AlfalfaGEDB | MS.gene065902

M. sativa cultivar XinJiangDaYe / MS.gene065902

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065902.t1	RHN61740.1	87.6	491	50	1	1	480	1	491	5.60E-239	836.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065902.t1	Q8VWZ7	53.0	494	209	5	1	480	1	485	1.8e-140	500.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065902.t1	A0A396I806	87.6	491	50	1	1	480	1	491	4.1e-239	836.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006454	MS.gene065902	PPI
MS.gene00811	MS.gene065902	PPI
MS.gene011756	MS.gene065902	PPI
MS.gene01255	MS.gene065902	PPI
MS.gene016298	MS.gene065902	PPI
MS.gene019382	MS.gene065902	PPI
MS.gene02226	MS.gene065902	PPI
MS.gene02231	MS.gene065902	PPI
MS.gene02232	MS.gene065902	PPI
MS.gene024791	MS.gene065902	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene065902.t1	MTR_4g078110	84.091	484	51	2	8	480	1	469	802
MS.gene065902.t1	MTR_1g103670	60.248	483	177	3	9	480	11	489	595
MS.gene065902.t1	MTR_1g031700	59.091	484	183	3	8	480	10	489	590
MS.gene065902.t1	MTR_8g046240	56.426	498	199	3	1	480	1	498	581
MS.gene065902.t1	MTR_1g103680	60.896	491	180	2	1	480	1	490	571
MS.gene065902.t1	MTR_8g046210	58.776	490	182	4	11	480	9	498	561
MS.gene065902.t1	MTR_1g037370	60.480	458	169	2	34	480	30	486	561
MS.gene065902.t1	MTR_5g007460	56.624	468	188	3	27	479	1	468	549
MS.gene065902.t1	MTR_5g007450	53.768	491	204	5	1	479	10	489	544
MS.gene065902.t1	MTR_2g073420	56.596	470	188	3	3	459	13	479	541

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065902.t1	AT1G33720	45.621	491	249	5	7	480	10	499	4.58e-154	448
MS.gene065902.t1	AT3G61040	47.072	461	226	4	34	480	32	488	2.59e-150	438
MS.gene065902.t1	AT2G45550	44.064	497	257	6	1	477	1	496	3.16e-150	438
MS.gene065902.t1	AT2G45560	44.646	495	251	7	4	480	10	499	1.61e-149	436
MS.gene065902.t1	AT2G45580	44.592	453	232	4	45	479	48	499	6.62e-143	420
MS.gene065902.t1	AT2G45570	46.035	454	226	6	45	480	48	500	9.08e-143	419
MS.gene065902.t1	AT1G33720	47.684	367	175	4	130	480	2	367	1.04e-116	348
MS.gene065902.t1	AT1G33720	47.684	367	175	4	130	480	2	367	1.04e-116	348
MS.gene065902.t1	AT1G33720	47.684	367	175	4	130	480	2	367	1.04e-116	348
MS.gene065902.t1	AT3G61040	45.902	366	191	3	34	396	32	393	1.61e-112	338

