Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42526.t1 | RHN50194.1 | 97.6 | 381 | 9 | 0 | 1 | 381 | 1 | 381 | 2.30E-206 | 728 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42526.t1 | Q54KZ8 | 35.8 | 332 | 201 | 7 | 56 | 381 | 50 | 375 | 1.9e-52 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42526.t1 | A0A396HEF3 | 97.6 | 381 | 9 | 0 | 1 | 381 | 1 | 381 | 1.6e-206 | 728.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene42526 | 0.808821 | 2.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42526 | MS.gene057321 | PPI |
| MS.gene018309 | MS.gene42526 | PPI |
| MS.gene42526 | MS.gene72510 | PPI |
| MS.gene42526 | MS.gene77710 | PPI |
| MS.gene42526 | MS.gene85021 | PPI |
| MS.gene42526 | MS.gene86150 | PPI |
| MS.gene42526 | MS.gene045655 | PPI |
| MS.gene42526 | MS.gene018310 | PPI |
| MS.gene008080 | MS.gene42526 | PPI |
| MS.gene42526 | MS.gene69249 | PPI |
| MS.gene42526 | MS.gene017884 | PPI |
| MS.gene80663 | MS.gene42526 | PPI |
| MS.gene56673 | MS.gene42526 | PPI |
| MS.gene42526 | MS.gene80792 | PPI |
| MS.gene42526 | MS.gene37293 | PPI |
| MS.gene42526 | MS.gene031997 | PPI |
| MS.gene42526 | MS.gene29609 | PPI |
| MS.gene42526 | MS.gene014112 | PPI |
| MS.gene42526 | MS.gene018309 | PPI |
| MS.gene42526 | MS.gene39043 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42526.t1 | MTR_6g015395 | 97.638 | 381 | 9 | 0 | 1 | 381 | 1 | 381 | 0.0 | 771 |
| MS.gene42526.t1 | MTR_7g091480 | 97.644 | 382 | 9 | 0 | 1 | 382 | 1 | 382 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42526.t1 | AT5G15610 | 68.766 | 381 | 119 | 0 | 1 | 381 | 1 | 381 | 0.0 | 559 |
| MS.gene42526.t1 | AT3G02200 | 66.142 | 381 | 129 | 0 | 1 | 381 | 1 | 381 | 0.0 | 544 |
| MS.gene42526.t1 | AT5G15610 | 63.902 | 410 | 119 | 1 | 1 | 381 | 1 | 410 | 0.0 | 543 |
| MS.gene42526.t1 | AT3G02200 | 66.295 | 359 | 121 | 0 | 1 | 359 | 1 | 359 | 0.0 | 508 |
Find 72 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTTGTGAACTTATT+AGG | 0.101838 | 7.1:+16022860 | MS.gene42526:CDS |
| CTGATATAACAGAGCATATT+TGG | 0.205824 | 7.1:-16022578 | None:intergenic |
| TTCTTGAAAGAGTGGAAAAT+TGG | 0.210478 | 7.1:+16021524 | MS.gene42526:CDS |
| TTCTCAAAAGTTTCTGAAAA+AGG | 0.225836 | 7.1:+16020800 | MS.gene42526:CDS |
| TAATAAGTTCACAAGGAATT+TGG | 0.228042 | 7.1:-16022858 | None:intergenic |
| CAAGGCACCTGACGTATTTC+AGG | 0.229468 | 7.1:+16021925 | MS.gene42526:CDS |
| CTACATGAAGGCATTGAATT+TGG | 0.253476 | 7.1:+16021445 | MS.gene42526:CDS |
| GATCAATTTGTATAATCTTT+TGG | 0.267985 | 7.1:+16021397 | MS.gene42526:CDS |
| CATGTTGTAGTGTGATTTAC+TGG | 0.274248 | 7.1:+16022522 | MS.gene42526:intron |
| AATTCCTTGTGAACTTATTA+GGG | 0.284891 | 7.1:+16022861 | MS.gene42526:CDS |
| TCGAAAATACCTGTATTATA+GGG | 0.294080 | 7.1:-16023360 | None:intergenic |
| TCCACCTTGTTGAATGACTA+TGG | 0.306004 | 7.1:+16022661 | MS.gene42526:CDS |
| GGTTCGCCTCCGAGCTTGCC+TGG | 0.309812 | 7.1:+16020247 | MS.gene42526:CDS |
| CAAGGACAACTTGATTCATT+TGG | 0.340745 | 7.1:-16023040 | None:intergenic |
| ACAATCTCCATGACTTCATC+TGG | 0.341158 | 7.1:-16021219 | None:intergenic |
| AGAAACAGCTCTCTCTGTTC+TGG | 0.342008 | 7.1:-16021551 | None:intergenic |
| CATGCCTGCTGTTGGGCAAC+TGG | 0.343731 | 7.1:+16022546 | MS.gene42526:CDS |
| TGAATCAAGTTGTCCTTGTT+AGG | 0.370330 | 7.1:+16023045 | MS.gene42526:CDS |
