AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015341

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015341.t1 MTR_5g013900 100.000 207 0 0 1 207 1 207 1.49e-153 424
MS.gene015341.t1 MTR_4g098950 91.304 207 17 1 1 207 1 206 1.43e-140 391
MS.gene015341.t1 MTR_8g090215 84.058 207 33 0 1 207 1 207 1.28e-130 365
MS.gene015341.t1 MTR_3g087160 84.058 207 32 1 1 207 1 206 5.28e-129 362
MS.gene015341.t1 MTR_1g094220 47.561 164 85 1 9 171 31 194 1.12e-50 163
MS.gene015341.t1 MTR_1g094220 47.170 159 83 1 9 166 31 189 2.93e-48 157
MS.gene015341.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 2.37e-47 154
MS.gene015341.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 3.63e-47 155
MS.gene015341.t1 MTR_8g031680 44.099 161 90 0 10 170 7 167 5.03e-47 154
MS.gene015341.t1 MTR_3g064390 40.341 176 105 0 11 186 12 187 1.06e-46 152
MS.gene015341.t1 MTR_5g076590 39.773 176 106 0 11 186 12 187 1.81e-46 152
MS.gene015341.t1 MTR_8g103550 43.750 160 90 0 11 170 11 170 1.46e-45 150
MS.gene015341.t1 MTR_2g102060 41.618 173 97 1 3 171 4 176 2.69e-45 149
MS.gene015341.t1 MTR_8g031870 44.304 158 88 0 10 167 7 164 5.46e-45 148
MS.gene015341.t1 MTR_4g064897 36.893 206 117 2 10 206 13 214 7.79e-45 148
MS.gene015341.t1 MTR_2g005500 43.478 161 91 0 10 170 10 170 1.78e-44 147
MS.gene015341.t1 MTR_3g069510 35.922 206 120 2 10 206 13 215 8.21e-44 146
MS.gene015341.t1 MTR_0262s0050 41.401 157 92 0 10 166 16 172 1.71e-43 145
MS.gene015341.t1 MTR_8g031660 42.857 161 92 0 10 170 7 167 1.89e-43 145
MS.gene015341.t1 MTR_8g089985 40.909 154 91 0 10 163 18 171 5.07e-43 144
MS.gene015341.t1 MTR_2g005510 41.290 155 91 0 10 164 16 170 6.58e-43 144
MS.gene015341.t1 MTR_3g086980 39.610 154 93 0 10 163 17 170 1.86e-42 142
MS.gene015341.t1 MTR_6g021790 35.354 198 119 3 10 204 7 198 1.91e-42 142
MS.gene015341.t1 MTR_4g012940 39.216 204 111 3 11 207 10 207 2.55e-42 142
MS.gene015341.t1 MTR_1g052475 40.127 157 94 0 10 166 16 172 2.79e-42 142
MS.gene015341.t1 MTR_7g051940 42.208 154 89 0 10 163 14 167 2.86e-42 142
MS.gene015341.t1 MTR_2g027660 36.264 182 110 1 10 191 7 182 3.86e-42 141
MS.gene015341.t1 MTR_8g027220 34.951 206 126 1 10 207 27 232 4.78e-42 142
MS.gene015341.t1 MTR_8g006970 37.563 197 117 2 10 205 23 214 5.48e-42 141
MS.gene015341.t1 MTR_4g079350 34.715 193 108 1 10 184 14 206 8.63e-42 140
MS.gene015341.t1 MTR_4g088090 33.679 193 110 1 10 184 14 206 8.82e-42 140
MS.gene015341.t1 MTR_8g036220 33.000 200 130 1 10 205 17 216 1.57e-41 140
MS.gene015341.t1 MTR_7g081700 40.373 161 96 0 10 170 9 169 3.06e-41 139
MS.gene015341.t1 MTR_4g069850 38.756 209 104 6 11 207 10 206 5.51e-41 138
MS.gene015341.t1 MTR_8g031830 41.830 153 89 0 10 162 7 159 8.50e-41 137
MS.gene015341.t1 MTR_2g014990 38.854 157 96 0 10 166 14 170 9.00e-41 138
MS.gene015341.t1 MTR_8g006970 40.373 161 96 0 10 170 9 169 1.09e-40 137
MS.gene015341.t1 MTR_1g078200 39.490 157 95 0 10 166 15 171 1.24e-40 138
MS.gene015341.t1 MTR_2g075950 37.580 157 98 0 10 166 14 170 1.49e-40 137
MS.gene015341.t1 MTR_7g405790 39.490 157 95 0 10 166 16 172 3.68e-40 137
MS.gene015341.t1 MTR_2g101890 37.745 204 114 3 11 207 12 209 3.76e-40 136
MS.gene015341.t1 MTR_6g079550 40.909 154 91 0 10 163 13 166 1.65e-39 135
MS.gene015341.t1 MTR_2g083860 36.943 157 99 0 10 166 14 170 1.86e-39 135
MS.gene015341.t1 MTR_1g115325 36.869 198 121 3 11 205 17 213 2.22e-39 134
MS.gene015341.t1 MTR_1g068740 37.143 210 125 4 3 205 5 214 3.02e-39 134
MS.gene015341.t1 MTR_1g068730 37.143 210 125 4 3 205 5 214 5.46e-39 133
MS.gene015341.t1 MTR_2g090865 34.694 196 109 2 10 187 12 206 3.70e-38 131
MS.gene015341.t1 MTR_7g100020 41.139 158 92 1 11 167 17 174 3.65e-37 129
MS.gene015341.t1 MTR_2g096550 36.634 202 115 5 11 205 17 212 3.75e-37 129
MS.gene015341.t1 MTR_8g092020 36.538 208 109 6 11 207 14 209 5.53e-37 128
MS.gene015341.t1 MTR_4g063160 36.683 199 122 3 11 205 17 215 5.86e-37 128
MS.gene015341.t1 MTR_3g064390 43.200 125 71 0 11 135 12 136 1.47e-36 125
MS.gene015341.t1 MTR_8g093740 36.869 198 119 4 10 205 14 207 8.12e-36 125
MS.gene015341.t1 MTR_1g097420 33.333 204 123 4 11 207 10 207 7.75e-35 122
MS.gene015341.t1 MTR_4g099470 36.207 174 106 1 32 205 7 175 9.29e-35 121
MS.gene015341.t1 MTR_7g117910 40.476 126 75 0 10 135 21 146 9.95e-35 122
MS.gene015341.t1 MTR_3g096350 35.922 206 110 5 10 205 13 206 5.14e-34 120
MS.gene015341.t1 MTR_1g062760 39.375 160 94 3 10 167 15 173 5.74e-33 118
MS.gene015341.t1 MTR_7g103070 36.875 160 99 2 10 167 17 176 1.87e-32 117
MS.gene015341.t1 MTR_1g090717 40.000 160 93 3 10 166 16 175 1.92e-32 116
MS.gene015341.t1 MTR_8g107070 37.662 154 96 0 10 163 15 168 2.79e-32 117
MS.gene015341.t1 MTR_1g029450 34.673 199 126 4 10 206 18 214 8.33e-32 115
MS.gene015341.t1 MTR_1g097420 31.707 205 125 5 10 207 38 234 3.26e-31 114
MS.gene015341.t1 MTR_1g068730 37.956 137 81 1 2 134 4 140 3.13e-29 107
MS.gene015341.t1 MTR_1g068740 38.519 135 79 1 2 132 4 138 4.70e-29 107
MS.gene015341.t1 MTR_8g093740 34.911 169 105 3 40 206 10 175 3.79e-26 99.4
MS.gene015341.t1 MTR_3g107707 31.977 172 106 3 10 177 14 178 4.20e-26 100
MS.gene015341.t1 MTR_3g107717 31.977 172 106 3 10 177 14 178 4.38e-26 100
MS.gene015341.t1 MTR_3g107713 33.333 168 109 3 10 177 14 178 4.72e-26 100
MS.gene015341.t1 MTR_6g039490 29.412 204 129 4 11 207 10 205 1.64e-25 99.4
MS.gene015341.t1 MTR_3g096350 40.945 127 70 4 10 132 13 138 2.03e-25 96.7
MS.gene015341.t1 MTR_3g096350 42.063 126 70 3 10 133 13 137 8.54e-25 95.5
MS.gene015341.t1 MTR_7g103070 40.351 114 66 2 56 167 7 120 7.55e-23 90.5
MS.gene015341.t1 MTR_2g090875 35.758 165 92 5 11 163 8 170 4.17e-22 89.4
