS |
| GTGTGTCTTGTGTTGATTAT+TGG | 0.196899 | 4.3:+11099557 | MS.gene030906:CDS |
| GTTATTAACTTATTCCTTCT+TGG | 0.197082 | 4.3:+11099758 | MS.gene030906:CDS |
| CTTGTATACTATGTGCTATT+AGG | 0.206726 | 4.3:+11099833 | MS.gene030906:CDS |
| AATTGGAATTTCAGCTTATT+GGG | 0.231227 | 4.3:+11099586 | MS.gene030906:CDS |
| GCTTGTGGCCTTAGCACTTT+TGG | 0.268638 | 4.3:+11099478 | MS.gene030906:CDS |
| GGGGAGTTCCTTTGGTTCCT+TGG | 0.281218 | 4.3:+11099717 | MS.gene030906:CDS |
| TTGATAGAAAATCGTATATA+AGG | 0.283159 | 4.3:+11099786 | MS.gene030906:CDS |
| ACTATTATACGGAAATAGTT+AGG | 0.294212 | 4.3:-11098735 | None:intergenic |
| CATAACATGAACCCTGATTA+TGG | 0.301559 | 4.3:+11098759 | MS.gene030906:CDS |
| TTGTATACTATGTGCTATTA+GGG | 0.303775 | 4.3:+11099834 | MS.gene030906:CDS |
| TCATGTTATGAACTATTATA+CGG | 0.324528 | 4.3:-11098746 | None:intergenic |
| TGCGGAGCTGGTGGAGATTA+AGG | 0.326488 | 4.3:+11097553 | MS.gene030906:CDS |
| TGGCAAAGAAGCCTAAATTA+TGG | 0.332142 | 4.3:+11099696 | MS.gene030906:CDS |
| CTTCTCTTCATAGTAATTGC+TGG | 0.335458 | 4.3:+11098897 | MS.gene030906:CDS |
| AAAGGAACTCCCCATAATTT+AGG | 0.346807 | 4.3:-11099707 | None:intergenic |
| AGGTCAAGATGGCCATAATC+AGG | 0.355588 | 4.3:-11098771 | None:intergenic |
| TAAATTATGGGGAGTTCCTT+TGG | 0.356075 | 4.3:+11099709 | MS.gene030906:CDS |
| CGTATATAAGGTTTGCGGTT+TGG | 0.357696 | 4.3:+11099798 | MS.gene030906:CDS |
| GCCAAGTACATTATTTCATT+AGG | 0.357842 | 4.3:+11099218 | MS.gene030906:CDS |
| CTGAGAATAGTTCTCGGGTT+TGG | 0.377128 | 4.3:-11098931 | None:intergenic |
| GGCTAGGGAGCAAGCAGGTC+CGG | 0.379687 | 4.3:+11097682 | MS.gene030906:CDS |
| AGAGCCTTTAGTGCTGTAAA+TGG | 0.380012 | 4.3:-11098832 | None:intergenic |
| TTCCATTGCTTCTCAACCTC+CGG | 0.382100 | 4.3:-11099920 | None:intergenic |
| ATACTCAAGGAGGATGTTCC+CGG | 0.387864 | 4.3:-11098646 | None:intergenic |
| GGCAAAGAAGCCTAAATTAT+GGG | 0.393362 | 4.3:+11099697 | MS.gene030906:CDS |
| ATTGAGATTGTAGCATTCAT+AGG | 0.394274 | 4.3:-11099368 | None:intergenic |
| TCAAGTGGGGTAACTACAAA+AGG | 0.399563 | 4.3:+11099515 | MS.gene030906:CDS |
| ATTGGTTCAGTTGTCGGGTC+TGG | 0.399959 | 4.3:+11097635 | MS.gene030906:CDS |
| TGGTGGGACTTGATGTGGTT+TGG | 0.403047 | 4.3:+11097611 | MS.gene030906:CDS |
| TTGGCATTGGTTCAGTTGTC+GGG | 0.404173 | 4.3:+11097630 | MS.gene030906:CDS |
| TTGATTATTGGATCTTCAAT+TGG | 0.407894 | 4.3:+11099569 | MS.gene030906:CDS |
| AGGGAGATGGCAACAGTTGA+TGG | 0.415607 | 4.3:+11097389 | None:intergenic |
| TAGTGCTGTTGGAATGGATT+GGG | 0.417491 | 4.3:+11099196 | MS.gene030906:CDS |
| AATTTAGGCTTCTTTGCCAT+TGG | 0.418140 | 4.3:-11099692 | None:intergenic |
| ATACATATCAAGTTATCAAT+TGG | 0.420768 | 4.3:-11099993 | None:intergenic |
| TCTTGACCTTGTTGCTGTTG+TGG | 0.421701 | 4.3:+11098785 | MS.gene030906:CDS |
| TTTGGCATTGGTTCAGTTGT+CGG | 0.423683 | 4.3:+11097629 | MS.gene030906:CDS |
| AGATGAAGAAGACGCTGAAT+TGG | 0.426669 | 4.3:+11097591 | MS.gene030906:CDS |
| GCTGTGGAAATACCTGTTGC+AGG | 0.427756 | 4.3:+11097773 | MS.gene030906:CDS |
| GCTCTTGTTGATGAAAGAAC+AGG | 0.435974 | 4.3:+11099341 | MS.gene030906:CDS |
| ATAAGGTTTGCGGTTTGGAC+AGG | 0.438702 | 4.3:+11099803 | MS.gene030906:CDS |
| GACTTGATGTGGTTTGGCAT+TGG | 0.438927 | 4.3:+11097617 | MS.gene030906:CDS |
| ATTGAGCCAATAAGACCAAT+AGG | 0.439105 | 4.3:-11099074 | None:intergenic |
| AACTGTGAGCATGGATGGAT+TGG | 0.445839 | 4.3:+11099611 | MS.gene030906:CDS |
| GTGTTGTCCTTTGTCGTCTC+CGG | 0.450135 | 4.3:+11097710 | MS.gene030906:CDS |
| GATGTTCCCGGCCGCTATAA+AGG | 0.452892 | 4.3:-11098634 | None:intergenic |
| GGAGGAGTCGTTTAAGAGTT+GGG | 0.454594 | 4.3:+11097457 | MS.gene030906:CDS |
| CTTGCCATTTACAGCACTAA+AGG | 0.456544 | 4.3:+11098828 | MS.gene030906:CDS |
| TAATTATAATTACCTGCAAC+AGG | 0.459094 | 4.3:-11097785 | None:intergenic |
| GCACTAAAAGCAACAGAGAA+AGG | 0.459176 | 4.3:-11099179 | None:intergenic |
| TTTGTTTATCTTTATGCTTG+TGG | 0.460284 | 4.3:+11099463 | MS.gene030906:CDS |
| CGGAGGAGTCGTTTAAGAGT+TGG | 0.463490 | 4.3:+11097456 | MS.gene030906:CDS |
| ACCTAATGAAATAATGTACT+TGG | 0.470231 | 4.3:-11099219 | None:intergenic |