| ATGATGATGAAGTTGAACTA+TGG | 0.393896 | 7.1:+16022973 | MS.gene42526:CDS |
| GCATTGAATTTGGCTGTTGA+TGG | 0.394749 | 7.1:+16021455 | MS.gene42526:CDS |
| ACTTATTAGGGACACACTTC+AGG | 0.395673 | 7.1:+16022873 | MS.gene42526:CDS |
| TAGACATAAAACTGGCAGTA+TGG | 0.404837 | 7.1:-16021425 | None:intergenic |
| TACTGGACATGCCTGCTGTT+GGG | 0.410514 | 7.1:+16022539 | MS.gene42526:CDS |
| GACTGAAGAATTCATTGCTA+TGG | 0.417788 | 7.1:+16020727 | MS.gene42526:CDS |
| TCAAGTTAGCAGACTTTGCT+TGG | 0.422910 | 7.1:+16020703 | MS.gene42526:CDS |
| AGGCAAGCTCGGAGGCGAAC+CGG | 0.429688 | 7.1:-16020245 | None:intergenic |
| GAGCTTGCCTGGGCTGATGC+TGG | 0.434353 | 7.1:+16020258 | MS.gene42526:CDS |
| CCTTCATGTAGACATAAAAC+TGG | 0.439865 | 7.1:-16021433 | None:intergenic |
| ACACCGCTCTTTCCGTCGTC+CGG | 0.452655 | 7.1:+16020226 | MS.gene42526:CDS |
| GATCTCAGCTCTGATGGATC+TGG | 0.452853 | 7.1:+16022835 | MS.gene42526:CDS |
| TGCACGCACAGCTTCCTCCT+TGG | 0.458877 | 7.1:-16021888 | None:intergenic |
| TTGGTTGATCTCAGCTCTGA+TGG | 0.460760 | 7.1:+16022829 | MS.gene42526:CDS |
| GTGCAGTCATCACGCCGATC+GGG | 0.461911 | 7.1:+16023208 | MS.gene42526:intron |
| TCTTGAAAGAGTGGAAAATT+GGG | 0.466987 | 7.1:+16021525 | MS.gene42526:CDS |
| AGCATCAGCCCAGGCAAGCT+CGG | 0.471826 | 7.1:-16020256 | None:intergenic |
| CATTGCTATGGGAAAGTGGT+TGG | 0.477727 | 7.1:+16020739 | MS.gene42526:CDS |
| ATTGCAGATAATAGTGAAGA+TGG | 0.482900 | 7.1:-16021175 | None:intergenic |
| GTTCGCCTCCGAGCTTGCCT+GGG | 0.495623 | 7.1:+16020248 | MS.gene42526:CDS |
| TTACTGGACATGCCTGCTGT+TGG | 0.496081 | 7.1:+16022538 | MS.gene42526:CDS |
| TTCTCCAGTTGCCCAACAGC+AGG | 0.499064 | 7.1:-16022550 | None:intergenic |
| TACATCTTCAATCGCACCGC+AGG | 0.502707 | 7.1:-16021285 | None:intergenic |
| CAATGCATTCTTCATGCACA+AGG | 0.504463 | 7.1:-16022786 | None:intergenic |
| TTCCTTCAAAACATTAGAGA+TGG | 0.510695 | 7.1:-16021576 | None:intergenic |
| CTCGGGACCAGCATCAGCCC+AGG | 0.516732 | 7.1:-16020265 | None:intergenic |
| TGTGCAGTCATCACGCCGAT+CGG | 0.518480 | 7.1:+16023207 | MS.gene42526:intron |
| AGTAGGAACCACCGTGGTCA+TGG | 0.524671 | 7.1:-16020193 | None:intergenic |
| ACTGAAGAATTCATTGCTAT+GGG | 0.526273 | 7.1:+16020728 | MS.gene42526:CDS |
| GAACAAAGCTAGTGACTTGG+AGG | 0.528393 | 7.1:+16023261 | MS.gene42526:CDS |
| AATTCATTGCTATGGGAAAG+TGG | 0.536465 | 7.1:+16020735 | MS.gene42526:CDS |
| CAAGTTACCTGAAATACGTC+AGG | 0.554665 | 7.1:-16021932 | None:intergenic |
| TGAGAATCCAGATGAAGTCA+TGG | 0.556784 | 7.1:+16021212 | MS.gene42526:CDS |
| GCGGTGTCTTCTTCAGAAGT+AGG | 0.558291 | 7.1:-16020210 | None:intergenic |
| AAAGTTAATTGACTGTAAGA+TGG | 0.565834 | 7.1:+16023016 | MS.gene42526:CDS |
| TCGATAGCTTCTTGAAAGAG+TGG | 0.566129 | 7.1:+16021516 | MS.gene42526:CDS |
| TATGGGAAAGTGGTTGGAGC+TGG | 0.579039 | 7.1:+16020745 | MS.gene42526:CDS |
| CTCGGAGGCGAACCGGACGA+CGG | 0.583026 | 7.1:-16020238 | None:intergenic |
| TGATGATGAAGTTGAACTAT+GGG | 0.590069 | 7.1:+16022974 | MS.gene42526:CDS |
| CTGGGCTGATGCTGGTCCCG+AGG | 0.590869 | 7.1:+16020266 | MS.gene42526:CDS |
| AAGCAAAGTCTGCTAACTTG+AGG | 0.598031 | 7.1:-16020701 | None:intergenic |
| TGAGAACAAAGCTAGTGACT+TGG | 0.607952 | 7.1:+16023258 | MS.gene42526:CDS |
| GAGATGCAACATACCTAACA+AGG | 0.623749 | 7.1:-16023058 | None:intergenic |
| ACCATAGTCATTCAACAAGG+TGG | 0.643244 | 7.1:-16022662 | None:intergenic |
| CGCACAAACAACCATGACCA+CGG | 0.649348 | 7.1:+16020182 | None:intergenic |
