AlfalfaGEDB | MS.gene015341

M. sativa cultivar XinJiangDaYe / MS.gene015341

KEGG: K07893
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015341.t1	XP_003611426.2	100	207	0	0	1	207	1	207	5.40E-106	393.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015341.t1	O80501	92.8	208	14	1	1	207	1	208	5.9e-101	368.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015341.t1	G7JYQ0	100.0	207	0	0	1	207	1	207	3.9e-106	393.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000342	MS.gene015341	PPI
MS.gene000694	MS.gene015341	PPI
MS.gene001096	MS.gene015341	PPI
MS.gene003158	MS.gene015341	PPI
MS.gene003766	MS.gene015341	PPI
MS.gene004991	MS.gene015341	PPI
MS.gene005920	MS.gene015341	PPI
MS.gene006652	MS.gene015341	PPI
MS.gene008351	MS.gene015341	PPI
MS.gene009580	MS.gene015341	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015341.t1	MTR_5g013900	100.000	207	0	0	1	207	1	207	1.49e-153	424
MS.gene015341.t1	MTR_4g098950	91.304	207	17	1	1	207	1	206	1.43e-140	391
MS.gene015341.t1	MTR_8g090215	84.058	207	33	0	1	207	1	207	1.28e-130	365
MS.gene015341.t1	MTR_3g087160	84.058	207	32	1	1	207	1	206	5.28e-129	362
MS.gene015341.t1	MTR_1g094220	47.561	164	85	1	9	171	31	194	1.12e-50	163
MS.gene015341.t1	MTR_1g094220	47.170	159	83	1	9	166	31	189	2.93e-48	157
MS.gene015341.t1	MTR_1g094220	47.436	156	81	1	9	163	31	186	2.37e-47	154
MS.gene015341.t1	MTR_1g094220	47.436	156	81	1	9	163	31	186	3.63e-47	155
MS.gene015341.t1	MTR_8g031680	44.099	161	90	0	10	170	7	167	5.03e-47	154
MS.gene015341.t1	MTR_3g064390	40.341	176	105	0	11	186	12	187	1.06e-46	152

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015341.t1	AT2G44610	92.788	208	14	1	1	207	1	208	6.55e-143	397
MS.gene015341.t1	AT5G10260	86.957	207	27	0	1	207	1	207	1.48e-133	373
MS.gene015341.t1	AT2G22290	83.092	207	35	0	1	207	1	207	2.09e-127	357
MS.gene015341.t1	AT4G39890	76.636	214	43	3	1	207	1	214	2.87e-114	325
MS.gene015341.t1	AT5G64990	76.733	202	40	2	10	207	8	206	1.58e-106	305
MS.gene015341.t1	AT5G64990	74.163	209	40	3	10	207	8	213	9.28e-104	298
MS.gene015341.t1	AT3G54840	47.561	164	85	1	9	171	33	196	2.48e-50	162
MS.gene015341.t1	AT3G54840	47.826	161	83	1	12	171	2	162	1.57e-49	159
MS.gene015341.t1	AT4G19640	42.857	161	92	0	11	171	12	172	3.90e-48	156
MS.gene015341.t1	AT3G54840	48.077	156	80	1	9	163	33	188	4.15e-48	156