| TTAGTGCTGTTGGAATGGAT+TGG | 0.470694 | 4.3:+11099195 | MS.gene030906:CDS |
| TGCTTACCGGACTTGAGGCT+AGG | 0.472425 | 4.3:+11097666 | MS.gene030906:CDS |
| CCTGGTAGAGACATTCCTAT+TGG | 0.474972 | 4.3:+11099059 | MS.gene030906:CDS |
| AGATAACAAAGCGGAGATAC+CGG | 0.475452 | 4.3:-11097729 | None:intergenic |
| CTATTATACGGAAATAGTTA+GGG | 0.475715 | 4.3:-11098734 | None:intergenic |
| CAACTCTTAAACGACTCCTC+CGG | 0.477205 | 4.3:-11097455 | None:intergenic |
| ACATAGCAGTGGCTCTGATC+CGG | 0.485027 | 4.3:+11099901 | MS.gene030906:CDS |
| AACTCTTAAACGACTCCTCC+GGG | 0.489247 | 4.3:-11097454 | None:intergenic |
| ATCCACTGATCATGCGGAGC+TGG | 0.490160 | 4.3:+11097541 | MS.gene030906:CDS |
| CACTGATCATGCGGAGCTGG+TGG | 0.500362 | 4.3:+11097544 | MS.gene030906:CDS |
| AAACGATCCTTCAACCGAAA+AGG | 0.503749 | 4.3:-11097509 | None:intergenic |
| AGTTGAGCTAGGAGACTTTG+TGG | 0.506976 | 4.3:+11098611 | MS.gene030906:CDS |
| ACGCCGCCGTAGCACGATCA+TGG | 0.508863 | 4.3:+11098679 | MS.gene030906:CDS |
| AAAATCGTATATAAGGTTTG+CGG | 0.509479 | 4.3:+11099793 | MS.gene030906:CDS |
| CGTAAACTGAGAATAGTTCT+CGG | 0.509480 | 4.3:-11098937 | None:intergenic |
| CCAATAGGAATGTCTCTACC+AGG | 0.509969 | 4.3:-11099059 | None:intergenic |
| TTCTATCAATAGATCCAAGA+AGG | 0.516981 | 4.3:-11099772 | None:intergenic |
| CAGTTGATGGAGTACGGAAG+AGG | 0.523221 | 4.3:+11097402 | MS.gene030906:CDS |
| TTAATAACAATAGATAAAGA+AGG | 0.526151 | 4.3:-11099743 | None:intergenic |
| GCATACTTAAAAGTTGAGCT+AGG | 0.528109 | 4.3:+11098600 | MS.gene030906:CDS |
| GCAGAGGGTAGCAAAATAAG+AGG | 0.528621 | 4.3:-11098703 | None:intergenic |
| GGGCTAACTGTGAGCATGGA+TGG | 0.531584 | 4.3:+11099606 | MS.gene030906:CDS |
| TAAGGTTTGCGGTTTGGACA+GGG | 0.541476 | 4.3:+11099804 | MS.gene030906:CDS |
| TTTGTGGCCTTTATAGCGGC+CGG | 0.542920 | 4.3:+11098627 | MS.gene030906:CDS |
| CTAATAGCACATAGTATACA+AGG | 0.543713 | 4.3:-11099832 | None:intergenic |
| GTGAGGCGTTACTATTCAAG+TGG | 0.544235 | 4.3:+11099500 | MS.gene030906:CDS |
| CAACAGCAACAAGGTCAAGA+TGG | 0.545076 | 4.3:-11098782 | None:intergenic |
| CTTTAGTGCTGTAAATGGCA+AGG | 0.545192 | 4.3:-11098827 | None:intergenic |
| ACAAAGGACAACACAACTGC+CGG | 0.545347 | 4.3:-11097701 | None:intergenic |
| TGGCAACAGTTGATGGAGTA+CGG | 0.547405 | 4.3:+11097396 | MS.gene030906:CDS |
| ACCATACCATGAAACCCAAA+AGG | 0.547517 | 4.3:-11098960 | None:intergenic |
| TGAAGAAGACGCTGAATTGG+TGG | 0.547778 | 4.3:+11097594 | MS.gene030906:CDS |
| TGCAGTTTCAACAATGGCTG+AGG | 0.548532 | 4.3:+11099025 | MS.gene030906:CDS |
| AGTTGATGGAGTACGGAAGA+GGG | 0.549210 | 4.3:+11097403 | MS.gene030906:CDS |
| GTAAACTGAGAATAGTTCTC+GGG | 0.549675 | 4.3:-11098936 | None:intergenic |
| CACCAGCTCCGCATGATCAG+TGG | 0.550498 | 4.3:-11097543 | None:intergenic |
| GCTTACCGGACTTGAGGCTA+GGG | 0.557372 | 4.3:+11097667 | MS.gene030906:CDS |
| ATCCGGAGGTTGAGAAGCAA+TGG | 0.560522 | 4.3:+11099918 | MS.gene030906:CDS |
| GGAGATACCGGAGACGACAA+AGG | 0.565622 | 4.3:-11097717 | None:intergenic |
| CAAGTGGGGTAACTACAAAA+GGG | 0.569446 | 4.3:+11099516 | MS.gene030906:CDS |
| TTGTGGCCTTTATAGCGGCC+GGG | 0.569869 | 4.3:+11098628 | MS.gene030906:CDS |
| CTTTGATGCAGTTTCAACAA+TGG | 0.570876 | 4.3:+11099019 | MS.gene030906:CDS |
| TTTAAGAGTTGGGAAAACTA+CGG | 0.577286 | 4.3:+11097467 | MS.gene030906:CDS |
| AAACTACGGAAAATCTGTCA+TGG | 0.579172 | 4.3:+11097481 | MS.gene030906:CDS |
| TTTAGTGCTGTAAATGGCAA+GGG | 0.579804 | 4.3:-11098826 | None:intergenic |
| ATTTCATTAGGTGCTTTGAA+AGG | 0.582581 | 4.3:+11099230 | MS.gene030906:CDS |
| TGAATTGGTGGGACTTGATG+TGG | 0.584039 | 4.3:+11097606 | MS.gene030906:CDS |
| GTAAATGGCAAGGGTTGTGA+TGG | 0.589331 | 4.3:-11098817 | None:intergenic |
| CGAGGCGATGTAGTTGAAGA+CGG | 0.594430 | 4.3:-11098856 | None:intergenic |
| TATTGGGCTAACTGTGAGCA+TGG | 0.600598 | 4.3:+11099602 | MS.gene030906:CDS |
| CTTGAGGCTAGGGAGCAAGC+AGG | 0.600694 | 4.3:+11097677 | MS.gene030906:CDS |
| TGAGGCGTTACTATTCAAGT+GGG | 0.601081 | 4.3:+11099501 | MS.gene030906:CDS |
| TGAGAAGCAATGGAACAAGA+TGG | 0.601081 | 4.3:+11099928 | MS.gene030906:CDS |
| GTACTCACATGATGCCACCT+TGG | 0.601374 | 4.3:+11099315 | MS.gene030906:CDS |
