AlfalfaGEDB | MS.gene95984

M. sativa cultivar XinJiangDaYe / MS.gene95984

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95984.t1	QFS19027.1	93.4	518	34	0	1	518	1	518	7.60E-282	979.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95984.t1	Q2MJ19	65.0	515	178	2	3	517	7	519	2.4e-204	713.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95984.t1	A0A072VK12	93.4	518	34	0	1	518	1	518	7.1e-282	978.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055150	MS.gene95984	0.803191	3.92E-49	-1.69E-46
MS.gene060975	MS.gene95984	0.892897	1.04E-74	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000494	MS.gene95984	PPI
MS.gene000498	MS.gene95984	PPI
MS.gene001721	MS.gene95984	PPI
MS.gene002268	MS.gene95984	PPI
MS.gene002271	MS.gene95984	PPI
MS.gene002272	MS.gene95984	PPI
MS.gene002273	MS.gene95984	PPI
MS.gene005830	MS.gene95984	PPI
MS.gene006453	MS.gene95984	PPI
MS.gene006454	MS.gene95984	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95984.t1	MTR_2g072340	93.436	518	34	0	1	518	1	518	1001
MS.gene95984.t1	MTR_2g072400	84.496	516	80	0	1	516	1	516	918
MS.gene95984.t1	MTR_2g072380	87.452	518	40	1	1	518	1	493	888
MS.gene95984.t1	MTR_2g072250	72.157	510	141	1	8	517	7	515	782
MS.gene95984.t1	MTR_5g095230	70.980	510	147	1	8	517	7	515	776
MS.gene95984.t1	MTR_2g055470	65.049	515	178	2	3	517	7	519	728
MS.gene95984.t1	MTR_2g072260	72.144	499	138	1	19	517	15	512	725
MS.gene95984.t1	MTR_2g023680	64.410	517	182	2	1	517	5	519	712
MS.gene95984.t1	MTR_2g055430	63.760	516	185	2	2	517	6	519	712
MS.gene95984.t1	MTR_2g072380	92.918	353	25	0	166	518	1	353	689

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95984.t1	AT3G14690	58.027	517	207	4	1	516	5	512	640
MS.gene95984.t1	AT3G14690	58.027	517	207	4	1	516	40	547	639
MS.gene95984.t1	AT3G14680	60.484	496	189	3	22	516	23	512	633
MS.gene95984.t1	AT3G14610	60.800	500	188	4	19	516	19	512	631
MS.gene95984.t1	AT3G14660	58.065	496	201	2	22	516	23	512	614
MS.gene95984.t1	AT3G14640	58.635	498	197	3	22	516	45	536	609
MS.gene95984.t1	AT3G14640	58.635	498	197	3	22	516	23	514	609
MS.gene95984.t1	AT3G14650	57.863	496	202	2	22	516	23	512	608
MS.gene95984.t1	AT3G14630	55.078	512	222	3	7	516	58	563	604
MS.gene95984.t1	AT3G14630	55.078	512	222	3	7	516	3	508	603