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Find 39 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCTGCTGCATTACC+TGG	0.441428	5.4:+7862880	MS.gene015341:CDS
AAACTGATCTCGTTGAAAAG+AGG	0.533179	5.4:+7861519	MS.gene015341:CDS
AAGTACAAACTGGTGTTCTT+GGG	0.481954	5.4:+7859028	MS.gene015341:CDS
AATGGCGCCAGTATCAGCTT+TGG	0.514481	5.4:+7859003	None:intergenic
ACAAGTCTCCATAGAGGACG+GGG	0.622928	5.4:+7862405	MS.gene015341:CDS
AGACAAGTCTCCATAGAGGA+CGG	0.619191	5.4:+7862403	MS.gene015341:intron
AGCTTTGGCGAAGTACAAAC+TGG	0.499226	5.4:+7859018	MS.gene015341:CDS
ATCATATACAATAACGGCTA+CGG	0.543543	5.4:-7860826	None:intergenic
ATGTCATTATTGTTCTTGTT+GGG	0.447960	5.4:+7861492	MS.gene015341:CDS
ATTGAAACTAGCGCCAAAGC+TGG	0.491491	5.4:+7862460	MS.gene015341:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATACAATACTAGGTGAA+AGG	-	chr5.4:7860882-7860901	None:intergenic	30.0%
ACTGAATACATATGGAAAGA+GGG	-	chr5.4:7862565-7862584	None:intergenic	30.0%
AGCCAAACAAGTGTTTAATT+AGG	-	chr5.4:7861649-7861668	None:intergenic	30.0%
AGGGTAATTGGATAATATAC+AGG	-	chr5.4:7861797-7861816	None:intergenic	30.0%
ATCATATACAATAACGGCTA+CGG	-	chr5.4:7860829-7860848	None:intergenic	30.0%
ATGTTGCAAGTAAGTTGTTT+GGG	+	chr5.4:7860847-7860866	MS.gene015341:intron	30.0%
ATTCATATGTCAGATGTCAA+GGG	-	chr5.4:7861816-7861835	None:intergenic	30.0%
CGAATCTGAACTTATTAAAC+TGG	-	chr5.4:7859599-7859618	None:intergenic	30.0%
CTTTCCTAAATACAACAAAG+TGG	+	chr5.4:7861438-7861457	MS.gene015341:CDS	30.0%
GAATATTGAAGATACCTGAT+AGG	-	chr5.4:7859116-7859135	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	7859004	7863011	7859004	ID=MS.gene015341
chr5.4	mRNA	7859004	7863011	7859004	ID=MS.gene015341.t1;Parent=MS.gene015341
chr5.4	exon	7859004	7859120	7859004	ID=MS.gene015341.t1.exon1;Parent=MS.gene015341.t1
chr5.4	CDS	7859004	7859120	7859004	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4	exon	7860330	7860400	7860330	ID=MS.gene015341.t1.exon2;Parent=MS.gene015341.t1
chr5.4	CDS	7860330	7860400	7860330	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4	exon	7860767	7860855	7860767	ID=MS.gene015341.t1.exon3;Parent=MS.gene015341.t1
chr5.4	CDS	7860767	7860855	7860767	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4	exon	7861429	7861540	7861429	ID=MS.gene015341.t1.exon4;Parent=MS.gene015341.t1
chr5.4	CDS	7861429	7861540	7861429	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4	exon	7862405	7862495	7862405	ID=MS.gene015341.t1.exon5;Parent=MS.gene015341.t1
chr5.4	CDS	7862405	7862495	7862405	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1
chr5.4	exon	7862868	7863011	7862868	ID=MS.gene015341.t1.exon6;Parent=MS.gene015341.t1
chr5.4	CDS	7862868	7863011	7862868	ID=cds.MS.gene015341.t1;Parent=MS.gene015341.t1

