AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21497

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21497.t1 MTR_5g013900 100.000 207 0 0 1 207 1 207 1.49e-153 424
MS.gene21497.t1 MTR_4g098950 91.304 207 17 1 1 207 1 206 1.43e-140 391
MS.gene21497.t1 MTR_8g090215 84.058 207 33 0 1 207 1 207 1.28e-130 365
MS.gene21497.t1 MTR_3g087160 84.058 207 32 1 1 207 1 206 5.28e-129 362
MS.gene21497.t1 MTR_1g094220 47.561 164 85 1 9 171 31 194 1.12e-50 163
MS.gene21497.t1 MTR_1g094220 47.170 159 83 1 9 166 31 189 2.93e-48 157
MS.gene21497.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 2.37e-47 154
MS.gene21497.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 3.63e-47 155
MS.gene21497.t1 MTR_8g031680 44.099 161 90 0 10 170 7 167 5.03e-47 154
MS.gene21497.t1 MTR_3g064390 40.341 176 105 0 11 186 12 187 1.06e-46 152
MS.gene21497.t1 MTR_5g076590 39.773 176 106 0 11 186 12 187 1.81e-46 152
MS.gene21497.t1 MTR_8g103550 43.750 160 90 0 11 170 11 170 1.46e-45 150
MS.gene21497.t1 MTR_2g102060 41.618 173 97 1 3 171 4 176 2.69e-45 149
MS.gene21497.t1 MTR_8g031870 44.304 158 88 0 10 167 7 164 5.46e-45 148
MS.gene21497.t1 MTR_4g064897 36.893 206 117 2 10 206 13 214 7.79e-45 148
MS.gene21497.t1 MTR_2g005500 43.478 161 91 0 10 170 10 170 1.78e-44 147
MS.gene21497.t1 MTR_3g069510 35.922 206 120 2 10 206 13 215 8.21e-44 146
MS.gene21497.t1 MTR_0262s0050 41.401 157 92 0 10 166 16 172 1.71e-43 145
MS.gene21497.t1 MTR_8g031660 42.857 161 92 0 10 170 7 167 1.89e-43 145
MS.gene21497.t1 MTR_8g089985 40.909 154 91 0 10 163 18 171 5.07e-43 144
MS.gene21497.t1 MTR_2g005510 41.290 155 91 0 10 164 16 170 6.58e-43 144
MS.gene21497.t1 MTR_3g086980 39.610 154 93 0 10 163 17 170 1.86e-42 142
MS.gene21497.t1 MTR_6g021790 35.354 198 119 3 10 204 7 198 1.91e-42 142
MS.gene21497.t1 MTR_4g012940 39.216 204 111 3 11 207 10 207 2.55e-42 142
MS.gene21497.t1 MTR_1g052475 40.127 157 94 0 10 166 16 172 2.79e-42 142
MS.gene21497.t1 MTR_7g051940 42.208 154 89 0 10 163 14 167 2.86e-42 142
MS.gene21497.t1 MTR_2g027660 36.264 182 110 1 10 191 7 182 3.86e-42 141
MS.gene21497.t1 MTR_8g027220 34.951 206 126 1 10 207 27 232 4.78e-42 142
MS.gene21497.t1 MTR_8g006970 37.563 197 117 2 10 205 23 214 5.48e-42 141
MS.gene21497.t1 MTR_4g079350 34.715 193 108 1 10 184 14 206 8.63e-42 140
MS.gene21497.t1 MTR_4g088090 33.679 193 110 1 10 184 14 206 8.82e-42 140
MS.gene21497.t1 MTR_8g036220 33.000 200 130 1 10 205 17 216 1.57e-41 140
MS.gene21497.t1 MTR_7g081700 40.373 161 96 0 10 170 9 169 3.06e-41 139
MS.gene21497.t1 MTR_4g069850 38.756 209 104 6 11 207 10 206 5.51e-41 138
MS.gene21497.t1 MTR_8g031830 41.830 153 89 0 10 162 7 159 8.50e-41 137
