AlfalfaGEDB | MS.gene031736

M. sativa cultivar XinJiangDaYe / MS.gene031736

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031736.t1	RHN61740.1	94.7	494	26	0	1	494	8	501	4.50E-268	933.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031736.t1	Q8VWZ7	54.7	488	215	3	6	492	11	493	3.0e-151	536.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031736.t1	A0A396I806	94.7	494	26	0	1	494	8	501	3.3e-268	933.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002268	MS.gene031736	PPI
MS.gene002271	MS.gene031736	PPI
MS.gene002272	MS.gene031736	PPI
MS.gene002273	MS.gene031736	PPI
MS.gene005830	MS.gene031736	PPI
MS.gene006453	MS.gene031736	PPI
MS.gene006454	MS.gene031736	PPI
MS.gene00811	MS.gene031736	PPI
MS.gene010418	MS.gene031736	PPI
MS.gene011756	MS.gene031736	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene031736.t1	MTR_4g078110	91.093	494	29	1	1	494	1	479	897
MS.gene031736.t1	MTR_1g103670	61.837	490	182	3	1	489	9	494	634
MS.gene031736.t1	MTR_1g031700	60.366	492	191	2	6	494	9	499	627
MS.gene031736.t1	MTR_8g046240	57.404	493	209	1	1	492	14	506	608
MS.gene031736.t1	MTR_1g103680	63.083	493	180	2	1	492	7	498	607
MS.gene031736.t1	MTR_1g037370	62.179	468	176	1	27	494	30	496	594
MS.gene031736.t1	MTR_8g046210	58.621	493	202	2	1	492	15	506	586
MS.gene031736.t1	MTR_5g007450	56.250	496	205	5	1	494	15	500	579
MS.gene031736.t1	MTR_5g007460	57.652	477	198	2	22	494	3	479	578
MS.gene031736.t1	MTR_5g007550	56.048	496	206	5	1	494	15	500	573

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031736.t1	AT1G33720	45.272	497	265	4	1	491	11	506	6.81e-159	461
MS.gene031736.t1	AT2G45560	44.869	497	267	4	1	491	11	506	8.10e-159	461
MS.gene031736.t1	AT2G45550	44.890	499	265	5	2	491	9	506	2.69e-157	457
MS.gene031736.t1	AT3G61040	47.436	468	239	3	27	491	32	495	3.02e-156	454
MS.gene031736.t1	AT2G45570	45.987	461	241	4	38	491	48	507	4.12e-149	436
MS.gene031736.t1	AT2G45580	44.685	461	247	3	38	491	48	507	6.79e-148	433
MS.gene031736.t1	AT1G33720	47.594	374	190	3	123	491	2	374	6.88e-124	367
MS.gene031736.t1	AT1G33720	47.594	374	190	3	123	491	2	374	6.88e-124	367
MS.gene031736.t1	AT1G33720	47.594	374	190	3	123	491	2	374	6.88e-124	367
MS.gene031736.t1	AT1G33730	48.209	363	180	4	129	485	4	364	5.12e-121	359

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Find 112 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTACCAAAGATAAATGT+TGG	0.474018	4.3:-30974115	None:intergenic
AAGACTCTTGATGAGAGTAA+GGG	0.606440	4.3:+30973660	MS.gene031736:CDS
AAGGGAAGAGGAGTAGGTCC+TGG	0.560551	4.3:-30973345	None:intergenic
AATACAAATGTGGAAATTTG+TGG	0.467273	4.3:+30976172	MS.gene031736:CDS
AATAGAAGATATGAACATGG+AGG	0.710580	4.3:+30976459	MS.gene031736:CDS
AATTTCAGCTAATTTGGCTA+AGG	0.528580	4.3:-30973409	None:intergenic
AATTTCATCTACGCTAGAAT+GGG	0.514797	4.3:+30975964	MS.gene031736:CDS
AATTTCGAGCTTACACCATT+TGG	0.395915	4.3:+30976328	MS.gene031736:CDS
AATTTGGCTAAGGATTTGTG+AGG	0.690002	4.3:-30973399	None:intergenic
AATTTGTCCTGGTCTAACGC+TGG	0.637094	4.3:+30976363	MS.gene031736:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACATCATCGAATTTAG+TGG	+	chr4.3:30975674-30975693	MS.gene031736:intron	30.0%
AACGATATTGAGCGTAATAT+TGG	+	chr4.3:30975335-30975354	MS.gene031736:intron	30.0%
AATAGAAGATATGAACATGG+AGG	+	chr4.3:30976459-30976478	MS.gene031736:CDS	30.0%
AATTTCAGCTAATTTGGCTA+AGG	-	chr4.3:30973412-30973431	None:intergenic	30.0%
AATTTCATCTACGCTAGAAT+GGG	+	chr4.3:30975964-30975983	MS.gene031736:CDS	30.0%
AGAATGTCATGCTATATTTG+TGG	-	chr4.3:30973578-30973597	None:intergenic	30.0%
AGCAATATCTGATTCATCTA+AGG	-	chr4.3:30976071-30976090	None:intergenic	30.0%
AGCTGTTGATATTGGAAATA+TGG	+	chr4.3:30973746-30973765	MS.gene031736:CDS	30.0%
ATCGAATTTAGTGGTATTTG+GGG	+	chr4.3:30975683-30975702	MS.gene031736:intron	30.0%
CATCGAATTTAGTGGTATTT+GGG	+	chr4.3:30975682-30975701	MS.gene031736:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	30973258	30976549	30973258	ID=MS.gene031736
chr4.3	mRNA	30973258	30976549	30973258	ID=MS.gene031736.t1;Parent=MS.gene031736
chr4.3	exon	30973258	30974130	30973258	ID=MS.gene031736.t1.exon1;Parent=MS.gene031736.t1
chr4.3	CDS	30973258	30974130	30973258	ID=cds.MS.gene031736.t1;Parent=MS.gene031736.t1
chr4.3	exon	30975938	30976549	30975938	ID=MS.gene031736.t1.exon2;Parent=MS.gene031736.t1
chr4.3	CDS	30975938	30976549	30975938	ID=cds.MS.gene031736.t1;Parent=MS.gene031736.t1