MS.gene015341.t1 MTR_3g078260 35.758 165 92 5 11 163 10 172 7.21e-22 89.4
MS.gene015341.t1 MTR_4g088055 35.152 165 93 5 11 163 8 170 2.01e-21 87.8
MS.gene015341.t1 MTR_2g005500 31.056 161 71 1 10 170 10 130 7.34e-21 85.5
MS.gene015341.t1 MTR_8g075240 32.727 165 97 5 11 163 8 170 3.08e-20 84.7
MS.gene015341.t1 MTR_6g087980 33.939 165 95 5 11 163 8 170 3.67e-20 84.7
MS.gene015341.t1 MTR_5g022600 32.727 165 97 5 11 163 8 170 3.68e-20 84.3
MS.gene015341.t1 MTR_4g113620 30.952 168 104 4 10 177 14 169 6.72e-20 84.0
MS.gene015341.t1 MTR_4g073250 32.121 165 98 5 11 163 8 170 4.12e-19 81.6
MS.gene015341.t1 MTR_1452s0010 46.154 78 42 0 29 106 1 78 5.20e-19 79.0
MS.gene015341.t1 MTR_5g092060 27.485 171 118 3 5 170 100 269 2.45e-16 75.9
MS.gene015341.t1 MTR_3g078260 38.596 114 67 3 11 123 10 121 2.99e-16 72.8
MS.gene015341.t1 MTR_1686s0010 39.744 78 47 0 29 106 1 78 6.28e-16 70.5
MS.gene015341.t1 MTR_4g047870 24.260 169 122 2 7 170 89 256 2.91e-12 64.3
MS.gene015341.t1 MTR_8g031810 26.733 101 60 1 10 110 7 93 5.22e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015341.t1 AT2G44610 92.788 208 14 1 1 207 1 208 6.55e-143 397
MS.gene015341.t1 AT5G10260 86.957 207 27 0 1 207 1 207 1.48e-133 373
MS.gene015341.t1 AT2G22290 83.092 207 35 0 1 207 1 207 2.09e-127 357
MS.gene015341.t1 AT4G39890 76.636 214 43 3 1 207 1 214 2.87e-114 325
MS.gene015341.t1 AT5G64990 76.733 202 40 2 10 207 8 206 1.58e-106 305
MS.gene015341.t1 AT5G64990 74.163 209 40 3 10 207 8 213 9.28e-104 298
MS.gene015341.t1 AT3G54840 47.561 164 85 1 9 171 33 196 2.48e-50 162
MS.gene015341.t1 AT3G54840 47.826 161 83 1 12 171 2 162 1.57e-49 159
MS.gene015341.t1 AT4G19640 42.857 161 92 0 11 171 12 172 3.90e-48 156
MS.gene015341.t1 AT3G54840 48.077 156 80 1 9 163 33 188 4.15e-48 156
MS.gene015341.t1 AT5G45130 42.857 161 92 0 11 171 12 172 4.68e-48 156
MS.gene015341.t1 AT5G45130 42.138 159 92 0 13 171 22 180 4.90e-46 151
MS.gene015341.t1 AT4G17170 34.928 209 117 2 10 205 7 209 4.84e-44 146
MS.gene015341.t1 AT1G09630 41.401 157 92 0 10 166 13 169 5.21e-44 146
MS.gene015341.t1 AT1G07410 41.401 157 92 0 10 166 13 169 8.76e-44 145
MS.gene015341.t1 AT3G11730 37.811 201 113 2 10 205 9 202 9.48e-44 145
MS.gene015341.t1 AT4G17160 39.506 162 98 0 9 170 6 167 1.58e-43 145
MS.gene015341.t1 AT5G65270 38.854 157 96 0 10 166 18 174 1.72e-43 145
MS.gene015341.t1 AT5G59150 40.373 161 96 0 10 170 13 173 2.27e-43 145
MS.gene015341.t1 AT3G12160 41.401 157 92 0 10 166 16 172 5.68e-43 144
MS.gene015341.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene015341.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene015341.t1 AT3G15060 37.853 177 107 1 10 186 14 187 2.08e-42 142
MS.gene015341.t1 AT4G39990 38.217 157 97 0 10 166 18 174 2.32e-42 142
MS.gene015341.t1 AT1G05810 37.624 202 122 2 10 207 13 214 2.65e-42 142
MS.gene015341.t1 AT5G60860 34.715 193 108 1 10 184 14 206 2.94e-42 142
MS.gene015341.t1 AT1G05810 37.931 203 120 3 10 207 59 260 6.39e-42 142
MS.gene015341.t1 AT1G02130 40.373 161 96 0 10 170 9 169 1.33e-41 140
MS.gene015341.t1 AT4G35860 34.848 198 120 3 10 204 7 198 1.58e-41 140
MS.gene015341.t1 AT2G43130 36.000 200 123 2 10 205 13 211 2.20e-41 139
MS.gene015341.t1 AT2G31680 40.127 157 94 0 10 166 13 169 2.42e-41 140
MS.gene015341.t1 AT5G47520 39.490 157 95 0 10 166 15 171 2.53e-41 140
MS.gene015341.t1 AT5G47200 36.735 196 119 1 10 205 9 199 2.67e-41 139
MS.gene015341.t1 AT4G17530 37.113 194 122 0 10 203 9 202 2.72e-41 139
MS.gene015341.t1 AT3G18820 38.278 209 105 5 11 207 10 206 6.79e-41 138
MS.gene015341.t1 AT3G07410 42.208 154 89 0 10 163 13 166 8.55e-41 138
MS.gene015341.t1 AT5G47960 39.610 154 93 0 10 163 16 169 9.45e-41 138
MS.gene015341.t1 AT1G28550 38.854 157 96 0 10 166 14 170 1.27e-40 138
MS.gene015341.t1 AT1G52280 38.235 204 112 3 11 207 10 206 4.04e-40 136
MS.gene015341.t1 AT1G16920 36.628 172 106 1 10 181 14 182 5.27e-40 136
MS.gene015341.t1 AT1G18200 40.909 154 91 0 10 163 14 167 5.85e-40 136
MS.gene015341.t1 AT4G18430 33.816 207 120 3 10 205 14 214 1.66e-39 135
MS.gene015341.t1 AT1G73640 38.961 154 94 0 10 163 14 167 1.12e-38 133
MS.gene015341.t1 AT2G33870 37.580 157 98 0 10 166 14 170 1.34e-38 132
MS.gene015341.t1 AT5G45750 35.669 157 101 0 10 166 14 170 2.94e-38 132
MS.gene015341.t1 AT1G06400 36.943 157 99 0 10 166 14 170 4.48e-38 131
MS.gene015341.t1 AT3G16100 37.745 204 113 3 11 207 10 206 4.87e-38 130
MS.gene015341.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene015341.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene015341.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene015341.t1 AT1G01200 40.764 157 91 2 10 164 29 185 8.98e-38 131
MS.gene015341.t1 AT5G59840 36.041 197 124 2 11 205 17 213 1.07e-37 130
MS.gene015341.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene015341.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene015341.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene015341.t1 AT4G19640 42.400 125 72 0 11 135 12 136 4.77e-37 126
MS.gene015341.t1 AT4G18800 35.032 157 102 0 10 166 14 170 5.64e-37 128
MS.gene015341.t1 AT5G03520 35.377 212 131 3 1 206 3 214 9.15e-37 128
MS.gene015341.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene015341.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene015341.t1 AT4G19640 42.400 125 72 0 11 135 12 136 5.55e-36 125
MS.gene015341.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene015341.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene015341.t1 AT3G09900 39.037 187 109 2 1 182 3 189 1.28e-35 125