MS.gene21497.t1 MTR_2g014990 38.854 157 96 0 10 166 14 170 9.00e-41 138
MS.gene21497.t1 MTR_8g006970 40.373 161 96 0 10 170 9 169 1.09e-40 137
MS.gene21497.t1 MTR_1g078200 39.490 157 95 0 10 166 15 171 1.24e-40 138
MS.gene21497.t1 MTR_2g075950 37.580 157 98 0 10 166 14 170 1.49e-40 137
MS.gene21497.t1 MTR_7g405790 39.490 157 95 0 10 166 16 172 3.68e-40 137
MS.gene21497.t1 MTR_2g101890 37.745 204 114 3 11 207 12 209 3.76e-40 136
MS.gene21497.t1 MTR_6g079550 40.909 154 91 0 10 163 13 166 1.65e-39 135
MS.gene21497.t1 MTR_2g083860 36.943 157 99 0 10 166 14 170 1.86e-39 135
MS.gene21497.t1 MTR_1g115325 36.869 198 121 3 11 205 17 213 2.22e-39 134
MS.gene21497.t1 MTR_1g068740 37.143 210 125 4 3 205 5 214 3.02e-39 134
MS.gene21497.t1 MTR_1g068730 37.143 210 125 4 3 205 5 214 5.46e-39 133
MS.gene21497.t1 MTR_2g090865 34.694 196 109 2 10 187 12 206 3.70e-38 131
MS.gene21497.t1 MTR_7g100020 41.139 158 92 1 11 167 17 174 3.65e-37 129
MS.gene21497.t1 MTR_2g096550 36.634 202 115 5 11 205 17 212 3.75e-37 129
MS.gene21497.t1 MTR_8g092020 36.538 208 109 6 11 207 14 209 5.53e-37 128
MS.gene21497.t1 MTR_4g063160 36.683 199 122 3 11 205 17 215 5.86e-37 128
MS.gene21497.t1 MTR_3g064390 43.200 125 71 0 11 135 12 136 1.47e-36 125
MS.gene21497.t1 MTR_8g093740 36.869 198 119 4 10 205 14 207 8.12e-36 125
MS.gene21497.t1 MTR_1g097420 33.333 204 123 4 11 207 10 207 7.75e-35 122
MS.gene21497.t1 MTR_4g099470 36.207 174 106 1 32 205 7 175 9.29e-35 121
MS.gene21497.t1 MTR_7g117910 40.476 126 75 0 10 135 21 146 9.95e-35 122
MS.gene21497.t1 MTR_3g096350 35.922 206 110 5 10 205 13 206 5.14e-34 120
MS.gene21497.t1 MTR_1g062760 39.375 160 94 3 10 167 15 173 5.74e-33 118
MS.gene21497.t1 MTR_7g103070 36.875 160 99 2 10 167 17 176 1.87e-32 117
MS.gene21497.t1 MTR_1g090717 40.000 160 93 3 10 166 16 175 1.92e-32 116
MS.gene21497.t1 MTR_8g107070 37.662 154 96 0 10 163 15 168 2.79e-32 117
MS.gene21497.t1 MTR_1g029450 34.673 199 126 4 10 206 18 214 8.33e-32 115
MS.gene21497.t1 MTR_1g097420 31.707 205 125 5 10 207 38 234 3.26e-31 114
MS.gene21497.t1 MTR_1g068730 37.956 137 81 1 2 134 4 140 3.13e-29 107
MS.gene21497.t1 MTR_1g068740 38.519 135 79 1 2 132 4 138 4.70e-29 107
MS.gene21497.t1 MTR_8g093740 34.911 169 105 3 40 206 10 175 3.79e-26 99.4
MS.gene21497.t1 MTR_3g107707 31.977 172 106 3 10 177 14 178 4.20e-26 100
MS.gene21497.t1 MTR_3g107717 31.977 172 106 3 10 177 14 178 4.38e-26 100
MS.gene21497.t1 MTR_3g107713 33.333 168 109 3 10 177 14 178 4.72e-26 100
MS.gene21497.t1 MTR_6g039490 29.412 204 129 4 11 207 10 205 1.64e-25 99.4
MS.gene21497.t1 MTR_3g096350 40.945 127 70 4 10 132 13 138 2.03e-25 96.7
MS.gene21497.t1 MTR_3g096350 42.063 126 70 3 10 133 13 137 8.54e-25 95.5
