AlfalfaGEDB | MS.gene031869

M. sativa cultivar XinJiangDaYe / MS.gene031869

KEGG: K23977
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363
PFAM: PF00155.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031869.t1	RHN68525.1	73.9	842	153	9	1	834	26	808	0.00E+00	1194.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031869.t1	P9WPZ4	43.9	385	203	4	456	828	5	388	1.1e-84	316.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031869.t1	A0A396IWX1	73.9	842	153	9	1	834	26	808	0.0e+00	1194.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007080	MS.gene031869	PPI
MS.gene031869	MS.gene013282	PPI
MS.gene031869	MS.gene28109	PPI
MS.gene031869	MS.gene007078	PPI
MS.gene031869	MS.gene40923	PPI
MS.gene031869	MS.gene030769	PPI
MS.gene049260	MS.gene031869	PPI
MS.gene051894	MS.gene031869	PPI
MS.gene06367	MS.gene031869	PPI
MS.gene23066	MS.gene031869	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031869.t1	MTR_3g072670	97.528	445	11	0	390	834	1	445	0.0	897
MS.gene031869.t1	MTR_3g072670	84.426	366	57	0	1	366	79	444	0.0	666
MS.gene031869.t1	MTR_3g072680	96.986	365	11	0	1	365	36	400	0.0	742
MS.gene031869.t1	MTR_3g072680	83.459	399	59	1	443	834	4	402	0.0	709
MS.gene031869.t1	MTR_3g072690	76.776	366	31	2	1	366	1	312	0.0	548
MS.gene031869.t1	MTR_3g072690	71.662	367	50	3	468	834	1	313	1.12e-180	521
MS.gene031869.t1	MTR_1g087760	39.848	394	221	5	452	832	4	394	3.25e-83	272
MS.gene031869.t1	MTR_1g087760	39.683	378	212	5	1	365	20	394	4.44e-76	253
MS.gene031869.t1	MTR_7g106830	28.947	456	287	14	408	832	15	464	1.02e-49	182
MS.gene031869.t1	MTR_7g106830	29.111	371	241	9	11	365	100	464	1.62e-44	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031869.t1	AT1G77670	79.720	429	74	5	409	834	20	438	0.0	712
MS.gene031869.t1	AT1G77670	77.049	366	84	0	1	366	72	437	0.0	624
MS.gene031869.t1	AT2G22250	29.665	418	267	12	433	832	11	419	5.20e-52	188
MS.gene031869.t1	AT2G22250	29.570	372	240	9	11	366	55	420	2.92e-48	177
MS.gene031869.t1	AT2G22250	29.665	418	267	12	433	832	58	466	1.37e-51	188
MS.gene031869.t1	AT2G22250	29.570	372	240	9	11	366	102	467	6.33e-48	177
MS.gene031869.t1	AT2G22250	29.665	418	267	12	433	832	58	466	1.37e-51	188
MS.gene031869.t1	AT2G22250	29.570	372	240	9	11	366	102	467	6.33e-48	177
MS.gene031869.t1	AT5G36160	25.867	375	245	14	478	829	45	409	4.27e-24	106
MS.gene031869.t1	AT5G36160	25.414	362	247	11	17	362	55	409	2.13e-23	104

