Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017884.t1 | RHN50194.1 | 97.9 | 381 | 8 | 0 | 1 | 381 | 1 | 381 | 2.10E-207 | 731.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017884.t1 | Q54KZ8 | 35.8 | 332 | 201 | 7 | 56 | 381 | 50 | 375 | 5.0e-53 | 209.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017884.t1 | A0A396HEF3 | 97.9 | 381 | 8 | 0 | 1 | 381 | 1 | 381 | 1.5e-207 | 731.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene80663 | MS.gene017884 | PPI |
MS.gene017884 | MS.gene045655 | PPI |
MS.gene017884 | MS.gene80792 | PPI |
MS.gene017884 | MS.gene37293 | PPI |
MS.gene017884 | MS.gene031997 | PPI |
MS.gene56673 | MS.gene017884 | PPI |
MS.gene017884 | MS.gene29609 | PPI |
MS.gene017884 | MS.gene39043 | PPI |
MS.gene018309 | MS.gene017884 | PPI |
MS.gene017884 | MS.gene057321 | PPI |
MS.gene42526 | MS.gene017884 | PPI |
MS.gene017884 | MS.gene014112 | PPI |
MS.gene017884 | MS.gene77710 | PPI |
MS.gene017884 | MS.gene85021 | PPI |
MS.gene017884 | MS.gene86150 | PPI |
MS.gene008080 | MS.gene017884 | PPI |
MS.gene72510 | MS.gene017884 | PPI |
MS.gene017884 | MS.gene018310 | PPI |
MS.gene017884 | MS.gene69249 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017884.t1 | MTR_6g015395 | 97.900 | 381 | 8 | 0 | 1 | 381 | 1 | 381 | 0.0 | 775 |
MS.gene017884.t1 | MTR_7g091480 | 97.644 | 382 | 9 | 0 | 1 | 382 | 1 | 382 | 0.0 | 770 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017884.t1 | AT5G15610 | 69.029 | 381 | 118 | 0 | 1 | 381 | 1 | 381 | 0.0 | 563 |
MS.gene017884.t1 | AT3G02200 | 66.404 | 381 | 128 | 0 | 1 | 381 | 1 | 381 | 0.0 | 549 |
MS.gene017884.t1 | AT5G15610 | 64.146 | 410 | 118 | 1 | 1 | 381 | 1 | 410 | 0.0 | 548 |
MS.gene017884.t1 | AT3G02200 | 66.574 | 359 | 120 | 0 | 1 | 359 | 1 | 359 | 0.0 | 513 |
Find 73 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATTCCTTATGAACTTATT+AGG | 0.125836 | 7.4:-17360036 | MS.gene017884:CDS |
CTGATATAACAGAGCATATT+TGG | 0.205824 | 7.4:+17360318 | None:intergenic |
TTCTTGAAAGAGTGGAAAAT+TGG | 0.210478 | 7.4:-17362471 | MS.gene017884:CDS |
TTCTCAAAAGTTTCTGAAAA+AGG | 0.225836 | 7.4:-17363195 | MS.gene017884:intron |
TAATAAGTTCATAAGGAATT+TGG | 0.226927 | 7.4:+17360038 | None:intergenic |
CAAGGCACCTGACGTATTTC+AGG | 0.229468 | 7.4:-17362070 | MS.gene017884:intron |
CTACATGAAGGCATTGAATT+TGG | 0.253476 | 7.4:-17362550 | MS.gene017884:CDS |
GATCAATTTGTATAATCTTT+TGG | 0.267985 | 7.4:-17362598 | MS.gene017884:CDS |
CATGTTGTAGTGTGATTTAC+TGG | 0.274248 | 7.4:-17360374 | MS.gene017884:intron |
TCGAAAATACCTGTATTATA+GGG | 0.294080 | 7.4:+17359536 | None:intergenic |
AATTCCTTATGAACTTATTA+GGG | 0.303697 | 7.4:-17360035 | MS.gene017884:CDS |
TCCACCTTGTTGAATGACTA+TGG | 0.306004 | 7.4:-17360235 | MS.gene017884:intron |
GGTTCGCCTCCGAGCTTGCC+TGG | 0.309812 | 7.4:-17363756 | MS.gene017884:CDS |
CAAGGACAACTTGATTCATT+TGG | 0.340745 | 7.4:+17359856 | None:intergenic |
ACAATCTCCATGACTTCATC+TGG | 0.341158 | 7.4:+17362776 | None:intergenic |
AGAAACAGCTCTCTCTGTTC+TGG | 0.342008 | 7.4:+17362444 | None:intergenic |
CATGCCTGCTGTTGGGCAAC+TGG | 0.343731 | 7.4:-17360350 | MS.gene017884:CDS |
TGAATCAAGTTGTCCTTGTT+AGG | 0.370330 | 7.4:-17359851 | MS.gene017884:intron |
ATGATGATGAAGTTGAACTA+TGG | 0.393896 | 7.4:-17359923 | MS.gene017884:CDS |
GCATTGAATTTGGCTGTTGA+TGG | 0.394749 | 7.4:-17362540 | MS.gene017884:CDS |
ACTTATTAGGGACACACTTC+AGG | 0.395673 | 7.4:-17360023 | MS.gene017884:intron |
TAGACATAAAACTGGCAGTA+TGG | 0.404837 | 7.4:+17362570 | None:intergenic |
TACTGGACATGCCTGCTGTT+GGG | 0.410514 | 7.4:-17360357 | MS.gene017884:CDS |
TCAAGTTAGCAGACTTTGCT+TGG | 0.414784 | 7.4:-17363292 | MS.gene017884:CDS |
AGGCAAGCTCGGAGGCGAAC+CGG | 0.429688 | 7.4:+17363758 | None:intergenic |
GAGCTTGCCTGGGCTGATGC+TGG | 0.434353 | 7.4:-17363745 | MS.gene017884:CDS |
CCTTCATGTAGACATAAAAC+TGG | 0.439865 | 7.4:+17362562 | None:intergenic |
GGCTGAAGAATTCATTGCTA+TGG | 0.447568 | 7.4:-17363268 | MS.gene017884:CDS |
ACACCGCTCTTTCCGTCGTC+CGG | 0.452655 | 7.4:-17363777 | MS.gene017884:CDS |
GATCTCAGCTCTGATGGATC+TGG | 0.452853 | 7.4:-17360061 | MS.gene017884:CDS |
TGCACGCATAGCTTCCTCCT+TGG | 0.457628 | 7.4:+17362107 | None:intergenic |
TTGGTTGATCTCAGCTCTGA+TGG | 0.460760 | 7.4:-17360067 | MS.gene017884:CDS |
GTGCAGTCATCACGCCGATC+GGG | 0.461911 | 7.4:-17359688 | MS.gene017884:intron |
TCTTGAAAGAGTGGAAAATT+GGG | 0.466987 | 7.4:-17362470 | MS.gene017884:CDS |
AGCATCAGCCCAGGCAAGCT+CGG | 0.471826 | 7.4:+17363747 | None:intergenic |
CATTGCTATGGGAAAGTGGT+TGG | 0.477727 | 7.4:-17363256 | MS.gene017884:CDS |
ATTGCAGATAATAGTGAAGA+TGG | 0.482900 | 7.4:+17362820 | None:intergenic |
GTGTCCCTAATAAGTTCATA+AGG | 0.487262 | 7.4:+17360031 | None:intergenic |
GTTCGCCTCCGAGCTTGCCT+GGG | 0.495623 | 7.4:-17363755 | MS.gene017884:CDS |
TTACTGGACATGCCTGCTGT+TGG | 0.496081 | 7.4:-17360358 | MS.gene017884:CDS |
TTCTCCAGTTGCCCAACAGC+AGG | 0.499064 | 7.4:+17360346 | None:intergenic |
TACATCTTCAATCGCACCGC+AGG | 0.502707 | 7.4:+17362710 | None:intergenic |
CAATGCATTCTTCATGCACA+AGG | 0.504463 | 7.4:+17360110 | None:intergenic |
TTCCTTCAAAACATTAGAGA+TGG | 0.510695 | 7.4:+17362419 | None:intergenic |
CTCGGGACCAGCATCAGCCC+AGG | 0.516732 | 7.4:+17363738 | None:intergenic |
TGTGCAGTCATCACGCCGAT+CGG | 0.518480 | 7.4:-17359689 | MS.gene017884:intron |
AGTAGGAACCACCGTGGTCA+TGG | 0.524671 | 7.4:+17363810 | None:intergenic |
GAACAAAGCTAGTGACTTGG+AGG | 0.528393 | 7.4:-17359635 | MS.gene017884:CDS |
AATTCATTGCTATGGGAAAG+TGG | 0.536465 | 7.4:-17363260 | MS.gene017884:CDS |
GCTGAAGAATTCATTGCTAT+GGG | 0.548812 | 7.4:-17363267 | MS.gene017884:CDS |
CAAGTTACCTGAAATACGTC+AGG | 0.554665 | 7.4:+17362063 | None:intergenic |
TGAGAATCCAGATGAAGTCA+TGG | 0.556784 | 7.4:-17362783 | MS.gene017884:CDS |
GCGGTGTCTTCTTCAGAAGT+AGG | 0.558291 | 7.4:+17363793 | None:intergenic |
AGTTAGCAGACTTTGCTTGG+AGG | 0.561124 | 7.4:-17363289 | MS.gene017884:CDS |
AAAGTTAATTGACTGTAAGA+TGG | 0.565834 | 7.4:-17359880 | MS.gene017884:CDS |
TCGATAGCTTCTTGAAAGAG+TGG | 0.566129 | 7.4:-17362479 | MS.gene017884:CDS |
TATGGGAAAGTGGTTGGAGC+TGG | 0.579039 | 7.4:-17363250 | MS.gene017884:CDS |
CTCGGAGGCGAACCGGACGA+CGG | 0.583026 | 7.4:+17363765 | None:intergenic |
TGATGATGAAGTTGAACTAT+GGG | 0.590069 | 7.4:-17359922 | MS.gene017884:CDS |
CTGGGCTGATGCTGGTCCCG+AGG | 0.590869 | 7.4:-17363737 | MS.gene017884:intron |
TGAGAACAAAGCTAGTGACT+TGG | 0.607952 | 7.4:-17359638 | MS.gene017884:CDS |
AAGCAAAGTCTGCTAACTTG+AGG | 0.611744 | 7.4:+17363294 | None:intergenic |
GAGATGCAACATACCTAACA+AGG | 0.623749 | 7.4:+17359838 | None:intergenic |
ACCATAGTCATTCAACAAGG+TGG | 0.643244 | 7.4:+17360234 | None:intergenic |
CGCACAAACAACCATGACCA+CGG | 0.649348 | 7.4:-17363821 | None:intergenic |
ATCAGCCCAGGCAAGCTCGG+AGG | 0.651917 | 7.4:+17363750 | None:intergenic |
AAGTAGCAAGATAATTGGTG+AGG | 0.654137 | 7.4:+17362163 | None:intergenic |
GAACCGGACGACGGAAAGAG+CGG | 0.669076 | 7.4:+17363774 | None:intergenic |
AACAAAGCTAGTGACTTGGA+GGG | 0.674755 | 7.4:-17359634 | MS.gene017884:intron |
GCAGCCAAATGAAAAGCCTG+CGG | 0.678328 | 7.4:-17362726 | MS.gene017884:CDS |
TTTACCATAGTCATTCAACA+AGG | 0.710598 | 7.4:+17360231 | None:intergenic |
ACAAACAACCATGACCACGG+TGG | 0.776258 | 7.4:-17363818 | None:intergenic |
TTCAGAAGTAGGAACCACCG+TGG | 0.790093 | 7.4:+17363804 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTAAAATATTTTTTA+GGG | + | chr7.4:17362602-17362621 | None:intergenic | 0.0% |
!!! | TATTTTTTAAAATATTTTTT+AGG | + | chr7.4:17362603-17362622 | None:intergenic | 0.0% |
!! | TTAATAAAAACATATAAATG+GGG | - | chr7.4:17362528-17362547 | MS.gene017884:CDS | 10.0% |
!! | TGAATTTATTAGTATTATCT+TGG | - | chr7.4:17360025-17360044 | MS.gene017884:CDS | 15.0% |
!!! | ATTTTAAAAAATAAGCAAGT+GGG | - | chr7.4:17362610-17362629 | MS.gene017884:intron | 15.0% |
!!! | GTTTTTTAATTGATACTTTT+AGG | - | chr7.4:17362415-17362434 | MS.gene017884:CDS | 15.0% |
!!! | TATAGCTACTAATTTTAAAA+AGG | + | chr7.4:17362250-17362269 | None:intergenic | 15.0% |
!!! | TATTTTAAAAAATAAGCAAG+TGG | - | chr7.4:17362609-17362628 | MS.gene017884:intron | 15.0% |
!!! | TATTTTTTTCTTCGTAAATT+CGG | - | chr7.4:17363602-17363621 | MS.gene017884:intron | 15.0% |
!!! | TTATACAAATTTACTTCTTT+TGG | - | chr7.4:17362393-17362412 | MS.gene017884:intron | 15.0% |
!! | AAACATAATATCTTCTCAAA+AGG | - | chr7.4:17361401-17361420 | MS.gene017884:intron | 20.0% |
!! | AAATTCCTTATGAACTTATT+AGG | - | chr7.4:17363323-17363342 | MS.gene017884:intron | 20.0% |
!! | AAATTGTCTTCAAAATATAC+AGG | - | chr7.4:17362333-17362352 | MS.gene017884:intron | 20.0% |
!! | AATAACTATGATTGAATGTA+GGG | + | chr7.4:17361368-17361387 | None:intergenic | 20.0% |
!! | AATTCCTTATGAACTTATTA+GGG | - | chr7.4:17363324-17363343 | MS.gene017884:intron | 20.0% |
!! | ATTATTTCATCAAACCATTT+AGG | + | chr7.4:17363219-17363238 | None:intergenic | 20.0% |
!! | TAATAACTATGATTGAATGT+AGG | + | chr7.4:17361369-17361388 | None:intergenic | 20.0% |
!! | TAATAAGTTCATAAGGAATT+TGG | + | chr7.4:17363324-17363343 | None:intergenic | 20.0% |
!! | TATTCTAAATTAACTGTACA+AGG | + | chr7.4:17360993-17361012 | None:intergenic | 20.0% |
!! | TCAGCAAAAAAACATAAAAA+TGG | + | chr7.4:17361568-17361587 | None:intergenic | 20.0% |
!!! | AACTTGTGTTTTATATACTT+TGG | - | chr7.4:17361537-17361556 | MS.gene017884:intron | 20.0% |
!!! | ATTATGAGTGATGAATTTTT+GGG | - | chr7.4:17360463-17360482 | MS.gene017884:intron | 20.0% |
!!! | ATTTTGTTTTTACTTCTCTT+TGG | - | chr7.4:17361012-17361031 | MS.gene017884:intron | 20.0% |
!!! | GAAAATGTGTTTGATTTAAT+GGG | - | chr7.4:17359736-17359755 | MS.gene017884:intron | 20.0% |
!!! | GATCAATTTGTATAATCTTT+TGG | - | chr7.4:17360761-17360780 | MS.gene017884:intron | 20.0% |
!!! | GTTTTGTATAAAAGTGAAAT+TGG | - | chr7.4:17359714-17359733 | MS.gene017884:intron | 20.0% |
!!! | TAGTAGCTATAGTAATTTTA+AGG | - | chr7.4:17362259-17362278 | MS.gene017884:intron | 20.0% |
!!! | TATTATGAGTGATGAATTTT+TGG | - | chr7.4:17360462-17360481 | MS.gene017884:intron | 20.0% |
!!! | TTGATGAAATAATGTTGTTT+AGG | - | chr7.4:17363226-17363245 | MS.gene017884:CDS | 20.0% |
!!! | TTGTATTTTTAAGCATTACT+TGG | + | chr7.4:17362571-17362590 | None:intergenic | 20.0% |
!!! | TTTTAAAAAATAAGCAAGTG+GGG | - | chr7.4:17362611-17362630 | MS.gene017884:intron | 20.0% |
! | AAAAAATAGAGAGAATTCTC+TGG | + | chr7.4:17361630-17361649 | None:intergenic | 25.0% |
! | AAAGTTAATTGACTGTAAGA+TGG | - | chr7.4:17363479-17363498 | MS.gene017884:intron | 25.0% |
! | AAATACTATTCAAGCACAAT+TGG | - | chr7.4:17363148-17363167 | MS.gene017884:intron | 25.0% |
! | AATAAAATAAGTAGTCACAG+TGG | + | chr7.4:17360716-17360735 | None:intergenic | 25.0% |
! | AATCTTTATAATCAGCAAGT+GGG | - | chr7.4:17362763-17362782 | MS.gene017884:CDS | 25.0% |
! | AGAAAAAGTAGCAAGATAAT+TGG | + | chr7.4:17361204-17361223 | None:intergenic | 25.0% |
! | ATAACTATGATTGAATGTAG+GGG | + | chr7.4:17361367-17361386 | None:intergenic | 25.0% |
! | ATGTAATATTACATCCTACT+TGG | - | chr7.4:17360667-17360686 | MS.gene017884:intron | 25.0% |
! | ATGTTTCACAGATAATTGAT+TGG | - | chr7.4:17360434-17360453 | MS.gene017884:intron | 25.0% |
! | CAGAACTGGATAATAAATTA+TGG | + | chr7.4:17360278-17360297 | None:intergenic | 25.0% |
! | CATTTCTCATCTATAATTTC+TGG | - | chr7.4:17363753-17363772 | MS.gene017884:CDS | 25.0% |
! | TAATCTTTATAATCAGCAAG+TGG | - | chr7.4:17362762-17362781 | MS.gene017884:CDS | 25.0% |
! | TACTTTACACCAATTTACTA+TGG | + | chr7.4:17360227-17360246 | None:intergenic | 25.0% |