Gene Sequence

>MS.gene031736

ATGTTCTTCCTCTCTCTATTGGCATTGACTCTGTATTTTCTGCTTTCAAGAGCCAAACTCATAAACAATTCAAACATCAAGCTTCCACCAGGACCTACTCCTCTTCCCTTCATAGGAAACCTCCTTCAATTAGGAGAAAAGCCTCACAAATCCTTAGCCAAATTAGCTGAAATTTATGGCCCAATCATGAGTCTAAAGCTAGGTCAAATAACCACCATAGTTGTCTCTTCACCTAAAATGGCCAAAGAAATACTTCAAACCCATGATCAATTCTTATCAAATAAAGTCATTCCCAATGCTGTGCAAGTTCATGACCACCACAAATATAGCATGACATTCTTACCTGTTTCACCTCTTTGGAGAGACTTAAGAAAAATAGGCAATAGTCAATTACTCTCTAACAAGACTCTTGATGAGAGTAAGGGAATTAGGAGTCAGAAAGTGCAAGAATTCATCAATGATATTAATCAAAGTAGTCTTGTTAATGAAGCTGTTGATATTGGAAATATGGCTTTTAAGACATCAATCAACTTGTTGTCAAACACTATTTTCTCTATTGATTTGGTTGACTCTTCTGGTTCAGTTGGTGATTTCAAGGAGCTGGTTGTGAATATAATGGAAGAATGTGGAAAACCAAACATTGCTGATCTTTTTCCTGCACTTAGGATGTTTGACCCACAAGGTATTAAGGGTCGTACATATGTTTATGCTGGCAAGATCCTTGATATCTTCCAACGTTTGGTTGATCAACGGTTGAAGATGAGGGAAGCCAAGGGTTTTGACAGCAACAATGACATGCTAAATACCTTTCTAAACATTGATCAAGCCAACACCCAAGTGATGAACAGAACCCAAATCCAACATTTATCTTTGGTACTTTCTTGTCCCTCTCCAACTAAACTAGTTAAATATATGTGTCCCCTTTGTATAGATAGTCATATTTCAGTTTCCGTGAGTTTAGCTCAATTGATAAGAACAATGCATAATATATATAAAGTTCGAGGTTAAAACCCCGGACACCAACAAAAAAAAGGTCATATTTCAGTTTAAAAATAACTAAACAATAATTCTAAATTAGATCCTCTAAAAAAAAAATTGTAGATTTGAATATCTTTTTTAACTAATTTCATATTGAAGTGGGTTAGCGTTTTATTTCATTAAGAAAGCAATCTACGTACTTTTGAGTTTTGACTAGTAAAAAACATGCACCGCAAACTAGTCCAAAAGGTGTTGATAAAGTTAAGGCGTTGATTGGACGTGTGGCTTTTGTTACGTAGGTAGATTTGCTTTTGTTTGTATTTGCAATGATTCAACTTTGTGGTTGGTGTTTATTTTGAGTAGTGATATTTGCACAATTTTTTGGAACAACTTTATTGAAAATTTTGTTTTTCTTTTATTTGATTGGTCAAAAATAATAGAGAGAGAAAAGAGAGAGAATAAAAACATGATTTGAGTATGAGAGAGAAAGTTGTCAAAAAATTGTTAGAAAATGGCTGTACAAATATCATTTCTCTTACTTTTACTATGTATGCGCCCTTAATTTCTTTGTTGGTTTGAAAAATCCCATTTTGGTTTCTTAAAAAAAAATTAAAATACATAGGTGTTGTGTTGGTACAAGAAACACAAGAATGTGCAAGTGAAATACACCCTTTAGGTTCATTGAATAATTAATGTATCCGGTTACATTTATATGTTAGATGTATTAGTTATTCAATGTACCTAAAAACTTATGTTTTGCTTATAAATATGACCGGATGGAGTATATAACAATATTACATCAATTTATGCTGGCTTTTATCCCCGACATTTACGCATGGACAATTTTAAATAGTTATATGTATACTTCTAATTTTCTAAAAAAAACATATATATTGCATTGTTTATATGTTTTTGTAAAAAAAAAATTACACAGTAGATACTTTTAACGGTTTATGCACTTTTATATAACACCGTTAAACTTGTTGTATCTCAATAACATATCAAATGATTTTAGATTTTCGTAAAAATTTAGGCGAATGATCTATGTGATATAAACTTACAATCCAACGGTCAAATTTGAAAAATATGCATCGAGTAAAACGATATTGAGCGTAATATTGGTGTAACTTTTAAATGGTGTAATTTAATCCCTCATTATATATATAGACACACACACACACACACACACACACACACTCTCTTAATTTGTACTTCCTTCGTTTACATTTATAAGCAAATATTTTGTTTTCAGATTTATTGAATAACTTATGTATACTATAATATAATTCAGATACATTAGTTATTTAATGAAGATGAAAAAACAATAGTTGCTTGTAAATGAGATCAAAGAGTATTCACTAACTATAAAAATTGTTCGCTGGTGCACACTCAATGCTTTGGTGCCATTTGCCAAAGTTATGTTCAGAAAATGGTGTGAAAACACATCATCGAATTTAGTGGTATTTGGGGAAATGATATTTGTGCAATTATTTTGTGACAACTTTATCTTTCATTTTCAACTTATGTTCTTATTCTCTCTCTTTCTTTTTATCTCTCTATTGTTTTTTACCAATTATAAGAAGAGAGAAAAAGAAGATTGTCACGAAAGTTGTCATTTTACAAATATCATTACTCTTGTCTTTGCATACTAACAATGCACCTAAATGTCGTCTATTTTGATTGAGTGTTTTTTATTTATCAGACTCTGTTTGTTGCGGGTACGGATACAATTTCATCTACGCTAGAATGGGCAATGGCAGAATTACTCAAAAATGAAAAGATTATGTCAAAAGCAAAACAAGAGCTGGAACAAATAATTGGCAAAGGAAAAACCTTAGATGAATCAGATATTGCTAAGCTTCCTTATTTACAAGCAATAATAAAAGAGACATTTCGATTGCACCCTCCCGTTCCATTCTTAGTCCCTCGAAAAGCAAATACAAATGTGGAAATTTGTGGATACACAATACCAAAAGATGCACATGTGTGGGTCAATGTGTGGGCTATTGGTAGAAATTCTAGTGTTTGGGAAAATGCAAATTTGTTTTTACCAGAGAGATTCTTAAGATCGGACATTGATGTTAAAGGTCATAATTTCGAGCTTACACCATTTGGTGCTGGGAGGCGAATTTGTCCTGGTCTAACGCTGGCGACGAGGATGTTGCATTTGATGTTGGGTTCATTAATCAACTGTTTTAACTGGAAATTGGAAGATGGAAAGATAATAGAAGATATGAACATGGAGGACAAGTTTGGGATAACATTAGCAAAGGCTCAGCCAGTAAGAGTCATTCCAGAAAAAATATACAACTAG

Protein sequence

>MS.gene031736.t1

MFFLSLLALTLYFLLSRAKLINNSNIKLPPGPTPLPFIGNLLQLGEKPHKSLAKLAEIYGPIMSLKLGQITTIVVSSPKMAKEILQTHDQFLSNKVIPNAVQVHDHHKYSMTFLPVSPLWRDLRKIGNSQLLSNKTLDESKGIRSQKVQEFINDINQSSLVNEAVDIGNMAFKTSINLLSNTIFSIDLVDSSGSVGDFKELVVNIMEECGKPNIADLFPALRMFDPQGIKGRTYVYAGKILDIFQRLVDQRLKMREAKGFDSNNDMLNTFLNIDQANTQVMNRTQIQHLSLTLFVAGTDTISSTLEWAMAELLKNEKIMSKAKQELEQIIGKGKTLDESDIAKLPYLQAIIKETFRLHPPVPFLVPRKANTNVEICGYTIPKDAHVWVNVWAIGRNSSVWENANLFLPERFLRSDIDVKGHNFELTPFGAGRRICPGLTLATRMLHLMLGSLINCFNWKLEDGKIIEDMNMEDKFGITLAKAQPVRVIPEKIYN