MS.gene015341.t1 AT1G22740 37.321 209 104 8 11 207 10 203 2.38e-34 121
MS.gene015341.t1 AT5G39620 34.112 214 112 6 9 207 5 204 9.79e-34 120
MS.gene015341.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene015341.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene015341.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene015341.t1 AT2G21880 37.725 167 91 3 11 167 11 174 5.42e-33 118
MS.gene015341.t1 AT4G09720 33.333 204 122 5 11 207 10 206 6.01e-33 117
MS.gene015341.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene015341.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene015341.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene015341.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene015341.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene015341.t1 AT4G09720 32.536 209 122 5 11 207 10 211 1.52e-31 114
MS.gene015341.t1 AT4G35860 36.774 155 89 3 53 204 4 152 5.33e-31 111
MS.gene015341.t1 AT4G09720 31.628 215 122 5 11 207 10 217 8.40e-31 112
MS.gene015341.t1 AT5G59150 40.678 118 70 0 53 170 5 122 5.06e-29 106
MS.gene015341.t1 AT5G03520 34.545 165 106 2 44 206 40 204 4.88e-28 105
MS.gene015341.t1 AT5G20010 31.383 188 112 4 10 187 14 194 1.61e-26 101
MS.gene015341.t1 AT5G20020 31.977 172 106 3 10 177 14 178 2.53e-26 101
MS.gene015341.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene015341.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene015341.t1 AT5G55190 31.977 172 106 3 10 177 14 178 5.62e-26 100
MS.gene015341.t1 AT5G55080 30.994 171 115 3 7 177 11 178 8.06e-26 100
MS.gene015341.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene015341.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene015341.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene015341.t1 AT2G21880 33.533 167 90 4 11 167 11 166 1.63e-23 93.6
MS.gene015341.t1 AT2G44690 33.939 165 95 5 11 163 20 182 9.55e-23 91.7
MS.gene015341.t1 AT3G48040 36.364 165 91 5 11 163 10 172 9.32e-22 89.0
MS.gene015341.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene015341.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene015341.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene015341.t1 AT1G75840 33.939 165 95 5 11 163 8 170 1.09e-20 85.9
MS.gene015341.t1 AT1G20090 33.939 165 95 5 11 163 7 169 1.17e-20 85.9
MS.gene015341.t1 AT5G62880 36.364 165 91 6 11 163 10 172 1.80e-20 85.9
MS.gene015341.t1 AT3G51300 33.333 165 96 5 11 163 8 170 3.33e-20 84.7
MS.gene015341.t1 AT4G35950 33.333 165 96 5 11 163 8 170 6.39e-20 84.0
MS.gene015341.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene015341.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene015341.t1 AT3G48040 35.897 156 86 5 11 154 10 163 7.04e-19 80.5
MS.gene015341.t1 AT4G28950 32.515 163 98 5 11 163 8 168 9.34e-19 80.9
MS.gene015341.t1 AT5G45970 32.530 166 96 6 11 163 8 170 3.41e-18 79.3
MS.gene015341.t1 AT5G62880 38.525 122 72 3 11 131 10 129 6.38e-18 78.6
MS.gene015341.t1 AT5G46025 40.964 83 48 1 85 166 20 102 2.55e-15 69.7
MS.gene015341.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene015341.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene015341.t1 AT3G21700 26.163 172 120 3 5 170 102 272 3.83e-14 69.7
MS.gene015341.t1 AT5G54840 27.108 166 113 5 11 170 103 266 8.86e-14 68.9
MS.gene015341.t1 AT3G51290 32.624 141 81 5 35 163 633 771 1.26e-12 66.6
MS.gene015341.t1 AT3G21700 25.581 172 120 4 5 170 102 271 9.78e-12 63.2

Find 39 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCACTTTGTTGTATTT+AGG 0.181950 5.4:-7861442 None:intergenic
CAAAGCTGGATTTAATATTA+AGG 0.271646 5.4:+7862474 MS.gene015341:CDS
GAAGATAGTGTTTCCATTCC+AGG 0.313624 5.4:-7862898 None:intergenic
TACTTCGCCAAAGCTGATAC+TGG 0.339848 5.4:-7859010 None:intergenic
CTTAATATTAAATCCAGCTT+TGG 0.362326 5.4:-7862473 None:intergenic
GTAAACTTAAAGTCTTCATC+TGG 0.363108 5.4:+7862946 MS.gene015341:CDS
GAAGTACAAACTGGTGTTCT+TGG 0.394319 5.4:+7859027 MS.gene015341:CDS
TAAATTCGACAACACCTATC+AGG 0.414459 5.4:+7859099 MS.gene015341:CDS
AAAATTGCTGCTGCATTACC+TGG 0.441428 5.4:+7862880 MS.gene015341:CDS
ATGTCATTATTGTTCTTGTT+GGG 0.447960 5.4:+7861492 MS.gene015341:CDS
TGCTGCTGCATTACCTGGAA+TGG 0.467151 5.4:+7862885 MS.gene015341:CDS
AAGTACAAACTGGTGTTCTT+GGG 0.481954 5.4:+7859028 MS.gene015341:CDS
ATTGAAACTAGCGCCAAAGC+TGG 0.491491 5.4:+7862460 MS.gene015341:CDS
GATGTCATTATTGTTCTTGT+TGG 0.493852 5.4:+7861491 MS.gene015341:CDS
TTCTGCAAAACAAGAAGACT+TGG 0.495641 5.4:+7862918 MS.gene015341:CDS
TGATAGGGATACAGCTGGAC+AGG 0.496271 5.4:+7860761 MS.gene015341:intron
AGCTTTGGCGAAGTACAAAC+TGG 0.499226 5.4:+7859018 MS.gene015341:CDS
GAATATTGAAGATACCTGAT+AGG 0.509953 5.4:-7859113 None:intergenic
TGCAACATCATATACAATAA+CGG 0.512280 5.4:-7860832 None:intergenic
GACAAGTCTCCATAGAGGAC+GGG 0.512967 5.4:+7862404 MS.gene015341:intron
AATGGCGCCAGTATCAGCTT+TGG 0.514481 5.4:+7859003 None:intergenic
CAATCTCAAACTCAATCAAG+TGG 0.517260 5.4:+7862976 MS.gene015341:CDS
GATGAGTCTCTGATGTAGCT+TGG 0.526858 5.4:-7860804 None:intergenic
TGTTCTGATAGGGATACAGC+TGG 0.529034 5.4:+7860756 MS.gene015341:intron
AAACTGATCTCGTTGAAAAG+AGG 0.533179 5.4:+7861519 MS.gene015341:CDS
TTCTTGGGTGACCAATCCGT+TGG 0.534832 5.4:+7859043 MS.gene015341:CDS
ATCATATACAATAACGGCTA+CGG 0.543543 5.4:-7860826 None:intergenic
TGAAGAGGTGCGAACAGAGA+GGG 0.556153 5.4:+7861463 MS.gene015341:CDS
TAAACTTAAAGTCTTCATCT+GGG 0.572801 5.4:+7862947 MS.gene015341:CDS
TTGAAGAGGTGCGAACAGAG+AGG 0.586465 5.4:+7861462 MS.gene015341:CDS
CTTTCCTAAATACAACAAAG+TGG 0.589578 5.4:+7861438 MS.gene015341:CDS
GAAGAGGTGCGAACAGAGAG+GGG 0.592899 5.4:+7861464 MS.gene015341:CDS