| TTGCTCCCTAGCCTCAAGTC+CGG | 0.601610 | 4.3:-11097672 | None:intergenic |
| GGTCAAGATGGCCATAATCA+GGG | 0.602250 | 4.3:-11098770 | None:intergenic |
| ACGCCTCACCAAAAGTGCTA+AGG | 0.603382 | 4.3:-11099486 | None:intergenic |
| AGACTTTGTGGCCTTTATAG+CGG | 0.604630 | 4.3:+11098623 | MS.gene030906:CDS |
| GAAGGTAGCCAAGGAACCAA+AGG | 0.606519 | 4.3:-11099725 | None:intergenic |
| CTGTTACACAGAGTTTGCTG+TGG | 0.607651 | 4.3:+11097757 | MS.gene030906:CDS |
| GAAGAAGACGCTGAATTGGT+GGG | 0.611576 | 4.3:+11097595 | MS.gene030906:CDS |
| ATAGATAAAGAAGGTAGCCA+AGG | 0.615378 | 4.3:-11099734 | None:intergenic |
| AACAAGCACGTGGAAGAGCG+AGG | 0.615919 | 4.3:-11098874 | None:intergenic |
| GTGGAGATTAAGGCTCGTAG+TGG | 0.627815 | 4.3:+11097563 | MS.gene030906:CDS |
| AGAGGTCCATGATCGTGCTA+CGG | 0.630001 | 4.3:-11098685 | None:intergenic |
| TAGCAGTGGCTCTGATCCGG+AGG | 0.634941 | 4.3:+11099904 | MS.gene030906:CDS |
| CAATGGAACAAGATGGAGCA+AGG | 0.635963 | 4.3:+11099935 | MS.gene030906:CDS |
| TGCTTTGAAAGGAATGACAA+CGG | 0.638848 | 4.3:+11099241 | MS.gene030906:CDS |
| GAAACGATCCACTGATCATG+CGG | 0.640662 | 4.3:+11097535 | MS.gene030906:CDS |
| CGTTGCTTATAATATACTCA+AGG | 0.641365 | 4.3:-11098659 | None:intergenic |
| TGGAGATTAAGGCTCGTAGT+GGG | 0.642539 | 4.3:+11097564 | MS.gene030906:CDS |
| GCAAAGAAGCCTAAATTATG+GGG | 0.643860 | 4.3:+11099698 | MS.gene030906:CDS |
| GGTCCATGATCGTGCTACGG+CGG | 0.644699 | 4.3:-11098682 | None:intergenic |
| GATAAGAGTAAACATAGCAG+TGG | 0.647745 | 4.3:+11099890 | MS.gene030906:CDS |
| GTTGATGGAGTACGGAAGAG+GGG | 0.650485 | 4.3:+11097404 | MS.gene030906:CDS |
| GCTGAGGAAACTAAGAACCC+TGG | 0.654351 | 4.3:+11099041 | MS.gene030906:CDS |
| TGCTTATAATATACTCAAGG+AGG | 0.670617 | 4.3:-11098656 | None:intergenic |
| TGAGGACCACAACAGCAACA+AGG | 0.684477 | 4.3:-11098791 | None:intergenic |
| CAATAGGAATGTCTCTACCA+GGG | 0.688021 | 4.3:-11099058 | None:intergenic |
| ACAAAGTAGAAATCGACATG+AGG | 0.689359 | 4.3:-11099445 | None:intergenic |
| CAAGGGTTGTGATGGCTGTG+AGG | 0.703368 | 4.3:-11098809 | None:intergenic |
| TCAACAAGAGCAAACCAAGG+TGG | 0.728106 | 4.3:-11099329 | None:intergenic |
| ACAGAAGACAGATAACAAAG+CGG | 0.729498 | 4.3:-11097738 | None:intergenic |
| TAGTAAGCAATATATTACAG+TGG | 0.731132 | 4.3:-11099105 | None:intergenic |
| TCATCAACAAGAGCAAACCA+AGG | 0.735762 | 4.3:-11099332 | None:intergenic |
| TGAAGAGAAGAACAAGCACG+TGG | 0.736575 | 4.3:-11098884 | None:intergenic |
| GAGGCGTTACTATTCAAGTG+GGG | 0.751832 | 4.3:+11099502 | MS.gene030906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCGTAAAAAAAAAT+GGG | - | chr4.3:11098183-11098202 | None:intergenic | 10.0% |
| !! | GAAAAAATCATAAAAAATTT+CGG | - | chr4.3:11098252-11098271 | None:intergenic | 10.0% |
| !!! | AAATTTTACTATTTTTGTAA+GGG | - | chr4.3:11098526-11098545 | None:intergenic | 10.0% |
| !! | AAAAATCGTAAAAAAAAATG+GGG | - | chr4.3:11098182-11098201 | None:intergenic | 15.0% |
| !! | GAAAAAATCGTAAAAAAAAA+TGG | - | chr4.3:11098184-11098203 | None:intergenic | 15.0% |
| !! | TTAATAACAATAGATAAAGA+AGG | - | chr4.3:11099746-11099765 | None:intergenic | 15.0% |
| !!! | CAAATTTTACTATTTTTGTA+AGG | - | chr4.3:11098527-11098546 | None:intergenic | 15.0% |
| !!! | TTTTTTTTACGATTTTTTCT+CGG | + | chr4.3:11098185-11098204 | MS.gene030906:intron | 15.0% |
| !! | AAAACAAAAAAAAATAAGCC+AGG | - | chr4.3:11098127-11098146 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAAATAAGCCA+GGG | - | chr4.3:11098126-11098145 | None:intergenic | 20.0% |
| !! | AATGCTTTGATAAGATAAAA+AGG | + | chr4.3:11097865-11097884 | MS.gene030906:intron | 20.0% |
| !! | TCATGTTATGAACTATTATA+CGG | - | chr4.3:11098749-11098768 | None:intergenic | 20.0% |
| !! | TTGATAGAAAATCGTATATA+AGG | + | chr4.3:11099786-11099805 | MS.gene030906:CDS | 20.0% |
| !!! | AAAAAAAAAGGATTAGTGAT+TGG | - | chr4.3:11098001-11098020 | None:intergenic | 20.0% |
| !!! | TGGAAAAAAAAGTTTTTTGA+AGG | - | chr4.3:11098152-11098171 | None:intergenic | 20.0% |
| !!! | TTAACTGATTAAATTTTGCA+GGG | - | chr4.3:11098026-11098045 | None:intergenic | 20.0% |