! | TATCTGTGAAACATCAAATT+GGG | + | chr7.4:17360428-17360447 | None:intergenic | 25.0% |
! | TCAAAATTTCAAAACCAAGT+AGG | + | chr7.4:17360684-17360703 | None:intergenic | 25.0% |
! | TGAAAATTGTGTTTGTGATA+TGG | - | chr7.4:17359797-17359816 | MS.gene017884:intron | 25.0% |
! | TTAGTATTATTCAGATTCTG+AGG | - | chr7.4:17362850-17362869 | MS.gene017884:intron | 25.0% |
! | TTATCTGTGAAACATCAAAT+TGG | + | chr7.4:17360429-17360448 | None:intergenic | 25.0% |
!! | GGAAAATGTGTTTGATTTAA+TGG | - | chr7.4:17359735-17359754 | MS.gene017884:intron | 25.0% |
!! | TTCTCAAAAGTTTCTGAAAA+AGG | - | chr7.4:17360164-17360183 | MS.gene017884:intron | 25.0% |
!! | TTGAAAATGATTTTGCAACT+TGG | + | chr7.4:17361708-17361727 | None:intergenic | 25.0% |
!!! | AATTATCTTGCTACTTTTTC+TGG | - | chr7.4:17361203-17361222 | MS.gene017884:intron | 25.0% |
!!! | ATCCGGATATTTTAATAAGT+GGG | - | chr7.4:17362050-17362069 | MS.gene017884:intron | 25.0% |
!!! | ATGTTTTGAAGGAAAACAAA+AGG | - | chr7.4:17360949-17360968 | MS.gene017884:intron | 25.0% |
!!! | CTATTTTTCTCTTATAAGCA+AGG | - | chr7.4:17361508-17361527 | MS.gene017884:intron | 25.0% |
!!! | TAGAATTTTTGTTTGCCTAT+TGG | - | chr7.4:17361463-17361482 | MS.gene017884:intron | 25.0% |
!!! | TAGTATTATCTTGGTTTGTT+AGG | - | chr7.4:17360034-17360053 | MS.gene017884:CDS | 25.0% |
AAAAAATAGCTACAGCCATA+AGG | + | chr7.4:17363590-17363609 | None:intergenic | 30.0% | |
AAAAATGCGATTGATGTCAT+TGG | - | chr7.4:17363273-17363292 | MS.gene017884:CDS | 30.0% | |
AAATGACAGGATTAGAAAGA+TGG | - | chr7.4:17359949-17359968 | MS.gene017884:intron | 30.0% | |
ACCCCACTTATTAAAATATC+CGG | + | chr7.4:17362055-17362074 | None:intergenic | 30.0% | |
ACTACTTTGCCATAGTAAAT+TGG | - | chr7.4:17360215-17360234 | MS.gene017884:intron | 30.0% | |
ATTAAGCAGAAAAACAACTG+AGG | + | chr7.4:17360349-17360368 | None:intergenic | 30.0% | |
ATTGCAGATAATAGTGAAGA+TGG | + | chr7.4:17360542-17360561 | None:intergenic | 30.0% | |
CAATATTATGATTACTAGCG+AGG | + | chr7.4:17361984-17362003 | None:intergenic | 30.0% | |
CTGATATAACAGAGCATATT+TGG | + | chr7.4:17363044-17363063 | None:intergenic | 30.0% | |
TATCTTCTCAAAAGGTGATA+AGG | - | chr7.4:17361409-17361428 | MS.gene017884:intron | 30.0% | |
TCATCATCATTGATCTGAAA+GGG | + | chr7.4:17363426-17363445 | None:intergenic | 30.0% | |
TCTTGAAAGAGTGGAAAATT+GGG | - | chr7.4:17360889-17360908 | MS.gene017884:intron | 30.0% | |
TGCAGATAACAACATAAAAG+TGG | + | chr7.4:17361435-17361454 | None:intergenic | 30.0% | |
TTCATCATCATTGATCTGAA+AGG | + | chr7.4:17363427-17363446 | None:intergenic | 30.0% | |
TTCCTTCAAAACATTAGAGA+TGG | + | chr7.4:17360943-17360962 | None:intergenic | 30.0% | |
TTCTTGAAAGAGTGGAAAAT+TGG | - | chr7.4:17360888-17360907 | MS.gene017884:intron | 30.0% | |
TTTACCATAGTCATTCAACA+AGG | + | chr7.4:17363131-17363150 | None:intergenic | 30.0% | |
TTTATCCCGAGTCATAAATA+AGG | + | chr7.4:17362683-17362702 | None:intergenic | 30.0% | |
! | AACGTAAGTTTCGTGATTTT+GGG | - | chr7.4:17359646-17359665 | MS.gene017884:CDS | 30.0% |
! | ATGATGATGAAGTTGAACTA+TGG | - | chr7.4:17363436-17363455 | MS.gene017884:intron | 30.0% |
! | ATTATCCAGTTCTGATAGTT+CGG | - | chr7.4:17360284-17360303 | MS.gene017884:CDS | 30.0% |
! | CAAAAGTTTCTGAAAAAGGT+AGG | - | chr7.4:17360168-17360187 | MS.gene017884:intron | 30.0% |
! | CTATCGATCTTTTTGAATGA+AGG | + | chr7.4:17360867-17360886 | None:intergenic | 30.0% |
! | TAACGTAAGTTTCGTGATTT+TGG | - | chr7.4:17359645-17359664 | MS.gene017884:CDS | 30.0% |
! | TCAAGATTTTTCTTACTCAG+AGG | - | chr7.4:17363068-17363087 | MS.gene017884:intron | 30.0% |
! | TGATGATGAAGTTGAACTAT+GGG | - | chr7.4:17363437-17363456 | MS.gene017884:intron | 30.0% |
! | TTTTTATCTCAGCATGTCAA+AGG | - | chr7.4:17361160-17361179 | MS.gene017884:intron | 30.0% |
!!! | GATCCGGATATTTTAATAAG+TGG | - | chr7.4:17362049-17362068 | MS.gene017884:intron | 30.0% |
!!! | TATTTTAATAAGTGGGGTTG+AGG | - | chr7.4:17362057-17362076 | MS.gene017884:intron | 30.0% |
!!! | TCCGGATATTTTAATAAGTG+GGG | - | chr7.4:17362051-17362070 | MS.gene017884:intron | 30.0% |
!!! | TGCAATTGTTGATTTTGTCA+AGG | - | chr7.4:17361271-17361290 | MS.gene017884:intron | 30.0% |
!!! | TTTTTACTTCTCTTTGGAGT+AGG | - | chr7.4:17361018-17361037 | MS.gene017884:intron | 30.0% |
AAAAAATAAGCAAGTGGGGT+CGG | - | chr7.4:17362615-17362634 | MS.gene017884:intron | 35.0% | |
AAGTAGCAAGATAATTGGTG+AGG | + | chr7.4:17361199-17361218 | None:intergenic | 35.0% | |
AATTCATTGCTATGGGAAAG+TGG | - | chr7.4:17360099-17360118 | MS.gene017884:CDS | 35.0% | |
AGAAAGATGGTATTTGTGAG+CGG | - | chr7.4:17359962-17359981 | MS.gene017884:intron | 35.0% | |
ATAATAGTGTGTTGCATGCA+GGG | - | chr7.4:17362023-17362042 | MS.gene017884:intron | 35.0% | |
ATATATGACTACTGACCGAA+TGG | + | chr7.4:17361086-17361105 | None:intergenic | 35.0% | |
CAAGGACAACTTGATTCATT+TGG | + | chr7.4:17363506-17363525 | None:intergenic | 35.0% | |
CATGTTGTAGTGTGATTTAC+TGG | - | chr7.4:17362985-17363004 | MS.gene017884:intron | 35.0% | |
CCTTCATGTAGACATAAAAC+TGG | + | chr7.4:17360800-17360819 | None:intergenic | 35.0% | |
GCTGAAGAATTCATTGCTAT+GGG | - | chr7.4:17360092-17360111 | MS.gene017884:CDS | 35.0% | |
GCTTAATGATGTTGTATCTG+TGG | - | chr7.4:17360362-17360381 | MS.gene017884:CDS | 35.0% | |
GGACATGTGATTGAATATAG+TGG | + | chr7.4:17362229-17362248 | None:intergenic | 35.0% | |
GTGTCCCTAATAAGTTCATA+AGG | + | chr7.4:17363331-17363350 | None:intergenic | 35.0% | |
GTGTTAAGACTTGAAATGAC+AGG | - | chr7.4:17359936-17359955 | MS.gene017884:intron | 35.0% | |
GTTGAGTCACAAAAAGAAAG+AGG | + | chr7.4:17361851-17361870 | None:intergenic | 35.0% | |
TAGACATAAAACTGGCAGTA+TGG | + | chr7.4:17360792-17360811 | None:intergenic | 35.0% | |
TATATGACTACTGACCGAAT+GGG | + | chr7.4:17361085-17361104 | None:intergenic | 35.0% | |
! | ACGTAAGTTTCGTGATTTTG+GGG | - | chr7.4:17359647-17359666 | MS.gene017884:CDS | 35.0% |
! | AGGTAACTTGTGTAATAGTG+AGG | - | chr7.4:17361309-17361328 | MS.gene017884:intron | 35.0% |
! | TGAATCAAGTTGTCCTTGTT+AGG | - | chr7.4:17363508-17363527 | MS.gene017884:intron | 35.0% |
!! | AAATGATGCTGTGTTGTTTG+TGG | - | chr7.4:17359822-17359841 | MS.gene017884:intron | 35.0% |
!! | CACCATCTCTAATGTTTTGA+AGG | - | chr7.4:17360938-17360957 | MS.gene017884:intron | 35.0% |
!! | CCAGTTTTATGTCTACATGA+AGG | - | chr7.4:17360797-17360816 | MS.gene017884:intron | 35.0% |
!! | CTACATGAAGGCATTGAATT+TGG | - | chr7.4:17360809-17360828 | MS.gene017884:intron | 35.0% |
!! | TTGCTGCCTTATTTATGACT+CGG | - | chr7.4:17362674-17362693 | MS.gene017884:intron | 35.0% |
AAGCAAAGTCTGCTAACTTG+AGG | + | chr7.4:17360068-17360087 | None:intergenic | 40.0% | |
ACAATCTCCATGACTTCATC+TGG | + | chr7.4:17360586-17360605 | None:intergenic | 40.0% | |
ACACTGAAGAACAGAGATTG+AGG | + | chr7.4:17361114-17361133 | None:intergenic | 40.0% | |
ACCATAGTCATTCAACAAGG+TGG | + | chr7.4:17363128-17363147 | None:intergenic | 40.0% | |
ACCATTCCTAGTCTCTCTTA+TGG | + | chr7.4:17361937-17361956 | None:intergenic | 40.0% | |
ACTTATTAGGGACACACTTC+AGG | - | chr7.4:17363336-17363355 | MS.gene017884:intron | 40.0% | |
AGACACTACAAGACGATAGA+CGG | + | chr7.4:17361490-17361509 | None:intergenic | 40.0% | |
CAAGTTACCTGAAATACGTC+AGG | + | chr7.4:17361299-17361318 | None:intergenic | 40.0% | |
CAATGCATTCTTCATGCACA+AGG | + | chr7.4:17363252-17363271 | None:intergenic | 40.0% | |
CATAATAGTGTGTTGCATGC+AGG | - | chr7.4:17362022-17362041 | MS.gene017884:intron | 40.0% | |
CATAGCTTCATGGCACATAA+TGG | + | chr7.4:17361960-17361979 | None:intergenic | 40.0% | |
CATCAAATTGGGTTCCTAAC+TGG | + | chr7.4:17360417-17360436 | None:intergenic | 40.0% | |
CCATTTAGGTAGAAACACAG+TGG | + | chr7.4:17363205-17363224 | None:intergenic | 40.0% | |
