AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030907

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030907.t1 MTR_8g089320 96.523 604 21 0 1 604 1 604 0.0 1190
MS.gene030907.t1 MTR_8g089360 74.913 574 140 3 21 594 26 595 0.0 876
MS.gene030907.t1 MTR_8g089360 74.913 574 140 3 21 594 9 578 0.0 875
MS.gene030907.t1 MTR_8g089340 91.904 457 36 1 149 604 1 457 0.0 813
MS.gene030907.t1 MTR_1g030660 63.276 580 206 2 28 601 23 601 0.0 762
MS.gene030907.t1 MTR_2g035430 56.729 587 254 0 1 587 1 587 0.0 711
MS.gene030907.t1 MTR_8g461380 50.176 568 277 2 19 586 26 587 0.0 578
MS.gene030907.t1 MTR_1g111740 41.156 588 323 4 28 603 6 582 6.23e-153 452
MS.gene030907.t1 MTR_4g099270 39.854 547 311 6 51 587 1 539 3.18e-127 385
MS.gene030907.t1 MTR_4g099270 44.652 374 203 2 35 404 6 379 6.92e-106 325
MS.gene030907.t1 MTR_4g099270 37.701 435 253 6 163 587 1 427 7.24e-90 285
MS.gene030907.t1 MTR_4g099270 44.040 302 165 2 35 332 6 307 9.46e-83 262
MS.gene030907.t1 MTR_8g089342 91.367 139 11 1 1 138 1 139 2.95e-80 249
MS.gene030907.t1 MTR_7g086510 37.084 391 239 3 63 446 29 419 1.03e-75 253
MS.gene030907.t1 MTR_6g027630 35.000 420 263 5 35 446 7 424 1.38e-75 252
MS.gene030907.t1 MTR_6g027630 35.000 420 263 5 35 446 7 424 2.35e-75 252
MS.gene030907.t1 MTR_6g027680 35.385 390 243 3 65 446 39 427 3.92e-72 242
MS.gene030907.t1 MTR_6g027650 33.886 422 258 6 35 446 7 417 9.57e-72 243
MS.gene030907.t1 MTR_6g027660 32.401 429 277 4 25 446 3 425 4.34e-71 241
MS.gene030907.t1 MTR_6g034535 43.657 268 136 5 328 586 49 310 9.89e-71 231
MS.gene030907.t1 MTR_6g034535 43.750 96 29 1 98 193 19 89 4.34e-15 77.0
MS.gene030907.t1 MTR_7g086610 36.031 383 236 3 72 446 32 413 1.62e-69 236
MS.gene030907.t1 MTR_7g007850 30.769 520 340 9 65 571 42 554 5.21e-67 228
MS.gene030907.t1 MTR_7g007850 28.909 550 341 9 65 571 42 584 1.17e-62 218
MS.gene030907.t1 MTR_7g007850 32.524 412 267 7 65 467 42 451 1.87e-59 206
MS.gene030907.t1 MTR_7g007850 32.524 412 267 7 65 467 42 451 3.00e-59 207
MS.gene030907.t1 MTR_6g027630 34.118 340 215 4 115 446 1 339 6.39e-56 198
MS.gene030907.t1 MTR_6g027670 32.278 158 107 0 289 446 1 158 7.49e-26 108
MS.gene030907.t1 MTR_2g064760 89.655 29 3 0 489 517 13 41 6.22e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030907.t1 AT4G21120 67.172 594 185 1 11 604 9 592 0.0 839
MS.gene030907.t1 AT2G34960 57.829 562 235 2 11 571 3 563 0.0 681
MS.gene030907.t1 AT4G21120 64.159 452 152 1 153 604 1 442 0.0 607
MS.gene030907.t1 AT1G17120 53.667 559 258 1 13 571 22 579 0.0 598
MS.gene030907.t1 AT3G10600 40.444 586 315 8 27 592 11 582 7.88e-146 434
MS.gene030907.t1 AT5G04770 40.206 582 316 7 30 592 15 583 1.03e-144 431
MS.gene030907.t1 AT5G04770 41.927 384 213 2 30 403 15 398 4.08e-107 329
MS.gene030907.t1 AT3G10600 38.444 450 243 8 163 592 1 436 2.96e-101 315
MS.gene030907.t1 AT5G04770 38.307 449 245 7 163 592 1 436 9.68e-94 295
MS.gene030907.t1 AT5G36940 35.417 384 241 3 70 446 27 410 4.06e-74 249
MS.gene030907.t1 AT3G03720 34.913 401 252 3 53 446 7 405 1.67e-73 247
MS.gene030907.t1 AT1G58030 33.766 385 248 3 69 446 37 421 4.57e-69 236
MS.gene030907.t1 AT1G05940 29.511 532 352 7 64 578 40 565 2.69e-66 227
MS.gene030907.t1 AT1G05940 30.242 496 323 7 64 542 40 529 2.46e-63 218
MS.gene030907.t1 AT1G05940 31.382 427 280 5 64 478 40 465 4.32e-61 211
MS.gene030907.t1 AT1G05940 27.703 444 300 5 151 578 9 447 2.06e-43 162

Find 159 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGGAATTTCAGCTTAT+TGG 0.122057 4.3:+11105447 MS.gene030907:CDS
TCCACGACTTCACTCCTTTC+GGG 0.194112 4.3:+11104808 MS.gene030907:CDS
CTTGTATACTATGTGCTATT+GGG 0.197270 4.3:+11105695 MS.gene030907:CDS
GTGTGTCTTGTGTTGATTAT+TGG 0.202436 4.3:+11105419 MS.gene030907:CDS
CCTTGTATACTATGTGCTAT+TGG 0.216779 4.3:+11105694 MS.gene030907:CDS
GCTATTAACATATTCCTTCT+TGG 0.218446 4.3:+11105620 MS.gene030907:CDS
TTTGTTCCTCTGTGGTTTAT+AGG 0.224891 4.3:+11105506 MS.gene030907:CDS
AATTGGAATTTCAGCTTATT+GGG 0.231227 4.3:+11105448 MS.gene030907:CDS
TTGTTCCTCTGTGGTTTATA+GGG 0.252540 4.3:+11105507 MS.gene030907:CDS
GTTGCTTTCTTTACCGATCT+TGG 0.269135 4.3:+11105272 MS.gene030907:CDS
CTGTCATGGAAACACCTTTC+CGG 0.269768 4.3:+11102279 MS.gene030907:CDS
TTCGGTATCGGCGCCGTTAT+TGG 0.276213 4.3:+11102413 MS.gene030907:CDS
TTATAGGGACTGGTGCTCTT+TGG 0.283313 4.3:+11105522 MS.gene030907:CDS
TGCTTACTTAAGAGTAGAAT+TGG 0.292424 4.3:+11104461 MS.gene030907:CDS
ATCGGCGCCGTTATTGGTTC+TGG 0.295459 4.3:+11102419 MS.gene030907:CDS
TGCAGAGCTGGTGGAGATTA+AGG 0.299520 4.3:+11102337 MS.gene030907:CDS
CAAGGGCTGTGATGGCTACT+AGG 0.303231 4.3:-11104671 None:intergenic
GGGGAGTACCTTTGGTTCCT+TGG 0.311642 4.3:+11105579 MS.gene030907:CDS
TTCCACGACTTCACTCCTTT+CGG 0.314152 4.3:+11104807 MS.gene030907:CDS
ATACTCAAGGAGGATGTTTC+CGG 0.316964 4.3:-11104508 None:intergenic
GGGCATATCTGCTTTGTTAT+CGG 0.324019 4.3:+11102514 MS.gene030907:CDS
TGTATTGTCGTTTGTCATCT+CGG 0.339399 4.3:+11102493 MS.gene030907:CDS