| !!! | TTTAACTGATTAAATTTTGC+AGG | - | chr4.3:11098027-11098046 | None:intergenic | 20.0% |
| !!! | TTTTTATCTTATCAAAGCAT+TGG | - | chr4.3:11097866-11097885 | None:intergenic | 20.0% |
| ! | AAAAAAAATGGGGAAAAATC+TGG | - | chr4.3:11098172-11098191 | None:intergenic | 25.0% |
| ! | AAAATCGTATATAAGGTTTG+CGG | + | chr4.3:11099793-11099812 | MS.gene030906:CDS | 25.0% |
| ! | AACAAAAAAAAATAAGCCAG+GGG | - | chr4.3:11098125-11098144 | None:intergenic | 25.0% |
| ! | AATTGGAATTTCAGCTTATT+GGG | + | chr4.3:11099586-11099605 | MS.gene030906:CDS | 25.0% |
| ! | ACCTAATGAAATAATGTACT+TGG | - | chr4.3:11099222-11099241 | None:intergenic | 25.0% |
| ! | ACTATTATACGGAAATAGTT+AGG | - | chr4.3:11098738-11098757 | None:intergenic | 25.0% |
| ! | CTATTATACGGAAATAGTTA+GGG | - | chr4.3:11098737-11098756 | None:intergenic | 25.0% |
| ! | GTTATTAACTTATTCCTTCT+TGG | + | chr4.3:11099758-11099777 | MS.gene030906:CDS | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | + | chr4.3:11098323-11098342 | MS.gene030906:intron | 25.0% |
| ! | TAATTATAATTACCTGCAAC+AGG | - | chr4.3:11097788-11097807 | None:intergenic | 25.0% |
| ! | TAGTAAGCAATATATTACAG+TGG | - | chr4.3:11099108-11099127 | None:intergenic | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr4.3:11098423-11098442 | MS.gene030906:intron | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | + | chr4.3:11098322-11098341 | MS.gene030906:intron | 25.0% |
| ! | TTGATTATTGGATCTTCAAT+TGG | + | chr4.3:11099569-11099588 | MS.gene030906:CDS | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr4.3:11098422-11098441 | MS.gene030906:intron | 25.0% |
| ! | TTTGTTTATCTTTATGCTTG+TGG | + | chr4.3:11099463-11099482 | MS.gene030906:CDS | 25.0% |
| !! | TAACTGATTAAATTTTGCAG+GGG | - | chr4.3:11098025-11098044 | None:intergenic | 25.0% |
| !! | TTGTATACTATGTGCTATTA+GGG | + | chr4.3:11099834-11099853 | MS.gene030906:CDS | 25.0% |
| !! | TTGTTCCATTATGGTTTTTA+GGG | + | chr4.3:11099645-11099664 | MS.gene030906:CDS | 25.0% |
| !! | TTTGTTCCATTATGGTTTTT+AGG | + | chr4.3:11099644-11099663 | MS.gene030906:CDS | 25.0% |
| AAAAAAAGATTAGCGATTGC+AGG | + | chr4.3:11098451-11098470 | MS.gene030906:intron | 30.0% | |
| AAAAAAGATTAGCGATTGCA+GGG | + | chr4.3:11098452-11098471 | MS.gene030906:intron | 30.0% | |
| AACCGTGTACTATTACAAAA+AGG | + | chr4.3:11097922-11097941 | MS.gene030906:intron | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | + | chr4.3:11098324-11098343 | MS.gene030906:intron | 30.0% | |
| ACCGTGTACTATTACAAAAA+GGG | + | chr4.3:11097923-11097942 | MS.gene030906:intron | 30.0% | |
| ATTGAGATTGTAGCATTCAT+AGG | - | chr4.3:11099371-11099390 | None:intergenic | 30.0% | |
| CAATTGGAATTTCAGCTTAT+TGG | + | chr4.3:11099585-11099604 | MS.gene030906:CDS | 30.0% | |
| CGTTGCTTATAATATACTCA+AGG | - | chr4.3:11098662-11098681 | None:intergenic | 30.0% | |
| CTAATAGCACATAGTATACA+AGG | - | chr4.3:11099835-11099854 | None:intergenic | 30.0% | |
| GCCAAGTACATTATTTCATT+AGG | + | chr4.3:11099218-11099237 | MS.gene030906:CDS | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr4.3:11098424-11098443 | MS.gene030906:intron | 30.0% | |
| TGCTTATAATATACTCAAGG+AGG | - | chr4.3:11098659-11098678 | None:intergenic | 30.0% | |
| TTCTATCAATAGATCCAAGA+AGG | - | chr4.3:11099775-11099794 | None:intergenic | 30.0% | |
| TTTAAGAGTTGGGAAAACTA+CGG | + | chr4.3:11097467-11097486 | MS.gene030906:CDS | 30.0% | |
| ! | AAAAAAGGATTAGTGATTGG+AGG | - | chr4.3:11097998-11098017 | None:intergenic | 30.0% |
| ! | AAAAAGGATTAGTGATTGGA+GGG | - | chr4.3:11097997-11098016 | None:intergenic | 30.0% |
| ! | ACCCTTTTTGTAATAGTACA+CGG | - | chr4.3:11097927-11097946 | None:intergenic | 30.0% |
| ! | ACGCAATTTTTGTTCCATTA+TGG | + | chr4.3:11099636-11099655 | MS.gene030906:CDS | 30.0% |
| ! | ATTTCATTAGGTGCTTTGAA+AGG | + | chr4.3:11099230-11099249 | MS.gene030906:CDS | 30.0% |
| ! | CTTGTATACTATGTGCTATT+AGG | + | chr4.3:11099833-11099852 | MS.gene030906:CDS | 30.0% |
| ! | GTTCTTTTCTTTGCTTATGT+TGG | + | chr4.3:11098996-11099015 | MS.gene030906:CDS | 30.0% |
| !! | CAATGCTTTTTGTGTATGAT+TGG | + | chr4.3:11097829-11097848 | MS.gene030906:intron | 30.0% |