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Find 237 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGATAACCTCATCAC+CGG	0.572871	3.3:+63020282	None:intergenic
AAACAGAATAACCTCATCAC+CGG	0.568184	3.3:+63023673	None:intergenic
AAACATGGAGCTATTAATCT+TGG	0.439056	3.3:-63020538	MS.gene031869:CDS
AAATTCTGGACCATCAAAAT+TGG	0.186348	3.3:+63023895	None:intergenic
AACACGATAACCTCATCACC+GGG	0.634794	3.3:+63020283	None:intergenic
AACAGAATAACCTCATCACC+GGG	0.636868	3.3:+63023674	None:intergenic
AACAGCAGTGGACATGGTGG+CGG	0.511768	3.3:+63021765	None:intergenic
AACCTCAAATCCTATGCAGT+GGG	0.606106	3.3:-63019822	MS.gene031869:CDS
AACGGGGTGGAAGGTTGGAT+GGG	0.562198	3.3:-63023297	MS.gene031869:CDS
AAGAGGGGAAGAATCTAGTC+AGG	0.503919	3.3:-63022938	MS.gene031869:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGAACTTCATTGTTCA+TGG	-	chr3.3:63022738-63022757	MS.gene031869:intron	30.0%
AAACATGGAGCTATTAATCT+TGG	-	chr3.3:63022884-63022903	MS.gene031869:CDS	30.0%
AAATCTTAATATTGACCGGA+GGG	-	chr3.3:63022467-63022486	MS.gene031869:intron	30.0%
AAATTCTGGACCATCAAAAT+TGG	+	chr3.3:63019530-63019549	None:intergenic	30.0%
AAGGAAATGAATGAGAAAAG+GGG	-	chr3.3:63021875-63021894	MS.gene031869:CDS	30.0%
AAGGAAATTACTGTTACATC+TGG	-	chr3.3:63019682-63019701	MS.gene031869:CDS	30.0%
AAGGGTAACGATTTATAAGA+AGG	+	chr3.3:63021563-63021582	None:intergenic	30.0%
AAGTCAGAAAGGAATCAAAT+TGG	-	chr3.3:63021478-63021497	MS.gene031869:intron	30.0%
AAGTTATCCTATAGAGCTTA+AGG	+	chr3.3:63022213-63022232	None:intergenic	30.0%
AATTACACGAATCAAACCTT+TGG	+	chr3.3:63020646-63020665	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	63019475	63023969	63019475	ID=MS.gene031869
chr3.3	mRNA	63019475	63023969	63019475	ID=MS.gene031869.t1;Parent=MS.gene031869
chr3.3	exon	63022874	63023969	63022874	ID=MS.gene031869.t1.exon1;Parent=MS.gene031869.t1
chr3.3	CDS	63022874	63023969	63022874	ID=cds.MS.gene031869.t1;Parent=MS.gene031869.t1
chr3.3	exon	63021738	63021997	63021738	ID=MS.gene031869.t1.exon2;Parent=MS.gene031869.t1
chr3.3	CDS	63021738	63021997	63021738	ID=cds.MS.gene031869.t1;Parent=MS.gene031869.t1
chr3.3	exon	63019475	63020623	63019475	ID=MS.gene031869.t1.exon3;Parent=MS.gene031869.t1
chr3.3	CDS	63019475	63020623	63019475	ID=cds.MS.gene031869.t1;Parent=MS.gene031869.t1

Gene Sequence

>MS.gene031869

ATGAGTATGCTTGCCATCACACATGGAGCTATAAACCTTAGTCAGGGCTTTCCCAATTTTGATGGTCCAGAATTTGTAAAGGAAGCTGCAATTCAAGCTATCAGGGATGGGAATAATCAGTATGCAAGGGGTTTTGGACTTCCAGATCTCAACATTGTCATTGCTGAGAGATTCAAGAAAGATACTGGACTAATTGTAGATCCTGATAAGGAAATTACTGTTACATCTGGTTGCACAGAAGCAATCGCTGCAACTGTATTAGGATTAATAAATCCCGGTGATGAGGTTATTCTGTTTGCTCCCTTTTATGATTCTTATGGTGCCACTTTATCCATGGCTGGTGCGAATATAAAAAGCATTACTCTGCGCCCTCCAGATTTCGCTGTCCCGATTGATGAGTTGAAGTCGACCATCTCAAAGAATACTCGTGCCATTCTTATAAATACCCCTCACAACCCTACTGGAAACATGTTCACTCGAGAGGAGCTCGATTCTGTTGCATCTCTTTGCATTGAGAATGATGTTCTGGTTTTCACTGATGAAGTGTATCATAAGTTGGCATTCGATATGGAGCACATTTCAATTGCTACTTTGCCTGGAATGTTCGAGCGGACGGTGACAATGAACTCATTAGGGAAGTCATTCTCCTTAACGGGGTGGAAGGTTGGATGGGCCATAGCGCCTCCACACTTAATGTGGGGAGTGCGACTGGCACACACTTATATCAGTTTTTCAATTTCCCATCCTTTGCAGTGTGGGGCTGCAGCAGCACTTAGAGCACCAGATTCTTACTATGTGGAGCTAAAGAGGGACTATATCGCAAAGAGAGCTATTTTGGTTGAAGGATTGAAGGCTGTTGGGTTCAAGGTATTCCCGTCCAATGGAACCTTTTTTGTGCTTGCAGATCACACCCCTTTTGGACATGAAAATGATGTTGCATTTTGTGAATATCTAATTAAGGAGGTCGGTGTGGCGGCAATACCTTTAAGTGTATTTTACTTGAATCCAGAAGAGGGGAAGAATCTAGTCAGGTTTACTTTCTGCAAGGACGAGGAAACTATTAAGGCTGCTGTTGAAAGGATGAAGGAGAAGCTTAGTAAATAATCTCTGTGCATGATCATGTCATGTGATACATATATAAATAAAGACATTTTCCTTTCTAGTATCCCCAAAGGTTTGATTCGTGTAATTTCTGCTATCTTCTTCCCCTGAATGTCGATGTTTTGATGGGTATGTGCTGGTTTATTCTGTAGTAACTATTAAGAGTACAGATTCAGTGTTGCATCAATAGTTTTAATTTCTTTACATTAGTTGTAGCATATATAGTCTCCTCTCTTATCACTTTGTTGTATTATACATTAATAATGTTGAGTGTGATTATTCCAGCATTACTATGTCAAAATAGAGTGAGATATACTCCATCCTGCATTAGAAGGCCTTATATATTACTACACTAAGAGCTAGATAGTCATGTTTTTCAGATTTGAACTTTCTTTTTTCAAGTTACTGGTTGTATGTCTACAGTCCATGATCATGTTTCTGTTGGATCTTATTTTTAATTATAATGTATTATTTTTCCCATTGTAACTCCGAATTTTCCAATTATTCATGTTAAGAGCTTAATTTATAGCCACTAAACTATTTGACAAAGAAAAAATACATGCTAATACGTTGGTATTTTCATTTGAATAATTCTATTTAAAACATCTCAAAAAACTTAATATTACGTACCACAAATGCTAATATGTACCTAGGAAACATGTTATTGAACTCAATTTTTTTTTTTTAGAAAAAATGTCTTTGTATATTTAATTTTTTAAAACTTAAAATATTATGTTTTCGAATGCAAAATTATTACTTTCACAATTTTGTTTGGTAATTTTAGACCATTTTATCTTTGGTGGAGCTTGAGGATTCAACTCAATAAGTTCATTCTTATTATGTTTCACTCTCCGTCGGTCCTTCCTACCAGAAACGTGGCCGTGTGACCTTCGCGAAGCATTAAGTCAGAAAGGAATCAAATTGGAATACTGTAGTATTAATATGCAGCTCCCCTGCTGCACACATTCTCTCCTCAGATTCATTCCTTCTTATAAATCGTTACCCTTTTCTACTATTCATTTCAATTTCAACACCTCCTCATTCTCCTATAAACCCCCCAAATTCCCATCTCCCATTGCTGCCGCCACCATGTCCACTGCTGTTTCCACTGACAATATCACTCCTTTGCAGGTTCATCCTATTTATTAATTGTTTATTTTCCATTAATTCATTTCTGGGGGTTCGTTCTTCTCATCGATCAAATTTTTCACTGCAATAATATTTTTGAGCTTTCATCAGTTTCTCTAATACACTTGAGAATATTCATATTTACTGGTAGAAAGGATTTGGGGAAAAGGGAAGGAAATGAATGAGAAAAGGGGATAGATTTAGGTTGTTTGAATGTAAAAAAGAATACCCTAATTTAGGTCTATTTGCTTTGCTAACATCAAATATACGTTCGGATTGATGGTGGGCATTACAGTTTCACGATGTGTCACTGTTATTTTGGCAAAGCTATAGTTTGGAGCTTAAACAAAATCATTGTCCATGGTGATTTCGTCAAACTCACCATGATTCTCAAACACATATTCACTTATTTAAGCTTATCTATTAATATAAGCAATTGTAGGACTGTTTGAGAGAACTTATGAAAATAGCTTATAACATGTTTATAAGTTGTTTTCAGCTTATTTCCTTAAGCTCTATAGGATAACTTACGAAAATAACTTATAGCTTATATATGAAAATAATTTGCCTTATTTTATTTTTTTCTTGTAGAAATAGCTTATGCATAAACTCTAATGTGATTAACACTTATACTATATGTTAGAATAATAAGCAAAAAATCATTTTTTAGATTCATTGAATGATTGATGTATCTGGTCTGGTCTATAAGATAGACCACATACATCAGTTATTCAATGAACCTAAAAAGTGACTTTTTACTTATAAATCTTAATATTGACCGGAGGGAGTAAGCACTTAATAGTTGTTTAACCAAATAGGACCTAAGTTTATATGATGATGCTAGCTTGTTTACCTTTCAAAACCGTCCTGATTGGGGTAAGGACCAAGGATAATATATTGCCTGGTAGAAGCAGGAGGTTTTTTTTTTTTTTTTTTTGAGAAGGAAGCCAGAGGATTTATGAAAGGATGAAATTTGGTTCTATTGCTTACCTGTTATCATTGATCAAAATAAGTGAAGAAAAATATGAGGGAAGAAACAGAACTTCATTGTTCATGGTTGAGCCATGTGTTTATGTTAATACTTAATAGTTTTTGTTTGCTTTAATTTGTTTGTTAGGTTGCAAAGCGATTAGAGAAGTTCAAAACAACAATTTTCACCCAAATGAGTATGCTTGCCATCAAACATGGAGCTATTAATCTTGGTCAGGGTTTTCCAAATTTTGATGGTCCAGACTTTGTAAAGGAAGCAGCCATTCAAGCAATCAGGGACGGGAATAATCAGTATGCTAGGGGTTATGGAGTTCCAGACCTCAACATTGCCATTTCTGAGAGGTTTAAGAAAGATACTGGGCTAGCTGTAGACCCTGAAAAGGAAATTACTGTTACTTCTGGGTGCACGGAAGCAATTGCTGCAACTGTGTTGGGATTGATAAATCCCGGTGATGAGGTTATCGTGTTTGCCCCTTTTTATGATTCGTATGAAGCCACTTTATCCATGGCTGGCGCAAAAGTAAAAGGCATCACCCTGCGCCCTCCAGACTTTGCTCTACCCATTGAAGAGTTGAAGTCCTCAATCTCAAAGAATACTCGTGCTATTCTTTTAAATACCCCTCACAATCCTACTGGAAAGATGTTCACTCAAGAGGAGCTCAATACCATCGCTTCTCTTTGCATTGAGAATGATGTTCTGGTTTTTTCTGATGAAGTGTATGATAAGTTGGCATTTGATATGGAACACATTTCAATTGCTTCTTTGCCAGGAATGTTCGAGCGGACGGTGACAATGAACTCATTAGGGAAGACATTCTCCTTGACTGGATGGAAAATCGGCTGGGCCATAGCACCTCCACACTTAACATGGGGAGTGCGACAGGCACATGCTTTCCTGACTTTTGCAACCTCAAATCCTATGCAGTGGGCTGCTGCTGTAGCTCTAAGAGCACCAGATTCTTATTACACTGAACTAAAGAGGGACTATATGGCAAAGAGAGCTATTTTGGTTGAAGGATTGAAGGCTGTTGGCTTCAAGGTATTCCCGTCTAGTGGAACCTACTTTGTGGTTGTAGATCACACCCCTTTTGGACATGAAAATGACATTGCATTTTGCGAATATCTAGTTAAGGAGGTGGGAGTAGTGGCAATTCCTACCAGTGTGTTTTACTTGAATCCAGAAGAGGGAAAGAATCTGGTCCGATTTACTTTCTGCAAGGATGAAGGAACTCTTAGGGCTGCTGTTGAGAGAATGAAGGAGAAACTTAGAAAATGA