GACATTCCAATTGGTCTAGT+TGG 0.355410 4.3:+11104930 MS.gene030907:CDS
TCAAAAGAACGACTTCTTCC+CGG 0.355424 4.3:+11102220 MS.gene030907:CDS
CACAATATGAACCCTGACTA+TGG 0.355787 4.3:+11104621 MS.gene030907:CDS
CGTATATAAGGTTTGCGGTT+TGG 0.357696 4.3:+11105660 MS.gene030907:CDS
GCTGTGGAAATTCCGGTTGC+AGG 0.357996 4.3:+11102557 MS.gene030907:CDS
TCTGGAATATTTGTGCTTAC+CGG 0.360075 4.3:+11102437 MS.gene030907:CDS
GCAATTGAACAAGGTGGAAC+AGG 0.361594 4.3:+11105796 MS.gene030907:CDS
TTGATTATTGGTTCTTCAAT+TGG 0.371036 4.3:+11105431 MS.gene030907:CDS
ACTAGGGCTGCAATAGCAAT+AGG 0.377127 4.3:-11104654 None:intergenic
TTGCTTTCTTTACCGATCTT+GGG 0.377778 4.3:+11105273 MS.gene030907:CDS
TTCACTCCTTTCGGGCTTCA+CGG 0.378499 4.3:+11104816 MS.gene030907:CDS
TAAGTTATGGGGAGTACCTT+TGG 0.384691 4.3:+11105571 MS.gene030907:CDS
TTAGTGCTGTTGGGATGGAT+TGG 0.393093 4.3:+11105057 MS.gene030907:CDS
ATTGAGATTGTAGCATTCAT+AGG 0.394274 4.3:-11105230 None:intergenic
GGGTCAAGATGGCCATAGTC+AGG 0.395099 4.3:-11104633 None:intergenic
GGAGGAGTCGTTTAAGAGTT+GGG 0.398486 4.3:+11102241 MS.gene030907:CDS
GGCAAAGAAGCCTAAGTTAT+GGG 0.403530 4.3:+11105559 MS.gene030907:CDS
TAGTGCTGTTGGGATGGATT+GGG 0.404247 4.3:+11105058 MS.gene030907:CDS
TCAAGTGAGGTAACTACAAA+AGG 0.408616 4.3:+11105377 MS.gene030907:CDS
AACTTAGGCTTCTTTGCCAT+TGG 0.410038 4.3:-11105554 None:intergenic
AGAGTTTGCTGTGGAAATTC+CGG 0.413761 4.3:+11102550 MS.gene030907:CDS
TCCTTTCGGGCTTCACGGTA+TGG 0.424775 4.3:+11104821 MS.gene030907:CDS
TGGCATTGGCACTTCTAGTA+AGG 0.430198 4.3:+11105345 MS.gene030907:CDS
GGCTAGGCAGGAAGCAGGTC+CGG 0.432589 4.3:+11102466 MS.gene030907:CDS
GATGTTTCCGGCAGCTATAA+AGG 0.433876 4.3:-11104496 None:intergenic
ACTATTATACGAAAATCATC+AGG 0.434415 4.3:-11104597 None:intergenic
GCTCTTGTTGATGAAAGAAC+AGG 0.435974 4.3:+11105203 MS.gene030907:CDS
ATAAGGTTTGCGGTTTGGAC+AGG 0.438702 4.3:+11105665 MS.gene030907:CDS
ATTGAACCAACTAGACCAAT+TGG 0.438801 4.3:-11104936 None:intergenic
ACATACTAGTGGTTCTGATC+AGG 0.442761 4.3:+11105763 MS.gene030907:CDS
GGAAACACCTTTCCGGTTGA+AGG 0.447666 4.3:+11102286 MS.gene030907:CDS
GCAACAAACGATCCTTCAAC+CGG 0.447719 4.3:-11102298 None:intergenic
GTATTGTCGTTTGTCATCTC+GGG 0.449106 4.3:+11102494 MS.gene030907:CDS
GCACTAAAAGCAACAGAGAA+AGG 0.459176 4.3:-11105041 None:intergenic
CGGAGGAGTCGTTTAAGAGT+TGG 0.471701 4.3:+11102240 MS.gene030907:CDS
TACCGGACTTGAGGCTAGGC+AGG 0.477948 4.3:+11102454 MS.gene030907:CDS
CCTCTGTGGTTTATAGGGAC+TGG 0.479549 4.3:+11105512 MS.gene030907:CDS
TGTGGCTATGTAGTTGAAGA+TGG 0.479563 4.3:-11104718 None:intergenic
AACAGTGAGAATGGATGGAT+TGG 0.479583 4.3:+11105473 MS.gene030907:CDS
GTTGAAGATGGAAGAGCCTT+TGG 0.481809 4.3:-11104706 None:intergenic
GCTTACTTAAGAGTAGAATT+GGG 0.482784 4.3:+11104462 MS.gene030907:CDS
CAACTCTTAAACGACTCCTC+CGG 0.483055 4.3:-11102239 None:intergenic
GTTCTTAGTTTCTTCAGCCA+TGG 0.485412 4.3:-11104898 None:intergenic
AACTCTTAAACGACTCCTCC+GGG 0.489247 4.3:-11102238 None:intergenic
TGGCAAAGAAGCCTAAGTTA+TGG 0.489518 4.3:+11105558 MS.gene030907:CDS
GACTTGATGTGGTTCGGTAT+CGG 0.490414 4.3:+11102401 MS.gene030907:CDS
ACGCCGCGGTAGCTCGATCA+TGG 0.494424 4.3:+11104541 MS.gene030907:CDS
GGGCTTGGCTTTGATTAGAC+CGG 0.496348 4.3:-11104778 None:intergenic
AAAATCGTATATAAGGTTTG+CGG 0.499007 4.3:+11105655 MS.gene030907:CDS
GACACACAATGAGATTTACT+TGG 0.500876 4.3:-11105403 None:intergenic
TATTGGGCTAACAGTGAGAA+TGG 0.501880 4.3:+11105464 MS.gene030907:CDS
ATCCTCCTTGAGTATATCAT+AGG 0.504563 4.3:+11104516 MS.gene030907:CDS
ATCTAGTGATCATGCAGAGC+TGG 0.509916 4.3:+11102325 MS.gene030907:CDS
CCAATTGGAATGTCTCTACC+AGG 0.509969 4.3:-11104921 None:intergenic
CCTGGTAGAGACATTCCAAT+TGG 0.511803 4.3:+11104921 MS.gene030907:CDS
GGAGAGGTGGTCGATGGCGG+CGG 0.515481 4.3:+11102173 MS.gene030907:CDS
AAGGGCTGTGATGGCTACTA+GGG 0.519818 4.3:-11104670 None:intergenic
TTTGTTGCCTTTATAGCTGC+CGG 0.521495 4.3:+11104489 MS.gene030907:CDS
TGGTGGGACTTGATGTGGTT+CGG 0.522493 4.3:+11102395 MS.gene030907:CDS
AAATATTCCAGAACCAATAA+CGG 0.523587 4.3:-11102426 None:intergenic
CAAGTGAGGTAACTACAAAA+GGG 0.524334 4.3:+11105378 MS.gene030907:CDS
TTAATAGCAATAGATAAAGA+AGG 0.526151 4.3:-11105605 None:intergenic
TTTAAGAGTTGGGGAAACTA+CGG 0.530921 4.3:+11102251 MS.gene030907:CDS
CCAATAGCACATAGTATACA+AGG 0.532930 4.3:-11105694 None:intergenic
AGATGAAGAAGACGTTGAAC+TGG 0.533887 4.3:+11102375 MS.gene030907:CDS
CTTGCAGTTTACAGCACCAA+AGG 0.534562 4.3:+11104690 MS.gene030907:CDS
CTAGGGCTGCAATAGCAATA+GGG 0.541934 4.3:-11104653 None:intergenic
TTGTATACTATGTGCTATTG+GGG 0.543861 4.3:+11105696 MS.gene030907:CDS
CTTTGATGCAGTTTCAACCA+TGG 0.552516 4.3:+11104881 MS.gene030907:CDS
CTTGAGGCTAGGCAGGAAGC+AGG 0.555643 4.3:+11102461 MS.gene030907:CDS
TGCTTACCGGACTTGAGGCT+AGG 0.556310 4.3:+11102450 MS.gene030907:CDS
GGGCTAACAGTGAGAATGGA+TGG 0.558502 4.3:+11105468 MS.gene030907:CDS
ATAGATAAAGAAGGTAGCCA+AGG 0.559440 4.3:-11105596 None:intergenic
TAAGGTTTGCGGTTTGGACA+GGG 0.562484 4.3:+11105666 MS.gene030907:CDS
