AlfalfaGEDB | MS.gene02234

M. sativa cultivar XinJiangDaYe / MS.gene02234

KEGG: K24184
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02234.t1	XP_003593337.1	96.5	510	18	0	1	510	1	510	5.90E-287	996.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02234.t1	Q9SRQ1	50.8	516	229	8	5	509	8	509	6.4e-149	528.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02234.t1	G7IFB0	96.5	510	18	0	1	510	1	510	4.3e-287	996.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000494	MS.gene02234	PPI
MS.gene000498	MS.gene02234	PPI
MS.gene002268	MS.gene02234	PPI
MS.gene002271	MS.gene02234	PPI
MS.gene002272	MS.gene02234	PPI
MS.gene002273	MS.gene02234	PPI
MS.gene005830	MS.gene02234	PPI
MS.gene006453	MS.gene02234	PPI
MS.gene006454	MS.gene02234	PPI
MS.gene00811	MS.gene02234	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene02234.t1	MTR_2g010380	96.471	510	18	0	1	510	1	510	969
MS.gene02234.t1	MTR_2g010330	84.510	510	77	1	1	510	1	508	873
MS.gene02234.t1	MTR_2g010250	80.784	510	94	1	1	510	1	506	848
MS.gene02234.t1	MTR_2g010320	81.961	510	86	2	1	510	1	504	825
MS.gene02234.t1	MTR_2g010300	79.020	510	87	3	1	510	1	490	800
MS.gene02234.t1	MTR_2g010290	76.275	510	101	2	1	510	44	533	791
MS.gene02234.t1	MTR_2g010280	79.216	510	100	2	1	510	1	504	778
MS.gene02234.t1	MTR_8g098565	75.486	514	115	7	1	510	1	507	719
MS.gene02234.t1	MTR_8g063280	59.922	514	182	10	3	510	4	499	604
MS.gene02234.t1	MTR_5g034900	55.714	490	202	5	34	510	31	518	553

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene02234.t1	AT1G64940	55.916	524	200	6	1	509	1	508	0.0	600
MS.gene02234.t1	AT1G64950	60.331	484	176	4	34	509	32	507	0.0	593
MS.gene02234.t1	AT2G12190	59.583	480	178	4	34	504	32	504	0.0	582
MS.gene02234.t1	AT1G64930	55.258	485	200	6	34	509	32	508	0.0	551
MS.gene02234.t1	AT1G64900	55.789	475	195	5	41	509	38	503	0.0	520
MS.gene02234.t1	AT3G03470	50.969	516	228	9	5	509	8	509	1.27e-180	517
MS.gene02234.t1	AT5G61320	53.452	507	208	6	1	504	1	482	5.82e-176	504
MS.gene02234.t1	AT5G04630	36.381	514	306	10	4	510	10	509	1.21e-116	353
MS.gene02234.t1	AT3G10560	37.843	510	298	11	5	510	19	513	2.11e-115	350
MS.gene02234.t1	AT5G04660	38.166	469	277	8	46	510	53	512	5.88e-114	347

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Find 120 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCCACACCAAATA+TGG	0.367736	2.1:-73100300	MS.gene02234:CDS
AAATTAACATTCCCACCTTC+TGG	0.390402	2.1:+73099043	None:intergenic
AACAAAATCCGAGTAACTTT+TGG	0.271397	2.1:+73099799	None:intergenic
AACATAGCATAGTTGAAGTG+TGG	0.653668	2.1:+73099943	None:intergenic
AACCACATAAACTATATCCT+AGG	0.532301	2.1:+73098962	None:intergenic
AAGATGATGCCATTTGGTGT+TGG	0.559007	2.1:-73099154	MS.gene02234:CDS
AAGCGGAGCTGATATTGTGT+TGG	0.618910	2.1:+73100133	None:intergenic
AATTCAATATAATAAATTTC+TGG	0.205731	2.1:-73099822	MS.gene02234:CDS
ACAAGCCTCCCTTGCACGTC+CGG	0.368027	2.1:+73099499	None:intergenic
ACATCCTCTGTCACTGCGTG+TGG	0.582336	2.1:+73099334	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAAGCTAAATTATATCC+AGG	+	chr2.1:73100341-73100360	None:intergenic	30.0%
ATGAAACGTTTGATATTACG+GGG	-	chr2.1:73100267-73100286	MS.gene02234:CDS	30.0%
GAAATTGAGTGAAGATGAAA+TGG	-	chr2.1:73099848-73099867	MS.gene02234:CDS	30.0%
GAGAAAGATTTGATCTTAGA+AGG	+	chr2.1:73099405-73099424	None:intergenic	30.0%
GATGAAACGTTTGATATTAC+GGG	-	chr2.1:73100266-73100285	MS.gene02234:CDS	30.0%
TTTCTCAGAAATTCGTAAGT+GGG	-	chr2.1:73099419-73099438	MS.gene02234:CDS	30.0%
AAATTAACATTCCCACCTTC+TGG	+	chr2.1:73100416-73100435	None:intergenic	35.0%
AACATAGCATAGTTGAAGTG+TGG	+	chr2.1:73099516-73099535	None:intergenic	35.0%
AGTGATGATAGGACCATATT+TGG	+	chr2.1:73099172-73099191	None:intergenic	35.0%
CATAGGATACTTGTGATGAT+GGG	+	chr2.1:73099099-73099118	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	73098973	73100505	73098973	ID=MS.gene02234
chr2.1	mRNA	73098973	73100505	73098973	ID=MS.gene02234.t1;Parent=MS.gene02234
chr2.1	exon	73098973	73100505	73098973	ID=MS.gene02234.t1.exon1;Parent=MS.gene02234.t1
chr2.1	CDS	73098973	73100505	73098973	ID=cds.MS.gene02234.t1;Parent=MS.gene02234.t1