Protein sequence

>MS.gene031869.t1

MSMLAITHGAINLSQGFPNFDGPEFVKEAAIQAIRDGNNQYARGFGLPDLNIVIAERFKKDTGLIVDPDKEITVTSGCTEAIAATVLGLINPGDEVILFAPFYDSYGATLSMAGANIKSITLRPPDFAVPIDELKSTISKNTRAILINTPHNPTGNMFTREELDSVASLCIENDVLVFTDEVYHKLAFDMEHISIATLPGMFERTVTMNSLGKSFSLTGWKVGWAIAPPHLMWGVRLAHTYISFSISHPLQCGAAAALRAPDSYYVELKRDYIAKRAILVEGLKAVGFKVFPSNGTFFVLADHTPFGHENDVAFCEYLIKEVGVAAIPLSVFYLNPEEGKNLVRFTFCKDEETIKAAVERMKEKLKTWPCDLREALSQKGIKLEYCSINMQLPCCTHSLLRFIPSYKSLPFSTIHFNFNTSSFSYKPPKFPSPIAAATMSTAVSTDNITPLQVAKRLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGNNQYARGYGVPDLNIAISERFKKDTGLAVDPEKEITVTSGCTEAIAATVLGLINPGDEVIVFAPFYDSYEATLSMAGAKVKGITLRPPDFALPIEELKSSISKNTRAILLNTPHNPTGKMFTQEELNTIASLCIENDVLVFSDEVYDKLAFDMEHISIASLPGMFERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHAFLTFATSNPMQWAAAVALRAPDSYYTELKRDYMAKRAILVEGLKAVGFKVFPSSGTYFVVVDHTPFGHENDIAFCEYLVKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEGTLRAAVERMKEKLRK