AlfalfaGEDB | MS.gene08407

M. sativa cultivar XinJiangDaYe / MS.gene08407

KEGG: K13260
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08407.t1	XP_013457402.1	97.2	498	14	0	1	498	1	498	1.20E-281	978.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08407.t1	Q6WNR0	97.2	498	14	0	1	498	1	498	3.0e-284	978.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08407.t1	A0A396IGN9	97.2	498	14	0	1	498	1	498	9.0e-282	978.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene08407	-0.817059	4.01E-52	-1.69E-46
MS.gene049222	MS.gene08407	-0.802049	6.75E-49	-1.69E-46
MS.gene049259	MS.gene08407	0.817232	3.67E-52	-1.69E-46
MS.gene049265	MS.gene08407	0.804324	2.28E-49	-1.69E-46
MS.gene049285	MS.gene08407	-0.80892	2.44E-50	-1.69E-46
MS.gene04932	MS.gene08407	0.826381	2.80E-54	-1.69E-46
MS.gene049320	MS.gene08407	-0.828504	8.66E-55	-1.69E-46
MS.gene049402	MS.gene08407	0.803265	3.79E-49	-1.69E-46
MS.gene049549	MS.gene08407	0.802261	6.10E-49	-1.69E-46
MS.gene049611	MS.gene08407	0.834701	2.57E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000494	MS.gene08407	PPI
MS.gene000498	MS.gene08407	PPI
MS.gene001721	MS.gene08407	PPI
MS.gene002268	MS.gene08407	PPI
MS.gene002271	MS.gene08407	PPI
MS.gene002272	MS.gene08407	PPI
MS.gene002273	MS.gene08407	PPI
MS.gene002745	MS.gene08407	PPI
MS.gene004434	MS.gene08407	PPI
MS.gene005830	MS.gene08407	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08407.t1	MTR_4g094775	97.189	498	14	0	1	498	1	498	0.0	1011
MS.gene08407.t1	MTR_5g016410	61.031	485	186	2	7	490	8	490	0.0	650
MS.gene08407.t1	MTR_2g437840	59.553	492	197	2	7	496	5	496	0.0	625
MS.gene08407.t1	MTR_4g095050	58.215	493	200	3	11	497	10	502	0.0	603
MS.gene08407.t1	MTR_2g437880	60.479	501	186	3	10	498	3	503	0.0	599
MS.gene08407.t1	MTR_4g094772	56.341	481	197	3	20	498	21	490	0.0	595
MS.gene08407.t1	MTR_4g035330	56.198	484	199	3	17	498	15	487	0.0	583
MS.gene08407.t1	MTR_5g016440	51.815	496	231	3	5	497	4	494	0.0	549
MS.gene08407.t1	MTR_4g077210	44.885	479	252	5	28	497	31	506	2.37e-142	419
MS.gene08407.t1	MTR_8g020950	36.059	477	281	9	31	490	37	506	1.25e-103	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08407.t1	AT4G37370	51.619	494	230	6	7	497	6	493	0.0	545
MS.gene08407.t1	AT4G37330	52.811	498	219	6	3	497	8	492	0.0	543
MS.gene08407.t1	AT4G37340	51.411	496	231	7	7	497	6	496	0.0	537
MS.gene08407.t1	AT4G37320	49.800	500	243	5	1	497	1	495	0.0	525
MS.gene08407.t1	AT5G36220	49.197	498	241	6	7	497	9	501	0.0	518
MS.gene08407.t1	AT3G28740	53.503	471	211	5	31	497	38	504	1.04e-179	514
MS.gene08407.t1	AT5G57220	50.103	487	234	7	14	497	10	490	5.77e-179	511
MS.gene08407.t1	AT4G37360	50.607	494	233	6	11	497	6	495	7.93e-179	511
MS.gene08407.t1	AT2G23190	48.988	494	241	7	6	494	49	536	1.99e-176	507
MS.gene08407.t1	AT4G37430	49.109	505	241	9	3	497	1	499	4.01e-176	504