| AAACTACGGAAAATCTGTCA+TGG | + | chr4.3:11097481-11097500 | MS.gene030906:CDS | 35.0% | |
| AAAGGAACTCCCCATAATTT+AGG | - | chr4.3:11099710-11099729 | None:intergenic | 35.0% | |
| AATTTAGGCTTCTTTGCCAT+TGG | - | chr4.3:11099695-11099714 | None:intergenic | 35.0% | |
| ACAAAGTAGAAATCGACATG+AGG | - | chr4.3:11099448-11099467 | None:intergenic | 35.0% | |
| ACAGAAGACAGATAACAAAG+CGG | - | chr4.3:11097741-11097760 | None:intergenic | 35.0% | |
| ATAGATAAAGAAGGTAGCCA+AGG | - | chr4.3:11099737-11099756 | None:intergenic | 35.0% | |
| ATTGAGCCAATAAGACCAAT+AGG | - | chr4.3:11099077-11099096 | None:intergenic | 35.0% | |
| CAGTGATTAAATTGGGTCAA+AGG | - | chr4.3:11098057-11098076 | None:intergenic | 35.0% | |
| CATAACATGAACCCTGATTA+TGG | + | chr4.3:11098759-11098778 | MS.gene030906:CDS | 35.0% | |
| CGTAAACTGAGAATAGTTCT+CGG | - | chr4.3:11098940-11098959 | None:intergenic | 35.0% | |
| CTTCTCTTCATAGTAATTGC+TGG | + | chr4.3:11098897-11098916 | MS.gene030906:CDS | 35.0% | |
| CTTTGATGCAGTTTCAACAA+TGG | + | chr4.3:11099019-11099038 | MS.gene030906:CDS | 35.0% | |
| GATAAGAGTAAACATAGCAG+TGG | + | chr4.3:11099890-11099909 | MS.gene030906:CDS | 35.0% | |
| GCAAAGAAGCCTAAATTATG+GGG | + | chr4.3:11099698-11099717 | MS.gene030906:CDS | 35.0% | |
| GCATACTTAAAAGTTGAGCT+AGG | + | chr4.3:11098600-11098619 | MS.gene030906:CDS | 35.0% | |
| GGCAAAGAAGCCTAAATTAT+GGG | + | chr4.3:11099697-11099716 | MS.gene030906:CDS | 35.0% | |
| GTAAACTGAGAATAGTTCTC+GGG | - | chr4.3:11098939-11098958 | None:intergenic | 35.0% | |
| TAAATTATGGGGAGTTCCTT+TGG | + | chr4.3:11099709-11099728 | MS.gene030906:CDS | 35.0% | |
| TCAAAAAAACGACTTCTTCC+CGG | + | chr4.3:11097436-11097455 | MS.gene030906:CDS | 35.0% | |
| TGGCAAAGAAGCCTAAATTA+TGG | + | chr4.3:11099696-11099715 | MS.gene030906:CDS | 35.0% | |
| TTTAGTGCTGTAAATGGCAA+GGG | - | chr4.3:11098829-11098848 | None:intergenic | 35.0% | |
| ! | ATTCTCAGTTTACGCCTTTT+GGG | + | chr4.3:11098946-11098965 | MS.gene030906:CDS | 35.0% |
| ! | TATTCTCAGTTTACGCCTTT+TGG | + | chr4.3:11098945-11098964 | MS.gene030906:CDS | 35.0% |
| ! | TTTTGCAGGGGCAAAAAAAA+AGG | - | chr4.3:11098013-11098032 | None:intergenic | 35.0% |
| !! | GACATTCCTATTGGTCTTAT+TGG | + | chr4.3:11099068-11099087 | MS.gene030906:CDS | 35.0% |
| !! | GTGTGTCTTGTGTTGATTAT+TGG | + | chr4.3:11099557-11099576 | MS.gene030906:CDS | 35.0% |
| !! | TCTGGAATTTTTGTGCTTAC+CGG | + | chr4.3:11097653-11097672 | MS.gene030906:CDS | 35.0% |
| !! | TGCTTTGAAAGGAATGACAA+CGG | + | chr4.3:11099241-11099260 | MS.gene030906:CDS | 35.0% |
| !! | TTGTTGTCACTGTTTTGTTC+AGG | + | chr4.3:11098567-11098586 | MS.gene030906:intron | 35.0% |
| !!! | TCTTTGGCTTTTTGTTCCAA+TGG | + | chr4.3:11099676-11099695 | MS.gene030906:CDS | 35.0% |
| AAACGATCCTTCAACCGAAA+AGG | - | chr4.3:11097512-11097531 | None:intergenic | 40.0% | |
| ACCATACCATGAAACCCAAA+AGG | - | chr4.3:11098963-11098982 | None:intergenic | 40.0% | |
| ACGTCAGCAAATCACCAAAA+TGG | - | chr4.3:11098370-11098389 | None:intergenic | 40.0% | |
| ACGTCAGCAAATGACCAAAA+GGG | + | chr4.3:11098079-11098098 | MS.gene030906:intron | 40.0% | |
| AGACTTTGTGGCCTTTATAG+CGG | + | chr4.3:11098623-11098642 | MS.gene030906:CDS | 40.0% | |
| AGAGCCTTTAGTGCTGTAAA+TGG | - | chr4.3:11098835-11098854 | None:intergenic | 40.0% | |
| AGATAACAAAGCGGAGATAC+CGG | - | chr4.3:11097732-11097751 | None:intergenic | 40.0% | |
| AGATGAAGAAGACGCTGAAT+TGG | + | chr4.3:11097591-11097610 | MS.gene030906:CDS | 40.0% | |
| CAAGTGGGGTAACTACAAAA+GGG | + | chr4.3:11099516-11099535 | MS.gene030906:CDS | 40.0% | |
| CAATAGGAATGTCTCTACCA+GGG | - | chr4.3:11099061-11099080 | None:intergenic | 40.0% | |
| CAGTGATTAAACTGGGTCAA+AGG | + | chr4.3:11098392-11098411 | MS.gene030906:intron | 40.0% | |
| CCTGTCCCTAAAAACCATAA+TGG | - | chr4.3:11099653-11099672 | None:intergenic | 40.0% | |
| CGTATATAAGGTTTGCGGTT+TGG | + | chr4.3:11099798-11099817 | MS.gene030906:CDS | 40.0% | |
| CTTTAGTGCTGTAAATGGCA+AGG | - | chr4.3:11098830-11098849 | None:intergenic | 40.0% | |
