Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031997.t1 | XP_003600862.1 | 98.6 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 1.80E-155 | 558.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031997.t1 | O04202 | 75.9 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 2.3e-127 | 456.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031997.t1 | B7FK44 | 98.6 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 1.3e-155 | 558.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031997 | MS.gene018310 | PPI |
| MS.gene017884 | MS.gene031997 | PPI |
| MS.gene031997 | MS.gene057320 | PPI |
| MS.gene031997 | MS.gene37293 | PPI |
| MS.gene031997 | MS.gene56675 | PPI |
| MS.gene031997 | MS.gene80790 | PPI |
| MS.gene008081 | MS.gene031997 | PPI |
| MS.gene031997 | MS.gene29607 | PPI |
| MS.gene031999 | MS.gene031997 | PPI |
| MS.gene031997 | MS.gene014112 | PPI |
| MS.gene031997 | MS.gene39043 | PPI |
| MS.gene031997 | MS.gene69251 | PPI |
| MS.gene42526 | MS.gene031997 | PPI |
| MS.gene031997 | MS.gene86150 | PPI |
| MS.gene018309 | MS.gene031997 | PPI |
| MS.gene031997 | MS.gene80661 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031997.t1 | MTR_3g070190 | 98.611 | 288 | 4 | 0 | 1 | 288 | 1 | 288 | 0.0 | 584 |
| MS.gene031997.t1 | MTR_5g082000 | 88.889 | 288 | 28 | 1 | 1 | 288 | 1 | 284 | 0.0 | 521 |
| MS.gene031997.t1 | MTR_3g070180 | 33.096 | 281 | 170 | 7 | 17 | 283 | 10 | 286 | 1.37e-34 | 127 |
| MS.gene031997.t1 | MTR_5g081980 | 32.841 | 271 | 165 | 6 | 25 | 282 | 19 | 285 | 2.47e-34 | 127 |
| MS.gene031997.t1 | MTR_5g082010 | 39.310 | 145 | 30 | 4 | 77 | 221 | 8 | 94 | 1.03e-18 | 79.7 |
| MS.gene031997.t1 | MTR_3g009270 | 23.856 | 306 | 195 | 6 | 14 | 284 | 2 | 304 | 6.83e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031997.t1 | AT2G39990 | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 1.64e-160 | 448 |
| MS.gene031997.t1 | AT3G11270 | 32.979 | 282 | 169 | 7 | 17 | 282 | 5 | 282 | 1.68e-36 | 132 |
| MS.gene031997.t1 | AT3G11270 | 32.632 | 285 | 169 | 7 | 17 | 282 | 5 | 285 | 4.87e-36 | 131 |
| MS.gene031997.t1 | AT5G05780 | 31.560 | 282 | 173 | 7 | 17 | 282 | 5 | 282 | 1.27e-33 | 125 |
| MS.gene031997.t1 | AT5G05780 | 31.228 | 285 | 173 | 7 | 17 | 282 | 5 | 285 | 3.33e-33 | 124 |
| MS.gene031997.t1 | AT4G26430 | 24.342 | 304 | 191 | 7 | 16 | 284 | 4 | 303 | 2.92e-13 | 69.3 |
| MS.gene031997.t1 | AT5G56280 | 24.752 | 303 | 191 | 7 | 16 | 284 | 4 | 303 | 1.11e-12 | 67.8 |
Find 60 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGTCATTGGAACGCTTCT+TGG | 0.210700 | 3.4:-69908771 | MS.gene031997:CDS |
| GTTGCACCAGACAACAAAAT+TGG | 0.229921 | 3.4:-69906033 | MS.gene031997:CDS |
| ACAGTCAGAATTACAAAATC+TGG | 0.275877 | 3.4:+69905677 | None:intergenic |
| TGTCAACAGTGGTTGCCTTT+AGG | 0.305583 | 3.4:+69906228 | None:intergenic |
| GTTTGACACATAAGCTTTGA+TGG | 0.319915 | 3.4:+69906966 | None:intergenic |
| CTTGGATCTGTTCTTCCTGA+TGG | 0.343100 | 3.4:-69908753 | MS.gene031997:CDS |
| GCTTGTGAACGACAGCTTAC+AGG | 0.343421 | 3.4:-69905950 | MS.gene031997:intron |
| TCAACTGGACTTGGAGTAAC+TGG | 0.372693 | 3.4:-69907081 | MS.gene031997:CDS |
| GTGTCAAACAATTTATCTCT+TGG | 0.383210 | 3.4:-69906952 | MS.gene031997:CDS |
| TATTTATGCAGGTATTCAAC+TGG | 0.393038 | 3.4:-69907096 | MS.gene031997:intron |
| ATTCATTTGACTGTTGATAC+AGG | 0.396286 | 3.4:-69907009 | MS.gene031997:CDS |
| GATCAAGCTGAACGCGTCAT+TGG | 0.409335 | 3.4:-69908783 | MS.gene031997:CDS |
| AACAGTCAAATGAATGGGAT+TGG | 0.410536 | 3.4:+69907017 | None:intergenic |
| TGCAGGTATTCAACTGGACT+TGG | 0.422441 | 3.4:-69907090 | MS.gene031997:intron |
| AAAATCCCCTCTGACTTAGA+AGG | 0.446924 | 3.4:-69906206 | MS.gene031997:CDS |
| AGAAGGCATGGAAGCATCAA+TGG | 0.461890 | 3.4:-69906189 | MS.gene031997:CDS |
| AATCAAAAGGAAGTCATAGT+TGG | 0.465079 | 3.4:-69907578 | MS.gene031997:CDS |
| TCACAATGAATCCGTTGATC+AGG | 0.465189 | 3.4:-69908697 | MS.gene031997:intron |
| TGTATCAACAGTCAAATGAA+TGG | 0.465420 | 3.4:+69907011 | None:intergenic |
| TTGCACCAGACAACAAAATT+GGG | 0.482472 | 3.4:-69906032 | MS.gene031997:CDS |
| ATGGTTGAAGCTGAGCGAAT+TGG | 0.484794 | 3.4:-69906880 | MS.gene031997:CDS |
| GAGGAACAGCATATGAATTA+CGG | 0.486958 | 3.4:+69908718 | None:intergenic |
| ACAATTTATCTCTTGGAGAC+AGG | 0.488454 | 3.4:-69906945 | MS.gene031997:CDS |
| ACAGTCAAATGAATGGGATT+GGG | 0.491042 | 3.4:+69907018 | None:intergenic |
| TTCTCAGAGCTTATCCGCTA+AGG | 0.495822 | 3.4:-69908856 | MS.gene031997:CDS |
| GTATCAACAGTCAAATGAAT+GGG | 0.496605 | 3.4:+69907012 | None:intergenic |
| CGGATATCAACAGTTCCATC+AGG | 0.497957 | 3.4:+69908738 | None:intergenic |
| CCCCTCTGACTTAGAAGGCA+TGG | 0.501688 | 3.4:-69906201 | MS.gene031997:CDS |
| GTTGATACAGGATTCACAAC+TGG | 0.502330 | 3.4:-69906997 | MS.gene031997:CDS |
| ATGACGCGTTCAGCTTGATC+AGG | 0.505348 | 3.4:+69908786 | None:intergenic |
| CACAAGAACTCAACTTAGCT+TGG | 0.506158 | 3.4:-69905722 | MS.gene031997:CDS |
| ACAAGCTTATCAAAATCAGA+TGG | 0.513873 | 3.4:+69905967 | None:intergenic |
| CAAGCTTATCAAAATCAGAT+GGG | 0.536179 | 3.4:+69905968 | None:intergenic |
| AATTCCACTGGATCTTCGTA+TGG | 0.540296 | 3.4:-69906899 | MS.gene031997:CDS |
| CTTCTCGAGAATAAAACTCA+TGG | 0.540683 | 3.4:+69907043 | None:intergenic |
| CAGTCAGAATTACAAAATCT+GGG | 0.544157 | 3.4:+69905678 | None:intergenic |
| GTTTCAGGATCACTTGCTCA+TGG | 0.545819 | 3.4:-69905761 | MS.gene031997:intron |
| AATGTCAGTTGATATCCTAA+AGG | 0.558985 | 3.4:-69906243 | MS.gene031997:intron |
| GGGACAACAACATATTATGA+TGG | 0.564682 | 3.4:+69907612 | None:intergenic |
| GAATTGCAACACTGTGCGAT+TGG | 0.579767 | 3.4:+69908896 | None:intergenic |
| TCCATGCCTTCTAAGTCAGA+GGG | 0.582710 | 3.4:+69906200 | None:intergenic |
| CAAATATGTTGATGATGTTG+TGG | 0.594015 | 3.4:-69906135 | MS.gene031997:intron |
| AAAAGGAAGTCATAGTTGGA+TGG | 0.597430 | 3.4:-69907574 | MS.gene031997:intron |
| AGCGGATAAGCTCTGAGAAG+AGG | 0.597938 | 3.4:+69908860 | None:intergenic |
| TTCCATGCCTTCTAAGTCAG+AGG | 0.599344 | 3.4:+69906199 | None:intergenic |
| CGAGGGAAGGACCTGATCAA+CGG | 0.606460 | 3.4:+69908686 | None:intergenic |
| GACGAGAGGATGAACCTTAG+CGG | 0.606488 | 3.4:+69908842 | None:intergenic |
| ACAGGATTCACAACTGGAGG+GGG | 0.607665 | 3.4:-69906991 | MS.gene031997:CDS |
| AAATTTATATCAGATGCAGT+AGG | 0.618068 | 3.4:-69906009 | MS.gene031997:CDS |
| GATACAGGATTCACAACTGG+AGG | 0.619089 | 3.4:-69906994 | MS.gene031997:CDS |
| ACTGGACTTGGAGTAACTGG+TGG | 0.625290 | 3.4:-69907078 | MS.gene031997:CDS |
| TGATCAACGGATTCATTGTG+AGG | 0.630205 | 3.4:+69908699 | None:intergenic |