GTAAACTGCAAGGGCTGTGA+TGG 0.563586 4.3:-11104679 None:intergenic
CATAGTCAGGGTTCATATTG+TGG 0.563878 4.3:-11104620 None:intergenic
GTTGGAGAGGTGGTCGATGG+CGG 0.564645 4.3:+11102170 MS.gene030907:CDS
GAAAACAGGAACATGGCAGT+TGG 0.566836 4.3:+11102152 None:intergenic
CTTTGGTGCTGTAAACTGCA+AGG 0.567605 4.3:-11104689 None:intergenic
GCAGTTGGAGAGGTGGTCGA+TGG 0.568853 4.3:+11102167 MS.gene030907:CDS
TAGTGATCATGCAGAGCTGG+TGG 0.569903 4.3:+11102328 MS.gene030907:CDS
GTTTCACTAGGTGCTTTGAA+AGG 0.570706 4.3:+11105092 MS.gene030907:CDS
ACACCATCTTTGTTCCTCTG+TGG 0.571390 4.3:+11105498 MS.gene030907:CDS
ATTTGTGCTTACCGGACTTG+AGG 0.572133 4.3:+11102445 MS.gene030907:CDS
CAATAGCAATAGGGTCAAGA+TGG 0.574940 4.3:-11104644 None:intergenic
TGAAGAAGACGTTGAACTGG+TGG 0.575728 4.3:+11102378 MS.gene030907:CDS
CAGGAACATGGCAGTTGGAG+AGG 0.576698 4.3:+11102157 None:intergenic
AACATAAGCAAAGAAAAGTA+CGG 0.578928 4.3:-11104856 None:intergenic
GCTAAGTACATTGTTTCACT+AGG 0.579305 4.3:+11105080 MS.gene030907:CDS
GATCAGATTAAACATACTAG+TGG 0.585592 4.3:+11105752 MS.gene030907:CDS
AAGGAGATATTATTCAAGTG+AGG 0.585702 4.3:+11105364 MS.gene030907:CDS
TGAACTGGTGGGACTTGATG+TGG 0.588455 4.3:+11102390 MS.gene030907:CDS
TTCCTGCCTAGCCTCAAGTC+CGG 0.590625 4.3:-11102456 None:intergenic
ACCATACCGTGAAGCCCGAA+AGG 0.592168 4.3:-11104822 None:intergenic
AAACTACGGAAAATCTGTCA+TGG 0.596565 4.3:+11102265 MS.gene030907:CDS
GCCCGAAAGGAGTGAAGTCG+TGG 0.598740 4.3:-11104809 None:intergenic
GAAGGTAGCCAAGGAACCAA+AGG 0.599611 4.3:-11105587 None:intergenic
GTACTCACATGATGCCACCT+TGG 0.601374 4.3:+11105177 MS.gene030907:CDS
ATTATCTTCATAGTAATCGC+CGG 0.602298 4.3:+11104759 MS.gene030907:CDS
GAGGAGTCGTTTAAGAGTTG+GGG 0.604687 4.3:+11102242 MS.gene030907:CDS
TACTAGTGGTTCTGATCAGG+AGG 0.607435 4.3:+11105766 MS.gene030907:CDS
GAACATGGCAGTTGGAGAGG+TGG 0.607953 4.3:+11102160 None:intergenic
GGTTGAGAAGCAATTGAACA+AGG 0.608119 4.3:+11105787 MS.gene030907:CDS
ACAAAGTAGCAATCGACAAG+AGG 0.610155 4.3:-11105307 None:intergenic
AAACGATCCTTCAACCGGAA+AGG 0.612552 4.3:-11102293 None:intergenic
AAACCACAGAGGAACAAAGA+TGG 0.613035 4.3:-11105501 None:intergenic
GTGGAGATTAAGGCTAGGAG+TGG 0.614966 4.3:+11102347 MS.gene030907:CDS
TTTGGTGCTGTAAACTGCAA+GGG 0.618827 4.3:-11104688 None:intergenic
GGTCAAGATGGCCATAGTCA+GGG 0.621031 4.3:-11104632 None:intergenic
TTGTTATACAGAGTTTGCTG+TGG 0.625474 4.3:+11102541 MS.gene030907:CDS
AGCTGGTGGAGATTAAGGCT+AGG 0.626254 4.3:+11102342 MS.gene030907:CDS
GGCGGCGGAGTACGTAGGAG+AGG 0.626720 4.3:+11102188 MS.gene030907:CDS
CAATTGAACAAGGTGGAACA+GGG 0.630668 4.3:+11105797 MS.gene030907:CDS
CGTTGCCTATGATATACTCA+AGG 0.633243 4.3:-11104521 None:intergenic
GTTCGATAGAATCCCAAGAT+CGG 0.634285 4.3:-11105285 None:intergenic
ACAAACGACAATACAACCGC+CGG 0.635158 4.3:-11102485 None:intergenic
CATAGCCACACTCTTACACA+TGG 0.637053 4.3:+11104731 MS.gene030907:CDS
TAGGCAGGAAGCAGGTCCGG+CGG 0.638522 4.3:+11102469 MS.gene030907:CDS
TGCTTTGAAAGGAATGACAA+CGG 0.638848 4.3:+11105103 MS.gene030907:CDS
GCAAAGAAGCCTAAGTTATG+GGG 0.643860 4.3:+11105560 MS.gene030907:CDS
AAAGGTACTCCCCATAACTT+AGG 0.644859 4.3:-11105569 None:intergenic
CTATTATACGAAAATCATCA+GGG 0.647038 4.3:-11104596 None:intergenic
TGGAGATTAAGGCTAGGAGT+GGG 0.659365 4.3:+11102348 MS.gene030907:CDS
GAAGAAGACGTTGAACTGGT+GGG 0.664861 4.3:+11102379 MS.gene030907:CDS
GCTGAAGAAACTAAGAACCC+TGG 0.666018 4.3:+11104903 MS.gene030907:CDS
GGTCCATGATCGAGCTACCG+CGG 0.681679 4.3:-11104544 None:intergenic
TGAGAAGCAATTGAACAAGG+TGG 0.692961 4.3:+11105790 MS.gene030907:CDS
CAATTGGAATGTCTCTACCA+GGG 0.700717 4.3:-11104920 None:intergenic
GCAGAGGGTGGCGAAATACG+AGG 0.702759 4.3:-11104565 None:intergenic
TCGATGGCGGCGGAGTACGT+AGG 0.703593 4.3:+11102183 MS.gene030907:CDS
TGCCTATGATATACTCAAGG+AGG 0.704194 4.3:-11104518 None:intergenic
GACAGCCATGTGTAAGAGTG+TGG 0.708211 4.3:-11104736 None:intergenic
TCAACAAGAGCAAACCAAGG+TGG 0.728106 4.3:-11105191 None:intergenic
AAAGAACGACTTCTTCCCGG+AGG 0.732358 4.3:+11102223 MS.gene030907:CDS
TCATCAACAAGAGCAAACCA+AGG 0.735762 4.3:-11105194 None:intergenic
GTATATCATAGGCAACGCCG+CGG 0.783643 4.3:+11104527 MS.gene030907:CDS
CCAGTCCCTATAAACCACAG+AGG 0.796817 4.3:-11105512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATAAATATAAATTAA+AGG - chr4.3:11103724-11103743 None:intergenic 0.0%
!! AAAAATGAATTATATTAACA+CGG + chr4.3:11104296-11104315 MS.gene030907:intron 10.0%
!! ATATAAAGATTATCAATAAA+AGG - chr4.3:11103939-11103958 None:intergenic 10.0%
!!! ATTTGCATTAAATTTAATTT+AGG + chr4.3:11102629-11102648 MS.gene030907:intron 10.0%
!!! CAAGTTTTTTTTTTTAATAT+TGG + chr4.3:11104393-11104412 MS.gene030907:intron 10.0%
!!! TTATATTTTGAAGAAAAATA+AGG + chr4.3:11103442-11103461 MS.gene030907:intron 10.0%
!!! TTTGCATTAAATTTAATTTA+GGG + chr4.3:11102630-11102649 MS.gene030907:intron 10.0%
!! AAAAAAATTGTATTGAATGA+TGG - chr4.3:11103400-11103419 None:intergenic 15.0%
!! ATATTGTGGAATTATAAATT+TGG - chr4.3:11103036-11103055 None:intergenic 15.0%
!! ATTAAGACAATAAAATGTTA+AGG + chr4.3:11104091-11104110 MS.gene030907:intron 15.0%