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Find 102 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGAGAAGTAGGTCC+TGG	0.570444	4.1:+27054275	None:intergenic
AAAGTACCAGAGATAAATGT+TGG	0.481124	4.1:+27053505	None:intergenic
AAGACTCTTGATGAGAGTAA+GGG	0.575607	4.1:-27053960	MS.gene065902:CDS
AAGTCAATACCAATAGAGAA+AGG	0.550968	4.1:+27054354	None:intergenic
AATAGAAGATATCAACATGG+AGG	0.700716	4.1:-27051575	MS.gene065902:CDS
AATGCAAATGTGGAGATTTG+TGG	0.533003	4.1:-27051861	MS.gene065902:CDS
AATTTCAGCTAATTTGGCTA+CGG	0.514200	4.1:+27054211	None:intergenic
AATTTCATCTACGCTAGAAT+GGG	0.514797	4.1:-27052069	MS.gene065902:CDS
AATTTGGCTACGGATTTGTG+AGG	0.659270	4.1:+27054221	None:intergenic
ACAAATCTCCACATTTGCAT+TGG	0.504633	4.1:+27051863	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTAGCAAGTATTCCAT+CGG	+	chr4.1:27051540-27051559	None:intergenic	30.0%
AAGTCAATACCAATAGAGAA+AGG	+	chr4.1:27051572-27051591	None:intergenic	30.0%
AATAGAAGATATCAACATGG+AGG	-	chr4.1:27054348-27054367	MS.gene065902:CDS	30.0%
AATCAATCATCTCATAGATG+AGG	-	chr4.1:27053450-27053469	MS.gene065902:intron	30.0%
AATTTCAGCTAATTTGGCTA+CGG	+	chr4.1:27051715-27051734	None:intergenic	30.0%
AATTTCATCTACGCTAGAAT+GGG	-	chr4.1:27053854-27053873	MS.gene065902:CDS	30.0%
AGATCGGAAATTGATGTTAA+AGG	-	chr4.1:27054190-27054209	MS.gene065902:CDS	30.0%
AGCTGTTGATATTGGAAATA+TGG	-	chr4.1:27052049-27052068	MS.gene065902:CDS	30.0%
AGTGCATATTTAATCACGAT+GGG	-	chr4.1:27053148-27053167	MS.gene065902:intron	30.0%
ATAAGAATTGATCATGGGTT+TGG	+	chr4.1:27051818-27051837	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	27051540	27054405	27051540	ID=MS.gene065902
chr4.1	mRNA	27051540	27054405	27051540	ID=MS.gene065902.t1;Parent=MS.gene065902
chr4.1	exon	27053512	27054405	27053512	ID=MS.gene065902.t1.exon1;Parent=MS.gene065902.t1
chr4.1	CDS	27053512	27054405	27053512	ID=cds.MS.gene065902.t1;Parent=MS.gene065902.t1
chr4.1	exon	27051797	27052117	27051797	ID=MS.gene065902.t1.exon2;Parent=MS.gene065902.t1
chr4.1	CDS	27051797	27052117	27051797	ID=cds.MS.gene065902.t1;Parent=MS.gene065902.t1
chr4.1	exon	27051540	27051764	27051540	ID=MS.gene065902.t1.exon3;Parent=MS.gene065902.t1
chr4.1	CDS	27051540	27051764	27051540	ID=cds.MS.gene065902.t1;Parent=MS.gene065902.t1