| TACAGGATTCACAACTGGAG+GGG | 0.630808 | 3.4:-69906992 | MS.gene031997:CDS |
| ACAGTTTCAAGAAATTCCAC+TGG | 0.631890 | 3.4:-69906911 | MS.gene031997:CDS |
| AAGCTTATCAAAATCAGATG+GGG | 0.633795 | 3.4:+69905969 | None:intergenic |
| ATACAGGATTCACAACTGGA+GGG | 0.659687 | 3.4:-69906993 | MS.gene031997:CDS |
| AGCTTATCAAAATCAGATGG+GGG | 0.668310 | 3.4:+69905970 | None:intergenic |
| CAGATGTTGAATACGACGAG+AGG | 0.671951 | 3.4:+69908828 | None:intergenic |
| CCATGCCTTCTAAGTCAGAG+GGG | 0.694607 | 3.4:+69906201 | None:intergenic |
| TCAACCATACGAAGATCCAG+TGG | 0.695781 | 3.4:+69906895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAAAAATCAATATT+TGG | + | chr3.4:69908304-69908323 | None:intergenic | 10.0% |
| !! | TTTGTGAAAATATTAAATTA+AGG | - | chr3.4:69908273-69908292 | MS.gene031997:intron | 10.0% |
| !!! | TTTTAAATGAAAGAAAAAAA+TGG | + | chr3.4:69906232-69906251 | None:intergenic | 10.0% |
| !! | TGGTTAATATTAATATGAAA+TGG | - | chr3.4:69907297-69907316 | MS.gene031997:intron | 15.0% |
| !!! | TTTGCTTATTGTTTTTAAAA+CGG | - | chr3.4:69906298-69906317 | MS.gene031997:intron | 15.0% |
| !! | AAAGTAAATACTTATCTCAT+CGG | - | chr3.4:69906191-69906210 | MS.gene031997:CDS | 20.0% |
| !! | AAATAATCAAAGTTTACACA+AGG | + | chr3.4:69907482-69907501 | None:intergenic | 20.0% |
| !! | AATAATCAAAGTTTACACAA+GGG | + | chr3.4:69907481-69907500 | None:intergenic | 20.0% |
| !! | ATATTAATATACAAATGGAC+TGG | - | chr3.4:69907387-69907406 | MS.gene031997:intron | 20.0% |
| !! | ATCACATATTAAAATGTAGA+TGG | + | chr3.4:69905936-69905955 | None:intergenic | 20.0% |
| !! | GTTTATTGATATCTAATTAG+AGG | - | chr3.4:69906621-69906640 | MS.gene031997:intron | 20.0% |
| !! | TAAACTTTGATTATTTATGC+AGG | - | chr3.4:69907486-69907505 | MS.gene031997:intron | 20.0% |
| !! | TGGTTAATATTAATACGAAA+TGG | - | chr3.4:69907339-69907358 | MS.gene031997:intron | 20.0% |
| !!! | AAAAGCTAAGACTTTAAAAT+AGG | + | chr3.4:69907886-69907905 | None:intergenic | 20.0% |
| !!! | ATAATTGTGAACTTTTTGTT+TGG | - | chr3.4:69906029-69906048 | MS.gene031997:CDS | 20.0% |
| !!! | ATTGAATTTTTGTCTAGATA+AGG | - | chr3.4:69906473-69906492 | MS.gene031997:intron | 20.0% |
| !!! | CATTTGTTTTATATACCAAT+GGG | + | chr3.4:69907257-69907276 | None:intergenic | 20.0% |
| !!! | CTTAGCTTTTAATTATGTAA+TGG | - | chr3.4:69907896-69907915 | MS.gene031997:intron | 20.0% |
| !!! | GGTTGATATTAATATACAAA+TGG | - | chr3.4:69907382-69907401 | MS.gene031997:intron | 20.0% |
| !!! | TCAAACTCAGATTTTTTTTT+TGG | + | chr3.4:69906109-69906128 | None:intergenic | 20.0% |
| !!! | TTAGCTGTAACTTTTTTTAT+GGG | - | chr3.4:69907227-69907246 | MS.gene031997:intron | 20.0% |
| !!! | TTGAATTTTTGTCTAGATAA+GGG | - | chr3.4:69906474-69906493 | MS.gene031997:intron | 20.0% |
| !!! | TTGCTTATTGTTTTTAAAAC+GGG | - | chr3.4:69906299-69906318 | MS.gene031997:intron | 20.0% |
| !!! | TTTAGCTGTAACTTTTTTTA+TGG | - | chr3.4:69907226-69907245 | MS.gene031997:intron | 20.0% |
| ! | AAATTTATATCAGATGCAGT+AGG | - | chr3.4:69908584-69908603 | MS.gene031997:intron | 25.0% |
| ! | AACATTTACAGTTCTTTGTT+GGG | - | chr3.4:69907942-69907961 | MS.gene031997:intron | 25.0% |
| ! | AATACGAAATGGTTTCTTTA+GGG | - | chr3.4:69907350-69907369 | MS.gene031997:intron | 25.0% |
| ! | ACATATTAAAATGTAGATGG+AGG | + | chr3.4:69905933-69905952 | None:intergenic | 25.0% |