TTGTATTTAGGAAAGTCTGC+CGG 0.610534 5.4:-7861430 None:intergenic
AGACAAGTCTCCATAGAGGA+CGG 0.619191 5.4:+7862403 MS.gene015341:intron
ACAAGTCTCCATAGAGGACG+GGG 0.622928 5.4:+7862405 MS.gene015341:CDS
TACAACAAAGTGGATTGAAG+AGG 0.628316 5.4:+7861448 MS.gene015341:CDS
GAACTGTTCGACTACAGTTG+TGG 0.643989 5.4:+7860379 MS.gene015341:CDS
CATGAAGCGAGTGATGATGC+TGG 0.674864 5.4:-7859071 None:intergenic
CTGCAGACAAGTCTCCATAG+AGG 0.688178 5.4:+7862399 MS.gene015341:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATCATAATAAGTTA+AGG - chr5.4:7860298-7860317 None:intergenic 10.0%
!! TTCAAAATAAATAAATTGTT+GGG + chr5.4:7861866-7861885 MS.gene015341:intron 10.0%
!!! TTATTTTTTTACTTTGTTTT+TGG + chr5.4:7860701-7860720 MS.gene015341:intron 10.0%
!! AATTCTATTCAAAAAAATGA+AGG - chr5.4:7861177-7861196 None:intergenic 15.0%
!! ATTATACAAAATTATGAGAT+TGG + chr5.4:7862615-7862634 MS.gene015341:intron 15.0%
!! GAATACTATACTATAATAAA+TGG - chr5.4:7859205-7859224 None:intergenic 15.0%
!! GTTCAAAATAAATAAATTGT+TGG + chr5.4:7861865-7861884 MS.gene015341:intron 15.0%
!! TTTAAGCTAGAATTAAAATT+AGG + chr5.4:7861568-7861587 MS.gene015341:intron 15.0%
!!! ATTTTGTTCTAATACTTTTT+TGG + chr5.4:7862833-7862852 MS.gene015341:intron 15.0%
!!! ATTTTTTTTCTTTTCTATCA+GGG + chr5.4:7862790-7862809 MS.gene015341:intron 15.0%
!!! TAAATCATTATTTTCATTCA+TGG - chr5.4:7861552-7861571 None:intergenic 15.0%
!!! TCAATATGATTTGATTTTAT+TGG + chr5.4:7859145-7859164 MS.gene015341:intron 15.0%
!! AATAAATAAATTGTTGGGTT+TGG + chr5.4:7861871-7861890 MS.gene015341:intron 20.0%
!! ATTATACCTTAGAATATGTT+TGG + chr5.4:7861065-7861084 MS.gene015341:intron 20.0%
!! ATTTAATATTAAGGTAACCT+GGG + chr5.4:7862483-7862502 MS.gene015341:intron 20.0%
!! GAAAATGTTATTCAAAAAGA+GGG - chr5.4:7859183-7859202 None:intergenic 20.0%
!! GAATTAAAATTAGGAACTAT+TGG + chr5.4:7861577-7861596 MS.gene015341:intron 20.0%
!! GAGAATTATTAAATTGTGAT+CGG + chr5.4:7861699-7861718 MS.gene015341:intron 20.0%
!! GATAATTTACTGAATACATA+TGG - chr5.4:7862573-7862592 None:intergenic 20.0%
!! TAGTATAGTATTCATAATGT+TGG + chr5.4:7859212-7859231 MS.gene015341:intron 20.0%
!! TCTTATAATTTGATCCATAT+AGG + chr5.4:7859322-7859341 MS.gene015341:intron 20.0%
!! TGGTAAAGATAATTACAAAT+AGG + chr5.4:7861597-7861616 MS.gene015341:intron 20.0%
!!! AAACATATTCTAAGGTATAA+TGG - chr5.4:7861066-7861085 None:intergenic 20.0%
!!! CATTTTTTTTCTTTTCTATC+AGG + chr5.4:7862789-7862808 MS.gene015341:intron 20.0%
!!! TACATCAGTACTTATATTTT+TGG + chr5.4:7860652-7860671 MS.gene015341:intron 20.0%
!!! TGATTTTATTCTTTTCATAC+AGG + chr5.4:7860308-7860327 MS.gene015341:intron 20.0%
!!! TTGACAGTTAAATTCTAAAA+TGG + chr5.4:7862126-7862145 MS.gene015341:intron 20.0%
!!! TTGTATAATTCACTTCATTT+TGG - chr5.4:7862604-7862623 None:intergenic 20.0%
! AACATCCTAATTTCTTAGTA+TGG - chr5.4:7862104-7862123 None:intergenic 25.0%
! AACCTAATTAAACACTTGTT+TGG + chr5.4:7861644-7861663 MS.gene015341:intron 25.0%
! ATGCATGTAAAACATCTTTA+GGG - chr5.4:7862283-7862302 None:intergenic 25.0%
! ATGTCATTATTGTTCTTGTT+GGG + chr5.4:7861492-7861511 MS.gene015341:CDS 25.0%
! CAAAGCTGGATTTAATATTA+AGG + chr5.4:7862474-7862493 MS.gene015341:CDS 25.0%
! CATGAAATGAAACTAGATTA+AGG - chr5.4:7862222-7862241 None:intergenic 25.0%
! CTAAGAATAACTTATGAAAC+AGG - chr5.4:7860241-7860260 None:intergenic 25.0%
! CTTAATATTAAATCCAGCTT+TGG - chr5.4:7862476-7862495 None:intergenic 25.0%
! GATAAACTAAAAATAGCTCA+TGG + chr5.4:7860204-7860223 MS.gene015341:intron 25.0%
! GATTTAATATTAAGGTAACC+TGG + chr5.4:7862482-7862501 MS.gene015341:intron 25.0%
! GGAAAATGTTATTCAAAAAG+AGG - chr5.4:7859184-7859203 None:intergenic 25.0%
! TAAACTTAAAGTCTTCATCT+GGG + chr5.4:7862947-7862966 MS.gene015341:CDS 25.0%
! TATGCATGTAAAACATCTTT+AGG - chr5.4:7862284-7862303 None:intergenic 25.0%
! TGAAATAATGTTAAGTTTGC+AGG - chr5.4:7861016-7861035 None:intergenic 25.0%
! TGCAACATCATATACAATAA+CGG - chr5.4:7860835-7860854 None:intergenic 25.0%
! TGTAAGTACAATACAATACT+AGG - chr5.4:7860889-7860908 None:intergenic 25.0%
!! AGTAAAATTGTGCATTTTTC+AGG - chr5.4:7859374-7859393 None:intergenic 25.0%
!! ATTAAGTTGTTTATGGAAAC+AGG - chr5.4:7860071-7860090 None:intergenic 25.0%
!! GTGCTTAATTAAGTTGTTTA+TGG - chr5.4:7860078-7860097 None:intergenic 25.0%
!! TATAATTCACTTCATTTTGG+TGG - chr5.4:7862601-7862620 None:intergenic 25.0%
!!! CAAAGATTTTAACAGACATT+AGG - chr5.4:7861370-7861389 None:intergenic 25.0%
!!! TTTACTTTGTTTTTGGATTC+TGG + chr5.4:7860708-7860727 MS.gene015341:intron 25.0%
!!! TTTTGTTATTAAGTTCAGTC+AGG - chr5.4:7859263-7859282 None:intergenic 25.0%
ACAATACAATACTAGGTGAA+AGG - chr5.4:7860882-7860901 None:intergenic 30.0%
ACTGAATACATATGGAAAGA+GGG - chr5.4:7862565-7862584 None:intergenic 30.0%
AGCCAAACAAGTGTTTAATT+AGG - chr5.4:7861649-7861668 None:intergenic 30.0%
AGGGTAATTGGATAATATAC+AGG - chr5.4:7861797-7861816 None:intergenic 30.0%
ATCATATACAATAACGGCTA+CGG - chr5.4:7860829-7860848 None:intergenic 30.0%
ATGTTGCAAGTAAGTTGTTT+GGG + chr5.4:7860847-7860866 MS.gene015341:intron 30.0%
ATTCATATGTCAGATGTCAA+GGG - chr5.4:7861816-7861835 None:intergenic 30.0%
CGAATCTGAACTTATTAAAC+TGG - chr5.4:7859599-7859618 None:intergenic 30.0%
CTTTCCTAAATACAACAAAG+TGG + chr5.4:7861438-7861457 MS.gene015341:CDS 30.0%
GAATATTGAAGATACCTGAT+AGG - chr5.4:7859116-7859135 None:intergenic 30.0%
GATGTCATTATTGTTCTTGT+TGG + chr5.4:7861491-7861510 MS.gene015341:CDS 30.0%
GTAAACTTAAAGTCTTCATC+TGG + chr5.4:7862946-7862965 MS.gene015341:CDS 30.0%
GTTACAGCTTAAACTAGATA+TGG + chr5.4:7862057-7862076 MS.gene015341:intron 30.0%
GTTTAATTAGGTTCTTATGC+AGG - chr5.4:7861637-7861656 None:intergenic 30.0%
TACCTTAGAATATGTTTGGA+TGG + chr5.4:7861069-7861088 MS.gene015341:intron 30.0%