| ATCAGCCCAGGCAAGCTCGG+AGG | 0.651917 | 7.1:-16020253 | None:intergenic |
| GTGTCCCTAATAAGTTCACA+AGG | 0.652480 | 7.1:-16022865 | None:intergenic |
| AAGTAGCAAGATAATTGGTG+AGG | 0.654137 | 7.1:-16021832 | None:intergenic |
| GAACCGGACGACGGAAAGAG+CGG | 0.669076 | 7.1:-16020229 | None:intergenic |
| AACAAAGCTAGTGACTTGGA+GGG | 0.674755 | 7.1:+16023262 | MS.gene42526:CDS |
| GCAGCCAAATGAAAAGCCTG+CGG | 0.678328 | 7.1:+16021269 | MS.gene42526:CDS |
| TTTACCATAGTCATTCAACA+AGG | 0.710598 | 7.1:-16022665 | None:intergenic |
| ACAAACAACCATGACCACGG+TGG | 0.776258 | 7.1:+16020185 | None:intergenic |
| TTCAGAAGTAGGAACCACCG+TGG | 0.790093 | 7.1:-16020199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTTATTAGTATTATCT+TGG | + | chr7.1:16020661-16020680 | MS.gene42526:intron | 15.0% |
| !!! | TATTTTTTTCTTCGTAAATT+CGG | + | chr7.1:16023139-16023158 | MS.gene42526:intron | 15.0% |
| !! | AAACATAATATCTTCTCAAA+AGG | + | chr7.1:16022037-16022056 | MS.gene42526:intron | 20.0% |
| !! | AATAACTATGATTGAATGTA+GGG | - | chr7.1:16022004-16022023 | None:intergenic | 20.0% |
| !! | ATTATTTCATCAAACCATTT+AGG | - | chr7.1:16022756-16022775 | None:intergenic | 20.0% |
| !! | TAATAACTATGATTGAATGT+AGG | - | chr7.1:16022005-16022024 | None:intergenic | 20.0% |
| !! | TATTCTAAATTAACTGTACA+AGG | - | chr7.1:16021629-16021648 | None:intergenic | 20.0% |
| !! | TCAGCAAAAAAACAAAAAAA+TGG | - | chr7.1:16022204-16022223 | None:intergenic | 20.0% |
| !!! | AACTTGTGTTTTATATACTT+TGG | + | chr7.1:16022173-16022192 | MS.gene42526:intron | 20.0% |
| !!! | ATTATGAGTGATGAATTTTT+GGG | + | chr7.1:16021099-16021118 | MS.gene42526:intron | 20.0% |
| !!! | ATTTTGTTTTTACTTCTCTT+TGG | + | chr7.1:16021648-16021667 | MS.gene42526:intron | 20.0% |
| !!! | GATCAATTTGTATAATCTTT+TGG | + | chr7.1:16021397-16021416 | MS.gene42526:CDS | 20.0% |
| !!! | TATTATGAGTGATGAATTTT+TGG | + | chr7.1:16021098-16021117 | MS.gene42526:intron | 20.0% |
| !!! | TTGATGAAATAATGTTGTTT+AGG | + | chr7.1:16022763-16022782 | MS.gene42526:intron | 20.0% |
| ! | AAAAAATAGAGAGAATTCTC+TGG | - | chr7.1:16022266-16022285 | None:intergenic | 25.0% |
| ! | AAAGTTAATTGACTGTAAGA+TGG | + | chr7.1:16023016-16023035 | MS.gene42526:CDS | 25.0% |
| ! | AAATACTATTCAAGCACAAT+TGG | + | chr7.1:16022685-16022704 | MS.gene42526:intron | 25.0% |
| ! | AAATTCCTTGTGAACTTATT+AGG | + | chr7.1:16022860-16022879 | MS.gene42526:CDS | 25.0% |
| ! | AATAAAATAAGTAGTCACAG+TGG | - | chr7.1:16021352-16021371 | None:intergenic | 25.0% |
| ! | AATTCCTTGTGAACTTATTA+GGG | + | chr7.1:16022861-16022880 | MS.gene42526:CDS | 25.0% |
| ! | AGAAAAAGTAGCAAGATAAT+TGG | - | chr7.1:16021840-16021859 | None:intergenic | 25.0% |
| ! | ATAACTATGATTGAATGTAG+GGG | - | chr7.1:16022003-16022022 | None:intergenic | 25.0% |
| ! | ATGTAATATTACATCCTACT+TGG | + | chr7.1:16021303-16021322 | MS.gene42526:intron | 25.0% |
| ! | ATGTTTCACAGATAATTGAT+TGG | + | chr7.1:16021070-16021089 | MS.gene42526:intron | 25.0% |
| ! | CAGAACTGGATAATAAATTA+TGG | - | chr7.1:16020914-16020933 | None:intergenic | 25.0% |
| ! | CATTTCTCATCTATAATTTC+TGG | + | chr7.1:16023290-16023309 | MS.gene42526:intron | 25.0% |
| ! | GAAAATGTGTTAGATTCAAT+GGG | + | chr7.1:16020379-16020398 | MS.gene42526:intron | 25.0% |
| ! | GCAAAAATACAAAAGAAAGA+TGG | - | chr7.1:16020545-16020564 | None:intergenic | 25.0% |