!! TATTGTGGAATTATAAATTT+GGG - chr4.3:11103035-11103054 None:intergenic 15.0%
!! TGAAATTATTAAGAATTTGT+TGG - chr4.3:11103351-11103370 None:intergenic 15.0%
!! TTGATAAAAAATCGTATATA+AGG + chr4.3:11105648-11105667 MS.gene030907:CDS 15.0%
!! TTTAAGTCTATAAAAAAATG+TGG + chr4.3:11103194-11103213 MS.gene030907:intron 15.0%
!!! AACAATATTGACAATATTTT+AGG + chr4.3:11102830-11102849 MS.gene030907:intron 15.0%
!!! ATAATTTTTTGTTTACCTTT+AGG - chr4.3:11102712-11102731 None:intergenic 15.0%
!!! TATATTCTTTTTGTGATTTA+GGG + chr4.3:11104229-11104248 MS.gene030907:intron 15.0%
!! AAAAGTTGAATTCTCAATTA+TGG - chr4.3:11102807-11102826 None:intergenic 20.0%
!! AAAGATTATCAATAAAAGGT+TGG - chr4.3:11103935-11103954 None:intergenic 20.0%
!! AAAGTTGAATTCTCAATTAT+GGG - chr4.3:11102806-11102825 None:intergenic 20.0%
!! AAATTAATTAATATGCATCG+AGG - chr4.3:11103156-11103175 None:intergenic 20.0%
!! ACAACAAAGAAATAATAGAT+AGG + chr4.3:11102970-11102989 MS.gene030907:intron 20.0%
!! ATACACTATTTATTCCAATA+TGG - chr4.3:11103700-11103719 None:intergenic 20.0%
!! ATCTTATGGTAGTAAAATAT+CGG - chr4.3:11103596-11103615 None:intergenic 20.0%
!! TAATTCCACAATATTAAAAG+TGG + chr4.3:11103042-11103061 MS.gene030907:intron 20.0%
!! TGTGTATTCATGTAAATTAA+AGG - chr4.3:11103664-11103683 None:intergenic 20.0%
!! TTAATAGCAATAGATAAAGA+AGG - chr4.3:11105608-11105627 None:intergenic 20.0%
!! TTTATATAATAGCATCCTAA+AGG + chr4.3:11102694-11102713 MS.gene030907:intron 20.0%
!!! AACTTGATGTTTTCTTTTAA+GGG + chr4.3:11103071-11103090 MS.gene030907:intron 20.0%
!!! GTATATTCTTTTTGTGATTT+AGG + chr4.3:11104228-11104247 MS.gene030907:intron 20.0%
!!! TAACTTGATGTTTTCTTTTA+AGG + chr4.3:11103070-11103089 MS.gene030907:intron 20.0%
! AAAATCGTATATAAGGTTTG+CGG + chr4.3:11105655-11105674 MS.gene030907:CDS 25.0%
! AAACGACAACTAAAAAAGAA+CGG + chr4.3:11104193-11104212 MS.gene030907:intron 25.0%
! AAATATTCCAGAACCAATAA+CGG - chr4.3:11102429-11102448 None:intergenic 25.0%
! AACATAAGCAAAGAAAAGTA+CGG - chr4.3:11104859-11104878 None:intergenic 25.0%
! AATATAAAACCCTCCTTATT+TGG - chr4.3:11103429-11103448 None:intergenic 25.0%
! AATTGGAATTTCAGCTTATT+GGG + chr4.3:11105448-11105467 MS.gene030907:CDS 25.0%
! ACACTCAAAAGTTTATAAGT+TGG - chr4.3:11102747-11102766 None:intergenic 25.0%
! ACTATTATACGAAAATCATC+AGG - chr4.3:11104600-11104619 None:intergenic 25.0%
! AGAATCTTAGAGAATTCAAA+AGG - chr4.3:11103120-11103139 None:intergenic 25.0%
! CAAATAAAATTGAACTCTTG+CGG + chr4.3:11102769-11102788 MS.gene030907:intron 25.0%
! CTAAACATTAGTGAATCTTA+TGG - chr4.3:11103610-11103629 None:intergenic 25.0%
! CTATTATACGAAAATCATCA+GGG - chr4.3:11104599-11104618 None:intergenic 25.0%
! GAGAGTTTGAAAAAAAAGAA+AGG - chr4.3:11103515-11103534 None:intergenic 25.0%
! TATAAATTTGGGTGCTTTAT+TGG - chr4.3:11103024-11103043 None:intergenic 25.0%
!! AAAAAAAAGAAAGGTGTAAG+TGG - chr4.3:11103506-11103525 None:intergenic 25.0%
!! ATATAAAACCCTCCTTATTT+GGG - chr4.3:11103428-11103447 None:intergenic 25.0%
!! ATTGTATTGAATGATGGTTT+TGG - chr4.3:11103394-11103413 None:intergenic 25.0%
!! TTGTATTGAATGATGGTTTT+GGG - chr4.3:11103393-11103412 None:intergenic 25.0%
!! TTTGTTTATCTTTTCACTTG+TGG + chr4.3:11105325-11105344 MS.gene030907:CDS 25.0%
!! TTTTATCAATAGATCCAAGA+AGG - chr4.3:11105637-11105656 None:intergenic 25.0%
!!! AATAGCCACTTTTAATATTG+TGG - chr4.3:11103050-11103069 None:intergenic 25.0%
!!! GCTTTATTGGTTTTAACTTT+GGG - chr4.3:11103011-11103030 None:intergenic 25.0%
!!! TGCTTTATTGGTTTTAACTT+TGG - chr4.3:11103012-11103031 None:intergenic 25.0%
!!! TTGATTATTGGTTCTTCAAT+TGG + chr4.3:11105431-11105450 MS.gene030907:CDS 25.0%
!!! TTTTTTTAGTTCCCCAAATA+AGG + chr4.3:11103413-11103432 MS.gene030907:intron 25.0%
AAGGAGATATTATTCAAGTG+AGG + chr4.3:11105364-11105383 MS.gene030907:CDS 30.0%
AATTGTATCCATTCTACAAG+AGG - chr4.3:11103845-11103864 None:intergenic 30.0%
ATGGATACAATTACTCGAAA+AGG + chr4.3:11103853-11103872 MS.gene030907:intron 30.0%
ATTATCTTCATAGTAATCGC+CGG + chr4.3:11104759-11104778 MS.gene030907:CDS 30.0%
ATTGAGATTGTAGCATTCAT+AGG - chr4.3:11105233-11105252 None:intergenic 30.0%
CAATTGGAATTTCAGCTTAT+TGG + chr4.3:11105447-11105466 MS.gene030907:CDS 30.0%
CTCACAAAACAAATAGACTA+AGG - chr4.3:11103570-11103589 None:intergenic 30.0%
GATCAGATTAAACATACTAG+TGG + chr4.3:11105752-11105771 MS.gene030907:CDS 30.0%
GCTATTAACATATTCCTTCT+TGG + chr4.3:11105620-11105639 MS.gene030907:CDS 30.0%
GCTTACTTAAGAGTAGAATT+GGG + chr4.3:11104462-11104481 MS.gene030907:CDS 30.0%
TAAACCTAGAGTAGAGTAAT+CGG - chr4.3:11102678-11102697 None:intergenic 30.0%
TGCTTACTTAAGAGTAGAAT+TGG + chr4.3:11104461-11104480 MS.gene030907:CDS 30.0%
! CTTGTATACTATGTGCTATT+GGG + chr4.3:11105695-11105714 MS.gene030907:CDS 30.0%
! GTACTTTTCTTTGCTTATGT+TGG + chr4.3:11104858-11104877 MS.gene030907:CDS 30.0%
! GTTTTTCCCTCTTATATTTC+AGG + chr4.3:11104429-11104448 MS.gene030907:intron 30.0%
! TATAAAACCCTCCTTATTTG+GGG - chr4.3:11103427-11103446 None:intergenic 30.0%
