AlfalfaGEDB | MS.gene95986

M. sativa cultivar XinJiangDaYe / MS.gene95986

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95986.t1	XP_013464445.2	95.2	518	20	1	1	513	1	518	2.00E-290	1007.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95986.t1	Q2MJ19	62.5	512	184	3	8	512	9	519	8.6e-194	677.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95986.t1	A0A396JDQ8	95.2	518	20	1	1	513	1	518	1.4e-290	1007.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006454	MS.gene95986	PPI
MS.gene00811	MS.gene95986	PPI
MS.gene02226	MS.gene95986	PPI
MS.gene026317	MS.gene95986	PPI
MS.gene026562	MS.gene95986	PPI
MS.gene034713	MS.gene95986	PPI
MS.gene036057	MS.gene95986	PPI
MS.gene044589	MS.gene95986	PPI
MS.gene048829	MS.gene95986	PPI
MS.gene060977	MS.gene95986	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95986.t1	MTR_2g072340	74.324	518	128	1	1	513	1	518	814
MS.gene95986.t1	MTR_2g072400	72.481	516	137	1	1	511	1	516	803
MS.gene95986.t1	MTR_2g072380	71.344	506	115	2	13	513	13	493	738
MS.gene95986.t1	MTR_2g072250	67.057	513	161	3	7	512	4	515	731
MS.gene95986.t1	MTR_5g095230	66.864	507	162	2	11	512	10	515	717
MS.gene95986.t1	MTR_2g072260	69.339	499	147	2	19	512	15	512	706
MS.gene95986.t1	MTR_2g023680	62.308	520	187	3	1	512	1	519	688
MS.gene95986.t1	MTR_2g055470	62.500	512	184	3	8	512	9	519	688
MS.gene95986.t1	MTR_2g055430	62.305	512	185	3	8	512	9	519	683
MS.gene95986.t1	MTR_2g072270	57.443	524	208	6	1	511	2	523	627

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene95986.t1	AT3G14690	56.893	515	210	3	3	511	4	512	632
MS.gene95986.t1	AT3G14690	56.893	515	210	3	3	511	39	547	631
MS.gene95986.t1	AT3G14680	57.661	496	198	3	22	511	23	512	607
MS.gene95986.t1	AT3G14660	57.143	490	198	3	28	511	29	512	598
MS.gene95986.t1	AT3G14640	57.831	498	196	4	22	511	23	514	597
MS.gene95986.t1	AT3G14640	57.831	498	196	4	22	511	45	536	596
MS.gene95986.t1	AT3G14650	55.847	496	207	3	22	511	23	512	588
MS.gene95986.t1	AT3G14610	56.000	500	207	4	19	511	19	512	588
MS.gene95986.t1	AT3G14630	53.229	511	227	3	7	511	59	563	574
MS.gene95986.t1	AT3G14630	53.229	511	227	3	7	511	4	508	573