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Find 115 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGTGGCCTATTTGCT+AGG	0.573811	4.1:+17684472	None:intergenic
AAAATATAGAAAGATAAAAG+AGG	0.537938	4.1:+17684727	None:intergenic
AAAATGATTGCATTTGGAAT+GGG	0.475176	4.1:-17682731	MS.gene08407:CDS
AAACCTCTCTGGCTTGAAAG+TGG	0.587051	4.1:+17682775	None:intergenic
AAAGAGGGAGTAGCACAAAT+AGG	0.395341	4.1:+17684743	None:intergenic
AAAGTCAAGAAACTTAAGCA+AGG	0.571897	4.1:+17684068	None:intergenic
AAATATAGAAAGATAAAAGA+GGG	0.531078	4.1:+17684728	None:intergenic
AACATCATGAGAATGATCTC+TGG	0.487710	4.1:-17684210	MS.gene08407:CDS
AACGTGATTTCCCTTTGGTT+TGG	0.410174	4.1:-17684564	MS.gene08407:CDS
AACTAGAGATGAGTGTGTTA+TGG	0.361920	4.1:-17682882	MS.gene08407:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGATGTCTTCTTGAG+TGG	-	chr4.1:17683276-17683295	MS.gene08407:intron	30.0%
AAAAGGATGATGTGACAAAA+TGG	+	chr4.1:17683989-17684008	None:intergenic	30.0%
AAAGTCAAGAAACTTAAGCA+AGG	+	chr4.1:17683220-17683239	None:intergenic	30.0%
AAGTCAAGAAACTTAAGCAA+GGG	+	chr4.1:17683219-17683238	None:intergenic	30.0%
GAAAATGATTGCATTTGGAA+TGG	-	chr4.1:17684553-17684572	MS.gene08407:CDS	30.0%
TCAAGAAGCAAGTCAATTTA+GGG	-	chr4.1:17683137-17683156	MS.gene08407:intron	30.0%
TTCAAGAAGCAAGTCAATTT+AGG	-	chr4.1:17683136-17683155	MS.gene08407:intron	30.0%
TTCTACTTCAGCAAATTTAG+TGG	+	chr4.1:17683022-17683041	None:intergenic	30.0%
TTGAAAACATTGTTGACGAT+CGG	+	chr4.1:17684755-17684774	None:intergenic	30.0%
TTGGAGAAAATGATTGCATT+TGG	-	chr4.1:17684548-17684567	MS.gene08407:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	17682529	17684778	17682529	ID=MS.gene08407
chr4.1	mRNA	17682529	17684778	17682529	ID=MS.gene08407.t1;Parent=MS.gene08407
chr4.1	exon	17683888	17684778	17683888	ID=MS.gene08407.t1.exon1;Parent=MS.gene08407.t1
chr4.1	CDS	17683888	17684778	17683888	ID=cds.MS.gene08407.t1;Parent=MS.gene08407.t1
chr4.1	exon	17682529	17683134	17682529	ID=MS.gene08407.t1.exon2;Parent=MS.gene08407.t1
chr4.1	CDS	17682529	17683134	17682529	ID=cds.MS.gene08407.t1;Parent=MS.gene08407.t1