| GACGTGGCAGTGATTAAATT+GGG | - | chr4.3:11098064-11098083 | None:intergenic | 40.0% | |
| GCACTAAAAGCAACAGAGAA+AGG | - | chr4.3:11099182-11099201 | None:intergenic | 40.0% | |
| TCAAGTGGGGTAACTACAAA+AGG | + | chr4.3:11099515-11099534 | MS.gene030906:CDS | 40.0% | |
| TCATCAACAAGAGCAAACCA+AGG | - | chr4.3:11099335-11099354 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAT+TGG | - | chr4.3:11098065-11098084 | None:intergenic | 40.0% | |
| TGAGAAGCAATGGAACAAGA+TGG | + | chr4.3:11099928-11099947 | MS.gene030906:CDS | 40.0% | |
| TTAAGCGAACCCTATTTGCA+GGG | + | chr4.3:11098483-11098502 | MS.gene030906:intron | 40.0% | |
| TTTAAGCGAACCCTATTTGC+AGG | + | chr4.3:11098482-11098501 | MS.gene030906:intron | 40.0% | |
| ! | CTGTCATGGAAACACCTTTT+CGG | + | chr4.3:11097495-11097514 | MS.gene030906:CDS | 40.0% |
| ! | CTTGCCATTTACAGCACTAA+AGG | + | chr4.3:11098828-11098847 | MS.gene030906:CDS | 40.0% |
| ! | GCTCTTGTTGATGAAAGAAC+AGG | + | chr4.3:11099341-11099360 | MS.gene030906:CDS | 40.0% |
| ! | TAGTGCTGTTGGAATGGATT+GGG | + | chr4.3:11099196-11099215 | MS.gene030906:CDS | 40.0% |
| ! | TGAGGCGTTACTATTCAAGT+GGG | + | chr4.3:11099501-11099520 | MS.gene030906:CDS | 40.0% |
| ! | TTAGTGCTGTTGGAATGGAT+TGG | + | chr4.3:11099195-11099214 | MS.gene030906:CDS | 40.0% |
| !! | AGGAATGACAACGGTTTTGT+TGG | + | chr4.3:11099250-11099269 | MS.gene030906:CDS | 40.0% |
| !! | CCATTATGGTTTTTAGGGAC+AGG | + | chr4.3:11099650-11099669 | MS.gene030906:CDS | 40.0% |
| !! | TGCTTTTAGTGCTGTTGGAA+TGG | + | chr4.3:11099190-11099209 | MS.gene030906:CDS | 40.0% |
| !! | TTGTCACTGTTTTGTTCAGG+TGG | + | chr4.3:11098570-11098589 | MS.gene030906:intron | 40.0% |
| !! | TTTGGCATTGGTTCAGTTGT+CGG | + | chr4.3:11097629-11097648 | MS.gene030906:CDS | 40.0% |
| !!! | ATGACAACGGTTTTGTTGGT+TGG | + | chr4.3:11099254-11099273 | MS.gene030906:CDS | 40.0% |
| !!! | ATTTTGGTGATTTGCTGACG+TGG | + | chr4.3:11098369-11098388 | MS.gene030906:intron | 40.0% |
| !!! | GTTTTGTTGGTTGGTTCTGT+GGG | + | chr4.3:11099263-11099282 | MS.gene030906:CDS | 40.0% |
| !!! | TCTGTTGCTTTTAGTGCTGT+TGG | + | chr4.3:11099185-11099204 | MS.gene030906:CDS | 40.0% |
| !!! | TTTACGCCTTTTGGGTTTCA+TGG | + | chr4.3:11098954-11098973 | MS.gene030906:CDS | 40.0% |
| AAAAAACGACTTCTTCCCGG+AGG | + | chr4.3:11097439-11097458 | MS.gene030906:CDS | 45.0% | |
| AACTCTTAAACGACTCCTCC+GGG | - | chr4.3:11097457-11097476 | None:intergenic | 45.0% | |
| AACTGTGAGCATGGATGGAT+TGG | + | chr4.3:11099611-11099630 | MS.gene030906:CDS | 45.0% | |
| ACAAAGGACAACACAACTGC+CGG | - | chr4.3:11097704-11097723 | None:intergenic | 45.0% | |
| AGGTCAAGATGGCCATAATC+AGG | - | chr4.3:11098774-11098793 | None:intergenic | 45.0% | |
| AGTTGAGCTAGGAGACTTTG+TGG | + | chr4.3:11098611-11098630 | MS.gene030906:CDS | 45.0% | |
| ATACTCAAGGAGGATGTTCC+CGG | - | chr4.3:11098649-11098668 | None:intergenic | 45.0% | |
| CAACAGCAACAAGGTCAAGA+TGG | - | chr4.3:11098785-11098804 | None:intergenic | 45.0% | |
| CAACTCTTAAACGACTCCTC+CGG | - | chr4.3:11097458-11097477 | None:intergenic | 45.0% | |
| CAATGGAACAAGATGGAGCA+AGG | + | chr4.3:11099935-11099954 | MS.gene030906:CDS | 45.0% | |
| CACGTCAGCAAATGACCAAA+AGG | + | chr4.3:11098078-11098097 | MS.gene030906:intron | 45.0% | |
| CCAATAGGAATGTCTCTACC+AGG | - | chr4.3:11099062-11099081 | None:intergenic | 45.0% | |
| CCTGGTAGAGACATTCCTAT+TGG | + | chr4.3:11099059-11099078 | MS.gene030906:CDS | 45.0% | |
| CTGAGAATAGTTCTCGGGTT+TGG | - | chr4.3:11098934-11098953 | None:intergenic | 45.0% | |
| GAAACGATCCACTGATCATG+CGG | + | chr4.3:11097535-11097554 | MS.gene030906:CDS | 45.0% | |
| GAAGAAGACGCTGAATTGGT+GGG | + | chr4.3:11097595-11097614 | MS.gene030906:CDS | 45.0% | |
| GACGTGGCAGTGATTAAACT+GGG | + | chr4.3:11098385-11098404 | MS.gene030906:intron | 45.0% | |
| GCAGAGGGTAGCAAAATAAG+AGG | - | chr4.3:11098706-11098725 | None:intergenic | 45.0% | |
| GGAGGAGTCGTTTAAGAGTT+GGG | + | chr4.3:11097457-11097476 | MS.gene030906:CDS | 45.0% | |
| GGTCAAGATGGCCATAATCA+GGG | - | chr4.3:11098773-11098792 | None:intergenic | 45.0% | |