CTATGATTGAATGTAGGGGA+CGG | + | chr7.4:17361363-17361382 | None:intergenic | 40.0% | |
CTCTAGGCATCAAAGAAAAC+TGG | + | chr7.4:17361909-17361928 | None:intergenic | 40.0% | |
CTTAGGGAATGTGAAAGTTG+AGG | - | chr7.4:17359845-17359864 | MS.gene017884:intron | 40.0% | |
GAGATGCAACATACCTAACA+AGG | + | chr7.4:17363524-17363543 | None:intergenic | 40.0% | |
GAGTCATAAATAAGGCAGCA+AGG | + | chr7.4:17362675-17362694 | None:intergenic | 40.0% | |
GCATTGAATTTGGCTGTTGA+TGG | - | chr7.4:17360819-17360838 | MS.gene017884:intron | 40.0% | |
GGCTGAAGAATTCATTGCTA+TGG | - | chr7.4:17360091-17360110 | MS.gene017884:CDS | 40.0% | |
TCAAGTTAGCAGACTTTGCT+TGG | - | chr7.4:17360067-17360086 | MS.gene017884:CDS | 40.0% | |
TCACGAAACTTACGTTACCT+CGG | + | chr7.4:17359642-17359661 | None:intergenic | 40.0% | |
TCATAGTTATTAGTCGCAGC+TGG | - | chr7.4:17361377-17361396 | MS.gene017884:intron | 40.0% | |
TCCACCTTGTTGAATGACTA+TGG | - | chr7.4:17363124-17363143 | MS.gene017884:intron | 40.0% | |
TCGATAGCTTCTTGAAAGAG+TGG | - | chr7.4:17360880-17360899 | MS.gene017884:intron | 40.0% | |
TGAGAAACCAGAAAGAGAAG+AGG | + | chr7.4:17361812-17361831 | None:intergenic | 40.0% | |
TGAGAACAAAGCTAGTGACT+TGG | - | chr7.4:17363721-17363740 | MS.gene017884:intron | 40.0% | |
TGAGAATCCAGATGAAGTCA+TGG | - | chr7.4:17360576-17360595 | MS.gene017884:intron | 40.0% | |
TTCAACCGAACTATCAGAAC+TGG | + | chr7.4:17360292-17360311 | None:intergenic | 40.0% | |
TTGGAAAAGATGTGTCGCAA+AGG | + | chr7.4:17361774-17361793 | None:intergenic | 40.0% | |
TTTCTTTGATGCCTAGAGTG+AGG | - | chr7.4:17361911-17361930 | MS.gene017884:intron | 40.0% | |
! | AACAAAGCTAGTGACTTGGA+GGG | - | chr7.4:17363725-17363744 | MS.gene017884:intron | 40.0% |
! | AATTTTCACAGCGATTCCAC+TGG | + | chr7.4:17361602-17361621 | None:intergenic | 40.0% |
! | CCACTGTGTTTCTACCTAAA+TGG | - | chr7.4:17363202-17363221 | MS.gene017884:CDS | 40.0% |
! | GCAGCGTTGAATATTCTCTA+GGG | - | chr7.4:17362936-17362955 | MS.gene017884:intron | 40.0% |
! | GCGTTTTTCACTTTCCAGTT+AGG | - | chr7.4:17360400-17360419 | MS.gene017884:intron | 40.0% |
! | TGCAGCGTTGAATATTCTCT+AGG | - | chr7.4:17362935-17362954 | MS.gene017884:intron | 40.0% |
! | TGTGTGTGTGTGTGTGTTTT+TGG | - | chr7.4:17361672-17361691 | MS.gene017884:intron | 40.0% |
!! | GTTTCGTGATTTTGGGGATT+TGG | - | chr7.4:17359653-17359672 | MS.gene017884:CDS | 40.0% |
!! | TGCTGCCTTATTTATGACTC+GGG | - | chr7.4:17362675-17362694 | MS.gene017884:intron | 40.0% |
!!! | TGCTACTTTTTCTGGAGAAG+AGG | - | chr7.4:17361211-17361230 | MS.gene017884:intron | 40.0% |
!!! | TTGGGGATTTGGTTGGTTTT+GGG | - | chr7.4:17359664-17359683 | MS.gene017884:CDS | 40.0% |
!!! | TTTGGGGATTTGGTTGGTTT+TGG | - | chr7.4:17359663-17359682 | MS.gene017884:CDS | 40.0% |
AAGACGATAGACGGTCCAAT+AGG | + | chr7.4:17361481-17361500 | None:intergenic | 45.0% | |
AGAAACAGCTCTCTCTGTTC+TGG | + | chr7.4:17360918-17360937 | None:intergenic | 45.0% | |
AGAAAGAGAAGAGGCTGCAA+CGG | + | chr7.4:17361803-17361822 | None:intergenic | 45.0% | |
AGTTAGCAGACTTTGCTTGG+AGG | - | chr7.4:17360070-17360089 | MS.gene017884:CDS | 45.0% | |
ATGCTGACCAAAAACCCGAT+CGG | + | chr7.4:17363688-17363707 | None:intergenic | 45.0% | |
CACGAAACTTACGTTACCTC+GGG | + | chr7.4:17359641-17359660 | None:intergenic | 45.0% | |
CATCAGTCTCACTACCCATT+CGG | - | chr7.4:17361068-17361087 | MS.gene017884:intron | 45.0% | |
CATTGCTATGGGAAAGTGGT+TGG | - | chr7.4:17360103-17360122 | MS.gene017884:CDS | 45.0% | |
GAAGAACAGAGATTGAGGTG+TGG | + | chr7.4:17361109-17361128 | None:intergenic | 45.0% | |
GCATGTAGACATGCACCTTA+TGG | - | chr7.4:17363572-17363591 | MS.gene017884:intron | 45.0% | |
GCCATAAGAGAGACTAGGAA+TGG | - | chr7.4:17361933-17361952 | MS.gene017884:intron | 45.0% | |
! | GAACAAAGCTAGTGACTTGG+AGG | - | chr7.4:17363724-17363743 | MS.gene017884:intron | 45.0% |