! TGACATTTTCGTGATTGTTT+AGG - chr4.3:11104351-11104370 None:intergenic 30.0%
! TTGTATACTATGTGCTATTG+GGG + chr4.3:11105696-11105715 MS.gene030907:CDS 30.0%
! TTTAACTTTGGGTGCTTTAT+TGG - chr4.3:11103000-11103019 None:intergenic 30.0%
!! TAAGAGGTACTCTACTAAAA+AGG - chr4.3:11103910-11103929 None:intergenic 30.0%
!!! AACGTAATTGTTTTAGCACA+AGG + chr4.3:11104321-11104340 MS.gene030907:intron 30.0%
AAACTACGGAAAATCTGTCA+TGG + chr4.3:11102265-11102284 MS.gene030907:CDS 35.0%
AACAATATAACTGCTCGTCT+TGG + chr4.3:11103793-11103812 MS.gene030907:intron 35.0%
AAGAAATAGAGGACATTAGG+AGG - chr4.3:11103483-11103502 None:intergenic 35.0%
AGAAATAGAGGACATTAGGA+GGG - chr4.3:11103482-11103501 None:intergenic 35.0%
ATAGATAAAGAAGGTAGCCA+AGG - chr4.3:11105599-11105618 None:intergenic 35.0%
ATCCTCCTTGAGTATATCAT+AGG + chr4.3:11104516-11104535 MS.gene030907:CDS 35.0%
ATTGAACCAACTAGACCAAT+TGG - chr4.3:11104939-11104958 None:intergenic 35.0%
CAAGTGAGGTAACTACAAAA+GGG + chr4.3:11105378-11105397 MS.gene030907:CDS 35.0%
CCAATAGCACATAGTATACA+AGG - chr4.3:11105697-11105716 None:intergenic 35.0%
CCTTGTATACTATGTGCTAT+TGG + chr4.3:11105694-11105713 MS.gene030907:CDS 35.0%
GACACACAATGAGATTTACT+TGG - chr4.3:11105406-11105425 None:intergenic 35.0%
GATACAATTACTCGAAAAGG+TGG + chr4.3:11103856-11103875 MS.gene030907:intron 35.0%
GCTAAGTACATTGTTTCACT+AGG + chr4.3:11105080-11105099 MS.gene030907:CDS 35.0%
GGTACTCTACTAAAAAGGAT+TGG - chr4.3:11103905-11103924 None:intergenic 35.0%
TCAAGTGAGGTAACTACAAA+AGG + chr4.3:11105377-11105396 MS.gene030907:CDS 35.0%
TGGAAGAAATAGAGGACATT+AGG - chr4.3:11103486-11103505 None:intergenic 35.0%
TTGCTTTCTTTACCGATCTT+GGG + chr4.3:11105273-11105292 MS.gene030907:CDS 35.0%
TTGTTCCTCTGTGGTTTATA+GGG + chr4.3:11105507-11105526 MS.gene030907:CDS 35.0%
TTTAAGAGTTGGGGAAACTA+CGG + chr4.3:11102251-11102270 MS.gene030907:CDS 35.0%
TTTCCCTCTTATATTTCAGG+TGG + chr4.3:11104432-11104451 MS.gene030907:intron 35.0%
TTTGTTCCTCTGTGGTTTAT+AGG + chr4.3:11105506-11105525 MS.gene030907:CDS 35.0%
! TATCTTTTCACTTGTGGCAT+TGG + chr4.3:11105331-11105350 MS.gene030907:CDS 35.0%
! TCTGGAATATTTGTGCTTAC+CGG + chr4.3:11102437-11102456 MS.gene030907:CDS 35.0%
! TGTATTGTCGTTTGTCATCT+CGG + chr4.3:11102493-11102512 MS.gene030907:CDS 35.0%
! TTCCCTCTTATATTTCAGGT+GGG + chr4.3:11104433-11104452 MS.gene030907:intron 35.0%
! TTTACCGATTACTCTACTCT+AGG + chr4.3:11102671-11102690 MS.gene030907:intron 35.0%
! TTTAGTTCCCCAAATAAGGA+GGG + chr4.3:11103417-11103436 MS.gene030907:intron 35.0%
!! CAATAAAAGGTTGGCTTAAG+AGG - chr4.3:11103926-11103945 None:intergenic 35.0%
!! GGCTTATAGCTCTAATACTT+CGG - chr4.3:11103884-11103903 None:intergenic 35.0%
!! GTGTGTCTTGTGTTGATTAT+TGG + chr4.3:11105419-11105438 MS.gene030907:CDS 35.0%
!! TGCTTTGAAAGGAATGACAA+CGG + chr4.3:11105103-11105122 MS.gene030907:CDS 35.0%
!! TTGTTATACAGAGTTTGCTG+TGG + chr4.3:11102541-11102560 MS.gene030907:CDS 35.0%
!! TTTTGTTTGCGAGTTTGAAG+TGG - chr4.3:11103547-11103566 None:intergenic 35.0%
!!! TATTGAATGATGGTTTTGGG+AGG - chr4.3:11103390-11103409 None:intergenic 35.0%
!!! TCTTTGGCTTTTTGTTCCAA+TGG + chr4.3:11105538-11105557 MS.gene030907:CDS 35.0%
!!! TTTTAGTTCCCCAAATAAGG+AGG + chr4.3:11103416-11103435 MS.gene030907:intron 35.0%
AAACCACAGAGGAACAAAGA+TGG - chr4.3:11105504-11105523 None:intergenic 40.0%
AACAGTGAGAATGGATGGAT+TGG + chr4.3:11105473-11105492 MS.gene030907:CDS 40.0%
AACTTAGGCTTCTTTGCCAT+TGG - chr4.3:11105557-11105576 None:intergenic 40.0%
ACAAAGTAGCAATCGACAAG+AGG - chr4.3:11105310-11105329 None:intergenic 40.0%
ACAATCCACCTCTTGTAGAA+TGG + chr4.3:11103834-11103853 MS.gene030907:intron 40.0%
AGATGAAGAAGACGTTGAAC+TGG + chr4.3:11102375-11102394 MS.gene030907:CDS 40.0%
ATACTCAAGGAGGATGTTTC+CGG - chr4.3:11104511-11104530 None:intergenic 40.0%
ATGACACACTTCAGCCATAT+TGG + chr4.3:11103683-11103702 MS.gene030907:intron 40.0%
CAATAGCAATAGGGTCAAGA+TGG - chr4.3:11104647-11104666 None:intergenic 40.0%
CAATTGAACAAGGTGGAACA+GGG + chr4.3:11105797-11105816 MS.gene030907:CDS 40.0%
CAATTGGAATGTCTCTACCA+GGG - chr4.3:11104923-11104942 None:intergenic 40.0%
CACAATATGAACCCTGACTA+TGG + chr4.3:11104621-11104640 MS.gene030907:CDS 40.0%
CATAGTCAGGGTTCATATTG+TGG - chr4.3:11104623-11104642 None:intergenic 40.0%
CGTATATAAGGTTTGCGGTT+TGG + chr4.3:11105660-11105679 MS.gene030907:CDS 40.0%
CGTTGCCTATGATATACTCA+AGG - chr4.3:11104524-11104543 None:intergenic 40.0%
CTTTGATGCAGTTTCAACCA+TGG + chr4.3:11104881-11104900 MS.gene030907:CDS 40.0%
GACCCACCTGAAATATAAGA+GGG - chr4.3:11104438-11104457 None:intergenic 40.0%
GCAAAGAAGCCTAAGTTATG+GGG + chr4.3:11105560-11105579 MS.gene030907:CDS 40.0%
GCACTAAAAGCAACAGAGAA+AGG - chr4.3:11105044-11105063 None:intergenic 40.0%
GGCAAAGAAGCCTAAGTTAT+GGG + chr4.3:11105559-11105578 MS.gene030907:CDS 40.0%
GGTGTAAGTGGAAGAAATAG+AGG - chr4.3:11103494-11103513 None:intergenic 40.0%
GGTTGAGAAGCAATTGAACA+AGG + chr4.3:11105787-11105806 MS.gene030907:CDS 40.0%
GTTCGATAGAATCCCAAGAT+CGG - chr4.3:11105288-11105307 None:intergenic 40.0%