| ! | GTGTTGTATAAAAGTGAAAT+TGG | + | chr7.1:16020357-16020376 | MS.gene42526:intron | 25.0% |
| ! | TAATAAGTTCACAAGGAATT+TGG | - | chr7.1:16022861-16022880 | None:intergenic | 25.0% |
| ! | TACTTTACACCAATTTACTA+TGG | - | chr7.1:16020863-16020882 | None:intergenic | 25.0% |
| ! | TATCTGTGAAACATCAAATT+GGG | - | chr7.1:16021064-16021083 | None:intergenic | 25.0% |
| ! | TCAAAATTTCAAAACCAAGT+AGG | - | chr7.1:16021320-16021339 | None:intergenic | 25.0% |
| ! | TGAAAATTGTGTTTGTGATA+TGG | + | chr7.1:16020436-16020455 | MS.gene42526:intron | 25.0% |
| ! | TTATCTGTGAAACATCAAAT+TGG | - | chr7.1:16021065-16021084 | None:intergenic | 25.0% |
| !! | TCAATTTCTAGACTTTATTC+TGG | + | chr7.1:16023079-16023098 | MS.gene42526:intron | 25.0% |
| !! | TTCTCAAAAGTTTCTGAAAA+AGG | + | chr7.1:16020800-16020819 | MS.gene42526:CDS | 25.0% |
| !! | TTGAAAATGATTTTGCAACT+TGG | - | chr7.1:16022321-16022340 | None:intergenic | 25.0% |
| !!! | AATTATCTTGCTACTTTTTC+TGG | + | chr7.1:16021839-16021858 | MS.gene42526:CDS | 25.0% |
| !!! | AGTGTCTATTTTTCTCTTAT+AGG | + | chr7.1:16022139-16022158 | MS.gene42526:intron | 25.0% |
| !!! | ATGTTTTGAAGGAAAACAAA+AGG | + | chr7.1:16021585-16021604 | MS.gene42526:CDS | 25.0% |
| !!! | TAGAATTTTTGTTTGCCTTT+TGG | + | chr7.1:16022099-16022118 | MS.gene42526:intron | 25.0% |
| !!! | TAGTATTATCTTGGTTTGTT+AGG | + | chr7.1:16020670-16020689 | MS.gene42526:intron | 25.0% |
| !!! | TTTTTTTGTGTGTGTGTTTT+TGG | + | chr7.1:16022285-16022304 | MS.gene42526:intron | 25.0% |
| AAAAAATAGCTACAGCCATA+AGG | - | chr7.1:16023127-16023146 | None:intergenic | 30.0% | |
| AAAAATGCGATTGATGTCAT+TGG | + | chr7.1:16022810-16022829 | MS.gene42526:CDS | 30.0% | |
| AAATGACAGGATTAGAAAGA+TGG | + | chr7.1:16020585-16020604 | MS.gene42526:intron | 30.0% | |
| ACTACTTTGCCATAGTAAAT+TGG | + | chr7.1:16020851-16020870 | MS.gene42526:intron | 30.0% | |
| ACTGAAGAATTCATTGCTAT+GGG | + | chr7.1:16020728-16020747 | MS.gene42526:CDS | 30.0% | |
| ATTAAGCAGAAAAACAACTG+AGG | - | chr7.1:16020985-16021004 | None:intergenic | 30.0% | |
| ATTGCAGATAATAGTGAAGA+TGG | - | chr7.1:16021178-16021197 | None:intergenic | 30.0% | |
| CTGATATAACAGAGCATATT+TGG | - | chr7.1:16022581-16022600 | None:intergenic | 30.0% | |
| GGAAAATGTGTTAGATTCAA+TGG | + | chr7.1:16020378-16020397 | MS.gene42526:intron | 30.0% | |
| TATCTTCTCAAAAGGTGATA+AGG | + | chr7.1:16022045-16022064 | MS.gene42526:intron | 30.0% | |
| TCATCATCATTGATCTGAAA+GGG | - | chr7.1:16022963-16022982 | None:intergenic | 30.0% | |
| TCTTGAAAGAGTGGAAAATT+GGG | + | chr7.1:16021525-16021544 | MS.gene42526:CDS | 30.0% | |
| TGCAGATAACAACATAAAAG+TGG | - | chr7.1:16022071-16022090 | None:intergenic | 30.0% | |
| TTCAACACCTTAAAAGAAAG+AGG | - | chr7.1:16022464-16022483 | None:intergenic | 30.0% | |
| TTCATCATCATTGATCTGAA+AGG | - | chr7.1:16022964-16022983 | None:intergenic | 30.0% | |
| TTCCTTCAAAACATTAGAGA+TGG | - | chr7.1:16021579-16021598 | None:intergenic | 30.0% | |
| TTCTTGAAAGAGTGGAAAAT+TGG | + | chr7.1:16021524-16021543 | MS.gene42526:CDS | 30.0% | |
| TTTACCATAGTCATTCAACA+AGG | - | chr7.1:16022668-16022687 | None:intergenic | 30.0% | |
| ! | AACGTAAGTTTCGTGATTTT+GGG | + | chr7.1:16020290-16020309 | MS.gene42526:intron | 30.0% |
| ! | ACTTCAACCTCTTTCTTTTA+AGG | + | chr7.1:16022454-16022473 | MS.gene42526:intron | 30.0% |
| ! | ATGATGATGAAGTTGAACTA+TGG | + | chr7.1:16022973-16022992 | MS.gene42526:CDS | 30.0% |