| ! | CCATTGGTATATAAAACAAA+TGG | - | chr3.4:69907255-69907274 | MS.gene031997:intron | 25.0% |
| ! | TAATACGAAATGGTTTCTTT+AGG | - | chr3.4:69907349-69907368 | MS.gene031997:intron | 25.0% |
| !! | ATTGATTAATTTTTCATCGC+AGG | - | chr3.4:69908529-69908548 | MS.gene031997:intron | 25.0% |
| !! | CTTTCAAACTCAAGAAATTT+TGG | + | chr3.4:69906175-69906194 | None:intergenic | 25.0% |
| !! | GACAAATAAAGCTTTATAGA+GGG | + | chr3.4:69907806-69907825 | None:intergenic | 25.0% |
| !! | TGACAAATAAAGCTTTATAG+AGG | + | chr3.4:69907807-69907826 | None:intergenic | 25.0% |
| !!! | AATTGGATGTAAGTATTGAT+TGG | - | chr3.4:69907730-69907749 | MS.gene031997:intron | 25.0% |
| !!! | AGTTTTGACTTTGATTGATA+AGG | - | chr3.4:69906756-69906775 | MS.gene031997:intron | 25.0% |
| !!! | CCATTTGTTTTATATACCAA+TGG | + | chr3.4:69907258-69907277 | None:intergenic | 25.0% |
| !!! | CTAATTAGAGGTACTTTTTT+AGG | - | chr3.4:69906633-69906652 | MS.gene031997:intron | 25.0% |
| AAAATGTTCACTCTGATATC+TGG | - | chr3.4:69907157-69907176 | MS.gene031997:intron | 30.0% | |
| AAAGAACTGTAAATGTTCAC+GGG | + | chr3.4:69907939-69907958 | None:intergenic | 30.0% | |
| AAGCAAGTCTATATACAGTA+TGG | + | chr3.4:69908112-69908131 | None:intergenic | 30.0% | |
| AAGCTTATCAAAATCAGATG+GGG | + | chr3.4:69908627-69908646 | None:intergenic | 30.0% | |
| AAGGAAAAAAGAAAGAAAGC+GGG | + | chr3.4:69907772-69907791 | None:intergenic | 30.0% | |
| AATCAAAAGGAAGTCATAGT+TGG | - | chr3.4:69907015-69907034 | MS.gene031997:CDS | 30.0% | |
| ACAAGCTTATCAAAATCAGA+TGG | + | chr3.4:69908629-69908648 | None:intergenic | 30.0% | |
| ACATTTACAGTTCTTTGTTG+GGG | - | chr3.4:69907943-69907962 | MS.gene031997:intron | 30.0% | |
| AGTGATAACATTGACAACTA+TGG | + | chr3.4:69907067-69907086 | None:intergenic | 30.0% | |
| ATAAGATGAACAAACACTTG+AGG | + | chr3.4:69906455-69906474 | None:intergenic | 30.0% | |
| ATATACAGTATGGTGAAACT+TGG | + | chr3.4:69908102-69908121 | None:intergenic | 30.0% | |
| ATTCATTTGACTGTTGATAC+AGG | - | chr3.4:69907584-69907603 | MS.gene031997:CDS | 30.0% | |
| CAAAGAACTGTAAATGTTCA+CGG | + | chr3.4:69907940-69907959 | None:intergenic | 30.0% | |
| CAAGCTTATCAAAATCAGAT+GGG | + | chr3.4:69908628-69908647 | None:intergenic | 30.0% | |
| CATCACTTTATTGTTTCCAT+TGG | - | chr3.4:69908151-69908170 | MS.gene031997:intron | 30.0% | |
| GAACATTTACAGTTCTTTGT+TGG | - | chr3.4:69907941-69907960 | MS.gene031997:intron | 30.0% | |
| GAAGGAAAAAAGAAAGAAAG+CGG | + | chr3.4:69907773-69907792 | None:intergenic | 30.0% | |
| GTACAACAATATCCTTACTT+TGG | + | chr3.4:69906058-69906077 | None:intergenic | 30.0% | |
| GTATCAACAGTCAAATGAAT+GGG | + | chr3.4:69907584-69907603 | None:intergenic | 30.0% | |
| GTGTAAAAGTTATACGCTTA+AGG | - | chr3.4:69906802-69906821 | MS.gene031997:intron | 30.0% | |
| GTGTCAAACAATTTATCTCT+TGG | - | chr3.4:69907641-69907660 | MS.gene031997:intron | 30.0% | |
| TACTACTCACTTTATTGTCT+AGG | - | chr3.4:69908501-69908520 | MS.gene031997:intron | 30.0% | |
| TATTTATGCAGGTATTCAAC+TGG | - | chr3.4:69907497-69907516 | MS.gene031997:intron | 30.0% | |
| TGTATCAACAGTCAAATGAA+TGG | + | chr3.4:69907585-69907604 | None:intergenic | 30.0% | |
| ! | AATGTCAGTTGATATCCTAA+AGG | - | chr3.4:69908350-69908369 | MS.gene031997:intron | 30.0% |