MS.gene21497.t1 MTR_7g103070 40.351 114 66 2 56 167 7 120 7.55e-23 90.5
MS.gene21497.t1 MTR_2g090875 35.758 165 92 5 11 163 8 170 4.17e-22 89.4
MS.gene21497.t1 MTR_3g078260 35.758 165 92 5 11 163 10 172 7.21e-22 89.4
MS.gene21497.t1 MTR_4g088055 35.152 165 93 5 11 163 8 170 2.01e-21 87.8
MS.gene21497.t1 MTR_2g005500 31.056 161 71 1 10 170 10 130 7.34e-21 85.5
MS.gene21497.t1 MTR_8g075240 32.727 165 97 5 11 163 8 170 3.08e-20 84.7
MS.gene21497.t1 MTR_6g087980 33.939 165 95 5 11 163 8 170 3.67e-20 84.7
MS.gene21497.t1 MTR_5g022600 32.727 165 97 5 11 163 8 170 3.68e-20 84.3
MS.gene21497.t1 MTR_4g113620 30.952 168 104 4 10 177 14 169 6.72e-20 84.0
MS.gene21497.t1 MTR_4g073250 32.121 165 98 5 11 163 8 170 4.12e-19 81.6
MS.gene21497.t1 MTR_1452s0010 46.154 78 42 0 29 106 1 78 5.20e-19 79.0
MS.gene21497.t1 MTR_5g092060 27.485 171 118 3 5 170 100 269 2.45e-16 75.9
MS.gene21497.t1 MTR_3g078260 38.596 114 67 3 11 123 10 121 2.99e-16 72.8
MS.gene21497.t1 MTR_1686s0010 39.744 78 47 0 29 106 1 78 6.28e-16 70.5
MS.gene21497.t1 MTR_4g047870 24.260 169 122 2 7 170 89 256 2.91e-12 64.3
MS.gene21497.t1 MTR_8g031810 26.733 101 60 1 10 110 7 93 5.22e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21497.t1 AT2G44610 92.788 208 14 1 1 207 1 208 6.55e-143 397
MS.gene21497.t1 AT5G10260 86.957 207 27 0 1 207 1 207 1.48e-133 373
MS.gene21497.t1 AT2G22290 83.092 207 35 0 1 207 1 207 2.09e-127 357
MS.gene21497.t1 AT4G39890 76.636 214 43 3 1 207 1 214 2.87e-114 325
MS.gene21497.t1 AT5G64990 76.733 202 40 2 10 207 8 206 1.58e-106 305
MS.gene21497.t1 AT5G64990 74.163 209 40 3 10 207 8 213 9.28e-104 298
MS.gene21497.t1 AT3G54840 47.561 164 85 1 9 171 33 196 2.48e-50 162
MS.gene21497.t1 AT3G54840 47.826 161 83 1 12 171 2 162 1.57e-49 159
MS.gene21497.t1 AT4G19640 42.857 161 92 0 11 171 12 172 3.90e-48 156
MS.gene21497.t1 AT3G54840 48.077 156 80 1 9 163 33 188 4.15e-48 156
MS.gene21497.t1 AT5G45130 42.857 161 92 0 11 171 12 172 4.68e-48 156
MS.gene21497.t1 AT5G45130 42.138 159 92 0 13 171 22 180 4.90e-46 151
MS.gene21497.t1 AT4G17170 34.928 209 117 2 10 205 7 209 4.84e-44 146
MS.gene21497.t1 AT1G09630 41.401 157 92 0 10 166 13 169 5.21e-44 146
MS.gene21497.t1 AT1G07410 41.401 157 92 0 10 166 13 169 8.76e-44 145
MS.gene21497.t1 AT3G11730 37.811 201 113 2 10 205 9 202 9.48e-44 145
MS.gene21497.t1 AT4G17160 39.506 162 98 0 9 170 6 167 1.58e-43 145
MS.gene21497.t1 AT5G65270 38.854 157 96 0 10 166 18 174 1.72e-43 145
MS.gene21497.t1 AT5G59150 40.373 161 96 0 10 170 13 173 2.27e-43 145
MS.gene21497.t1 AT3G12160 41.401 157 92 0 10 166 16 172 5.68e-43 144