| ! | ATTATCCAGTTCTGATAGTT+CGG | + | chr7.1:16020920-16020939 | MS.gene42526:intron | 30.0% |
| ! | CAAAAGTTTCTGAAAAAGGT+AGG | + | chr7.1:16020804-16020823 | MS.gene42526:intron | 30.0% |
| ! | CTATCGATCTTTTTGAATGA+AGG | - | chr7.1:16021503-16021522 | None:intergenic | 30.0% |
| ! | TAACGTAAGTTTCGTGATTT+TGG | + | chr7.1:16020289-16020308 | MS.gene42526:intron | 30.0% |
| ! | TAGACTTTATTCTGGCTATA+GGG | + | chr7.1:16023087-16023106 | MS.gene42526:intron | 30.0% |
| ! | TCAAGATTTTTCTTACTCAG+AGG | + | chr7.1:16022605-16022624 | MS.gene42526:CDS | 30.0% |
| ! | TGATGATGAAGTTGAACTAT+GGG | + | chr7.1:16022974-16022993 | MS.gene42526:CDS | 30.0% |
| ! | TTTTTATCTCAGCATGTCAA+AGG | + | chr7.1:16021796-16021815 | MS.gene42526:intron | 30.0% |
| !! | AAGGTGTTGAATATTCTCTA+GGG | + | chr7.1:16022473-16022492 | MS.gene42526:intron | 30.0% |
| !! | CTATTTTTCTCTTATAGGCA+AGG | + | chr7.1:16022144-16022163 | MS.gene42526:intron | 30.0% |
| !! | TAAGGTGTTGAATATTCTCT+AGG | + | chr7.1:16022472-16022491 | MS.gene42526:intron | 30.0% |
| !!! | TGCAATTGTTGATTTTGTCA+AGG | + | chr7.1:16021907-16021926 | MS.gene42526:CDS | 30.0% |
| !!! | TTTTTACTTCTCTTTGGAGT+AGG | + | chr7.1:16021654-16021673 | MS.gene42526:intron | 30.0% |
| AAGTAGCAAGATAATTGGTG+AGG | - | chr7.1:16021835-16021854 | None:intergenic | 35.0% | |
| AATTCATTGCTATGGGAAAG+TGG | + | chr7.1:16020735-16020754 | MS.gene42526:CDS | 35.0% | |
| AGAAAGATGGTATTTGTGAG+CGG | + | chr7.1:16020598-16020617 | MS.gene42526:intron | 35.0% | |
| AGACACTACAAGATGATAGA+CGG | - | chr7.1:16022126-16022145 | None:intergenic | 35.0% | |
| ATATATGACTACTGACCGAA+TGG | - | chr7.1:16021722-16021741 | None:intergenic | 35.0% | |
| CAAGGACAACTTGATTCATT+TGG | - | chr7.1:16023043-16023062 | None:intergenic | 35.0% | |
| CATGTTGTAGTGTGATTTAC+TGG | + | chr7.1:16022522-16022541 | MS.gene42526:intron | 35.0% | |
| CCATTTAGGTAGAAATACAG+TGG | - | chr7.1:16022742-16022761 | None:intergenic | 35.0% | |
| CCTTCATGTAGACATAAAAC+TGG | - | chr7.1:16021436-16021455 | None:intergenic | 35.0% | |
| GACTGAAGAATTCATTGCTA+TGG | + | chr7.1:16020727-16020746 | MS.gene42526:CDS | 35.0% | |
| GCTTAATGATGTTGTATCTG+TGG | + | chr7.1:16020998-16021017 | MS.gene42526:intron | 35.0% | |
| GTGTTAAGACTTGAAATGAC+AGG | + | chr7.1:16020572-16020591 | MS.gene42526:intron | 35.0% | |
| TAGACATAAAACTGGCAGTA+TGG | - | chr7.1:16021428-16021447 | None:intergenic | 35.0% | |
| TATATGACTACTGACCGAAT+GGG | - | chr7.1:16021721-16021740 | None:intergenic | 35.0% | |
| ! | ACGTAAGTTTCGTGATTTTG+GGG | + | chr7.1:16020291-16020310 | MS.gene42526:intron | 35.0% |
| ! | AGGTAACTTGTGTAATAGTG+AGG | + | chr7.1:16021945-16021964 | MS.gene42526:intron | 35.0% |
| ! | CCACTGTATTTCTACCTAAA+TGG | + | chr7.1:16022739-16022758 | MS.gene42526:intron | 35.0% |
| ! | CTAGACTTTATTCTGGCTAT+AGG | + | chr7.1:16023086-16023105 | MS.gene42526:intron | 35.0% |
| ! | TGAATCAAGTTGTCCTTGTT+AGG | + | chr7.1:16023045-16023064 | MS.gene42526:CDS | 35.0% |
| !! | AAATGATGCTGTGTTGTTTG+TGG | + | chr7.1:16020461-16020480 | MS.gene42526:intron | 35.0% |
| !! | CAATTTGAGTTGTGTATGAC+TGG | + | chr7.1:16020410-16020429 | MS.gene42526:intron | 35.0% |
| !! | CACCATCTCTAATGTTTTGA+AGG | + | chr7.1:16021574-16021593 | MS.gene42526:CDS | 35.0% |
| !! | CCAGTTTTATGTCTACATGA+AGG | + | chr7.1:16021433-16021452 | MS.gene42526:CDS | 35.0% |