| ! | ATTAATTTTTCATCGCAGGA+AGG | - | chr3.4:69908533-69908552 | MS.gene031997:intron | 30.0% |
| ! | TTAATTTTTCATCGCAGGAA+GGG | - | chr3.4:69908534-69908553 | MS.gene031997:intron | 30.0% |
| ! | TTTGACTTTGATTGATAAGG+TGG | - | chr3.4:69906759-69906778 | MS.gene031997:intron | 30.0% |
| !! | AATTTCCCAATTTTGTTGTC+TGG | + | chr3.4:69908569-69908588 | None:intergenic | 30.0% |
| !! | CAAATATGTTGATGATGTTG+TGG | - | chr3.4:69908458-69908477 | MS.gene031997:intron | 30.0% |
| !! | CTTCCTTTTGATTCACTTTT+TGG | + | chr3.4:69907008-69907027 | None:intergenic | 30.0% |
| !!! | AGGAAGTTTTTTTCTCTTTG+CGG | - | chr3.4:69906653-69906672 | MS.gene031997:intron | 30.0% |
| !!! | CTTTTGATTCACTTTTTGGT+GGG | + | chr3.4:69907004-69907023 | None:intergenic | 30.0% |
| AAAAATGAAAGTGGGTCTCT+TGG | - | chr3.4:69906326-69906345 | MS.gene031997:intron | 35.0% | |
| AAAAGGAAGTCATAGTTGGA+TGG | - | chr3.4:69907019-69907038 | MS.gene031997:CDS | 35.0% | |
| AAAATGAAAGTGGGTCTCTT+GGG | - | chr3.4:69906327-69906346 | MS.gene031997:intron | 35.0% | |
| AACAAACACTTGAGGAACTT+AGG | + | chr3.4:69906447-69906466 | None:intergenic | 35.0% | |
| AACAGTCAAATGAATGGGAT+TGG | + | chr3.4:69907579-69907598 | None:intergenic | 35.0% | |
| ACAATTTATCTCTTGGAGAC+AGG | - | chr3.4:69907648-69907667 | MS.gene031997:intron | 35.0% | |
| ACAGTCAAATGAATGGGATT+GGG | + | chr3.4:69907578-69907597 | None:intergenic | 35.0% | |
| ACAGTTTCAAGAAATTCCAC+TGG | - | chr3.4:69907682-69907701 | MS.gene031997:intron | 35.0% | |
| AGCTTATCAAAATCAGATGG+GGG | + | chr3.4:69908626-69908645 | None:intergenic | 35.0% | |
| ATAGAGGGAGAAGAATAAGA+AGG | + | chr3.4:69907791-69907810 | None:intergenic | 35.0% | |
| CAAATACACCACTAAAGAAG+AGG | + | chr3.4:69907435-69907454 | None:intergenic | 35.0% | |
| CAAGCTTCGGCAAATATATA+AGG | + | chr3.4:69907843-69907862 | None:intergenic | 35.0% | |
| CATTTACAGTTCTTTGTTGG+GGG | - | chr3.4:69907944-69907963 | MS.gene031997:intron | 35.0% | |
| CCACCAAAAAGTGAATCAAA+AGG | - | chr3.4:69907002-69907021 | MS.gene031997:CDS | 35.0% | |
| CTCTTCTTTAGTGGTGTATT+TGG | - | chr3.4:69907433-69907452 | MS.gene031997:intron | 35.0% | |
| CTTCTCGAGAATAAAACTCA+TGG | + | chr3.4:69907553-69907572 | None:intergenic | 35.0% | |
| CTTGGCAGAAAAATTGAACA+CGG | - | chr3.4:69908889-69908908 | MS.gene031997:CDS | 35.0% | |
| GAAGAAATAGACACAACTAC+AGG | + | chr3.4:69906837-69906856 | None:intergenic | 35.0% | |
| GAGAAAATCAATCCAGTAGT+AGG | - | chr3.4:69907988-69908007 | MS.gene031997:intron | 35.0% | |
| GAGGAACAGCATATGAATTA+CGG | + | chr3.4:69905878-69905897 | None:intergenic | 35.0% | |
| GATTGACACAACATTACCAA+TGG | + | chr3.4:69908170-69908189 | None:intergenic | 35.0% | |
| GGGACAACAACATATTATGA+TGG | + | chr3.4:69906984-69907003 | None:intergenic | 35.0% | |
| TAGATCTGGGAAATTATAGG+AGG | + | chr3.4:69906386-69906405 | None:intergenic | 35.0% | |
| TCTGATTCATCTCATACAAG+AGG | + | chr3.4:69906532-69906551 | None:intergenic | 35.0% | |
| TTGCACCAGACAACAAAATT+GGG | - | chr3.4:69908561-69908580 | MS.gene031997:intron | 35.0% | |
| TTTGTTTGGAAGCCAAAGTA+AGG | - | chr3.4:69906043-69906062 | MS.gene031997:CDS | 35.0% | |
| ! | AAGAGACCCACTTTCATTTT+TGG | + | chr3.4:69906327-69906346 | None:intergenic | 35.0% |