GTTCTTAGTTTCTTCAGCCA+TGG - chr4.3:11104901-11104920 None:intergenic 40.0%
TATTGGGCTAACAGTGAGAA+TGG + chr4.3:11105464-11105483 MS.gene030907:CDS 40.0%
TCAAAAGAACGACTTCTTCC+CGG + chr4.3:11102220-11102239 MS.gene030907:CDS 40.0%
TCATCAACAAGAGCAAACCA+AGG - chr4.3:11105197-11105216 None:intergenic 40.0%
TGACCCACCTGAAATATAAG+AGG - chr4.3:11104439-11104458 None:intergenic 40.0%
TGAGAAGCAATTGAACAAGG+TGG + chr4.3:11105790-11105809 MS.gene030907:CDS 40.0%
TGCCTATGATATACTCAAGG+AGG - chr4.3:11104521-11104540 None:intergenic 40.0%
TGGCAAAGAAGCCTAAGTTA+TGG + chr4.3:11105558-11105577 MS.gene030907:CDS 40.0%
TGTATCCATTCTACAAGAGG+TGG - chr4.3:11103842-11103861 None:intergenic 40.0%
TGTGGCTATGTAGTTGAAGA+TGG - chr4.3:11104721-11104740 None:intergenic 40.0%
TTTGTTGCCTTTATAGCTGC+CGG + chr4.3:11104489-11104508 MS.gene030907:CDS 40.0%
! AGTGAAGTCGTGGAAGTTTT+CGG - chr4.3:11104802-11104821 None:intergenic 40.0%
! ATCAGGGTTTTTGTTGCAGA+GGG - chr4.3:11104583-11104602 None:intergenic 40.0%
! CGAGTTTGAAGTGGAATAGA+GGG - chr4.3:11103538-11103557 None:intergenic 40.0%
! GACATTCCAATTGGTCTAGT+TGG + chr4.3:11104930-11104949 MS.gene030907:CDS 40.0%
! GAGTTTGAAGTGGAATAGAG+GGG - chr4.3:11103537-11103556 None:intergenic 40.0%
! GCTCTTGTTGATGAAAGAAC+AGG + chr4.3:11105203-11105222 MS.gene030907:CDS 40.0%
! GGGCATATCTGCTTTGTTAT+CGG + chr4.3:11102514-11102533 MS.gene030907:CDS 40.0%
! GTATTGTCGTTTGTCATCTC+GGG + chr4.3:11102494-11102513 MS.gene030907:CDS 40.0%
! GTTGCTTTCTTTACCGATCT+TGG + chr4.3:11105272-11105291 MS.gene030907:CDS 40.0%
! GTTTCACTAGGTGCTTTGAA+AGG + chr4.3:11105092-11105111 MS.gene030907:CDS 40.0%
!! AAAGGTACTCCCCATAACTT+AGG - chr4.3:11105572-11105591 None:intergenic 40.0%
!! ACATACTAGTGGTTCTGATC+AGG + chr4.3:11105763-11105782 MS.gene030907:CDS 40.0%
!! AGAGTTTGCTGTGGAAATTC+CGG + chr4.3:11102550-11102569 MS.gene030907:CDS 40.0%
!! AGGAATGACAACGGTTTTGT+TGG + chr4.3:11105112-11105131 MS.gene030907:CDS 40.0%
!! GTAGAAAAAGTACCTGCAAC+CGG - chr4.3:11102572-11102591 None:intergenic 40.0%
!! GTTTTGTTGGTTAGTGCTGT+TGG + chr4.3:11105125-11105144 MS.gene030907:CDS 40.0%
!! TAAGTTATGGGGAGTACCTT+TGG + chr4.3:11105571-11105590 MS.gene030907:CDS 40.0%
!! TTTGGTGCTGTAAACTGCAA+GGG - chr4.3:11104691-11104710 None:intergenic 40.0%
!!! AATGATGGTTTTGGGAGGTT+TGG - chr4.3:11103385-11103404 None:intergenic 40.0%
!!! CTGTTGCTTTTAGTGCTGTT+GGG + chr4.3:11105048-11105067 MS.gene030907:CDS 40.0%
!!! TCTGTTGCTTTTAGTGCTGT+TGG + chr4.3:11105047-11105066 MS.gene030907:CDS 40.0%
AAACGATCCTTCAACCGGAA+AGG - chr4.3:11102296-11102315 None:intergenic 45.0%
AACTCTTAAACGACTCCTCC+GGG - chr4.3:11102241-11102260 None:intergenic 45.0%
AATAGAGGACATTAGGAGGG+AGG - chr4.3:11103479-11103498 None:intergenic 45.0%
ACAAACGACAATACAACCGC+CGG - chr4.3:11102488-11102507 None:intergenic 45.0%
ACACCATCTTTGTTCCTCTG+TGG + chr4.3:11105498-11105517 MS.gene030907:CDS 45.0%
ACTAGGGCTGCAATAGCAAT+AGG - chr4.3:11104657-11104676 None:intergenic 45.0%
ATAGAGGACATTAGGAGGGA+GGG - chr4.3:11103478-11103497 None:intergenic 45.0%
ATCTAGTGATCATGCAGAGC+TGG + chr4.3:11102325-11102344 MS.gene030907:CDS 45.0%
ATTTGTGCTTACCGGACTTG+AGG + chr4.3:11102445-11102464 MS.gene030907:CDS 45.0%
CAACTCTTAAACGACTCCTC+CGG - chr4.3:11102242-11102261 None:intergenic 45.0%
CATAGCCACACTCTTACACA+TGG + chr4.3:11104731-11104750 MS.gene030907:CDS 45.0%
CCAATTGGAATGTCTCTACC+AGG - chr4.3:11104924-11104943 None:intergenic 45.0%
CCTGGTAGAGACATTCCAAT+TGG + chr4.3:11104921-11104940 MS.gene030907:CDS 45.0%
CTAGGGCTGCAATAGCAATA+GGG - chr4.3:11104656-11104675 None:intergenic 45.0%
CTGTCATGGAAACACCTTTC+CGG + chr4.3:11102279-11102298 MS.gene030907:CDS 45.0%
CTTGCAGTTTACAGCACCAA+AGG + chr4.3:11104690-11104709 MS.gene030907:CDS 45.0%
GAAGAAGACGTTGAACTGGT+GGG + chr4.3:11102379-11102398 MS.gene030907:CDS 45.0%
GAGGAGTCGTTTAAGAGTTG+GGG + chr4.3:11102242-11102261 MS.gene030907:CDS 45.0%
GATGTTTCCGGCAGCTATAA+AGG - chr4.3:11104499-11104518 None:intergenic 45.0%
GCAACAAACGATCCTTCAAC+CGG - chr4.3:11102301-11102320 None:intergenic 45.0%
GCAATTGAACAAGGTGGAAC+AGG + chr4.3:11105796-11105815 MS.gene030907:CDS 45.0%
GCTGAAGAAACTAAGAACCC+TGG + chr4.3:11104903-11104922 MS.gene030907:CDS 45.0%
GGAGGAGTCGTTTAAGAGTT+GGG + chr4.3:11102241-11102260 MS.gene030907:CDS 45.0%
GTTGAAGATGGAAGAGCCTT+TGG - chr4.3:11104709-11104728 None:intergenic 45.0%
TCAACAAGAGCAAACCAAGG+TGG - chr4.3:11105194-11105213 None:intergenic 45.0%
TGAAGAAGACGTTGAACTGG+TGG + chr4.3:11102378-11102397 MS.gene030907:CDS 45.0%
TGGAGATTAAGGCTAGGAGT+GGG + chr4.3:11102348-11102367 MS.gene030907:CDS 45.0%
TTCCACGACTTCACTCCTTT+CGG + chr4.3:11104807-11104826 MS.gene030907:CDS 45.0%
! ATAAGGTTTGCGGTTTGGAC+AGG + chr4.3:11105665-11105684 MS.gene030907:CDS 45.0%
! CATCAGGGTTTTTGTTGCAG+AGG - chr4.3:11104584-11104603 None:intergenic 45.0%
! GCGAGTTTGAAGTGGAATAG+AGG - chr4.3:11103539-11103558 None:intergenic 45.0%
! GTGAAGTCGTGGAAGTTTTC+GGG - chr4.3:11104801-11104820 None:intergenic 45.0%
! TAAGGTTTGCGGTTTGGACA+GGG + chr4.3:11105666-11105685 MS.gene030907:CDS 45.0%
! TAGTGCTGTTGGGATGGATT+GGG + chr4.3:11105058-11105077 MS.gene030907:CDS 45.0%
! TTAGTGCTGTTGGGATGGAT+TGG + chr4.3:11105057-11105076 MS.gene030907:CDS 45.0%
! TTATAGGGACTGGTGCTCTT+TGG + chr4.3:11105522-11105541 MS.gene030907:CDS 45.0%
!! CTTTGGTGCTGTAAACTGCA+AGG - chr4.3:11104692-11104711 None:intergenic 45.0%
!! GACTTGATGTGGTTCGGTAT+CGG + chr4.3:11102401-11102420 MS.gene030907:CDS 45.0%
!! TACTAGTGGTTCTGATCAGG+AGG + chr4.3:11105766-11105785 MS.gene030907:CDS 45.0%
!! TGCTTTTAGTGCTGTTGGGA+TGG + chr4.3:11105052-11105071 MS.gene030907:CDS 45.0%
!! TGGCATTGGCACTTCTAGTA+AGG + chr4.3:11105345-11105364 MS.gene030907:CDS 45.0%
!! AAAAAATTATAAAAAAAGTA+CGG - chr4.3:11102904-11102923 None:intergenic 5.0%
!!! TATAACTTTATTTTTTATTA+TGG + chr4.3:11103630-11103649 MS.gene030907:intron 5.0%
AAAGAACGACTTCTTCCCGG+AGG + chr4.3:11102223-11102242 MS.gene030907:CDS 50.0%
AAGGGCTGTGATGGCTACTA+GGG - chr4.3:11104673-11104692 None:intergenic 50.0%
AGCTGGTGGAGATTAAGGCT+AGG + chr4.3:11102342-11102361 MS.gene030907:CDS 50.0%
CCAGTCCCTATAAACCACAG+AGG - chr4.3:11105515-11105534 None:intergenic 50.0%
CCTCTGTGGTTTATAGGGAC+TGG + chr4.3:11105512-11105531 MS.gene030907:CDS 50.0%
CGGAGGAGTCGTTTAAGAGT+TGG + chr4.3:11102240-11102259 MS.gene030907:CDS 50.0%
GAAGGTAGCCAAGGAACCAA+AGG - chr4.3:11105590-11105609 None:intergenic 50.0%
GACAGCCATGTGTAAGAGTG+TGG - chr4.3:11104739-11104758 None:intergenic 50.0%
GGAAACACCTTTCCGGTTGA+AGG + chr4.3:11102286-11102305 MS.gene030907:CDS 50.0%
GGGCTAACAGTGAGAATGGA+TGG + chr4.3:11105468-11105487 MS.gene030907:CDS 50.0%
GGTCAAGATGGCCATAGTCA+GGG - chr4.3:11104635-11104654 None:intergenic 50.0%
GTAAACTGCAAGGGCTGTGA+TGG - chr4.3:11104682-11104701 None:intergenic 50.0%
GTACTCACATGATGCCACCT+TGG + chr4.3:11105177-11105196 MS.gene030907:CDS 50.0%
GTATATCATAGGCAACGCCG+CGG + chr4.3:11104527-11104546 MS.gene030907:CDS 50.0%
GTGGAGATTAAGGCTAGGAG+TGG + chr4.3:11102347-11102366 MS.gene030907:CDS 50.0%
TAGAGGACATTAGGAGGGAG+GGG - chr4.3:11103477-11103496 None:intergenic 50.0%
TAGTGATCATGCAGAGCTGG+TGG + chr4.3:11102328-11102347 MS.gene030907:CDS 50.0%
TCCACGACTTCACTCCTTTC+GGG + chr4.3:11104808-11104827 MS.gene030907:CDS 50.0%
TGAACTGGTGGGACTTGATG+TGG + chr4.3:11102390-11102409 MS.gene030907:CDS 50.0%
TGCAGAGCTGGTGGAGATTA+AGG + chr4.3:11102337-11102356 MS.gene030907:CDS 50.0%
TGGTGGGACTTGATGTGGTT+CGG + chr4.3:11102395-11102414 MS.gene030907:CDS 50.0%
TTCACTCCTTTCGGGCTTCA+CGG + chr4.3:11104816-11104835 MS.gene030907:CDS 50.0%
! AGGGTTTTTGTTGCAGAGGG+TGG - chr4.3:11104580-11104599 None:intergenic 50.0%
!! GGGCTTGGCTTTGATTAGAC+CGG - chr4.3:11104781-11104800 None:intergenic 50.0%
ACATTAGGAGGGAGGGGCTT+TGG - chr4.3:11103471-11103490 None:intergenic 55.0%
ACCATACCGTGAAGCCCGAA+AGG - chr4.3:11104825-11104844 None:intergenic 55.0%
ATTAGGAGGGAGGGGCTTTG+GGG - chr4.3:11103469-11103488 None:intergenic 55.0%
CAAGGGCTGTGATGGCTACT+AGG - chr4.3:11104674-11104693 None:intergenic 55.0%
CATTAGGAGGGAGGGGCTTT+GGG - chr4.3:11103470-11103489 None:intergenic 55.0%
GCTGTGGAAATTCCGGTTGC+AGG + chr4.3:11102557-11102576 MS.gene030907:CDS 55.0%
GGGTCAAGATGGCCATAGTC+AGG - chr4.3:11104636-11104655 None:intergenic 55.0%
TCCTTTCGGGCTTCACGGTA+TGG + chr4.3:11104821-11104840 MS.gene030907:CDS 55.0%
TGCTTACCGGACTTGAGGCT+AGG + chr4.3:11102450-11102469 MS.gene030907:CDS 55.0%
TTCCTGCCTAGCCTCAAGTC+CGG - chr4.3:11102459-11102478 None:intergenic 55.0%
!! ATCGGCGCCGTTATTGGTTC+TGG + chr4.3:11102419-11102438 MS.gene030907:CDS 55.0%
!! GGGGAGTACCTTTGGTTCCT+TGG + chr4.3:11105579-11105598 MS.gene030907:CDS 55.0%
!! GTCGTGGAAGTTTTCGGGCT+TGG - chr4.3:11104796-11104815 None:intergenic 55.0%
!! TTCGGTATCGGCGCCGTTAT+TGG + chr4.3:11102413-11102432 MS.gene030907:CDS 55.0%
CTTGAGGCTAGGCAGGAAGC+AGG + chr4.3:11102461-11102480 MS.gene030907:CDS 60.0%
GCAGAGGGTGGCGAAATACG+AGG - chr4.3:11104568-11104587 None:intergenic 60.0%
GCAGTTGGAGAGGTGGTCGA+TGG + chr4.3:11102167-11102186 MS.gene030907:CDS 60.0%
GCCCGAAAGGAGTGAAGTCG+TGG - chr4.3:11104812-11104831 None:intergenic 60.0%
GGTCCATGATCGAGCTACCG+CGG - chr4.3:11104547-11104566 None:intergenic 60.0%
GTTGGAGAGGTGGTCGATGG+CGG + chr4.3:11102170-11102189 MS.gene030907:CDS 60.0%
TACCGGACTTGAGGCTAGGC+AGG + chr4.3:11102454-11102473 MS.gene030907:CDS 60.0%
! TTAGGAGGGAGGGGCTTTGG+GGG - chr4.3:11103468-11103487 None:intergenic 60.0%
ACGCCGCGGTAGCTCGATCA+TGG + chr4.3:11104541-11104560 MS.gene030907:CDS 65.0%
GGCTAGGCAGGAAGCAGGTC+CGG + chr4.3:11102466-11102485 MS.gene030907:CDS 65.0%
TAGGCAGGAAGCAGGTCCGG+CGG + chr4.3:11102469-11102488 MS.gene030907:CDS 65.0%
! TCGATGGCGGCGGAGTACGT+AGG + chr4.3:11102183-11102202 MS.gene030907:CDS 65.0%
GGCGGCGGAGTACGTAGGAG+AGG + chr4.3:11102188-11102207 MS.gene030907:CDS 70.0%
! GGAGAGGTGGTCGATGGCGG+CGG + chr4.3:11102173-11102192 MS.gene030907:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 11102164 11105850 11102164 ID=MS.gene030907