TACTGAATACATATGGAAAG+AGG - chr5.4:7862566-7862585 None:intergenic 30.0%
TATTCATATGTCAGATGTCA+AGG - chr5.4:7861817-7861836 None:intergenic 30.0%
TCATTCATTCACACTATAGA+AGG - chr5.4:7861339-7861358 None:intergenic 30.0%
TTAAACTAGATATGGCTAGT+TGG + chr5.4:7862065-7862084 MS.gene015341:intron 30.0%
TTAGAATATGTTTGGATGGA+GGG + chr5.4:7861073-7861092 MS.gene015341:intron 30.0%
TTAGGATATGTTTAGGAGAT+GGG - chr5.4:7861212-7861231 None:intergenic 30.0%
! ACAATCTGAAACTAACTGTT+CGG + chr5.4:7862350-7862369 MS.gene015341:intron 30.0%
! ATTGGGCCGATATTTAAAAT+TGG + chr5.4:7860014-7860033 MS.gene015341:intron 30.0%
! CAACTCAGTGAAATAGATTT+TGG - chr5.4:7859487-7859506 None:intergenic 30.0%
! CAATCCACTTTGTTGTATTT+AGG - chr5.4:7861445-7861464 None:intergenic 30.0%
! CCTTTCATTTTGTTCTGATA+GGG + chr5.4:7860746-7860765 MS.gene015341:intron 30.0%
! CTGCTAATTTAGCTTCTTAT+TGG + chr5.4:7860968-7860987 MS.gene015341:intron 30.0%
! GTACTTACACACAATCTTTT+TGG + chr5.4:7860900-7860919 MS.gene015341:intron 30.0%
! TCCTTTCATTTTGTTCTGAT+AGG + chr5.4:7860745-7860764 MS.gene015341:intron 30.0%
!! GGATTCTGTTTCTACTTATT+TGG + chr5.4:7862636-7862655 MS.gene015341:intron 30.0%
!! TACTGCTTGCTGTATATTTA+TGG + chr5.4:7862306-7862325 MS.gene015341:intron 30.0%
!! TCTTATTTCCTTTTCTACCA+AGG + chr5.4:7861922-7861941 MS.gene015341:intron 30.0%
!! TTACACACAATCTTTTTGGT+TGG + chr5.4:7860904-7860923 MS.gene015341:intron 30.0%
!!! ACTTTTTTGGACATCTTTAC+AGG + chr5.4:7862846-7862865 MS.gene015341:intron 30.0%
AAACTGATCTCGTTGAAAAG+AGG + chr5.4:7861519-7861538 MS.gene015341:CDS 35.0%
AACAACTTATATGTGTGCAG+TGG - chr5.4:7861848-7861867 None:intergenic 35.0%
AAGATTCAAAACCACCACAT+TGG - chr5.4:7859666-7859685 None:intergenic 35.0%
AAGTACAAACTGGTGTTCTT+GGG + chr5.4:7859028-7859047 MS.gene015341:CDS 35.0%
AGTAGAGAGTCGATAATAAG+AGG - chr5.4:7862663-7862682 None:intergenic 35.0%
AGTGTTTAACTAATCCCACT+TGG + chr5.4:7860485-7860504 MS.gene015341:intron 35.0%
ATATGGAAAGAGGGAGAAAA+GGG - chr5.4:7862556-7862575 None:intergenic 35.0%
ATCATTATGCTCCTTTCCTT+AGG - chr5.4:7861230-7861249 None:intergenic 35.0%
ATCTAACCTGATCAGATGAA+TGG + chr5.4:7859637-7859656 MS.gene015341:intron 35.0%
ATGATGCAGAAGAATGATCA+TGG - chr5.4:7862772-7862791 None:intergenic 35.0%
ATGGAGTACATGTGAAAAGA+TGG - chr5.4:7862011-7862030 None:intergenic 35.0%
ATTAGGTTCTTATGCAGGTA+TGG - chr5.4:7861632-7861651 None:intergenic 35.0%
ATTCTCAGCAAAAACAGTTG+TGG - chr5.4:7861685-7861704 None:intergenic 35.0%
CAATCTCAAACTCAATCAAG+TGG + chr5.4:7862976-7862995 MS.gene015341:CDS 35.0%
CATCTCCTAAACATATCCTA+AGG + chr5.4:7861211-7861230 MS.gene015341:intron 35.0%
CCCTATCAGAACAAAATGAA+AGG - chr5.4:7860749-7860768 None:intergenic 35.0%
CCTAAACATATCCTAAGGAA+AGG + chr5.4:7861216-7861235 MS.gene015341:intron 35.0%
CCTTTCCTTAGGATATGTTT+AGG - chr5.4:7861219-7861238 None:intergenic 35.0%
CTCCATCCAAACATATTCTA+AGG - chr5.4:7861074-7861093 None:intergenic 35.0%
CTCTCCATGATAGGTTAAAA+AGG - chr5.4:7860176-7860195 None:intergenic 35.0%
CTTAGAATATGTTTGGATGG+AGG + chr5.4:7861072-7861091 MS.gene015341:intron 35.0%
CTTAGGATATGTTTAGGAGA+TGG - chr5.4:7861213-7861232 None:intergenic 35.0%
GATGTTGCAAGTAAGTTGTT+TGG + chr5.4:7860846-7860865 MS.gene015341:intron 35.0%
GGAGACCATACTAAGAAATT+AGG + chr5.4:7862096-7862115 MS.gene015341:intron 35.0%
GGAGATTGAATGCTAAATCA+AGG - chr5.4:7859436-7859455 None:intergenic 35.0%
GTTTAAGCTGTAACCAAGAA+CGG - chr5.4:7862051-7862070 None:intergenic 35.0%
TAAATTCGACAACACCTATC+AGG + chr5.4:7859099-7859118 MS.gene015341:CDS 35.0%
TAGAAGACAGTCTTGATCAT+CGG + chr5.4:7862189-7862208 MS.gene015341:intron 35.0%
TCTGATAAACCTGTTCTTGT+TGG + chr5.4:7861402-7861421 MS.gene015341:intron 35.0%
TGTGGCAATTCAGTTTGAAT+TGG + chr5.4:7859932-7859951 MS.gene015341:intron 35.0%
TGTTGCAAGTAAGTTGTTTG+GGG + chr5.4:7860848-7860867 MS.gene015341:intron 35.0%
TTAACTAATCCCACTTGGTT+TGG + chr5.4:7860490-7860509 MS.gene015341:intron 35.0%
TTCTGCAAAACAAGAAGACT+TGG + chr5.4:7862918-7862937 MS.gene015341:CDS 35.0%
TTGAATCGAATCGTACCTTT+GGG + chr5.4:7859778-7859797 MS.gene015341:intron 35.0%
TTGTATTTAGGAAAGTCTGC+CGG - chr5.4:7861433-7861452 None:intergenic 35.0%
! ACACTTGTTAACTTCAGTAC+AGG - chr5.4:7860470-7860489 None:intergenic 35.0%
! AGCAGCAATTTTCCGAAAAA+GGG - chr5.4:7862872-7862891 None:intergenic 35.0%
! AGCTCCTTTTTAACCTATCA+TGG + chr5.4:7860169-7860188 MS.gene015341:intron 35.0%
! ATCATGGATTGAGACTGAAT+TGG - chr5.4:7862756-7862775 None:intergenic 35.0%
! CCATATAGGATTTGAAATCG+CGG + chr5.4:7859336-7859355 MS.gene015341:intron 35.0%
! CTAAATTAGCCTACCCAAAT+TGG - chr5.4:7860591-7860610 None:intergenic 35.0%
! CTTTCTGCACAAATTCGTTT+TGG + chr5.4:7859510-7859529 MS.gene015341:intron 35.0%
! CTTTTCATACAGGCAACAAT+CGG + chr5.4:7860318-7860337 MS.gene015341:intron 35.0%
! GATGGAGAAAACATGCATTT+TGG - chr5.4:7861993-7862012 None:intergenic 35.0%
! GTAATGTTGAGCGAGATTTT+AGG + chr5.4:7859895-7859914 MS.gene015341:intron 35.0%
! GTCGGGCCAATTTTAAATAT+CGG - chr5.4:7860023-7860042 None:intergenic 35.0%
! TAAATTGTTGGGTTTGGAGT+TGG + chr5.4:7861877-7861896 MS.gene015341:intron 35.0%
! TTTTGAATCTTTGTGACCTC+TGG + chr5.4:7859675-7859694 MS.gene015341:intron 35.0%
! TTTTGGCATACAATCTCCAA+GGG - chr5.4:7859470-7859489 None:intergenic 35.0%
!! ATGGTTTGTTGTAGAGTAGA+GGG - chr5.4:7861289-7861308 None:intergenic 35.0%
!! ATTTTAGTGACATGAGCAGT+CGG - chr5.4:7859737-7859756 None:intergenic 35.0%
!! ATTTTGGCATACAATCTCCA+AGG - chr5.4:7859471-7859490 None:intergenic 35.0%
!! TACAACAAAGTGGATTGAAG+AGG + chr5.4:7861448-7861467 MS.gene015341:CDS 35.0%