| ! | AATGTTCACGGGTTGTATAA+AGG | + | chr3.4:69907928-69907947 | None:intergenic | 35.0% |
| ! | AATTGTTCTGACCTTTTTCC+AGG | - | chr3.4:69906939-69906958 | MS.gene031997:CDS | 35.0% |
| ! | CAATTAGAGGCTTTGTCATT+TGG | + | chr3.4:69908077-69908096 | None:intergenic | 35.0% |
| ! | CATTTTGAACCTACGTCATA+TGG | + | chr3.4:69907143-69907162 | None:intergenic | 35.0% |
| ! | GTTACTGTGTTTTACGAAGT+GGG | - | chr3.4:69908682-69908701 | MS.gene031997:intron | 35.0% |
| ! | GTTTCTTTAGAGATCATCAC+TGG | - | chr3.4:69907277-69907296 | MS.gene031997:intron | 35.0% |
| ! | GTTTGACACATAAGCTTTGA+TGG | + | chr3.4:69907630-69907649 | None:intergenic | 35.0% |
| ! | TGTTACTGTGTTTTACGAAG+TGG | - | chr3.4:69908681-69908700 | MS.gene031997:intron | 35.0% |
| !! | AGAGACCCACTTTCATTTTT+GGG | + | chr3.4:69906326-69906345 | None:intergenic | 35.0% |
| !! | CTTTGAAATCCATATGACGT+AGG | - | chr3.4:69907131-69907150 | MS.gene031997:intron | 35.0% |
| !! | TCACCTAACATAGCTTTGTT+TGG | - | chr3.4:69908791-69908810 | MS.gene031997:CDS | 35.0% |
| !!! | CCTTTTGATTCACTTTTTGG+TGG | + | chr3.4:69907005-69907024 | None:intergenic | 35.0% |
| !!! | TTTTTTATGGGAAGACCCAT+TGG | - | chr3.4:69907239-69907258 | MS.gene031997:intron | 35.0% |
| AAAATCAGATGGGGGCAATT+TGG | + | chr3.4:69908618-69908637 | None:intergenic | 40.0% | |
| AAAATCCCCTCTGACTTAGA+AGG | - | chr3.4:69908387-69908406 | MS.gene031997:intron | 40.0% | |
| AAATCAGATGGGGGCAATTT+GGG | + | chr3.4:69908617-69908636 | None:intergenic | 40.0% | |
| AATTCCACTGGATCTTCGTA+TGG | - | chr3.4:69907694-69907713 | MS.gene031997:intron | 40.0% | |
| ACACATGCTTCATCTGTTTC+AGG | - | chr3.4:69908817-69908836 | MS.gene031997:CDS | 40.0% | |
| ACACTTACACTACCTACTAC+TGG | + | chr3.4:69908003-69908022 | None:intergenic | 40.0% | |
| AGTAGAATCGTACCTTGATG+AGG | + | chr3.4:69906357-69906376 | None:intergenic | 40.0% | |
| ATACAGGATTCACAACTGGA+GGG | - | chr3.4:69907600-69907619 | MS.gene031997:CDS | 40.0% | |
| CACAAGAACTCAACTTAGCT+TGG | - | chr3.4:69908871-69908890 | MS.gene031997:CDS | 40.0% | |
| CAGCCAAACAAAGCTATGTT+AGG | + | chr3.4:69908797-69908816 | None:intergenic | 40.0% | |
| CGCTAGATCTGGGAAATTAT+AGG | + | chr3.4:69906389-69906408 | None:intergenic | 40.0% | |
| CTAAGTTGCCTCTTCTTTAG+TGG | - | chr3.4:69907424-69907443 | MS.gene031997:intron | 40.0% | |
| GTAGAATCGTACCTTGATGA+GGG | + | chr3.4:69906356-69906375 | None:intergenic | 40.0% | |
| GTGAAACTTGGCTCAATTAG+AGG | + | chr3.4:69908090-69908109 | None:intergenic | 40.0% | |
| GTTGATACAGGATTCACAAC+TGG | - | chr3.4:69907596-69907615 | MS.gene031997:CDS | 40.0% | |
| GTTGCACCAGACAACAAAAT+TGG | - | chr3.4:69908560-69908579 | MS.gene031997:intron | 40.0% | |
| TAAAATGTAGATGGAGGCGA+GGG | + | chr3.4:69905927-69905946 | None:intergenic | 40.0% | |
| TCACAATGAATCCGTTGATC+AGG | - | chr3.4:69905896-69905915 | MS.gene031997:intron | 40.0% | |
| TCACTTCTGAACCAAGCAAT+TGG | - | chr3.4:69908204-69908223 | MS.gene031997:intron | 40.0% | |
| TGAAAAGACCTCCAATTGCT+TGG | + | chr3.4:69908218-69908237 | None:intergenic | 40.0% | |
| TTAAAATGTAGATGGAGGCG+AGG | + | chr3.4:69905928-69905947 | None:intergenic | 40.0% | |
| ! | AGTGGTGTATTTGGTGATCT+TGG | - | chr3.4:69907442-69907461 | MS.gene031997:intron | 40.0% |
| ! | GTGGTGTATTTGGTGATCTT+GGG | - | chr3.4:69907443-69907462 | MS.gene031997:intron | 40.0% |