| GTAAATGGCAAGGGTTGTGA+TGG | - | chr4.3:11098820-11098839 | None:intergenic | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | + | chr4.3:11097954-11097973 | MS.gene030906:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | - | chr4.3:11097973-11097954 | None:intergenic | 45.0% | |
| TATTGGGCTAACTGTGAGCA+TGG | + | chr4.3:11099602-11099621 | MS.gene030906:CDS | 45.0% | |
| TCAACAAGAGCAAACCAAGG+TGG | - | chr4.3:11099332-11099351 | None:intergenic | 45.0% | |
| TGAAGAAGACGCTGAATTGG+TGG | + | chr4.3:11097594-11097613 | MS.gene030906:CDS | 45.0% | |
| TGAAGAGAAGAACAAGCACG+TGG | - | chr4.3:11098887-11098906 | None:intergenic | 45.0% | |
| TGAATTGGTGGGACTTGATG+TGG | + | chr4.3:11097606-11097625 | MS.gene030906:CDS | 45.0% | |
| TGACGTGGCAGTGATTAAAC+TGG | + | chr4.3:11098384-11098403 | MS.gene030906:intron | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | + | chr4.3:11097955-11097974 | MS.gene030906:intron | 45.0% | |
| TGCAGTTTCAACAATGGCTG+AGG | + | chr4.3:11099025-11099044 | MS.gene030906:CDS | 45.0% | |
| TGGAGATTAAGGCTCGTAGT+GGG | + | chr4.3:11097564-11097583 | MS.gene030906:CDS | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | + | chr4.3:11097953-11097972 | MS.gene030906:intron | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | - | chr4.3:11097972-11097953 | None:intergenic | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | - | chr4.3:11097966-11097985 | None:intergenic | 45.0% | |
| TTCCATTGCTTCTCAACCTC+CGG | - | chr4.3:11099923-11099942 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | - | chr4.3:11097967-11097986 | None:intergenic | 45.0% | |
| ! | AGTTAGGGTTTTCGTTGCAG+AGG | - | chr4.3:11098722-11098741 | None:intergenic | 45.0% |
| ! | ATAAGGTTTGCGGTTTGGAC+AGG | + | chr4.3:11099803-11099822 | MS.gene030906:CDS | 45.0% |
| ! | GACTTGATGTGGTTTGGCAT+TGG | + | chr4.3:11097617-11097636 | MS.gene030906:CDS | 45.0% |
| ! | GAGGCGTTACTATTCAAGTG+GGG | + | chr4.3:11099502-11099521 | MS.gene030906:CDS | 45.0% |
| ! | GGAAACACCTTTTCGGTTGA+AGG | + | chr4.3:11097502-11097521 | MS.gene030906:CDS | 45.0% |
| ! | GTGAGGCGTTACTATTCAAG+TGG | + | chr4.3:11099500-11099519 | MS.gene030906:CDS | 45.0% |
| ! | GTTAGGGTTTTCGTTGCAGA+GGG | - | chr4.3:11098721-11098740 | None:intergenic | 45.0% |
| ! | TAAGGTTTGCGGTTTGGACA+GGG | + | chr4.3:11099804-11099823 | MS.gene030906:CDS | 45.0% |
| ! | TCTTGACCTTGTTGCTGTTG+TGG | + | chr4.3:11098785-11098804 | MS.gene030906:CDS | 45.0% |
| ! | TTTTGTGCTTACCGGACTTG+AGG | + | chr4.3:11097661-11097680 | MS.gene030906:CDS | 45.0% |
| !! | AGTTGATGGAGTACGGAAGA+GGG | + | chr4.3:11097403-11097422 | MS.gene030906:CDS | 45.0% |
| !! | CTGTTACACAGAGTTTGCTG+TGG | + | chr4.3:11097757-11097776 | MS.gene030906:CDS | 45.0% |
| !! | CTTTTGGTCATTTGCTGACG+TGG | - | chr4.3:11098080-11098099 | None:intergenic | 45.0% |
| !! | TGGCAACAGTTGATGGAGTA+CGG | + | chr4.3:11097396-11097415 | MS.gene030906:CDS | 45.0% |
| !! | TTGGCATTGGTTCAGTTGTC+GGG | + | chr4.3:11097630-11097649 | MS.gene030906:CDS | 45.0% |
| !! | TTTTAGGGACAGGTGCTCTT+TGG | + | chr4.3:11099660-11099679 | MS.gene030906:CDS | 45.0% |
| !!! | GCCTTTTGGGTTTCATGGTA+TGG | + | chr4.3:11098959-11098978 | MS.gene030906:CDS | 45.0% |
| !!! | GGTTTTGTTGGTTGGTTCTG+TGG | + | chr4.3:11099262-11099281 | MS.gene030906:CDS | 45.0% |
| !!! | AATTTTGAAATTTTTTTTTA+AGG | + | chr4.3:11098305-11098324 | MS.gene030906:intron | 5.0% |
| AGAGGTCCATGATCGTGCTA+CGG | - | chr4.3:11098688-11098707 | None:intergenic | 50.0% | |
| ATCCGGAGGTTGAGAAGCAA+TGG | + | chr4.3:11099918-11099937 | MS.gene030906:CDS | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | + | chr4.3:11098106-11098125 | MS.gene030906:intron | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | - | chr4.3:11098125-11098106 | None:intergenic | 50.0% | |
| CGAGGCGATGTAGTTGAAGA+CGG | - | chr4.3:11098859-11098878 | None:intergenic | 50.0% | |
| CGGAGGAGTCGTTTAAGAGT+TGG | + | chr4.3:11097456-11097475 | MS.gene030906:CDS | 50.0% | |
| GAAGGTAGCCAAGGAACCAA+AGG | - | chr4.3:11099728-11099747 | None:intergenic | 50.0% | |