MS.gene21497.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene21497.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene21497.t1 AT3G15060 37.853 177 107 1 10 186 14 187 2.08e-42 142
MS.gene21497.t1 AT4G39990 38.217 157 97 0 10 166 18 174 2.32e-42 142
MS.gene21497.t1 AT1G05810 37.624 202 122 2 10 207 13 214 2.65e-42 142
MS.gene21497.t1 AT5G60860 34.715 193 108 1 10 184 14 206 2.94e-42 142
MS.gene21497.t1 AT1G05810 37.931 203 120 3 10 207 59 260 6.39e-42 142
MS.gene21497.t1 AT1G02130 40.373 161 96 0 10 170 9 169 1.33e-41 140
MS.gene21497.t1 AT4G35860 34.848 198 120 3 10 204 7 198 1.58e-41 140
MS.gene21497.t1 AT2G43130 36.000 200 123 2 10 205 13 211 2.20e-41 139
MS.gene21497.t1 AT2G31680 40.127 157 94 0 10 166 13 169 2.42e-41 140
MS.gene21497.t1 AT5G47520 39.490 157 95 0 10 166 15 171 2.53e-41 140
MS.gene21497.t1 AT5G47200 36.735 196 119 1 10 205 9 199 2.67e-41 139
MS.gene21497.t1 AT4G17530 37.113 194 122 0 10 203 9 202 2.72e-41 139
MS.gene21497.t1 AT3G18820 38.278 209 105 5 11 207 10 206 6.79e-41 138
MS.gene21497.t1 AT3G07410 42.208 154 89 0 10 163 13 166 8.55e-41 138
MS.gene21497.t1 AT5G47960 39.610 154 93 0 10 163 16 169 9.45e-41 138
MS.gene21497.t1 AT1G28550 38.854 157 96 0 10 166 14 170 1.27e-40 138
MS.gene21497.t1 AT1G52280 38.235 204 112 3 11 207 10 206 4.04e-40 136
MS.gene21497.t1 AT1G16920 36.628 172 106 1 10 181 14 182 5.27e-40 136
MS.gene21497.t1 AT1G18200 40.909 154 91 0 10 163 14 167 5.85e-40 136
MS.gene21497.t1 AT4G18430 33.816 207 120 3 10 205 14 214 1.66e-39 135
MS.gene21497.t1 AT1G73640 38.961 154 94 0 10 163 14 167 1.12e-38 133
MS.gene21497.t1 AT2G33870 37.580 157 98 0 10 166 14 170 1.34e-38 132
MS.gene21497.t1 AT5G45750 35.669 157 101 0 10 166 14 170 2.94e-38 132
MS.gene21497.t1 AT1G06400 36.943 157 99 0 10 166 14 170 4.48e-38 131
MS.gene21497.t1 AT3G16100 37.745 204 113 3 11 207 10 206 4.87e-38 130
MS.gene21497.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene21497.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene21497.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene21497.t1 AT1G01200 40.764 157 91 2 10 164 29 185 8.98e-38 131
MS.gene21497.t1 AT5G59840 36.041 197 124 2 11 205 17 213 1.07e-37 130
MS.gene21497.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene21497.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene21497.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene21497.t1 AT4G19640 42.400 125 72 0 11 135 12 136 4.77e-37 126
MS.gene21497.t1 AT4G18800 35.032 157 102 0 10 166 14 170 5.64e-37 128
MS.gene21497.t1 AT5G03520 35.377 212 131 3 1 206 3 214 9.15e-37 128
MS.gene21497.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene21497.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene21497.t1 AT4G19640 42.400 125 72 0 11 135 12 136 5.55e-36 125