Gene Sequence

>MS.gene08407

ATGGGGATCCTTTCCTATTTGTGCTACTCCCTCTTTTATCTTTCTATATTTTTCATCTTTAGGCTTTTGTTCCAATCAAGAAAATTCAAAAACCTTCCACCAGGTCCAACTTCTCTTCCCATAATTGGTAACCTTCACCATCTCAAACGTCCCTTAAACCGTACCTTTAAGGGACTCTCTGAAAAGTATGGTAACGTGATTTCCCTTTGGTTTGGTTCACGTCTTGTTGTCGTTGTTTCTTCTCTATCCGAATTTCAAGAATGTTTTACAAAAAACGACGTTGTCCTAGCAAATAGGCCACGCTTTTTATCCGGAAAATACATTTTCTACAATTATACCACTTTAGGATCAACCTCCTACGGTGAACACTGGCGTAACCTTCGTCGTATCACTTCCCTCGATGTCCTTTCAAACCACCGTATCAACAACTTCGCTCCTATCCGAAGGGACGAGACTCAGAGGTTGATCAAGAAGTTGGCTGAAGATTCATCCACTAAATTTGCTGAAGTAGAACTCACTTCCAGGTTTTTCGATATGACTTTCAACAACATCATGAGAATGATCTCTGGAAAGAGGTACTATGGTGATGATTGTGACATATCTGAGGTTCAAGAAGCAAGTCAATTTAGGGACATGGTATCTGAACTGTTGCAGTTATCAGGTGCAAACAATAAGACTGATTTCATGCCCTTGCTTAAGTTTCTTGACTTTGAAAACTTGGAGAAGAGAGTCAAGCGTATTGGTGAAAAAAATGATGTCTTCTTGAGTGGACTCCTTCAAGAGCAACGTAACAAGAAAGAACGTTCAAATACCATGATAGATCATCTTCTAAATATGCAAGAATCACAGCCAGAGTACTACACCGATGTAATCATCAAAGGCCTTTGTTTGGTAAGTACATAATAATTGTTTATATTGTACATATTCTAGTTATCTAACCAAGGATGTCAAAAACAAAATTTTAGTAAAATTGCAATCAAAATCATTGGATTCTACCGATACAAAAATAACGCTAAATATTTGTTATAAATTGCATATGGTCCTAAATGAATCAAAGTTTCAAGTCCACAAATACTTATACATAAATGACTCAGAACCTAGATACCAGAAACCTGCGATTTTATGCGAATCGAGTCAAAATTGACATGTAATTTTTTTTGCATAATCCTTCAAAATCCTGTGATTTTGCAGGGATTTCACGATTTTATGCAATTTCGATGGGATTTTAGTAGGATTTTGCTTGTTTTTTTAATTCTGTAACGGACTTGGATCCATGAAGATGAGTGAAGTCGCGAAATCCTGAATTTTGAAATTTAAATCGCGATTTTGACAATAATATATCTAACCTTAGCTTAATCTTATTTTACACATATACATATATAACTATATTGTTAAAGATTTAAGAGATATATATTGTCAATGTAATAAAGTTTTACATTTACATTCAATGAAAACTACCATTTTGTCACATCATCCTTTTGTTAAGGTACTTTAAAATTAGTGGTGATGACATGGAAAAAGGTGGTATCTCATTAGATATCAGTGTACAACTATTTTACACATATGTTATATGTCCGGTATTAAACTGTATTATTAATATGTTTTATTTAAAATAAAATTGATTGAATTTGGTTGAAATTTTAGGCCATGCTCCTTGCTGGAACAGACTCATCTGCCGTAACATTAGAGTGGAGCATGTCAAATATTTTGAACTATCCAGAGGTGTTGAAAAGGGTAAGAGATGAAGTGGATACTCATGTAGGACAAGATCGTTTGGTAGATGAATCAGACCTTCCCAAACTCACTTACCTTAGAAATGTCATCTACGAGACCCTTCGATTATATACTCCTGCTCCATTGTTATTACCACACTCAACTAGAGATGAGTGTGTTATGGGAGGATACAAAGTTCCGCGCGACACCATAGTATTGATCAATGCTTGGGCCATTCATAGAGACCCAGAAACATGGAGTGAAGCCACCACTTTCAAGCCAGAGAGGTTTGACAAAAAAGGAGAGTTGGAGAAAATGATTGCATTTGGAATGGGAAGAAGGGCATGTCCAGGAGAAGGTTTAGCTCTTCGAGCAATTAGCATGACTTTGGCATTATTGGTTCAATGCTTTGATTGGAAACGTATAAACGATGAAAAAATTGATATGTCAGAACGAGATGGATTCACTATGACAAAGTTAGTACCATTGAAGGCCATGTGTAAGACTCGCCCGATCGTCAACAATGTTTTCAAGTGA

Protein sequence

>MS.gene08407.t1

MGILSYLCYSLFYLSIFFIFRLLFQSRKFKNLPPGPTSLPIIGNLHHLKRPLNRTFKGLSEKYGNVISLWFGSRLVVVVSSLSEFQECFTKNDVVLANRPRFLSGKYIFYNYTTLGSTSYGEHWRNLRRITSLDVLSNHRINNFAPIRRDETQRLIKKLAEDSSTKFAEVELTSRFFDMTFNNIMRMISGKRYYGDDCDISEVQEASQFRDMVSELLQLSGANNKTDFMPLLKFLDFENLEKRVKRIGEKNDVFLSGLLQEQRNKKERSNTMIDHLLNMQESQPEYYTDVIIKGLCLAMLLAGTDSSAVTLEWSMSNILNYPEVLKRVRDEVDTHVGQDRLVDESDLPKLTYLRNVIYETLRLYTPAPLLLPHSTRDECVMGGYKVPRDTIVLINAWAIHRDPETWSEATTFKPERFDKKGELEKMIAFGMGRRACPGEGLALRAISMTLALLVQCFDWKRINDEKIDMSERDGFTMTKLVPLKAMCKTRPIVNNVFK