| !! | CTACATGAAGGCATTGAATT+TGG | + | chr7.1:16021445-16021464 | MS.gene42526:CDS | 35.0% |
| AAGATGATAGACGGTCCAAA+AGG | - | chr7.1:16022117-16022136 | None:intergenic | 40.0% | |
| AAGCAAAGTCTGCTAACTTG+AGG | - | chr7.1:16020704-16020723 | None:intergenic | 40.0% | |
| ACAATCTCCATGACTTCATC+TGG | - | chr7.1:16021222-16021241 | None:intergenic | 40.0% | |
| ACACTGAAGAACAGAGATTG+AGG | - | chr7.1:16021750-16021769 | None:intergenic | 40.0% | |
| ACCATAGTCATTCAACAAGG+TGG | - | chr7.1:16022665-16022684 | None:intergenic | 40.0% | |
| ACTTATTAGGGACACACTTC+AGG | + | chr7.1:16022873-16022892 | MS.gene42526:CDS | 40.0% | |
| CAAGTTACCTGAAATACGTC+AGG | - | chr7.1:16021935-16021954 | None:intergenic | 40.0% | |
| CAATGCATTCTTCATGCACA+AGG | - | chr7.1:16022789-16022808 | None:intergenic | 40.0% | |
| CATCAAATTGGGTTCCTAAC+TGG | - | chr7.1:16021053-16021072 | None:intergenic | 40.0% | |
| CTATGATTGAATGTAGGGGA+CGG | - | chr7.1:16021999-16022018 | None:intergenic | 40.0% | |
| CTTAGGGAATGTGAAAGTTG+AGG | + | chr7.1:16020484-16020503 | MS.gene42526:intron | 40.0% | |
| GAGATGCAACATACCTAACA+AGG | - | chr7.1:16023061-16023080 | None:intergenic | 40.0% | |
| GCATTGAATTTGGCTGTTGA+TGG | + | chr7.1:16021455-16021474 | MS.gene42526:CDS | 40.0% | |
| GTGTCCCTAATAAGTTCACA+AGG | - | chr7.1:16022868-16022887 | None:intergenic | 40.0% | |
| TCAAGTTAGCAGACTTTGCT+TGG | + | chr7.1:16020703-16020722 | MS.gene42526:CDS | 40.0% | |
| TCACGAAACTTACGTTACCT+CGG | - | chr7.1:16020286-16020305 | None:intergenic | 40.0% | |
| TCATAGTTATTAGTCGCAGC+TGG | + | chr7.1:16022013-16022032 | MS.gene42526:intron | 40.0% | |
| TCCACCTTGTTGAATGACTA+TGG | + | chr7.1:16022661-16022680 | MS.gene42526:CDS | 40.0% | |
| TCGATAGCTTCTTGAAAGAG+TGG | + | chr7.1:16021516-16021535 | MS.gene42526:CDS | 40.0% | |
| TGAGAAACCAGAAAGAGAAG+AGG | - | chr7.1:16022425-16022444 | None:intergenic | 40.0% | |
| TGAGAACAAAGCTAGTGACT+TGG | + | chr7.1:16023258-16023277 | MS.gene42526:CDS | 40.0% | |
| TGAGAATCCAGATGAAGTCA+TGG | + | chr7.1:16021212-16021231 | MS.gene42526:CDS | 40.0% | |
| TTCAACCGAACTATCAGAAC+TGG | - | chr7.1:16020928-16020947 | None:intergenic | 40.0% | |
| TTGGAAAAGATGTGTCGCAA+AGG | - | chr7.1:16022387-16022406 | None:intergenic | 40.0% | |
| ! | AACAAAGCTAGTGACTTGGA+GGG | + | chr7.1:16023262-16023281 | MS.gene42526:CDS | 40.0% |
| ! | AATTTTCACAGCGATTCCAC+TGG | - | chr7.1:16022238-16022257 | None:intergenic | 40.0% |
| ! | GCGTTTTTCACTTTCCAGTT+AGG | + | chr7.1:16021036-16021055 | MS.gene42526:intron | 40.0% |
| !! | GTTTCGTGATTTTGGGGATT+TGG | + | chr7.1:16020297-16020316 | MS.gene42526:intron | 40.0% |
| !!! | TGCTACTTTTTCTGGAGAAG+AGG | + | chr7.1:16021847-16021866 | MS.gene42526:CDS | 40.0% |
| !!! | TTGGGGATTTGGTTGGTTTT+GGG | + | chr7.1:16020308-16020327 | MS.gene42526:intron | 40.0% |
| !!! | TTTGGGGATTTGGTTGGTTT+TGG | + | chr7.1:16020307-16020326 | MS.gene42526:intron | 40.0% |
| AGAAACAGCTCTCTCTGTTC+TGG | - | chr7.1:16021554-16021573 | None:intergenic | 45.0% | |
| AGAAAGAGAAGAGGCTGCAA+CGG | - | chr7.1:16022416-16022435 | None:intergenic | 45.0% | |
| ATGCTGACCAAAAACCCGAT+CGG | - | chr7.1:16023225-16023244 | None:intergenic | 45.0% | |
| CACGAAACTTACGTTACCTC+GGG | - | chr7.1:16020285-16020304 | None:intergenic | 45.0% | |
| CATCAGTCTCACTACCCATT+CGG | + | chr7.1:16021704-16021723 | MS.gene42526:intron | 45.0% | |
| CATTGCTATGGGAAAGTGGT+TGG | + | chr7.1:16020739-16020758 | MS.gene42526:CDS | 45.0% | |
| GAAGAACAGAGATTGAGGTG+TGG | - | chr7.1:16021745-16021764 | None:intergenic | 45.0% | |
| GCATGTAGACATGCACCTTA+TGG | + | chr7.1:16023109-16023128 | MS.gene42526:intron | 45.0% | |
| ! | GAACAAAGCTAGTGACTTGG+AGG | + | chr7.1:16023261-16023280 | MS.gene42526:CDS | 45.0% |
| ! | GTGAAGATGGACTCTACATC+TGG | - | chr7.1:16021165-16021184 | None:intergenic | 45.0% |
| ! | TTGGTTGATCTCAGCTCTGA+TGG | + | chr7.1:16022829-16022848 | MS.gene42526:CDS | 45.0% |
| !! | CGTGATTTTGGGGATTTGGT+TGG | + | chr7.1:16020301-16020320 | MS.gene42526:intron | 45.0% |
| !! | GCATGTTTTGAGTGAAGCCA+AGG | + | chr7.1:16021871-16021890 | MS.gene42526:CDS | 45.0% |
| !! | GCTGTGTTGTTTGTGGCTTA+GGG | + | chr7.1:16020468-16020487 | MS.gene42526:intron | 45.0% |
| !! | TGCTGTGTTGTTTGTGGCTT+AGG | + | chr7.1:16020467-16020486 | MS.gene42526:intron | 45.0% |
| !! | TGTTTTGAGTGAAGCCAAGG+AGG | + | chr7.1:16021874-16021893 | MS.gene42526:CDS | 45.0% |
| !!! | GGGTTTTTGGTCAGCATCAA+TGG | + | chr7.1:16023228-16023247 | MS.gene42526:CDS | 45.0% |
| !!! | TGGGGATTTGGTTGGTTTTG+GGG | + | chr7.1:16020309-16020328 | MS.gene42526:intron | 45.0% |
| GCAGCCAAATGAAAAGCCTG+CGG | + | chr7.1:16021269-16021288 | MS.gene42526:CDS | 50.0% | |
| GCGGTGTCTTCTTCAGAAGT+AGG | - | chr7.1:16020213-16020232 | None:intergenic | 50.0% | |
| GCTGAGAGATTCCAAACCAG+TGG | + | chr7.1:16022219-16022238 | MS.gene42526:intron | 50.0% | |
| GTTGCAGCCTCTTCTCTTTC+TGG | + | chr7.1:16022415-16022434 | MS.gene42526:intron | 50.0% | |
| TACATCTTCAATCGCACCGC+AGG | - | chr7.1:16021288-16021307 | None:intergenic | 50.0% | |
| TACTGGACATGCCTGCTGTT+GGG | + | chr7.1:16022539-16022558 | MS.gene42526:CDS | 50.0% | |
| TATGGGAAAGTGGTTGGAGC+TGG | + | chr7.1:16020745-16020764 | MS.gene42526:CDS | 50.0% | |
| TTACTGGACATGCCTGCTGT+TGG | + | chr7.1:16022538-16022557 | MS.gene42526:CDS | 50.0% | |
| TTCAGAAGTAGGAACCACCG+TGG | - | chr7.1:16020202-16020221 | None:intergenic | 50.0% | |
| ! | CAAGGCACCTGACGTATTTC+AGG | + | chr7.1:16021925-16021944 | MS.gene42526:CDS | 50.0% |
| ! | GATCTCAGCTCTGATGGATC+TGG | + | chr7.1:16022835-16022854 | MS.gene42526:CDS | 50.0% |
| ! | TCACAGCGATTCCACTGGTT+TGG | - | chr7.1:16022233-16022252 | None:intergenic | 50.0% |
| GAGGCTGCAACGGAGAGAAT+TGG | - | chr7.1:16022406-16022425 | None:intergenic | 55.0% | |
| TGTGCAGTCATCACGCCGAT+CGG | + | chr7.1:16023207-16023226 | MS.gene42526:intron | 55.0% | |
| TTCTCCAGTTGCCCAACAGC+AGG | - | chr7.1:16022553-16022572 | None:intergenic | 55.0% | |
| ! | CATCACGCCGATCGGGTTTT+TGG | + | chr7.1:16023215-16023234 | MS.gene42526:CDS | 55.0% |
| ! | CGCACCGCAGGCTTTTCATT+TGG | - | chr7.1:16021276-16021295 | None:intergenic | 55.0% |
| ACACCGCTCTTTCCGTCGTC+CGG | + | chr7.1:16020226-16020245 | MS.gene42526:CDS | 60.0% | |
| AGAGACGCGACAGGGAGAAG+GGG | - | chr7.1:16022364-16022383 | None:intergenic | 60.0% | |
| AGCATCAGCCCAGGCAAGCT+CGG | - | chr7.1:16020259-16020278 | None:intergenic | 60.0% | |
| CATGCCTGCTGTTGGGCAAC+TGG | + | chr7.1:16022546-16022565 | MS.gene42526:CDS | 60.0% | |
| CGCAAAGGAGAGACGCGACA+GGG | - | chr7.1:16022372-16022391 | None:intergenic | 60.0% | |
| GAACCGGACGACGGAAAGAG+CGG | - | chr7.1:16020232-16020251 | None:intergenic | 60.0% | |