AAAATTGCTGCTGCATTACC+TGG + chr5.4:7862880-7862899 MS.gene015341:CDS 40.0%
AACCTATCATGGAGAGCTTA+TGG + chr5.4:7860180-7860199 MS.gene015341:intron 40.0%
AACTTCAGTACAGGATACTG+AGG - chr5.4:7860461-7860480 None:intergenic 40.0%
AAGGCAAGATTCTCTAGCAT+GGG + chr5.4:7861941-7861960 MS.gene015341:intron 40.0%
AATTGTGATCGGAATCGCTT+TGG + chr5.4:7861710-7861729 MS.gene015341:intron 40.0%
ACTGCAGATGTATGGAAAGA+GGG - chr5.4:7862520-7862539 None:intergenic 40.0%
AGAGTCCCCTTTATATAGTG+AGG + chr5.4:7859809-7859828 MS.gene015341:intron 40.0%
ATAGAAGGAGTGATCGTGAA+TGG - chr5.4:7861324-7861343 None:intergenic 40.0%
CATATGGAAAGAGGGAGAAA+AGG - chr5.4:7862557-7862576 None:intergenic 40.0%
CCGCGATTTCAAATCCTATA+TGG - chr5.4:7859339-7859358 None:intergenic 40.0%
CTATGACAGGATTCAGGATT+AGG - chr5.4:7862172-7862191 None:intergenic 40.0%
CTGCTCATGTCACTAAAATG+CGG + chr5.4:7859738-7859757 MS.gene015341:intron 40.0%
CTTAGTATGGTCTCCAAGAT+AGG - chr5.4:7862091-7862110 None:intergenic 40.0%
GAAGATAGTGTTTCCATTCC+AGG - chr5.4:7862901-7862920 None:intergenic 40.0%
GAAGTACAAACTGGTGTTCT+TGG + chr5.4:7859027-7859046 MS.gene015341:CDS 40.0%
GAATCTTGCCTTGGTAGAAA+AGG - chr5.4:7861933-7861952 None:intergenic 40.0%
GTCACTAAAATGCGGAGAAA+GGG + chr5.4:7859746-7859765 MS.gene015341:intron 40.0%
GTTGAATCGAATCGTACCTT+TGG + chr5.4:7859777-7859796 MS.gene015341:intron 40.0%
TAAAATGGTGCATTGCATGC+AGG + chr5.4:7862141-7862160 MS.gene015341:intron 40.0%
TAAACCTGTTCTTGTTGGAC+AGG + chr5.4:7861407-7861426 MS.gene015341:intron 40.0%
TACACTATGCAGTGTTTGCA+TGG + chr5.4:7859558-7859577 MS.gene015341:intron 40.0%
TACTGCAGATGTATGGAAAG+AGG - chr5.4:7862521-7862540 None:intergenic 40.0%
TCAAGACTGTCTTCTATGAC+AGG - chr5.4:7862185-7862204 None:intergenic 40.0%
TCACATGTACTCCATTTAGC+CGG + chr5.4:7862016-7862035 MS.gene015341:intron 40.0%
TCACTAAAATGCGGAGAAAG+GGG + chr5.4:7859747-7859766 MS.gene015341:intron 40.0%
TCTAGATTGAAGAACACTGC+TGG - chr5.4:7862711-7862730 None:intergenic 40.0%
TGAATCGAATCGTACCTTTG+GGG + chr5.4:7859779-7859798 MS.gene015341:intron 40.0%
TGGAAACAGGATACTTGTTC+CGG - chr5.4:7860058-7860077 None:intergenic 40.0%
TGTCACTAAAATGCGGAGAA+AGG + chr5.4:7859745-7859764 MS.gene015341:intron 40.0%
TGTCAGATGTCAAGGGTAAT+TGG - chr5.4:7861809-7861828 None:intergenic 40.0%
TGTCTTCTATGACAGGATTC+AGG - chr5.4:7862178-7862197 None:intergenic 40.0%
! AATCTTTGTGACCTCTGGAA+CGG + chr5.4:7859680-7859699 MS.gene015341:intron 40.0%
! CAGCAGCAATTTTCCGAAAA+AGG - chr5.4:7862873-7862892 None:intergenic 40.0%
! CATCTTTACAGGCCCTTTTT+CGG + chr5.4:7862857-7862876 MS.gene015341:intron 40.0%
! TAAGTTCAGTCAGGCGTTTT+TGG - chr5.4:7859254-7859273 None:intergenic 40.0%
! TACAGGAGAAAAGAGTGCAA+TGG - chr5.4:7861780-7861799 None:intergenic 40.0%
! TTTGTTGTAGAGTAGAGGGT+TGG - chr5.4:7861285-7861304 None:intergenic 40.0%
!! CATGGTTTGTTGTAGAGTAG+AGG - chr5.4:7861290-7861309 None:intergenic 40.0%
!! CGAGATTTTAGGAGCAACAT+GGG + chr5.4:7859906-7859925 MS.gene015341:intron 40.0%
!!! GATGATGCTGGTTTTACCAA+CGG - chr5.4:7859062-7859081 None:intergenic 40.0%
!!! TTGCACTTGCTGATTTTCCT+TGG + chr5.4:7861748-7861767 MS.gene015341:intron 40.0%
ACCAACAAGCCAAACCAAGT+GGG - chr5.4:7860502-7860521 None:intergenic 45.0%
AGACAAGTCTCCATAGAGGA+CGG + chr5.4:7862403-7862422 MS.gene015341:intron 45.0%
AGTGATCGTGAATGGAGCTT+CGG - chr5.4:7861316-7861335 None:intergenic 45.0%
ATATCGGCCCAATGCAACAT+TGG - chr5.4:7860007-7860026 None:intergenic 45.0%
ATGTCACTGCAAATCGCATC+AGG - chr5.4:7859407-7859426 None:intergenic 45.0%
ATTCTGTGAGCTGTTGCAGT+AGG + chr5.4:7861037-7861056 MS.gene015341:intron 45.0%
ATTGAAACTAGCGCCAAAGC+TGG + chr5.4:7862460-7862479 MS.gene015341:CDS 45.0%
CAAGGCAAGATTCTCTAGCA+TGG + chr5.4:7861940-7861959 MS.gene015341:intron 45.0%
CACATGTACTCCATTTAGCC+GGG + chr5.4:7862017-7862036 MS.gene015341:intron 45.0%
CACTAAAATGCGGAGAAAGG+GGG + chr5.4:7859748-7859767 MS.gene015341:intron 45.0%
CATGCTAGAGAATCTTGCCT+TGG - chr5.4:7861942-7861961 None:intergenic 45.0%
CGCCTCCTCACTATATAAAG+GGG - chr5.4:7859817-7859836 None:intergenic 45.0%
CTCCATAAGCTCTCCATGAT+AGG - chr5.4:7860185-7860204 None:intergenic 45.0%
CTGTAACCAAGAACGGAAAC+AGG - chr5.4:7862044-7862063 None:intergenic 45.0%
GAACTGTTCGACTACAGTTG+TGG + chr5.4:7860379-7860398 MS.gene015341:CDS 45.0%
GAGCGATTACTGCAGATGTA+TGG - chr5.4:7862528-7862547 None:intergenic 45.0%
GAGTGCAATGGAAAGAACCA+AGG - chr5.4:7861768-7861787 None:intergenic 45.0%
GATGAGTCTCTGATGTAGCT+TGG - chr5.4:7860807-7860826 None:intergenic 45.0%
GATTCTCTAGCATGGGATGT+AGG + chr5.4:7861948-7861967 MS.gene015341:intron 45.0%
GCGCCTCCTCACTATATAAA+GGG - chr5.4:7859818-7859837 None:intergenic 45.0%
GTCCCCTTTATATAGTGAGG+AGG + chr5.4:7859812-7859831 MS.gene015341:intron 45.0%
TACTTCGCCAAAGCTGATAC+TGG - chr5.4:7859013-7859032 None:intergenic 45.0%
TATCGGCCCAATGCAACATT+GGG - chr5.4:7860006-7860025 None:intergenic 45.0%
TATGTTTGGATGGAGGGTCT+TGG + chr5.4:7861079-7861098 MS.gene015341:intron 45.0%
TCTCCAAAGTGAATCACCCT+TGG + chr5.4:7859451-7859470 MS.gene015341:intron 45.0%
TCTCCAAGGGTGATTCACTT+TGG - chr5.4:7859457-7859476 None:intergenic 45.0%
TGCGCCTCCTCACTATATAA+AGG - chr5.4:7859819-7859838 None:intergenic 45.0%
TGTTCTGATAGGGATACAGC+TGG + chr5.4:7860756-7860775 MS.gene015341:intron 45.0%
! AGCTTTGGCGAAGTACAAAC+TGG + chr5.4:7859018-7859037 MS.gene015341:CDS 45.0%
! ATTCTCCCTGGTGCCAATTT+GGG + chr5.4:7860575-7860594 MS.gene015341:intron 45.0%
! TATGGCTAGTTGGCCTATCT+TGG + chr5.4:7862075-7862094 MS.gene015341:intron 45.0%
!! GCGAGATTTTAGGAGCAACA+TGG + chr5.4:7859905-7859924 MS.gene015341:intron 45.0%
!! TTGGTTTGGCTTGTTGGTGT+TGG + chr5.4:7860504-7860523 MS.gene015341:intron 45.0%