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Find 116 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTTTAACTAACTC+AGG	0.463592	2.4:+23750361	None:intergenic
AAAGGTTGAAGGAAATTAAC+AGG	0.314050	2.4:-23748540	MS.gene95986:CDS
AACAACAACAATAAGAATGT+TGG	0.503304	2.4:-23748394	MS.gene95986:CDS
AACTAACTCAGGATCTGTGA+TGG	0.612292	2.4:+23750372	None:intergenic
AAGGTAATCTGAACTCCGGC+CGG	0.605366	2.4:+23747529	None:intergenic
AAGGTTGAAGGAAATTAACA+GGG	0.705737	2.4:-23748539	MS.gene95986:CDS
AAGTGGTTTCTTCCCCTGCA+AGG	0.575724	2.4:+23748329	None:intergenic
AAGTTTACATCCCTGGTTGG+AGG	0.591964	2.4:-23749250	MS.gene95986:intron
AATCCATATAGGTTTGTAGT+TGG	0.461620	2.4:-23752387	MS.gene95986:CDS
AATCCTGAGAGATTTGCAGA+AGG	0.663477	2.4:-23747448	MS.gene95986:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACTCAAACACACTAT+TGG	+	chr2.4:23748450-23748469	None:intergenic	30.0%
AAAGGTTGAAGGAAATTAAC+AGG	-	chr2.4:23751201-23751220	MS.gene95986:intron	30.0%
AAATATTAACCGATGCTTAC+GGG	+	chr2.4:23750170-23750189	None:intergenic	30.0%
AAGAACTCAAACACACTATT+GGG	+	chr2.4:23748449-23748468	None:intergenic	30.0%
AAGGTTGAAGGAAATTAACA+GGG	-	chr2.4:23751202-23751221	MS.gene95986:intron	30.0%
AATAATACTCCCTTCGTAAT+GGG	-	chr2.4:23748604-23748623	MS.gene95986:intron	30.0%
AATCCATATAGGTTTGTAGT+TGG	-	chr2.4:23747354-23747373	MS.gene95986:CDS	30.0%
ACCTAATAAGTCATTCTTAG+TGG	+	chr2.4:23751291-23751310	None:intergenic	30.0%
AGATTACCTTACCAATAGTT+TGG	-	chr2.4:23752225-23752244	MS.gene95986:intron	30.0%
CAACATGAATTAACTTACAC+CGG	-	chr2.4:23748300-23748319	MS.gene95986:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	23747219	23752544	23747219	ID=MS.gene95986
chr2.4	mRNA	23747219	23752544	23747219	ID=MS.gene95986.t1;Parent=MS.gene95986
chr2.4	exon	23752286	23752544	23752286	ID=MS.gene95986.t1.exon1;Parent=MS.gene95986.t1
chr2.4	CDS	23752286	23752544	23752286	ID=cds.MS.gene95986.t1;Parent=MS.gene95986.t1
chr2.4	exon	23750219	23750436	23750219	ID=MS.gene95986.t1.exon2;Parent=MS.gene95986.t1
chr2.4	CDS	23750219	23750436	23750219	ID=cds.MS.gene95986.t1;Parent=MS.gene95986.t1
chr2.4	exon	23749251	23749495	23749251	ID=MS.gene95986.t1.exon3;Parent=MS.gene95986.t1
chr2.4	CDS	23749251	23749495	23749251	ID=cds.MS.gene95986.t1;Parent=MS.gene95986.t1
chr2.4	exon	23748198	23748585	23748198	ID=MS.gene95986.t1.exon4;Parent=MS.gene95986.t1
chr2.4	CDS	23748198	23748585	23748198	ID=cds.MS.gene95986.t1;Parent=MS.gene95986.t1
chr2.4	exon	23747219	23747650	23747219	ID=MS.gene95986.t1.exon5;Parent=MS.gene95986.t1
chr2.4	CDS	23747219	23747650	23747219	ID=cds.MS.gene95986.t1;Parent=MS.gene95986.t1