Gene Sequence

>MS.gene015341

ATGGCGCCAGTATCAGCTTTGGCGAAGTACAAACTGGTGTTCTTGGGTGACCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGTATCTTCAATATTCATTCATTTCTCAATATGATTTGATTTTATTGGATTCACTTGCGTCCCTCTTTTTGAATAACATTTTCCATTTATTATAGTATAGTATTCATAATGTTGGATTTGACTCTACTTGACCAAAAACGCCTGACTGAACTTAATAACAAAAATGAATAACTGCTCAAACTCTTTTTTATATCTTTCATTCTCTTATAATTTGATCCATATAGGATTTGAAATCGCGGTCGTGTTATGATCCTGAAAAATGCACAATTTTACTGTTAAATACGCCTGATGCGATTTGCAGTGACATCAAATACCTTGATTTAGCATTCAATCTCCAAAGTGAATCACCCTTGGAGATTGTATGCCAAAATCTATTTCACTGAGTTGTTGCTTTCTGCACAAATTCGTTTTGGATTTTTTTTTTTTTACTATTATGTGTACACTATGCAGTGTTTGCATGGTATGCTTGTAATAATCCAGTTTAATAAGTTCAGATTCGAATTACTTTTTAGTATTGATCTAACCTGATCAGATGAATGGCGTCCAATGTGGTGGTTTTGAATCTTTGTGACCTCTGGAACGGCGGGGGTGTGTACCTGCATAGTGCAGACACTCCGACTGCTCATGTCACTAAAATGCGGAGAAAGGGGGTTTATGGTTGAATCGAATCGTACCTTTGGGGATTGTGAAGAGTCCCCTTTATATAGTGAGGAGGCGCAAGAGCCGTTGTTAGTGGCACACTGTGCCTCTCAACGGTTATGGATCCGCAGCGATCGTAATGTTGAGCGAGATTTTAGGAGCAACATGGGTGATGTGGCAATTCAGTTTGAATTGGTCTCCCTGATTGTTGCGACCCTCACAGGGGTGTACAAAGAGTGGATGGCCCAATGTTGCATTGGGCCGATATTTAAAATTGGCCCGACCATTTGCTCAGTCCGGAACAAGTATCCTGTTTCCATAAACAACTTAATTAAGCACTTATCATATAAATACTTAAGTCTAACAAAAGTTAAAATCAAGTCAAACTGTTTTCATGTAAGTTATAAATAAGCTCCTTTTTAACCTATCATGGAGAGCTTATGGAGATAAACTAAAAATAGCTCATGGAAATGTTATAACCTGTTTCATAAGTTATTCTTAGCAAACATACAAATGCTTATATCAGTAGATAAGCTCCTTAACTTATTATGATTTTATTCTTTTCATACAGGCAACAATCGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTACAGTTGTGGTAAGAATTAATATACTAGATCAACATCTCGTACTATAAACATGATAGCAAAATATTCCTCAGTATCCTGTACTGAAGTTAACAAGTGTTTAACTAATCCCACTTGGTTTGGCTTGTTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCCTCAAGGTCTCAGGTTCGATTCGATTCTCCCTGGTGCCAATTTGGGTAGGCTAATTTAGCTTCTTCAAAAAAAGTGTTTATCTAATAAACATTTAGTTTCTACATCAGTACTTATATTTTTGGTGCTGAAGTTTATTTTTTTAATATTTTTATTTTTTTACTTTGTTTTTGGATTCTGGTTTTGAACTGTTCATCCTTTCATTTTGTTCTGATAGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGAGACTCATCCGTAGCCGTTATTGTATATGATGTTGCAAGTAAGTTGTTTGGGGCTTGTTTTCCTTTCACCTAGTATTGTATTGTACTTACACACAATCTTTTTGGTTGGACACATCTTTTGCTTCTTAGCAGTTGTTAATCTGATCGAAGCTGCTAATTTAGCTTCTTATTGGTTTTTAACATTTTGATAGTAAACCTGCAAACTTAACATTATTTCAAATTCTGTGAGCTGTTGCAGTAGGATGCCATTATACCTTAGAATATGTTTGGATGGAGGGTCTTGGTGGGGAGAGGAGGAAGGACTTATTTTTCTATTTTAAATTAAGGAAGCTACAAAATGTTTCTAAGATGTTACTCCTTCATTTTTTTGAATAGAATTAGCTCTGCAAAACCCATCTCCTAAACATATCCTAAGGAAAGGAGCATAATGATAAAGTGCATTAGCTCTTTAACTCTGTTTATAACCAACCCTCTACTCTACAACAAACCATGACACCGAAGCTCCATTCACGATCACTCCTTCTATAGTGTGAATGAATGATGCATTGTCCTAATGTCTGTTAAAATCTTTGTTAATAACACTTTCTGATAAACCTGTTCTTGTTGGACAGGCCGGCAGACTTTCCTAAATACAACAAAGTGGATTGAAGAGGTGCGAACAGAGAGGGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTCGTTGAAAAGAGGTAATGTGCCATGAATGAAAATAATGATTTAAGCTAGAATTAAAATTAGGAACTATTGGTAAAGATAATTACAAATAGGAATTATTAACCATACCTGCATAAGAACCTAATTAAACACTTGTTTGGCTAGTTTTTCTGAAACCACAACTGTTTTTGCTGAGAATTATTAAATTGTGATCGGAATCGCTTTGGAAATTTTCAGACTGATTGCACTTGCTGATTTTCCTTGGTTCTTTCCATTGCACTCTTTTCTCCTGTATATTATCCAATTACCCTTGACATCTGACATATGAATAAGTACTTGCCACTGCACACATATAAGTTGTTCAAAATAAATAAATTGTTGGGTTTGGAGTTGGAAAACTACTTTGAATTGATAATTCTTATTTCCTTTTCTACCAAGGCAAGATTCTCTAGCATGGGATGTAGGCATGCTTACTACTTGACTGCCAAAATGCATGTTTTCTCCATCTTTTCACATGTACTCCATTTAGCCGGGTCCTGTTTCCGTTCTTGGTTACAGCTTAAACTAGATATGGCTAGTTGGCCTATCTTGGAGACCATACTAAGAAATTAGGATGTTGCTTGACAGTTAAATTCTAAAATGGTGCATTGCATGCAGGTTGATCCTAATCCTGAATCCTGTCATAGAAGACAGTCTTGATCATCGGTGAAAAGCCTTAATCTAGTTTCATTTCATGTTTGAAAGAGTTCTCAGTTTTTTTCTGTGCTAACTTGACCCTAAAGATGTTTTACATGCATAGTTACTGCTTGCTGTATATTTATGGAGATGTGTGCTATTGTTACTAACAATCTGAAACTAACTGTTCGGTTTTACTTAATTTTCTTTGTGCGAGTCTGCAGACAAGTCTCCATAGAGGACGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTTATTGAAACTAGCGCCAAAGCTGGATTTAATATTAAGGTAACCTGGGCTCACTTTTTTCCCTCTTTCCATACATCTGCAGTAATCGCTCTGTTTCCCTTTTCTCCCTCTTTCCATATGTATTCAGTAAATTATCTGTTTCCACCAAAATGAAGTGAATTATACAAAATTATGAGATTGGATTCTGTTTCTACTTATTTGGACCTCTTATTATCGACTCTCTACTTGTTATAGTTTTAGTGATTTTCACTCCAGCAGTGTTCTTCAATCTAGAAAATTCATTTTGCTTGCATTTGCCAATTCAGTCTCAATCCATGATCATTCTTCTGCATCATTTTTTTTCTTTTCTATCAGGGAGATAACTAATGTCAATCTTATTTTGTTCTAATACTTTTTTGGACATCTTTACAGGCCCTTTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACTTGGTTGATGTAAACTTAAAGTCTTCATCTGGGAATGCTCAATCTCAAACTCAATCAAGTGGATGTTCTTGTTGA

Protein sequence

>MS.gene015341.t1

MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDLVDVNLKSSSGNAQSQTQSSGCSC