Gene Sequence

>MS.gene02234

ATGGAAACATGGTTCATTGCACTTGCTTCTCTATGCATCATATTCCTCATCAAAGCCATCTTCTCCTCCCTCACCACCACCAACAAAACCACCGGAACCCTCCCTCCCGGTCCACCGCATATCCCCATCATCACAAGTATCCTATGGCTCCGAAAATCATCGTCCCAACTCGAACCTTTTATCAAAACCCTCCACACCAAATATGGTCCTATCATCACTCTCAAAATCAGTTCCCGACCTGCTATATTCATCTCTGACCATACTCTCGCCCACCATGCTCTCGTTCAAAACTCAGCCATCTTCTCCGATCGCCCTAGAGCTCTTCCTACCTCCAAAATCATCTCCAGCAACCAACACAATATCAGCTCCGCTTTTTATGGTGCAGCATGGCGTACCCTCCGTCGTAACCTCGCTTCTGAGATGCTTCATCCTTCTAAGATCAAATCTTTCTCAGAAATTCGTAAGTGGGTCCTACACACTCTCATCAACCGTCTCAAAACTGCATCAGAATCGGAACCAACGGATTCTATTAAAGTTATGCCACACTTCAACTATGCTATGTTCTGTTTACTTGTTTTCATGTGTTTTGGTGAAAGAGTTAACGATGAGAAAATTAATGATATTGAGCGCGTACAAAGGACAATTCTGTTGAGTGTTAACAAATTCAATATAATAAATTTCTGGCCAAAAGTTACTCGGATTTTGTTTCGCAAACGATGGGAAGAGTTGTTGAAGTTGCGAAAGGATCAAGAAGATGTTTTGCTTCCGCTGATTAGAGCGAGGAAGCAAGTTAAAGAGAGTAGATTGAACAATGTTAACCCTGTTGTTTCGTATGTGGATACTCTTTTGGAGTTGGAGTTGCCTGATGAGAAACGGAAATTGAGTGAAGATGAAATGGTTAGTCTTTGTTCAGAGTTTTTGAATGCTGGGATAGATACTACTTCCACGGCTTTGCAATGGATTATGGCGAATTTGGTGAAGTACCCGGACGTGCAAGGGAGGCTTGTGGACGAGATTAGGGATGTGATGGGTCGTGATGGAAATGGAGAGAAGGTGGAAGTGAAAGAGGAAGATTTGCAGAAACTTTTGTATCTGAAATGTGTGGTTTTGGAAGGGTTGAGGCGTCATCCACCGGGGCATAATGTGTTGCCACACGCAGTGACAGAGGATGTGCTTTTTAATGGCTATTTGGTGCCTAAAAATGGGACGGTGAATTTTATGGTGGCAGAGATGGGTTGGGATCCTCGTGTTTGGGAGGATCCAATGGAGTTTAAGCCAGAGAGGTTTTTGAAAGATGAAACGTTTGATATTACGGGGAGTAAAGAGATAAAGATGATGCCATTTGGTGTTGGAAGGAGAATTTGTCCTGGATATAATTTAGCTTTGCTTCACTTGGAATATTTTGTGGTTAATTTGGTTTGGAATTTCGATTGGAAGGTTCCAGAAGGTGGGAATGTTAATTTGTCGGAAAAACAAGAATTCACTGTGGTGATGAAAAATCCATTGCAAGTTCGTATTTCTCCTAGGATATAG

Protein sequence

>MS.gene02234.t1

METWFIALASLCIIFLIKAIFSSLTTTNKTTGTLPPGPPHIPIITSILWLRKSSSQLEPFIKTLHTKYGPIITLKISSRPAIFISDHTLAHHALVQNSAIFSDRPRALPTSKIISSNQHNISSAFYGAAWRTLRRNLASEMLHPSKIKSFSEIRKWVLHTLINRLKTASESEPTDSIKVMPHFNYAMFCLLVFMCFGERVNDEKINDIERVQRTILLSVNKFNIINFWPKVTRILFRKRWEELLKLRKDQEDVLLPLIRARKQVKESRLNNVNPVVSYVDTLLELELPDEKRKLSEDEMVSLCSEFLNAGIDTTSTALQWIMANLVKYPDVQGRLVDEIRDVMGRDGNGEKVEVKEEDLQKLLYLKCVVLEGLRRHPPGHNVLPHAVTEDVLFNGYLVPKNGTVNFMVAEMGWDPRVWEDPMEFKPERFLKDETFDITGSKEIKMMPFGVGRRICPGYNLALLHLEYFVVNLVWNFDWKVPEGGNVNLSEKQEFTVVMKNPLQVRISPRI