MS.gene21497.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene21497.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene21497.t1 AT3G09900 39.037 187 109 2 1 182 3 189 1.28e-35 125
MS.gene21497.t1 AT1G22740 37.321 209 104 8 11 207 10 203 2.38e-34 121
MS.gene21497.t1 AT5G39620 34.112 214 112 6 9 207 5 204 9.79e-34 120
MS.gene21497.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene21497.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene21497.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene21497.t1 AT2G21880 37.725 167 91 3 11 167 11 174 5.42e-33 118
MS.gene21497.t1 AT4G09720 33.333 204 122 5 11 207 10 206 6.01e-33 117
MS.gene21497.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene21497.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene21497.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene21497.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene21497.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene21497.t1 AT4G09720 32.536 209 122 5 11 207 10 211 1.52e-31 114
MS.gene21497.t1 AT4G35860 36.774 155 89 3 53 204 4 152 5.33e-31 111
MS.gene21497.t1 AT4G09720 31.628 215 122 5 11 207 10 217 8.40e-31 112
MS.gene21497.t1 AT5G59150 40.678 118 70 0 53 170 5 122 5.06e-29 106
MS.gene21497.t1 AT5G03520 34.545 165 106 2 44 206 40 204 4.88e-28 105
MS.gene21497.t1 AT5G20010 31.383 188 112 4 10 187 14 194 1.61e-26 101
MS.gene21497.t1 AT5G20020 31.977 172 106 3 10 177 14 178 2.53e-26 101
MS.gene21497.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene21497.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene21497.t1 AT5G55190 31.977 172 106 3 10 177 14 178 5.62e-26 100
MS.gene21497.t1 AT5G55080 30.994 171 115 3 7 177 11 178 8.06e-26 100
MS.gene21497.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene21497.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene21497.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene21497.t1 AT2G21880 33.533 167 90 4 11 167 11 166 1.63e-23 93.6
MS.gene21497.t1 AT2G44690 33.939 165 95 5 11 163 20 182 9.55e-23 91.7
MS.gene21497.t1 AT3G48040 36.364 165 91 5 11 163 10 172 9.32e-22 89.0
MS.gene21497.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene21497.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene21497.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene21497.t1 AT1G75840 33.939 165 95 5 11 163 8 170 1.09e-20 85.9
MS.gene21497.t1 AT1G20090 33.939 165 95 5 11 163 7 169 1.17e-20 85.9
MS.gene21497.t1 AT5G62880 36.364 165 91 6 11 163 10 172 1.80e-20 85.9
MS.gene21497.t1 AT3G51300 33.333 165 96 5 11 163 8 170 3.33e-20 84.7
MS.gene21497.t1 AT4G35950 33.333 165 96 5 11 163 8 170 6.39e-20 84.0