| ! | GTTTCTTTAGGGATCATCAC+TGG | - | chr3.4:69907361-69907380 | MS.gene031997:intron | 40.0% |
| ! | TGATATCTGGAAGTGTGGAA+TGG | - | chr3.4:69907170-69907189 | MS.gene031997:intron | 40.0% |
| ! | TGATCAACGGATTCATTGTG+AGG | + | chr3.4:69905897-69905916 | None:intergenic | 40.0% |
| ! | TTTTTGTCTAGATAAGGGCG+AGG | - | chr3.4:69906479-69906498 | MS.gene031997:intron | 40.0% |
| ACGGGACCCAAAAATGAAAG+TGG | - | chr3.4:69906317-69906336 | MS.gene031997:intron | 45.0% | |
| ATGGTTGAAGCTGAGCGAAT+TGG | - | chr3.4:69907713-69907732 | MS.gene031997:intron | 45.0% | |
| CACTCTGATATCTGGAAGTG+TGG | - | chr3.4:69907165-69907184 | MS.gene031997:intron | 45.0% | |
| CAGATGTTGAATACGACGAG+AGG | + | chr3.4:69905768-69905787 | None:intergenic | 45.0% | |
| CGGATATCAACAGTTCCATC+AGG | + | chr3.4:69905858-69905877 | None:intergenic | 45.0% | |
| CGGGACCCAAAAATGAAAGT+GGG | - | chr3.4:69906318-69906337 | MS.gene031997:intron | 45.0% | |
| CTTCTGAACCAAGCAATTGG+AGG | - | chr3.4:69908207-69908226 | MS.gene031997:intron | 45.0% | |
| CTTGGATCTGTTCTTCCTGA+TGG | - | chr3.4:69905840-69905859 | MS.gene031997:intron | 45.0% | |
| GAATTGCAACACTGTGCGAT+TGG | + | chr3.4:69905700-69905719 | None:intergenic | 45.0% | |
| GATACAGGATTCACAACTGG+AGG | - | chr3.4:69907599-69907618 | MS.gene031997:CDS | 45.0% | |
| GTTTCAGGATCACTTGCTCA+TGG | - | chr3.4:69908832-69908851 | MS.gene031997:CDS | 45.0% | |
| TACAGGATTCACAACTGGAG+GGG | - | chr3.4:69907601-69907620 | MS.gene031997:CDS | 45.0% | |
| TCAACCATACGAAGATCCAG+TGG | + | chr3.4:69907701-69907720 | None:intergenic | 45.0% | |
| TCAACTGGACTTGGAGTAAC+TGG | - | chr3.4:69907512-69907531 | MS.gene031997:intron | 45.0% | |
| TCCATGCCTTCTAAGTCAGA+GGG | + | chr3.4:69908396-69908415 | None:intergenic | 45.0% | |
| TGCAGGTATTCAACTGGACT+TGG | - | chr3.4:69907503-69907522 | MS.gene031997:intron | 45.0% | |
| TGTCAACAGTGGTTGCCTTT+AGG | + | chr3.4:69908368-69908387 | None:intergenic | 45.0% | |
| TTCCATGCCTTCTAAGTCAG+AGG | + | chr3.4:69908397-69908416 | None:intergenic | 45.0% | |
| TTCTCAGAGCTTATCCGCTA+AGG | - | chr3.4:69905737-69905756 | MS.gene031997:CDS | 45.0% | |
| ! | AGAGGGGATTTTGTCAACAG+TGG | + | chr3.4:69908379-69908398 | None:intergenic | 45.0% |
| ! | GTGTATTTGGTGATCTTGGG+AGG | - | chr3.4:69907446-69907465 | MS.gene031997:intron | 45.0% |
| ! | TCTGGAAGTGTGGAATGGAA+TGG | - | chr3.4:69907175-69907194 | MS.gene031997:intron | 45.0% |
| ! | TGTTCTGACCTTTTTCCAGG+TGG | - | chr3.4:69906942-69906961 | MS.gene031997:CDS | 45.0% |
| !! | AGAAGGCATGGAAGCATCAA+TGG | - | chr3.4:69908404-69908423 | MS.gene031997:intron | 45.0% |
| !! | CACTTTCTGGCTTGATCACT+GGG | - | chr3.4:69906414-69906433 | MS.gene031997:intron | 45.0% |
| !! | TTCATTAAAAAAATTATTAT+AGG | + | chr3.4:69906592-69906611 | None:intergenic | 5.0% |
| AAAGTGGCTGTCGCTAGATC+TGG | + | chr3.4:69906400-69906419 | None:intergenic | 50.0% | |
| AAGTGGCTGTCGCTAGATCT+GGG | + | chr3.4:69906399-69906418 | None:intergenic | 50.0% | |
| AATAGGCAACCACGAGCTTC+AGG | + | chr3.4:69907869-69907888 | None:intergenic | 50.0% | |
| ACAGGATTCACAACTGGAGG+GGG | - | chr3.4:69907602-69907621 | MS.gene031997:CDS | 50.0% | |
| ACTGGACTTGGAGTAACTGG+TGG | - | chr3.4:69907515-69907534 | MS.gene031997:intron | 50.0% | |