Gene Sequence

>MS.gene065902

ATGGAATACTTGCTAAGTTTCATGCTCCTCCTTTCTCTATTGGTATTGACTTTCTATTTTCTGCTTTCAAGAGCAAAACTCACAAACAATTCAAACATCAAGCTCCCACCAGGACCTACTTCTCTTCCTTTCATAGGAAACCTCCTTCAATTAGGAGAAAAGCCTCACAAATCCGTAGCCAAATTAGCTGAAATTTATGGCCCAATCATGAGTCTAAAGCTAGGTCAAATAACCACCATAGTTGCCTCTTCACCTAACATGGCCAAAGAAATACTCCAAACCCATGATCAATTCTTATCAAATAGAGTCATTTCCAATGCTGCACAAGTTCATGATCACCACAAATATAGTATGACATTCTTACCCGTTTCACCTCGTTGGAGGGACTTGAGAAAAATCTGCAATAACCAACTATTCTCTAACAAGACTCTTGATGAGAGTAAGGGGATTAGGAGTCAGAAACTGCAAGAATTGGTCAATGATATTAATCAAAGTAGTCTTATTAATGAAGCTGTTGATATTGGAAATATGGCTTTTAAGACATCAATTAATTTGTTGTCAAACACTATTTTCTCTTTAGATTTGGTTGACTCTTCTGGTTCAGTTGATGAATTCAAGGAGCTAGTTGTGAATATAATGGAAGAAAGTGGAAAACCAAACATTGCTGATTTTTTTCCTGCACTTAGGATGTTTGACCCACAAGGTATTAAAGGTCGCACCTCTGTTTGTGCTGGCAAAATCCTTGATATCTTCGAACGTTTGGTTGATCAACGGTTGAAGTTGAGGAAAGTAAAAGATTTTGACACAAATAATGACATGCTAAATACCTTTCTAAACATTGATCAAGCCAACACCCAAGTGATGAACAAAAACCAAATCCAACATTTATCTCTGGTACTTTCTTGTCTTTTTCCAGTTAAACTAGTTAAATAGTATATGTATATGCTGTGTTTGTCCTTTGTTATTTTGATTTTTTTTTTAGTAAATTACATCCTCTCATTTCAAAGAATCTTCACTTCCCTATCTCGTATGTTAAAATATACACTTTACACTCAATAATTTTTGTTTTTTCAATTTCTAATAATCTAGAAAAAAATCTAACAGACTTCGAAGAAAAATAATATTGCGGGTCCATTTTAACATAATCAAAATTTGAAAACATATTTTTCTCTTTTTTTATTCATAATTTCATTAACATGTTGTTTTAAACCCAATTATAAAATATGAGACAACCCAAAATAAAATTAAAATATGTGAAAAATTACTAAAGTCGATTAAGTATGGTTATTTAAAAGTGAATTTTATACTCCAGGTTATAAAATTAATAACAAAATGTTTAAATTTAATTATCATTGACATTTAAATTATAAAAAAATTAATTTAGTATTCTTAAATGGTGGAGGGTGTTATAAAAATATATTATAAAAAATATTTATTTATTTATGTTAAAATAGATTAAAGTGTAGTGCATATTTAATTATTATGGGAGGGTGTCCAAAATTTAATTATCATTGACCTTTAACCCAAAATAATTTGAATACATGGTGTTATAAAAATATATTATAAAAATATTTATTTATTTATTTATGTTAAAATAGATTAAAGTGTAGTGCATATTTAATCACGATGGGAGGGTGTCCAAAATTTAATTATCATTGACCTTTAACCCAAAATAATTTGAATACATGGTGTTATAAAAATATATTATAAAAATATTTATTTATGTTAAAATAGATTAAAGTGTAGTGCATATTTAATTACTATGGGAGGGTGTCCAAAATTTAATTATCATTGACCTTTAACCCAAAATAATTTGAATACACATTATAGTAAATATTATAAAAATATTTATTTATGTTAAAATAGATTAAAGTGTAGTGCATATTTAATTATTATGAGAGGGTGTTGTAAATCAATCATCTCATAGATGAGGAGAGTATAAATTTTACTTTTCAAGGGACGGATGTGTATATTTTATCATAAAAGGGGAAAAAAGTGTAATTTAAGCTTCTTTTAAGGGAGAATAGTGCAATTTACTTTTATTTTTTTAACTAATTCATTTAGAAGCGGGTTACTTATTTATTTGATTAAAAAAAAGATCTACATCGTGCACATTCAATGCTTTGGTGCCACTTGCCAACGTTATATTCATTAAATGATATGAAAACATATCATCGATTCAGATGTATATGTAAAATATTTGTATTTTTATACTAACATTACATATAAATGTCGTCGATTTTGATAGCGTATGATGATTGAGTGAATGAGTGTTTTTAATTTATCAGACTTTCTTTGTTGCGGGTACCGATACAATTTCATCTACGCTAGAATGGGCAATGGCAGAATTGCTAAAAAATGAAAAGATTATGTCAAAAGCAAAACAAGAGCTGGAACAAATAATTGGCAAAGGAAAAACTTTAGATGAATCTGATATTGCTAAGCTTCCTTATTTACAAGCAGTAATAAAAGAGACATTCCGATTGCACCCTCCAGTTCCATTCTTAATCCCTCGAAAAGCCAATGCAAATGTGGAGATTTGTGGATACACAATCCCAAAAGATGCACAAGTGTGGGTCAATGTGTGGGCTATTGGTAGAAATTCTAGTGTTTGGAAAATGCAAATTTGTTTTCACCTGAGAGATTCTTAAGATCGGAAATTGATGTTAAAGGTCACAATTTTGAGCTTACACCATTTGGTGCTGGGAGGCGAATTTGTCCTGGTTTAACGTTAGCGATGAGGATGTTGCATTTGATGTTGGGTTCATTAATCAATTGTTTTAACTGGAAATTGGAAGATGGAATCAAAATAGAAGATATCAACATGGAGGACAAGTTTGGAATAGCATTAGCAAAGGCTCAGCCG

Protein sequence

>MS.gene065902.t1

MEYLLSFMLLLSLLVLTFYFLLSRAKLTNNSNIKLPPGPTSLPFIGNLLQLGEKPHKSVAKLAEIYGPIMSLKLGQITTIVASSPNMAKEILQTHDQFLSNRVISNAAQVHDHHKYSMTFLPVSPRWRDLRKICNNQLFSNKTLDESKGIRSQKLQELVNDINQSSLINEAVDIGNMAFKTSINLLSNTIFSLDLVDSSGSVDEFKELVVNIMEESGKPNIADFFPALRMFDPQGIKGRTSVCAGKILDIFERLVDQRLKLRKVKDFDTNNDMLNTFLNIDQANTQVMNKNQIQHLSLTFFVAGTDTISSTLEWAMAELLKNEKIMSKAKQELEQIIGKGKTLDESDIAKLPYLQAVIKETFRLHPPVPFLIPRKANANVEICGYTIPKDAQVWVNVWAIGRNSSRFLRSEIDVKGHNFELTPFGAGRRICPGLTLAMRMLHLMLGSLINCFNWKLEDGIKIEDINMEDKFGIALAKAQP