!!! TGCTGGTTTTACCAACGGAT+TGG - chr5.4:7859057-7859076 None:intergenic 45.0%
!!! TATTTTTCTATTTTAAATTA+AGG + chr5.4:7861122-7861141 MS.gene015341:intron 5.0%
ACAAGTCTCCATAGAGGACG+GGG + chr5.4:7862405-7862424 MS.gene015341:CDS 50.0%
ACTCTTTGTACACCCCTGTG+AGG - chr5.4:7859977-7859996 None:intergenic 50.0%
ACTGTGCCTCTCAACGGTTA+TGG + chr5.4:7859859-7859878 MS.gene015341:intron 50.0%
AGAGGGAAAAAAGTGAGCCC+AGG - chr5.4:7862503-7862522 None:intergenic 50.0%
ATGAATGGCGTCCAATGTGG+TGG + chr5.4:7859652-7859671 MS.gene015341:intron 50.0%
ATGCGGAGAAAGGGGGTTTA+TGG + chr5.4:7859755-7859774 MS.gene015341:intron 50.0%
CACCAACAAGCCAAACCAAG+TGG - chr5.4:7860503-7860522 None:intergenic 50.0%
CAGATGAATGGCGTCCAATG+TGG + chr5.4:7859649-7859668 MS.gene015341:intron 50.0%
CTCTTTGTACACCCCTGTGA+GGG - chr5.4:7859976-7859995 None:intergenic 50.0%
CTGCAGACAAGTCTCCATAG+AGG + chr5.4:7862399-7862418 MS.gene015341:intron 50.0%
CTTGTTCCGGACTGAGCAAA+TGG - chr5.4:7860045-7860064 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr5.4:7860554-7860573 None:intergenic 50.0%
GACAAGTCTCCATAGAGGAC+GGG + chr5.4:7862404-7862423 MS.gene015341:intron 50.0%
GCTCAACATTACGATCGCTG+CGG - chr5.4:7859887-7859906 None:intergenic 50.0%
GGACTCTTCACAATCCCCAA+AGG - chr5.4:7859796-7859815 None:intergenic 50.0%
GGATGGCCCAATGTTGCATT+GGG + chr5.4:7859997-7860016 MS.gene015341:intron 50.0%
TAGGAGCAACATGGGTGATG+TGG + chr5.4:7859914-7859933 MS.gene015341:intron 50.0%
TGATAGGGATACAGCTGGAC+AGG + chr5.4:7860761-7860780 MS.gene015341:intron 50.0%
TGATTGTTGCGACCCTCACA+GGG + chr5.4:7859961-7859980 MS.gene015341:intron 50.0%
TGCTGCTGCATTACCTGGAA+TGG + chr5.4:7862885-7862904 MS.gene015341:CDS 50.0%
TGGACGCCATTCATCTGATC+AGG - chr5.4:7859646-7859665 None:intergenic 50.0%
TGGATGGCCCAATGTTGCAT+TGG + chr5.4:7859996-7860015 MS.gene015341:intron 50.0%
TGTGAGGGTCGCAACAATCA+GGG - chr5.4:7859961-7859980 None:intergenic 50.0%
TTCCGGACTGAGCAAATGGT+CGG - chr5.4:7860041-7860060 None:intergenic 50.0%
TTCTTGGGTGACCAATCCGT+TGG + chr5.4:7859043-7859062 MS.gene015341:CDS 50.0%
TTTGGATGGAGGGTCTTGGT+GGG + chr5.4:7861083-7861102 MS.gene015341:intron 50.0%
! AGGGGTGTACAAAGAGTGGA+TGG + chr5.4:7859980-7859999 MS.gene015341:intron 50.0%
! AGGTTCGATTCGATTCTCCC+TGG + chr5.4:7860563-7860582 MS.gene015341:intron 50.0%
! CATGAAGCGAGTGATGATGC+TGG - chr5.4:7859074-7859093 None:intergenic 50.0%
! GATTCTCCCTGGTGCCAATT+TGG + chr5.4:7860574-7860593 MS.gene015341:intron 50.0%
! GCACAGTGTGCCACTAACAA+CGG - chr5.4:7859846-7859865 None:intergenic 50.0%
! TCACAGGGGTGTACAAAGAG+TGG + chr5.4:7859976-7859995 MS.gene015341:intron 50.0%
! TGAAGAGGTGCGAACAGAGA+GGG + chr5.4:7861463-7861482 MS.gene015341:CDS 50.0%
! TTGAAGAGGTGCGAACAGAG+AGG + chr5.4:7861462-7861481 MS.gene015341:CDS 50.0%
! TTTTGCTTCCCCGTCCTCTA+TGG - chr5.4:7862416-7862435 None:intergenic 50.0%
!! TCCCACTTGGTTTGGCTTGT+TGG + chr5.4:7860498-7860517 MS.gene015341:intron 50.0%
!! TGAATGGAGCTTCGGTGTCA+TGG - chr5.4:7861308-7861327 None:intergenic 50.0%
!! TGGCTTGTTGGTGTTGGCTT+GGG + chr5.4:7860510-7860529 MS.gene015341:intron 50.0%
!! TTGGCTTGTTGGTGTTGGCT+TGG + chr5.4:7860509-7860528 MS.gene015341:intron 50.0%
AGCCTACCCAAATTGGCACC+AGG - chr5.4:7860584-7860603 None:intergenic 55.0%
CCAAGAACGGAAACAGGACC+CGG - chr5.4:7862038-7862057 None:intergenic 55.0%
CCTGTTCTTGTTGGACAGGC+CGG + chr5.4:7861411-7861430 MS.gene015341:intron 55.0%
CTGATTGTTGCGACCCTCAC+AGG + chr5.4:7859960-7859979 MS.gene015341:intron 55.0%
CTGTGAGGGTCGCAACAATC+AGG - chr5.4:7859962-7859981 None:intergenic 55.0%
GATTGTTGCGACCCTCACAG+GGG + chr5.4:7859962-7859981 MS.gene015341:intron 55.0%
GCCTACCCAAATTGGCACCA+GGG - chr5.4:7860583-7860602 None:intergenic 55.0%
GCGGATCCATAACCGTTGAG+AGG - chr5.4:7859868-7859887 None:intergenic 55.0%
GGAAACAGGACCCGGCTAAA+TGG - chr5.4:7862030-7862049 None:intergenic 55.0%
GTTTGGATGGAGGGTCTTGG+TGG + chr5.4:7861082-7861101 MS.gene015341:intron 55.0%
TCCGGACTGAGCAAATGGTC+GGG - chr5.4:7860040-7860059 None:intergenic 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr5.4:7860551-7860570 None:intergenic 55.0%
TGGCACACTGTGCCTCTCAA+CGG + chr5.4:7859853-7859872 MS.gene015341:intron 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr5.4:7860536-7860555 MS.gene015341:intron 55.0%
TTGGATGGAGGGTCTTGGTG+GGG + chr5.4:7861084-7861103 MS.gene015341:intron 55.0%
! GAAGAGGTGCGAACAGAGAG+GGG + chr5.4:7861464-7861483 MS.gene015341:CDS 55.0%
! TCCCTGGTGCCAATTTGGGT+AGG + chr5.4:7860579-7860598 MS.gene015341:intron 55.0%
! TCGGAGTGTCTGCACTATGC+AGG - chr5.4:7859718-7859737 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr5.4:7860537-7860556 None:intergenic 55.0%
!! CTTTGTGACCTCTGGAACGG+CGG + chr5.4:7859683-7859702 MS.gene015341:intron 55.0%
!! TTGGTGTTGGCTTGGGACCT+TGG + chr5.4:7860517-7860536 MS.gene015341:intron 55.0%
!! TTTGTGACCTCTGGAACGGC+GGG + chr5.4:7859684-7859703 MS.gene015341:intron 55.0%
CCGGCCTGTCCAACAAGAAC+AGG - chr5.4:7861414-7861433 None:intergenic 60.0%
CCGGGTCCTGTTTCCGTTCT+TGG + chr5.4:7862035-7862054 MS.gene015341:intron 60.0%
GCCCGACCATTTGCTCAGTC+CGG + chr5.4:7860036-7860055 MS.gene015341:intron 60.0%
GGCGCAAGAGCCGTTGTTAG+TGG + chr5.4:7859833-7859852 MS.gene015341:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr5.4:7860543-7860562 MS.gene015341:intron 60.0%
TCTTGGTGGGGAGAGGAGGA+AGG + chr5.4:7861096-7861115 MS.gene015341:intron 60.0%
!! TTGTGACCTCTGGAACGGCG+GGG + chr5.4:7859685-7859704 MS.gene015341:intron 60.0%
AGGGTCTTGGTGGGGAGAGG+AGG + chr5.4:7861092-7861111 MS.gene015341:intron 65.0%
TGGAGGGTCTTGGTGGGGAG+AGG + chr5.4:7861089-7861108 MS.gene015341:intron 65.0%