| GCTGAGGAAACTAAGAACCC+TGG | + | chr4.3:11099041-11099060 | MS.gene030906:CDS | 50.0% | |
| GCTGTGGAAATACCTGTTGC+AGG | + | chr4.3:11097773-11097792 | MS.gene030906:CDS | 50.0% | |
| GTACTCACATGATGCCACCT+TGG | + | chr4.3:11099315-11099334 | MS.gene030906:CDS | 50.0% | |
| GTGGAGATTAAGGCTCGTAG+TGG | + | chr4.3:11097563-11097582 | MS.gene030906:CDS | 50.0% | |
| GTGTTGTCCTTTGTCGTCTC+CGG | + | chr4.3:11097710-11097729 | MS.gene030906:CDS | 50.0% | |
| TCACCAAAATGGCACGCGAA+AGG | - | chr4.3:11098359-11098378 | None:intergenic | 50.0% | |
| TGAGGACCACAACAGCAACA+AGG | - | chr4.3:11098794-11098813 | None:intergenic | 50.0% | |
| TGGTGGGACTTGATGTGGTT+TGG | + | chr4.3:11097611-11097630 | MS.gene030906:CDS | 50.0% | |
| TTTGTGGCCTTTATAGCGGC+CGG | + | chr4.3:11098627-11098646 | MS.gene030906:CDS | 50.0% | |
| ! | ATTGGTTCAGTTGTCGGGTC+TGG | + | chr4.3:11097635-11097654 | MS.gene030906:CDS | 50.0% |
| ! | GTTGATGGAGTACGGAAGAG+GGG | + | chr4.3:11097404-11097423 | MS.gene030906:CDS | 50.0% |
| !! | ACATAGCAGTGGCTCTGATC+CGG | + | chr4.3:11099901-11099920 | MS.gene030906:CDS | 50.0% |
| !! | ACGCCTCACCAAAAGTGCTA+AGG | - | chr4.3:11099489-11099508 | None:intergenic | 50.0% |
| !! | CAGTTGATGGAGTACGGAAG+AGG | + | chr4.3:11097402-11097421 | MS.gene030906:CDS | 50.0% |
| !! | GCTTGTGGCCTTAGCACTTT+TGG | + | chr4.3:11099478-11099497 | MS.gene030906:CDS | 50.0% |
| !! | TGGCCTTAGCACTTTTGGTG+AGG | + | chr4.3:11099483-11099502 | MS.gene030906:CDS | 50.0% |
| AACAAGCACGTGGAAGAGCG+AGG | - | chr4.3:11098877-11098896 | None:intergenic | 55.0% | |
| ATCCACTGATCATGCGGAGC+TGG | + | chr4.3:11097541-11097560 | MS.gene030906:CDS | 55.0% | |
| CAAGGGTTGTGATGGCTGTG+AGG | - | chr4.3:11098812-11098831 | None:intergenic | 55.0% | |
| GATGTTCCCGGCCGCTATAA+AGG | - | chr4.3:11098637-11098656 | None:intergenic | 55.0% | |
| GCTTACCGGACTTGAGGCTA+GGG | + | chr4.3:11097667-11097686 | MS.gene030906:CDS | 55.0% | |
| GGAGATACCGGAGACGACAA+AGG | - | chr4.3:11097720-11097739 | None:intergenic | 55.0% | |
| GGGCTAACTGTGAGCATGGA+TGG | + | chr4.3:11099606-11099625 | MS.gene030906:CDS | 55.0% | |
| TGCGGAGCTGGTGGAGATTA+AGG | + | chr4.3:11097553-11097572 | MS.gene030906:CDS | 55.0% | |
| TGCTTACCGGACTTGAGGCT+AGG | + | chr4.3:11097666-11097685 | MS.gene030906:CDS | 55.0% | |
| TTGCTCCCTAGCCTCAAGTC+CGG | - | chr4.3:11097675-11097694 | None:intergenic | 55.0% | |
| TTGTGGCCTTTATAGCGGCC+GGG | + | chr4.3:11098628-11098647 | MS.gene030906:CDS | 55.0% | |
| ! | GGGGAGTTCCTTTGGTTCCT+TGG | + | chr4.3:11099717-11099736 | MS.gene030906:CDS | 55.0% |
| ! | TGACCAAAAGGGCACGCGAA+AGG | + | chr4.3:11098090-11098109 | MS.gene030906:intron | 55.0% |
| !!! | CGTCCTTTCGCGTGCCATTT+TGG | + | chr4.3:11098353-11098372 | MS.gene030906:intron | 55.0% |
| CACCAGCTCCGCATGATCAG+TGG | - | chr4.3:11097546-11097565 | None:intergenic | 60.0% | |
| CACTGATCATGCGGAGCTGG+TGG | + | chr4.3:11097544-11097563 | MS.gene030906:CDS | 60.0% | |
| CTTGAGGCTAGGGAGCAAGC+AGG | + | chr4.3:11097677-11097696 | MS.gene030906:CDS | 60.0% | |
| GGTCCATGATCGTGCTACGG+CGG | - | chr4.3:11098685-11098704 | None:intergenic | 60.0% | |
| ! | CGTCCTTTCGCGTGCCCTTT+TGG | - | chr4.3:11098096-11098115 | None:intergenic | 60.0% |
| !! | TAGCAGTGGCTCTGATCCGG+AGG | + | chr4.3:11099904-11099923 | MS.gene030906:CDS | 60.0% |
| ACGCCGCCGTAGCACGATCA+TGG | + | chr4.3:11098679-11098698 | MS.gene030906:CDS | 65.0% | |
| GGCTAGGGAGCAAGCAGGTC+CGG | + | chr4.3:11097682-11097701 | MS.gene030906:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 11097395 | 11100000 | 11097395 | ID=MS.gene030906 |
| chr4.3 | mRNA | 11097395 | 11100000 | 11097395 | ID=MS.gene030906.t1;Parent=MS.gene030906 |
| chr4.3 | exon | 11097395 | 11097794 | 11097395 | ID=MS.gene030906.t1.exon1;Parent=MS.gene030906.t1 |
| chr4.3 | CDS | 11097395 | 11097794 | 11097395 | ID=cds.MS.gene030906.t1;Parent=MS.gene030906.t1 |
| chr4.3 | exon | 11098589 | 11100000 | 11098589 | ID=MS.gene030906.t1.exon2;Parent=MS.gene030906.t1 |
| chr4.3 | CDS | 11098589 | 11100000 | 11098589 | ID=cds.MS.gene030906.t1;Parent=MS.gene030906.t1 |
| Gene Sequence |
| Protein sequence |