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Find 105 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAGTAACCTGACAAG+TGG	0.603233	2.4:+23786996	None:intergenic
AAAGGCAGGTGAAGCAACAA+AGG	0.609309	2.4:-23786043	MS.gene95984:CDS
AAGAACCTCATTCAAAATCA+TGG	0.488281	2.4:+23785667	None:intergenic
AAGCTAGTAACCTGACAAGT+GGG	0.610314	2.4:+23786997	None:intergenic
AAGGGTAATTCCCGTAGCCG+GGG	0.630566	2.4:+23785310	None:intergenic
AAGGTAATTTGCACTCCGGC+AGG	0.524283	2.4:+23785572	None:intergenic
AAGTTTATATCCCTGGATGG+AGG	0.683994	2.4:-23786531	MS.gene95984:intron
AATACATCTTTAATTTGCTC+AGG	0.428901	2.4:+23787056	None:intergenic
AATTACCTTACCGGTAGTTT+TGG	0.334330	2.4:-23785558	MS.gene95984:CDS
AATTAGTCTCACCTCCATCC+AGG	0.469249	2.4:+23786520	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGTTAATGTCAATGGT+AGG	+	chr2.4:23788406-23788425	None:intergenic	30.0%
AAGAACCTCATTCAAAATCA+TGG	+	chr2.4:23788442-23788461	None:intergenic	30.0%
AATTCATTTGTTCCATTTGG+AGG	-	chr2.4:23788663-23788682	MS.gene95984:CDS	30.0%
AATTTCTTTCATTCTCCTAG+GGG	+	chr2.4:23787987-23788006	None:intergenic	30.0%
ACATACAGAAGAAATGACTT+TGG	-	chr2.4:23786877-23786896	MS.gene95984:intron	30.0%
ACCCTAAAAAATATGTCATG+TGG	-	chr2.4:23786276-23786295	MS.gene95984:intron	30.0%
AGAGTCAAATCACAAAGAAA+TGG	-	chr2.4:23788108-23788127	MS.gene95984:intron	30.0%
ATATCATCAGAAAGACTCAT+AGG	+	chr2.4:23785469-23785488	None:intergenic	30.0%
ATCGCAACTTCTTGAAATAT+AGG	-	chr2.4:23786557-23786576	MS.gene95984:CDS	30.0%
ATTATATGAGCACCATATTG+TGG	+	chr2.4:23788825-23788844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	23785262	23788866	23785262	ID=MS.gene95984
chr2.4	mRNA	23785262	23788866	23785262	ID=MS.gene95984.t1;Parent=MS.gene95984
chr2.4	exon	23788593	23788866	23788593	ID=MS.gene95984.t1.exon1;Parent=MS.gene95984.t1
chr2.4	CDS	23788593	23788866	23788593	ID=cds.MS.gene95984.t1;Parent=MS.gene95984.t1
chr2.4	exon	23786914	23787131	23786914	ID=MS.gene95984.t1.exon2;Parent=MS.gene95984.t1
chr2.4	CDS	23786914	23787131	23786914	ID=cds.MS.gene95984.t1;Parent=MS.gene95984.t1
chr2.4	exon	23786532	23786776	23786532	ID=MS.gene95984.t1.exon3;Parent=MS.gene95984.t1
chr2.4	CDS	23786532	23786776	23786532	ID=cds.MS.gene95984.t1;Parent=MS.gene95984.t1
chr2.4	exon	23785774	23786161	23785774	ID=MS.gene95984.t1.exon4;Parent=MS.gene95984.t1
chr2.4	CDS	23785774	23786161	23785774	ID=cds.MS.gene95984.t1;Parent=MS.gene95984.t1
chr2.4	exon	23785262	23785693	23785262	ID=MS.gene95984.t1.exon5;Parent=MS.gene95984.t1
chr2.4	CDS	23785262	23785693	23785262	ID=cds.MS.gene95984.t1;Parent=MS.gene95984.t1