! | GTGAAGATGGACTCTACATC+TGG | + | chr7.4:17360529-17360548 | None:intergenic | 45.0% |
! | TTGGTTGATCTCAGCTCTGA+TGG | - | chr7.4:17363292-17363311 | MS.gene017884:CDS | 45.0% |
!! | CGTGATTTTGGGGATTTGGT+TGG | - | chr7.4:17359657-17359676 | MS.gene017884:CDS | 45.0% |
!! | GCATGTTTTGAGTGAAGCCA+AGG | - | chr7.4:17361235-17361254 | MS.gene017884:intron | 45.0% |
!! | GCTGTGTTGTTTGTGGCTTA+GGG | - | chr7.4:17359829-17359848 | MS.gene017884:intron | 45.0% |
!! | TGCTGTGTTGTTTGTGGCTT+AGG | - | chr7.4:17359828-17359847 | MS.gene017884:intron | 45.0% |
!! | TGTTTTGAGTGAAGCCAAGG+AGG | - | chr7.4:17361238-17361257 | MS.gene017884:intron | 45.0% |
!!! | GGGTTTTTGGTCAGCATCAA+TGG | - | chr7.4:17363691-17363710 | MS.gene017884:intron | 45.0% |
!!! | TGGGGATTTGGTTGGTTTTG+GGG | - | chr7.4:17359665-17359684 | MS.gene017884:CDS | 45.0% |
!! | TTTAATAAAAACATATAAAT+GGG | - | chr7.4:17362527-17362546 | MS.gene017884:CDS | 5.0% |
!!! | ATTTATATGTTTTTATTAAA+AGG | + | chr7.4:17362527-17362546 | None:intergenic | 5.0% |
!!! | TTTTAATAAAAACATATAAA+TGG | - | chr7.4:17362526-17362545 | MS.gene017884:CDS | 5.0% |
!!! | TTTTTTAAAATATTTTTTAG+GGG | + | chr7.4:17362601-17362620 | None:intergenic | 5.0% |
CTAGCGAGGTCATAGCTTCA+TGG | + | chr7.4:17361970-17361989 | None:intergenic | 50.0% | |
CTCTCTTATGGCCTCACTCT+AGG | + | chr7.4:17361925-17361944 | None:intergenic | 50.0% | |
GCAGCCAAATGAAAAGCCTG+CGG | - | chr7.4:17360633-17360652 | MS.gene017884:intron | 50.0% | |
GCGGTGTCTTCTTCAGAAGT+AGG | + | chr7.4:17359569-17359588 | None:intergenic | 50.0% | |
GCTGAGAGATTCCAAACCAG+TGG | - | chr7.4:17361583-17361602 | MS.gene017884:intron | 50.0% | |
GTGAGGCCATAAGAGAGACT+AGG | - | chr7.4:17361928-17361947 | MS.gene017884:intron | 50.0% | |
GTTGCAGCCTCTTCTCTTTC+TGG | - | chr7.4:17361802-17361821 | MS.gene017884:intron | 50.0% | |
TACATCTTCAATCGCACCGC+AGG | + | chr7.4:17360652-17360671 | None:intergenic | 50.0% | |
TACTGGACATGCCTGCTGTT+GGG | - | chr7.4:17363002-17363021 | MS.gene017884:intron | 50.0% | |
TAGTGTGTTGCATGCAGGGA+CGG | - | chr7.4:17362027-17362046 | MS.gene017884:intron | 50.0% | |
TATGGGAAAGTGGTTGGAGC+TGG | - | chr7.4:17360109-17360128 | MS.gene017884:CDS | 50.0% | |
TTACTGGACATGCCTGCTGT+TGG | - | chr7.4:17363001-17363020 | MS.gene017884:intron | 50.0% | |
TTCAGAAGTAGGAACCACCG+TGG | + | chr7.4:17359558-17359577 | None:intergenic | 50.0% | |
! | CAAGGCACCTGACGTATTTC+AGG | - | chr7.4:17361289-17361308 | MS.gene017884:intron | 50.0% |
! | GATCTCAGCTCTGATGGATC+TGG | - | chr7.4:17363298-17363317 | MS.gene017884:CDS | 50.0% |
! | TCACAGCGATTCCACTGGTT+TGG | + | chr7.4:17361597-17361616 | None:intergenic | 50.0% |
AACCAGGCACGGATAGAGTG+TGG | + | chr7.4:17362647-17362666 | None:intergenic | 55.0% | |
ACCAGGCACGGATAGAGTGT+GGG | + | chr7.4:17362646-17362665 | None:intergenic | 55.0% | |
AGGCAGCAAGGTATGCAACC+AGG | + | chr7.4:17362663-17362682 | None:intergenic | 55.0% | |
GAGGCTGCAACGGAGAGAAT+TGG | + | chr7.4:17361793-17361812 | None:intergenic | 55.0% | |
GCAAGGTATGCAACCAGGCA+CGG | + | chr7.4:17362658-17362677 | None:intergenic | 55.0% | |
TGCACGCATAGCTTCCTCCT+TGG | + | chr7.4:17361255-17361274 | None:intergenic | 55.0% | |
TGTGCAGTCATCACGCCGAT+CGG | - | chr7.4:17363670-17363689 | MS.gene017884:intron | 55.0% | |
TTCTCCAGTTGCCCAACAGC+AGG | + | chr7.4:17363016-17363035 | None:intergenic | 55.0% | |
! | CATCACGCCGATCGGGTTTT+TGG | - | chr7.4:17363678-17363697 | MS.gene017884:intron | 55.0% |
! | CGCACCGCAGGCTTTTCATT+TGG | + | chr7.4:17360640-17360659 | None:intergenic | 55.0% |
ACACCGCTCTTTCCGTCGTC+CGG | - | chr7.4:17359582-17359601 | MS.gene017884:intron | 60.0% | |
AGAGACGCGACAGGGAGAAG+GGG | + | chr7.4:17361751-17361770 | None:intergenic | 60.0% | |
AGCATCAGCCCAGGCAAGCT+CGG | + | chr7.4:17359615-17359634 | None:intergenic | 60.0% | |
CATGCCTGCTGTTGGGCAAC+TGG | - | chr7.4:17363009-17363028 | MS.gene017884:intron | 60.0% | |
CCAGGCACGGATAGAGTGTG+GGG | + | chr7.4:17362645-17362664 | None:intergenic | 60.0% | |
CGCAAAGGAGAGACGCGACA+GGG | + | chr7.4:17361759-17361778 | None:intergenic | 60.0% | |
GAACCGGACGACGGAAAGAG+CGG | + | chr7.4:17359588-17359607 | None:intergenic | 60.0% | |
GAGAGACGCGACAGGGAGAA+GGG | + | chr7.4:17361752-17361771 | None:intergenic | 60.0% | |
GTGCAGTCATCACGCCGATC+GGG | - | chr7.4:17363671-17363690 | MS.gene017884:intron | 60.0% | |
GTTGCATGCAGGGACGGATC+CGG | - | chr7.4:17362033-17362052 | MS.gene017884:intron | 60.0% | |
TCGCAAAGGAGAGACGCGAC+AGG | + | chr7.4:17361760-17361779 | None:intergenic | 60.0% | |
AGGCAAGCTCGGAGGCGAAC+CGG | + | chr7.4:17359604-17359623 | None:intergenic | 65.0% | |
ATCAGCCCAGGCAAGCTCGG+AGG | + | chr7.4:17359612-17359631 | None:intergenic | 65.0% | |
CCCCACACTCTATCCGTGCC+TGG | - | chr7.4:17362642-17362661 | MS.gene017884:intron | 65.0% | |
GAGCTTGCCTGGGCTGATGC+TGG | - | chr7.4:17359614-17359633 | MS.gene017884:intron | 65.0% | |
GGAGAGACGCGACAGGGAGA+AGG | + | chr7.4:17361753-17361772 | None:intergenic | 65.0% | |
GTTCGCCTCCGAGCTTGCCT+GGG | - | chr7.4:17359604-17359623 | MS.gene017884:intron | 65.0% | |
CTCGGAGGCGAACCGGACGA+CGG | + | chr7.4:17359597-17359616 | None:intergenic | 70.0% | |
CTCGGGACCAGCATCAGCCC+AGG | + | chr7.4:17359624-17359643 | None:intergenic | 70.0% | |
CTGGGCTGATGCTGGTCCCG+AGG | - | chr7.4:17359622-17359641 | MS.gene017884:intron | 70.0% | |
GGTTCGCCTCCGAGCTTGCC+TGG | - | chr7.4:17359603-17359622 | MS.gene017884:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 17359551 | 17363830 | 17359551 | ID=MS.gene017884 |
chr7.4 | mRNA | 17359551 | 17363830 | 17359551 | ID=MS.gene017884.t1;Parent=MS.gene017884 |
chr7.4 | exon | 17363738 | 17363830 | 17363738 | ID=MS.gene017884.t1.exon1;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17363738 | 17363830 | 17363738 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17363196 | 17363325 | 17363196 | ID=MS.gene017884.t1.exon2;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17363196 | 17363325 | 17363196 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17362713 | 17362851 | 17362713 | ID=MS.gene017884.t1.exon3;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17362713 | 17362851 | 17362713 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17362411 | 17362623 | 17362411 | ID=MS.gene017884.t1.exon4;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17362411 | 17362623 | 17362411 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17362071 | 17362209 | 17362071 | ID=MS.gene017884.t1.exon5;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17362071 | 17362209 | 17362071 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17360236 | 17360386 | 17360236 | ID=MS.gene017884.t1.exon6;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17360236 | 17360386 | 17360236 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17360024 | 17360133 | 17360024 | ID=MS.gene017884.t1.exon7;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17360024 | 17360133 | 17360024 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17359852 | 17359949 | 17359852 | ID=MS.gene017884.t1.exon8;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17359852 | 17359949 | 17359852 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17359635 | 17359704 | 17359635 | ID=MS.gene017884.t1.exon9;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17359635 | 17359704 | 17359635 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
chr7.4 | exon | 17359551 | 17359577 | 17359551 | ID=MS.gene017884.t1.exon10;Parent=MS.gene017884.t1 |
chr7.4 | CDS | 17359551 | 17359577 | 17359551 | ID=cds.MS.gene017884.t1;Parent=MS.gene017884.t1 |
Gene Sequence |
Protein sequence |