| GAGAGACGCGACAGGGAGAA+GGG | - | chr7.1:16022365-16022384 | None:intergenic | 60.0% | |
| GTGCAGTCATCACGCCGATC+GGG | + | chr7.1:16023208-16023227 | MS.gene42526:intron | 60.0% | |
| TCGCAAAGGAGAGACGCGAC+AGG | - | chr7.1:16022373-16022392 | None:intergenic | 60.0% | |
| TGCACGCACAGCTTCCTCCT+TGG | - | chr7.1:16021891-16021910 | None:intergenic | 60.0% | |
| AGGCAAGCTCGGAGGCGAAC+CGG | - | chr7.1:16020248-16020267 | None:intergenic | 65.0% | |
| ATCAGCCCAGGCAAGCTCGG+AGG | - | chr7.1:16020256-16020275 | None:intergenic | 65.0% | |
| GAGCTTGCCTGGGCTGATGC+TGG | + | chr7.1:16020258-16020277 | MS.gene42526:CDS | 65.0% | |
| GGAGAGACGCGACAGGGAGA+AGG | - | chr7.1:16022366-16022385 | None:intergenic | 65.0% | |
| GTTCGCCTCCGAGCTTGCCT+GGG | + | chr7.1:16020248-16020267 | MS.gene42526:CDS | 65.0% | |
| CTCGGAGGCGAACCGGACGA+CGG | - | chr7.1:16020241-16020260 | None:intergenic | 70.0% | |
| CTCGGGACCAGCATCAGCCC+AGG | - | chr7.1:16020268-16020287 | None:intergenic | 70.0% | |
| CTGGGCTGATGCTGGTCCCG+AGG | + | chr7.1:16020266-16020285 | MS.gene42526:CDS | 70.0% | |
| GGTTCGCCTCCGAGCTTGCC+TGG | + | chr7.1:16020247-16020266 | MS.gene42526:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16020195 | 16023367 | 16020195 | ID=MS.gene42526 |
| chr7.1 | mRNA | 16020195 | 16023367 | 16020195 | ID=MS.gene42526.t1;Parent=MS.gene42526 |
| chr7.1 | exon | 16020195 | 16020287 | 16020195 | ID=MS.gene42526.t1.exon1;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16020195 | 16020287 | 16020195 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16020692 | 16020821 | 16020692 | ID=MS.gene42526.t1.exon2;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16020692 | 16020821 | 16020692 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16021166 | 16021304 | 16021166 | ID=MS.gene42526.t1.exon3;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16021166 | 16021304 | 16021166 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16021394 | 16021606 | 16021394 | ID=MS.gene42526.t1.exon4;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16021394 | 16021606 | 16021394 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16021808 | 16021946 | 16021808 | ID=MS.gene42526.t1.exon5;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16021808 | 16021946 | 16021808 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16022532 | 16022682 | 16022532 | ID=MS.gene42526.t1.exon6;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16022532 | 16022682 | 16022532 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16022785 | 16022894 | 16022785 | ID=MS.gene42526.t1.exon7;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16022785 | 16022894 | 16022785 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16022969 | 16023066 | 16022969 | ID=MS.gene42526.t1.exon8;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16022969 | 16023066 | 16022969 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16023214 | 16023283 | 16023214 | ID=MS.gene42526.t1.exon9;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16023214 | 16023283 | 16023214 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| chr7.1 | exon | 16023341 | 16023367 | 16023341 | ID=MS.gene42526.t1.exon10;Parent=MS.gene42526.t1 |
| chr7.1 | CDS | 16023341 | 16023367 | 16023341 | ID=cds.MS.gene42526.t1;Parent=MS.gene42526.t1 |
| Gene Sequence |
| Protein sequence |