Gene Sequence

>MS.gene95984

ATGGCTACAACTACAGCCATAATTCTCTTCACCTTGATGACATTTTCTCTCATATGGGCATGGAGAATTTTGAATTGGATATGGTTGAAGCCAAAAAAGCTAGAAAAGATGCTTAGAGAACAAGGACTTGAAGGAAATTCATATAGGCTTTTGGTTGGAGACATAAAGGATCTTCTTAAGATGAGAAAGGAAGCAACATCTAAACCTATGAGTCTTTCTGATGATATTGTGCCTCGTGTGTATCCCTTTGCCCAACAAAGTGTTGCAAAACATGGTATGTCCCTTTATAACAAACTCTCATCTTTATTAATTTAATCAGTTTTTCAAAGAAAAATCCCTTTAATACACGAGCTCCACCCCCTGTAGACTAATAGTGCCCCACTTATTAGGGGTTTGAGTAACTTGCATGATTTGATTTAAGGGTCGAAGGAATTGAAGATTCTAGGTTTAAACCCGAATGAAACAATAAATATTAATTTATAACTAATTGCTAATATTTATCATAAAAAATGATGCTCCACTTAATTATTTAGATATATTTACGTAATAAAGAGGGACAATAGATAACTAGTTTAGTGTCCTTCGATTGTACTTCCTCCGGTCTCTATTATAGGATAAAGTTCACTTTTTAGATTTATTCAATAACTGATGTTTTTAGTCCCTAATATATATAGATTAAATACATCATTTATTAGATAAACCTAAAAGCTAATTTTTTTCTTATAATAGAGATTGTAGTACTTGTTAGCAATAAAAAAAAACATTTTCTCAAGTTGTATCAAATTAGGAGAGAATTCACAATACCTAAATTAATAAAAACATTAGCTTCAAATGGGGAAATACTTCCATGACATAGTTTTGGTGCCATTGGTGCCATTGGGGAAATCCTGGCCATTGATGTGTGTGGATGTGTGTGTGTGTGATGTGTGTGTGTGTGGTGGAGATGCAAGCTATGGCACCAATGGCACCAAAGCTATGGCACCAAAGTGCTACTCCTTCAAATGTCATGTGGTCACCCTAAAAAATATGTCATGTGGGCAAAACAATTTTTTTATTTTATCATTCTTTATAGGTTTAATAGCAGTTTTGACCCCCTATACTTCAAGAAGTTGCGATTTTGGCCCCCTAACAAAATAAAATACAATACCGCCCCTAAGTATTGTCTCTTTTGCAGTTTTGTCCCCCAGGCAAATTTTGACCAATCAAACGTGTGTAATTTTTTTATTTTTTTTAATTAAAAAAATAATGCATAGATTTATAATGCATAGAATTAGACTTAGTCCTTAGATTTAAAAATCGCAACTTCTTGAAATATAGGGGGCCAAAACTGTTATTAAGCCATCTTTATAATGCATAGATTTAGACTTAGTCCTTAGATTAATCTCTTTATATTGCATAGATTTAGATAGGAGGGTTATGGAGGATCCAGTTGCACCTTGCGAGGAAGAGTTGCCAAACCATATTGCAGCCGTTGAGGATCCAAACACTGAGGATCATAACCATAGTTCATACTTATAGGACAATCATCAGAGTAATCTAACATTATTTTTCTTTTGGATGTAAAATCATCTCATTTTCCACTAAATGTATAGAGAATACTTCTCTTGCAGAGGGAACATACAGAAGAAATGACTTTGGATTATATCCTAATTCGTAACGAACTTCTTACCTATGACTCTGGTTATTCTCATCAATTCCTGATGGTTAATACTTTTTGCATATCTTTGGCATGCAGGAAAGAACTCTTTTATCTGGTTTGGACCAACACCAAGGGTGAACATAACAGATCCTGAGCAAATTAAAGATGTATTTAACAAAATTTACGACTTCCAAAAGCCTAATGCGAACCCACTTGTCAGGTTACTAGCTTTTGGTCTTGTAAGTCTTGAGGGAGAACAGTGGAGCCAGCACAGAAAGATAATCAATCCTGCATTTCATTTAGAAAAATTGAAGGCAAGTTTCCCTTGAGAACCCAATTGTGCTTATCTAGTCCGAAACATATAGTTTTGCAAGCATCACAAATTAGGTTTATAATAAAAAAAAACATGCTTTGAATTCTTAATCTAACACCTCTGTCTCTTACAAAACAGATCATGTTACCAATATTCCACAAAAGTTGTGATGATCTGATTCGCAAATGGGAGAGAATGTTGTCTTCAGATGGGTCATGTGAAATGGATGTATGGCCTTTCCTTCAAAATTTTGCCAGTGATGTTATTTCACGAGCAGCATTTGGAAGTAGTTATGAAGAGGGAAAAAGAATATTTCAACTTCAAACCGAACAAGCTGAACTTACAACAAAAATTATGGTGAAAGTTTATATCCCTGGATGGAGGTGAGACTAATTTTTATATTGCAAGTTAAATATGAAAATGCTTCATTTTGGATAAACTATTTAGAAATAAAAACCATCATTAAGAAACAGTTTGTTATATATTCTGTGCTGATTCATTATTGATCATTCTGATGGAAAGATAGTACAAACTAGAGTATGAAGACCAAAAGATACTATTTCAACACATTGTTAGACACACATGATAGTTTATACATGTACTTGTAAAAGAAACTAATATTTATAAATCGATGGTTTAGTATTACTTTTTTATACACTAAAGTTAGTTGCTCACTTTGGAGGAGTAAGATTCGTGAAATAACATTCCCTATATATCACATTAATTATGAGACTCATCATGTTTATTTTGAAGGTTTCTACCAACTACTACCCCTAGGAGAATGAAAGAAATTGAAAGAGACGTAAGAGCTTCGCTTACAGATATGATTAACAAGAGAGAGAGAGCACTAAAGGCAGGTGAAGCAACAAAGGATGATTTGTTAGGTATACTTTTAGAGTCAAATCACAAAGAAATGGAAGAACACGGCAACAATAAGAATGTTGGAATGAGTCTTGATGATGTAATAGAGGAATGCAAGCTATTCTACTTTGCAGGGCAAGAGACCACTTCTGTTTTGCTTGTTTGGACAATGGTGTTGTTGAGTAGGTACCCTGATTGGCAAGCACGTGCAAGGGAGGAAGTATTACAAGTATTTGGCAACAATAAACCCGATTTTGACGAGCTAAGTCATCTTAAGATTGTAAGTACTGTGTTCTTCCCTTCATATTAAAGAATATATGCCTTGATACCTACCATTGACATTAACCTTTTTTGAGACAGGTCACCATGATTTTGAATGAGGTTCTTAGGTTATACCCACCAGTAATCGAACTTGCTCGAAGTGTTCACAAAGATGTGAAACTTGGAAACCTAACATTACCTGCCGGAGTGCAAATTACCTTACCGGTAGTTTTGGTTCACCATGACATAGAACTATGGGGTGAAGATGCTAAGGTGTTCAATCCTGAGAGATTTTCTGAAGGTGTTTTGAAAGCAACAAATGGAAGAAATTCATTTGTTCCATTTGGAGGGGGTCCTAGAATTTGCATTGGACAGAACTTTTCTATGTTGGAAGCAAAGATGGCAATAGCAATGATTTTACAACGTTTCTCATTTGAACTTTCTCCATCTTATGCTCATGCCCCGGCTACGGGAATTACCCTTCAACCACAATATGGTGCTCATATAATTCTACGTAAAGTGGAATTGTAA

Protein sequence

>MS.gene95984.t1

MATTTAIILFTLMTFSLIWAWRILNWIWLKPKKLEKMLREQGLEGNSYRLLVGDIKDLLKMRKEATSKPMSLSDDIVPRVYPFAQQSVAKHGKNSFIWFGPTPRVNITDPEQIKDVFNKIYDFQKPNANPLVRLLAFGLVSLEGEQWSQHRKIINPAFHLEKLKIMLPIFHKSCDDLIRKWERMLSSDGSCEMDVWPFLQNFASDVISRAAFGSSYEEGKRIFQLQTEQAELTTKIMVKVYIPGWRFLPTTTPRRMKEIERDVRASLTDMINKRERALKAGEATKDDLLGILLESNHKEMEEHGNNKNVGMSLDDVIEECKLFYFAGQETTSVLLVWTMVLLSRYPDWQARAREEVLQVFGNNKPDFDELSHLKIVTMILNEVLRLYPPVIELARSVHKDVKLGNLTLPAGVQITLPVVLVHHDIELWGEDAKVFNPERFSEGVLKATNGRNSFVPFGGGPRICIGQNFSMLEAKMAIAMILQRFSFELSPSYAHAPATGITLQPQYGAHIILRKVEL