chr4.3 mRNA 11102164 11105850 11102164 ID=MS.gene030907.t1;Parent=MS.gene030907
chr4.3 exon 11102164 11102578 11102164 ID=MS.gene030907.t1.exon1;Parent=MS.gene030907.t1
chr4.3 CDS 11102164 11102578 11102164 ID=cds.MS.gene030907.t1;Parent=MS.gene030907.t1
chr4.3 exon 11104451 11105850 11104451 ID=MS.gene030907.t1.exon2;Parent=MS.gene030907.t1
chr4.3 CDS 11104451 11105850 11104451 ID=cds.MS.gene030907.t1;Parent=MS.gene030907.t1
Gene Sequence

>MS.gene030907

ATGGCAGTTGGAGAGGTGGTCGATGGCGGCGGAGTACGTAGGAGAGGATGTACGTTTCAAAAGAACGACTTCTTCCCGGAGGAGTCGTTTAAGAGTTGGGGAAACTACGGAAAATCTGTCATGGAAACACCTTTCCGGTTGAAGGATCGTTTGTTGCAAAGATCTAGTGATCATGCAGAGCTGGTGGAGATTAAGGCTAGGAGTGGGAATGAGATGAAGAAGACGTTGAACTGGTGGGACTTGATGTGGTTCGGTATCGGCGCCGTTATTGGTTCTGGAATATTTGTGCTTACCGGACTTGAGGCTAGGCAGGAAGCAGGTCCGGCGGTTGTATTGTCGTTTGTCATCTCGGGCATATCTGCTTTGTTATCGGTATTTTGTTATACAGAGTTTGCTGTGGAAATTCCGGTTGCAGGTACTTTTTCTACTCTCACTATACTCTTTCTTATGCGTTATAATATTATGATTTGCATTAAATTTAATTTAGGGCATTGACAATAAGAAACTTTTACCGATTACTCTACTCTAGGTTTATATAATAGCATCCTAAAGGTAAACAAAAAATTATAAGAGTATCACACCAACTTATAAACTTTTGAGTGTTACAAATAAAATTGAACTCTTGCGGATAATGATTTTCCCATAATTGAGAATTCAACTTTTTGAAACAATATTGACAATATTTTAGGAATGACACTGTTATTTATCAATCAATAAATAAATAATTAAATCGAATACCGTACTTTTTTTATAATTTTTTAATATTAATGTTTAGATAAATACTGAATTTCATCAACTCAACACTTACAACAAAGAAATAATAGATAGGTTCACCAATAAAGCACCCAAAGTTAAAACCAATAAAGCACCCAAATTTATAATTCCACAATATTAAAAGTGGCTATTTAACTTGATGTTTTCTTTTAAGGGATTTAACTTGATGTTAAATACTACCTTTTGAATTCTCTAAGATTCTAAGATTTTTACAACCTCGATGCATATTAATTAATTTAGACGAAAGATCGATTTATTTAAGTCTATAAAAAAATGTGGCACTCAATTTTTATTTTTAAAGAAAAAAAAAACTATTGTGTCATGAGTTGATAGTTCTTTGTTTGACAAACATGAGTTGATAATTCTAAATATACATTTACTTTTTACAACTTTTGTTTTTAACAAATTATCCAACAAATTCTTAATAATTTCATATAAACTCTTCCAAACCTCCCAAAACCATCATTCAATACAATTTTTTTAGTTCCCCAAATAAGGAGGGTTTTATATTTTGAAGAAAAATAAGGCCCCCAAAGCCCCTCCCTCCTAATGTCCTCTATTTCTTCCACTTACACCTTTCTTTTTTTTCAAACTCTCCCCTCTATTCCACTTCAAACTCGCAAACAAAACCTTAGTCTATTTGTTTTGTGAGAAACCGATATTTTACTACCATAAGATTCACTAATGTTTAGTATAACTTTATTTTTTATTATGGTATAATATCCTTTAATTTACATGAATACACATGACACACTTCAGCCATATTGGAATAAATAGTGTATTCCTTTAATTTATATTTATATTTATCAAATCACTAATATAGATGTTAGCAACAGAAGAGACATGTGTTTAAAAAACAATATAACTGCTCGTCTTGGATTGAGACAATACAAAAGACAATCCACCTCTTGTAGAATGGATACAATTACTCGAAAAGGTGGCACCGAAGTATTAGAGCTATAAGCCAATCCTTTTTAGTAGAGTACCTCTTAAGCCAACCTTTTATTGATAATCTTTATATTCTTTTATGTTGATTTATCATTGATTTTTATAATTCAATGTAAGATTGAATATTTTTTTTGAATAACTGTAAGATTGAATATTGTTTTATCAATTATATCATTAAATACTTATTGCAGAGAAAAATAAAATAATTAAGACAATAAAATGTTAAGGTACGTAATGTAAAAAACTACAAATAATTTCTTCAAAACTAACAGTTTATTAGTTGTATTGATACGTGAATATAAACTTAAAACGACAACTAAAAAAGAACGGTGACACTTGAGAGTATATTCTTTTTGTGATTTAGGGAAAGATTATTAGCAGTTTTTTTTTTAATATTTTTTTGAATAAGCAAAAATGAATTATATTAACACGGACAACGTAATTGTTTTAGCACAAGGTGTGCCTAAACAATCACGAAAATGTCAAATGTCACGTAATTGTTATTAACAAGTTTTTTTTTTTAATATTGGTTTGTGTTTATACGTTTTTCCCTCTTATATTTCAGGTGGGTCATTTGCTTACTTAAGAGTAGAATTGGGAGATTTTGTTGCCTTTATAGCTGCCGGAAACATCCTCCTTGAGTATATCATAGGCAACGCCGCGGTAGCTCGATCATGGACCTCGTATTTCGCCACCCTCTGCAACAAAAACCCTGATGATTTTCGTATAATAGTCCACAATATGAACCCTGACTATGGCCATCTTGACCCTATTGCTATTGCAGCCCTAGTAGCCATCACAGCCCTTGCAGTTTACAGCACCAAAGGCTCTTCCATCTTCAACTACATAGCCACACTCTTACACATGGCTGTCATTATCTTCATAGTAATCGCCGGTCTAATCAAAGCCAAGCCCGAAAACTTCCACGACTTCACTCCTTTCGGGCTTCACGGTATGGTCAATGCTTCAGCCGTACTTTTCTTTGCTTATGTTGGCTTTGATGCAGTTTCAACCATGGCTGAAGAAACTAAGAACCCTGGTAGAGACATTCCAATTGGTCTAGTTGGTTCAATGACGATTACAACAATAATCTATTGCTTACTAGCAGCAACACTGTGTCTTATGCAGAACTACAAAGAACTAAATGTTGATGCTCCTTTCTCTGTTGCTTTTAGTGCTGTTGGGATGGATTGGGCTAAGTACATTGTTTCACTAGGTGCTTTGAAAGGAATGACAACGGTTTTGTTGGTTAGTGCTGTTGGTCAAGCTCGTTACTTAACTCACATTGCACGTACTCACATGATGCCACCTTGGTTTGCTCTTGTTGATGAAAGAACAGGAACACCTATGAATGCTACAATCTCAATGCTTATCGCTACTGCTATCGTTGCTTTCTTTACCGATCTTGGGATTCTATCGAACCTCTTGTCGATTGCTACTTTGTTTATCTTTTCACTTGTGGCATTGGCACTTCTAGTAAGGAGATATTATTCAAGTGAGGTAACTACAAAAGGGAACCAAGTAAATCTCATTGTGTGTCTTGTGTTGATTATTGGTTCTTCAATTGGAATTTCAGCTTATTGGGCTAACAGTGAGAATGGATGGATTGGATACACCATCTTTGTTCCTCTGTGGTTTATAGGGACTGGTGCTCTTTGGCTTTTTGTTCCAATGGCAAAGAAGCCTAAGTTATGGGGAGTACCTTTGGTTCCTTGGCTACCTTCTTTATCTATTGCTATTAACATATTCCTTCTTGGATCTATTGATAAAAAATCGTATATAAGGTTTGCGGTTTGGACAGGGTTTCTCCTTGTATACTATGTGCTATTGGGGTTACATGCTTCATATGACACTGCAAAAGAGTTTGATCAGATTAAACATACTAGTGGTTCTGATCAGGAGGTTGAGAAGCAATTGAACAAGGTGGAACAGGGTGCTGTCGAACAAGACTCTAGTGTTGCTTAA
Protein sequence

>MS.gene030907.t1

MAVGEVVDGGGVRRRGCTFQKNDFFPEESFKSWGNYGKSVMETPFRLKDRLLQRSSDHAELVEIKARSGNEMKKTLNWWDLMWFGIGAVIGSGIFVLTGLEARQEAGPAVVLSFVISGISALLSVFCYTEFAVEIPVAGGSFAYLRVELGDFVAFIAAGNILLEYIIGNAAVARSWTSYFATLCNKNPDDFRIIVHNMNPDYGHLDPIAIAALVAITALAVYSTKGSSIFNYIATLLHMAVIIFIVIAGLIKAKPENFHDFTPFGLHGMVNASAVLFFAYVGFDAVSTMAEETKNPGRDIPIGLVGSMTITTIIYCLLAATLCLMQNYKELNVDAPFSVAFSAVGMDWAKYIVSLGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWFALVDERTGTPMNATISMLIATAIVAFFTDLGILSNLLSIATLFIFSLVALALLVRRYYSSEVTTKGNQVNLIVCLVLIIGSSIGISAYWANSENGWIGYTIFVPLWFIGTGALWLFVPMAKKPKLWGVPLVPWLPSLSIAINIFLLGSIDKKSYIRFAVWTGFLLVYYVLLGLHASYDTAKEFDQIKHTSGSDQEVEKQLNKVEQGAVEQDSSVA