Gene Sequence

>MS.gene95986

ATGGAAGCATTATGTGCAATATCTGCATGCATAATTCTTCTGGTAACACTTGTTTGGGCATGGAAGATGCTGATATGGTCATGGTTGAGGCCAAAGGAGCTAGAAAGGGTGCTAAGAGAACAAGGCCTTAAAGGGAATCCATATAGGTTTGTAGTTGGAGACATGAAGGAGTATTTAAATATGGAAAACGAAGTCAGATCCAAACCCATGAATCTCTCTGACGATATAGTGCCTCGTGTGTTTCCCTACGGTCATCAAAGTATTACAAAACATGGTATTCTTATATATGATTCTCCCTATCTTCTGTTGTTTTTCTTTACTCTCGCATCGGTCTTAAATATAAGAAAAAATTTGAATATAATTGGTATAAATTTGAACTAAAATATATTTGACAATTTCTTATATTTAAGATTGTTTGAAGTATTTTCGTTTGTACAATTTTGTTATTATATTATTCATCTATTTTCCCTCTTTCTATATACACTTCTTGATTTTGATAATCCTTACCGTTAAAAAAATTGATAATCCATAAATAAATATATTAAGAGATGAGTGAATGTGCCTGCTTACACCCTTGAGAATGCAGCCAAATCTTAACCTAGTTCTCCGTTAATTGGATTAAAATATGCCATCTTGTATTGAAGATTTATCTGCAAATGAAATGAAGTTATTATTTCTAGGGTCGGAGTCCCTAAATCTCCCCCCTTCCTCATGGGTCTGTCCCTGTCGCAGCACTTTAAGTGGGTTTTATACAAGTTGGGATATTCTTCATTTCTTAAAAATAGAGATATCTAATTTTATTTTAGATAGATTGAAATAAAAAGTAGATATCTAATTTTATCTTGTGCACAAGTGAGCAGTGATTCCTCAATTTTTAATAACAACAGAATATTAAGTACAAGGCAATAGTTTTATGAGCATTTGGAAGCTTGCATAAATGAGTTGCAAACAGCTGGATTAATTTCTAACCATTTGGATTAATTTCTAACCATTGTCTCATGATAATTGCTCTTCTCCCTTTCAAAATTACTCATTCCTTGAAAAATATCCAACGTGAGTTAAACTCACGTTCGGCTTTTTTCAACATGAATTAACTTACACCGGACATTTTTCAGCGTGGGTTAACTCACGCGGGAACTTTTAAGATTGGTGAATGAGCAAAAACAAAAGGGAGAAGAGCAATTTTCTTGTCTCATTTGGCTGATTGGGCCTATCTGTATTACTTGGCCCAATAGTGTGTTTGAGTTCTTTTGCTATTAGCACCTTCAAATCATTGTTGCGTCCTTCAGAATAAACCTTGTCCTCAAGGTTTAGTTTAGGGTAATTTTGGGCCAAGGTCTCTTTGTCCTCCCATCTTAAGAGCTGAATGTAGATCCTATTGAAATAATAATACTCCCTTCGTAATGGGTGATAAGTAGAGCAAAAATTTAGGAGTACTGCTCTTCTCCCATCTGTTTGAAGTAAGCAAAAAAAAAACCGTAAGTAAAAAAAGCATCATTTTTTTCCCTAAATTTTTGAAGTTAACTTAATCAAAAGCACCCATTTCACGTCTAAAAATTGGTTGTTCAAAAGCATCATTTTGAAGTTAACTTAATCAAAATAGAATGATGGTGAAAGCTAACTTCAAATGGGTGTTTTCCCAAAAAAATTTAGGAGTACCGCTCTTCTCCCATCTGTTTTTGCTCATTCCCGTCAAAAAAGCTGAGCGTAAGTTAACTCACGTAGGTATATTTTCAGCGTGAGTTAACTCACTCACTCAGGTTTATTTCTCAACAGAAATGAGCAAAAACATATGGGAGAAGAGCAATTCTCAAAATTTAGTGATACAGGGCTTTAAAACCAATTCTCCTTCTCTGGTTGATTATGCCCATCTATATTGTATGGCCCATGAGTGTCTTTTAGTCCTCTTGCTACTCGCACTTCTAGTTGTTACATATTTCACATCATTTTACTCAAAGGTATAGTGTTTTTGCTAATTAGATTAGATTAGAAATATGTTTTTGCTACATATTTCTTGGTGGTGTTATTATTTGATGATGCTAATGCATTGTTGATTTGCTTAACTTTAATTTAAAGAAATTATTATTATTTGTTTGCTAATAATGCAGGAAAAGATTCTTTTGTCTGGTTTGGACCAACACCAAGGGTGACCATCACAGATCCTGAGTTAGTTAAAGAAGTTTTCAATAAGATCTATGACTTCCAAAAGCCTAACTCGAATCCTCTTGTCAGAATACTAGCTACTGGTCTTATAACCCACGAGGGAGAAAAGTGGAGCAAGCACAGAAAGATAATAAATCCTGCATTCCATTTAGAAAAATTGAAGGCTAGTTTCCCTTTACTATACTCTCTCCATCTAGTCTAAAATATGTTTACTCTGGTTTCTTATATAAGAATTTGAGTATTTTTTGTCCTAAATATAAGAAACAATTGTAAATTTTAAGGTTTTGTCAAAAAAAAAAAAAATTGTCAATTTTAAGGTGTTTCATATTAGCATGTGAAAACATTTCATGTCAAGGTTACTTTAGTAAAAAAACTTTTTAAATGACCATGTTTAATACTTTGTCCAATCTTTTTAATAAGAAACAAAATACATAAATCAACCAGTGAAACACATTTTTTTTTTTACACAAGATCGGTGAAACACATTGAAAATAAATATTTTGATTTAATACTCATATTAATTTAAATTTATTTCATGGATACCCCAATATTAGTTACTGTTAATTCCATTAACTAAATTACTTTTAATATTTTCTCTCATAATAAATAAGGGCACAAATGAAAATTAGCTTCTACCACATTTTAATATTTGTCAATGTTTCTTATAAAAATGACTAAAAATATTGACACTTTCGTTCCGTACAAAAAGCACTGGAGGAAGTAAAACTTGTTGGTCTTCATGGGTTTTAAGAAGGACTAGAATTTTTAAAACTAAATGCATTTTCCCCGTAAGCATCGGTTAATATTTCCCTTTAAAATATTATGCATTTAGTTTGGTGTGCGAAATTTTAACTCTATTAATGATCGATCTCCTTTTGCACCACAGATGATGTTACCAATCTTCTTTAAAAGTTGCAATGATATGATTAGCAAATGGGAGGGAATGTTATCATTAGATGGATCGTGTGAAATTGATGTATGGCCTTCCATTCAAAATTTGGCTAGCGATGTTATTGCTCGAACGGCATTTGGAAGTAGTTATGAAGAAGGAATAAAAATATTTCAACTTCAAAAGGAGCAAGCTGAACTTACATTGGAAATTTTGATGAAAGTTTACATCCCTGGTTGGAGGTAAGACTAATATGTGCATTTGACTACTTGTTGACCAATAAAAGATAAAGCTTTATGAATGTGTTTGGATGAGGTGATTTGAAATTATAGAAAAATTACAATTCTAGGCAATTCAAATGCTTCGAATTCCTTTATTTTCTTCTTTTGTTGAAAGAGTTAAAAAAAATATAAAAAAAATCATTCTAACACTTTGTTGGACTATTTTATAAAATTTCAAAACTTGAGAACCAATTACAAAATATGAAGAAAAAAATACAGACCAATTTGCAAAATATTGAAATTTAAGGACCAATTTACAAATTTCAAAGATTTATAGGAACTAATTTGAAATTTCTTGAAAATTTATAGGGACCAATTTTTAAATTTTCATAGAATTAAAAGGATCAATTTGAGATTCACAATGTATATATTAATGAAGGAATTTCAAATTCTTAAATTTCAGATGATATTTGAAATTTTGTAAATTTAACTTTGACAGAAAACCATACAGTTCCTTTATTTTAAAAATTCTTTAAATTTATGATTCAAACAGTAAAATTTACATATAAAAAAATGAAATTCTCCTCTAAAACTATATTATCTCAACAAAAAAAAAACTCTTATAAATACACTCTTAAAAGTGTTATGTATAATATAATTAAACTCAAATAGAGTTTTTTTTCTAGGTTTCTACCTACTACTACAAACAAAAGGTTGAAGGAAATTAACAGGGAAATAATAGCTTCCTTGAATGATATTATTAACAAGAGAGAAAGAGAAATAAAGGCAGGGGAAGCCACTAAGAATGACTTATTAGGTATTCTTCTTGAATCAAATCACAAGGAAATTGAAGATAACAACAACAATAAGAATGTTGGAATGAATCGTGATGATGTAATCAAGGAATGCAAGCTATTCTACCTTGCAGGGGAAGAAACCACTTCAGTTTTGCTTGTTTGGACAATTGTATTATTGAGTAGGAACCCTAATTGGCAAGCACGTGCAAGAGAGGAAGTGCTACAAGTTTTTGGCAACAAACAACCAGATTTTGAAGGGCTAAGCCATCTTAAGATTGTAAGTATCTCTTCTTCAAAAAAAAAAAGATTGTAAGTATCTACTAAAAATTCATTGTTTATCGAACAATTTAGTGATTGGATCATTCTAGTCTCCATCAAGGTCGGTCCGATAATCTTCAAAAGTAAATCAAGCCTAAAGCAAATTTTGATATATGAGGCCTTTTTTATCGGCACATTTAAAGAATTTTACTTTTTTGTTCGTAGCCCTAAAGTGAGGGCTTTAATAGTGACCTTACCTTTGGACCGGCTCTGGTCTACATAAAGACCAATTTAATGACCAAATTATTTCAATCTGCATAGGACCGATGTAGCAATCGCGTTTTGCAATTAGTTGTTAAACGATTTTGTGACTAAATAAGAGAGCAAATTGAAAAATATCACTAAACCACTTGTTGCTTAAGTTAGCGAATGATTTAGTGACGGATTTCACATTTTCAATCTCTTAATCGGTCTATATAACAATTTTTTGTATAGAGATTTTTTTGTGATATCGAACATTATACAAATCATATTACTTACAAATAACACAAATCTTTTTGTGACAGATGACCATGATTTTGTATGAGGTTCTAAGGTTATACCCACCGGTAACCGTGCTTCCTCGAGCCGTTCACAAAGATGTAAAAGTTGGAAACCTAACATTACCGGCCGGAGTTCAGATTACCTTACCAATAGTTTGGCTTCACCACAACCATGAACTATGGGGTGAAGATGCTAAGGTGTTCAATCCTGAGAGATTTGCAGAAGGAGTTTCAAAAGCAACAAATGGAAGAAATTCATTTTTTCCATTTGGTGGGGGTCCAAGAATTTGCATTGGACAAAACTTTTCCATGTTGGAAGCAAAGATGGCAATAACATTGATTTTGCAGCATTTCACATTTGAACTTTCTCCAACCTATGCTCATGCTCCAGCTTCAGTAATTACCCTTCAGCCACAACATGGTGCTAATATCATTTTGCGTAAAGTGGAGATATAA

Protein sequence

>MS.gene95986.t1

MEALCAISACIILLVTLVWAWKMLIWSWLRPKELERVLREQGLKGNPYRFVVGDMKEYLNMENEVRSKPMNLSDDIVPRVFPYGHQRKDSFVWFGPTPRVTITDPELVKEVFNKIYDFQKPNSNPLVRILATGLITHEGEKWSKHRKIINPAFHLEKLKMMLPIFFKSCNDMISKWEGMLSLDGSCEIDVWPSIQNLASDVIARTAFGSSYEEGIKIFQLQKEQAELTLEILMKVYIPGWRFLPTTTNKRLKEINREIIASLNDIINKREREIKAGEATKNDLLGILLESNHKEIEDNNNNKNVGMNRDDVIKECKLFYLAGEETTSVLLVWTIVLLSRNPNWQARAREEVLQVFGNKQPDFEGLSHLKIMTMILYEVLRLYPPVTVLPRAVHKDVKVGNLTLPAGVQITLPIVWLHHNHELWGEDAKVFNPERFAEGVSKATNGRNSFFPFGGGPRICIGQNFSMLEAKMAITLILQHFTFELSPTYAHAPASVITLQPQHGANIILRKVEI