| ATGACGCGTTCAGCTTGATC+AGG | + | chr3.4:69905810-69905829 | None:intergenic | 50.0% | |
| CCAGTGATCAAGCCAGAAAG+TGG | + | chr3.4:69906416-69906435 | None:intergenic | 50.0% | |
| CCATGCCTTCTAAGTCAGAG+GGG | + | chr3.4:69908395-69908414 | None:intergenic | 50.0% | |
| CTCTTGGGAAACCCTCATCA+AGG | - | chr3.4:69906342-69906361 | MS.gene031997:intron | 50.0% | |
| GACGAGAGGATGAACCTTAG+CGG | + | chr3.4:69905754-69905773 | None:intergenic | 50.0% | |
| GAGCTTCAGGACACAAGCTT+CGG | + | chr3.4:69907856-69907875 | None:intergenic | 50.0% | |
| GATCAAGCTGAACGCGTCAT+TGG | - | chr3.4:69905810-69905829 | MS.gene031997:intron | 50.0% | |
| GCTTGTGAACGACAGCTTAC+AGG | - | chr3.4:69908643-69908662 | MS.gene031997:intron | 50.0% | |
| ! | ATCTAGCGACAGCCACTTTC+TGG | - | chr3.4:69906401-69906420 | MS.gene031997:intron | 50.0% |
| !! | AGCGGATAAGCTCTGAGAAG+AGG | + | chr3.4:69905736-69905755 | None:intergenic | 50.0% |
| !! | CCACTTTCTGGCTTGATCAC+TGG | - | chr3.4:69906413-69906432 | MS.gene031997:intron | 50.0% |
| ACTCTATGTCCAACGCCACC+TGG | + | chr3.4:69906960-69906979 | None:intergenic | 55.0% | |
| AGCTTGTGTCCTGAAGCTCG+TGG | - | chr3.4:69907857-69907876 | MS.gene031997:intron | 55.0% | |
| ATGTAGATGGAGGCGAGGGA+AGG | + | chr3.4:69905923-69905942 | None:intergenic | 55.0% | |
| CCCCTCTGACTTAGAAGGCA+TGG | - | chr3.4:69908392-69908411 | MS.gene031997:intron | 55.0% | |
| CGAGGGAAGGACCTGATCAA+CGG | + | chr3.4:69905910-69905929 | None:intergenic | 55.0% | |
| CGCGTCATTGGAACGCTTCT+TGG | - | chr3.4:69905822-69905841 | MS.gene031997:intron | 55.0% | |
| GTCCAACGCCACCTGGAAAA+AGG | + | chr3.4:69906953-69906972 | None:intergenic | 55.0% | |
| ! | GACCTTTTTCCAGGTGGCGT+TGG | - | chr3.4:69906948-69906967 | MS.gene031997:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 69905687 | 69908928 | 69905687 | ID=MS.gene031997 |
| chr3.4 | mRNA | 69905687 | 69908928 | 69905687 | ID=MS.gene031997.t1;Parent=MS.gene031997 |
| chr3.4 | exon | 69908698 | 69908928 | 69908698 | ID=MS.gene031997.t1.exon1;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69908698 | 69908928 | 69908698 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| chr3.4 | exon | 69907575 | 69907654 | 69907575 | ID=MS.gene031997.t1.exon2;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69907575 | 69907654 | 69907575 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| chr3.4 | exon | 69906878 | 69907107 | 69906878 | ID=MS.gene031997.t1.exon3;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69906878 | 69907107 | 69906878 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| chr3.4 | exon | 69906136 | 69906257 | 69906136 | ID=MS.gene031997.t1.exon4;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69906136 | 69906257 | 69906136 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| chr3.4 | exon | 69905951 | 69906064 | 69905951 | ID=MS.gene031997.t1.exon5;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69905951 | 69906064 | 69905951 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| chr3.4 | exon | 69905687 | 69905776 | 69905687 | ID=MS.gene031997.t1.exon6;Parent=MS.gene031997.t1 |
| chr3.4 | CDS | 69905687 | 69905776 | 69905687 | ID=cds.MS.gene031997.t1;Parent=MS.gene031997.t1 |
| Gene Sequence |
| Protein sequence |