!! TGTGACCTCTGGAACGGCGG+GGG + chr5.4:7859686-7859705 MS.gene015341:intron 65.0%
ACACACCCCCGCCGTTCCAG+AGG - chr5.4:7859694-7859713 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 7859004 7863011 7859004 ID=MS.gene015341
chr5.4 mRNA 7859004 7863011 7859004 ID=MS.gene015341.t1;Parent=MS.gene015341
chr5.4 exon 7859004 7859120 7859004 ID=MS.gene015341.t1.exon1;Parent=MS.gene015341.t1
chr5.4 CDS 7859004 7859120 7859004 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4 exon 7860330 7860400 7860330 ID=MS.gene015341.t1.exon2;Parent=MS.gene015341.t1
chr5.4 CDS 7860330 7860400 7860330 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4 exon 7860767 7860855 7860767 ID=MS.gene015341.t1.exon3;Parent=MS.gene015341.t1
chr5.4 CDS 7860767 7860855 7860767 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4 exon 7861429 7861540 7861429 ID=MS.gene015341.t1.exon4;Parent=MS.gene015341.t1
chr5.4 CDS 7861429 7861540 7861429 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4 exon 7862405 7862495 7862405 ID=MS.gene015341.t1.exon5;Parent=MS.gene015341.t1
chr5.4 CDS 7862405 7862495 7862405 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4 exon 7862868 7863011 7862868 ID=MS.gene015341.t1.exon6;Parent=MS.gene015341.t1
chr5.4 CDS 7862868 7863011 7862868 ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
Gene Sequence

>MS.gene015341

ATGGCGCCAGTATCAGCTTTGGCGAAGTACAAACTGGTGTTCTTGGGTGACCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGTATCTTCAATATTCATTCATTTCTCAATATGATTTGATTTTATTGGATTCACTTGCGTCCCTCTTTTTGAATAACATTTTCCATTTATTATAGTATAGTATTCATAATGTTGGATTTGACTCTACTTGACCAAAAACGCCTGACTGAACTTAATAACAAAAATGAATAACTGCTCAAACTCTTTTTTATATCTTTCATTCTCTTATAATTTGATCCATATAGGATTTGAAATCGCGGTCGTGTTATGATCCTGAAAAATGCACAATTTTACTGTTAAATACGCCTGATGCGATTTGCAGTGACATCAAATACCTTGATTTAGCATTCAATCTCCAAAGTGAATCACCCTTGGAGATTGTATGCCAAAATCTATTTCACTGAGTTGTTGCTTTCTGCACAAATTCGTTTTGGATTTTTTTTTTTTTACTATTATGTGTACACTATGCAGTGTTTGCATGGTATGCTTGTAATAATCCAGTTTAATAAGTTCAGATTCGAATTACTTTTTAGTATTGATCTAACCTGATCAGATGAATGGCGTCCAATGTGGTGGTTTTGAATCTTTGTGACCTCTGGAACGGCGGGGGTGTGTACCTGCATAGTGCAGACACTCCGACTGCTCATGTCACTAAAATGCGGAGAAAGGGGGTTTATGGTTGAATCGAATCGTACCTTTGGGGATTGTGAAGAGTCCCCTTTATATAGTGAGGAGGCGCAAGAGCCGTTGTTAGTGGCACACTGTGCCTCTCAACGGTTATGGATCCGCAGCGATCGTAATGTTGAGCGAGATTTTAGGAGCAACATGGGTGATGTGGCAATTCAGTTTGAATTGGTCTCCCTGATTGTTGCGACCCTCACAGGGGTGTACAAAGAGTGGATGGCCCAATGTTGCATTGGGCCGATATTTAAAATTGGCCCGACCATTTGCTCAGTCCGGAACAAGTATCCTGTTTCCATAAACAACTTAATTAAGCACTTATCATATAAATACTTAAGTCTAACAAAAGTTAAAATCAAGTCAAACTGTTTTCATGTAAGTTATAAATAAGCTCCTTTTTAACCTATCATGGAGAGCTTATGGAGATAAACTAAAAATAGCTCATGGAAATGTTATAACCTGTTTCATAAGTTATTCTTAGCAAACATACAAATGCTTATATCAGTAGATAAGCTCCTTAACTTATTATGATTTTATTCTTTTCATACAGGCAACAATCGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTACAGTTGTGGTAAGAATTAATATACTAGATCAACATCTCGTACTATAAACATGATAGCAAAATATTCCTCAGTATCCTGTACTGAAGTTAACAAGTGTTTAACTAATCCCACTTGGTTTGGCTTGTTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCCTCAAGGTCTCAGGTTCGATTCGATTCTCCCTGGTGCCAATTTGGGTAGGCTAATTTAGCTTCTTCAAAAAAAGTGTTTATCTAATAAACATTTAGTTTCTACATCAGTACTTATATTTTTGGTGCTGAAGTTTATTTTTTTAATATTTTTATTTTTTTACTTTGTTTTTGGATTCTGGTTTTGAACTGTTCATCCTTTCATTTTGTTCTGATAGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGAGACTCATCCGTAGCCGTTATTGTATATGATGTTGCAAGTAAGTTGTTTGGGGCTTGTTTTCCTTTCACCTAGTATTGTATTGTACTTACACACAATCTTTTTGGTTGGACACATCTTTTGCTTCTTAGCAGTTGTTAATCTGATCGAAGCTGCTAATTTAGCTTCTTATTGGTTTTTAACATTTTGATAGTAAACCTGCAAACTTAACATTATTTCAAATTCTGTGAGCTGTTGCAGTAGGATGCCATTATACCTTAGAATATGTTTGGATGGAGGGTCTTGGTGGGGAGAGGAGGAAGGACTTATTTTTCTATTTTAAATTAAGGAAGCTACAAAATGTTTCTAAGATGTTACTCCTTCATTTTTTTGAATAGAATTAGCTCTGCAAAACCCATCTCCTAAACATATCCTAAGGAAAGGAGCATAATGATAAAGTGCATTAGCTCTTTAACTCTGTTTATAACCAACCCTCTACTCTACAACAAACCATGACACCGAAGCTCCATTCACGATCACTCCTTCTATAGTGTGAATGAATGATGCATTGTCCTAATGTCTGTTAAAATCTTTGTTAATAACACTTTCTGATAAACCTGTTCTTGTTGGACAGGCCGGCAGACTTTCCTAAATACAACAAAGTGGATTGAAGAGGTGCGAACAGAGAGGGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTCGTTGAAAAGAGGTAATGTGCCATGAATGAAAATAATGATTTAAGCTAGAATTAAAATTAGGAACTATTGGTAAAGATAATTACAAATAGGAATTATTAACCATACCTGCATAAGAACCTAATTAAACACTTGTTTGGCTAGTTTTTCTGAAACCACAACTGTTTTTGCTGAGAATTATTAAATTGTGATCGGAATCGCTTTGGAAATTTTCAGACTGATTGCACTTGCTGATTTTCCTTGGTTCTTTCCATTGCACTCTTTTCTCCTGTATATTATCCAATTACCCTTGACATCTGACATATGAATAAGTACTTGCCACTGCACACATATAAGTTGTTCAAAATAAATAAATTGTTGGGTTTGGAGTTGGAAAACTACTTTGAATTGATAATTCTTATTTCCTTTTCTACCAAGGCAAGATTCTCTAGCATGGGATGTAGGCATGCTTACTACTTGACTGCCAAAATGCATGTTTTCTCCATCTTTTCACATGTACTCCATTTAGCCGGGTCCTGTTTCCGTTCTTGGTTACAGCTTAAACTAGATATGGCTAGTTGGCCTATCTTGGAGACCATACTAAGAAATTAGGATGTTGCTTGACAGTTAAATTCTAAAATGGTGCATTGCATGCAGGTTGATCCTAATCCTGAATCCTGTCATAGAAGACAGTCTTGATCATCGGTGAAAAGCCTTAATCTAGTTTCATTTCATGTTTGAAAGAGTTCTCAGTTTTTTTCTGTGCTAACTTGACCCTAAAGATGTTTTACATGCATAGTTACTGCTTGCTGTATATTTATGGAGATGTGTGCTATTGTTACTAACAATCTGAAACTAACTGTTCGGTTTTACTTAATTTTCTTTGTGCGAGTCTGCAGACAAGTCTCCATAGAGGACGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTTATTGAAACTAGCGCCAAAGCTGGATTTAATATTAAGGTAACCTGGGCTCACTTTTTTCCCTCTTTCCATACATCTGCAGTAATCGCTCTGTTTCCCTTTTCTCCCTCTTTCCATATGTATTCAGTAAATTATCTGTTTCCACCAAAATGAAGTGAATTATACAAAATTATGAGATTGGATTCTGTTTCTACTTATTTGGACCTCTTATTATCGACTCTCTACTTGTTATAGTTTTAGTGATTTTCACTCCAGCAGTGTTCTTCAATCTAGAAAATTCATTTTGCTTGCATTTGCCAATTCAGTCTCAATCCATGATCATTCTTCTGCATCATTTTTTTTCTTTTCTATCAGGGAGATAACTAATGTCAATCTTATTTTGTTCTAATACTTTTTTGGACATCTTTACAGGCCCTTTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACTTGGTTGATGTAAACTTAAAGTCTTCATCTGGGAATGCTCAATCTCAAACTCAATCAAGTGGATGTTCTTGTTGA
Protein sequence

>MS.gene015341.t1

MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDLVDVNLKSSSGNAQSQTQSSGCSC