MS.gene21497.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene21497.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene21497.t1 AT3G48040 35.897 156 86 5 11 154 10 163 7.04e-19 80.5
MS.gene21497.t1 AT4G28950 32.515 163 98 5 11 163 8 168 9.34e-19 80.9
MS.gene21497.t1 AT5G45970 32.530 166 96 6 11 163 8 170 3.41e-18 79.3
MS.gene21497.t1 AT5G62880 38.525 122 72 3 11 131 10 129 6.38e-18 78.6
MS.gene21497.t1 AT5G46025 40.964 83 48 1 85 166 20 102 2.55e-15 69.7
MS.gene21497.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene21497.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene21497.t1 AT3G21700 26.163 172 120 3 5 170 102 272 3.83e-14 69.7
MS.gene21497.t1 AT5G54840 27.108 166 113 5 11 170 103 266 8.86e-14 68.9
MS.gene21497.t1 AT3G51290 32.624 141 81 5 35 163 633 771 1.26e-12 66.6
MS.gene21497.t1 AT3G21700 25.581 172 120 4 5 170 102 271 9.78e-12 63.2

Find 39 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCACTTTGTTGTATTT+AGG 0.181950 5.3:-7103998 None:intergenic
CAAAGCTGGATTTAATATTA+AGG 0.271646 5.3:+7105030 MS.gene21497:CDS
GAAGATAGTGTTTCCATTCC+AGG 0.313624 5.3:-7105455 None:intergenic
CTTAATATTAAATCCAGCTT+TGG 0.362326 5.3:-7105029 None:intergenic
GTAAACTTAAAGTCTTCATC+TGG 0.363108 5.3:+7105503 MS.gene21497:CDS
GAAGTACAAACTGGTGTTCT+TGG 0.394319 5.3:+7101634 MS.gene21497:CDS
GACGTCATTATTGTTCTTGT+TGG 0.396463 5.3:+7104047 MS.gene21497:CDS
TAAATTCGACAACACCTATC+AGG 0.414459 5.3:+7101706 MS.gene21497:CDS
ACGTCATTATTGTTCTTGTT+GGG 0.423449 5.3:+7104048 MS.gene21497:CDS
AAAATTGCTGCTGCATTACC+TGG 0.441428 5.3:+7105437 MS.gene21497:CDS
TGCTGCTGCATTACCTGGAA+TGG 0.467151 5.3:+7105442 MS.gene21497:CDS
AAGTACAAACTGGTGTTCTT+GGG 0.481954 5.3:+7101635 MS.gene21497:CDS
AATGGCGCCAGTGTCAGCTT+TGG 0.485096 5.3:+7101610 None:intergenic
ATTGAAACTAGCGCCAAAGC+TGG 0.491491 5.3:+7105016 MS.gene21497:CDS
TTCTGCAAAACAAGAAGACT+TGG 0.495641 5.3:+7105475 MS.gene21497:CDS
TGATAGGGATACAGCTGGAC+AGG 0.496271 5.3:+7103316 MS.gene21497:intron
AGCTTTGGCGAAGTACAAAC+TGG 0.499226 5.3:+7101625 MS.gene21497:CDS
GAATATTGAAGATACCTGAT+AGG 0.509953 5.3:-7101720 None:intergenic
TGCAACATCATATACAATAA+CGG 0.512280 5.3:-7103387 None:intergenic
GACAAGTCTCCATAGAGGAC+GGG 0.512967 5.3:+7104960 MS.gene21497:intron
CAATCTCAAACTCAATCAAG+TGG 0.517260 5.3:+7105533 MS.gene21497:CDS
GATGAGTCTCTGATGTAGCT+TGG 0.526858 5.3:-7103359 None:intergenic
TGTTCTGATAGGGATACAGC+TGG 0.529034 5.3:+7103311 MS.gene21497:intron
AAACTGATCTCGTTGAAAAG+AGG 0.533179 5.3:+7104075 MS.gene21497:CDS
TTCTTGGGTGACCAATCCGT+TGG 0.534832 5.3:+7101650 MS.gene21497:CDS
ATCATATACAATAACGGCTA+CGG 0.543543 5.3:-7103381 None:intergenic
TGAAGAGGTGCGAACAGAGA+GGG 0.556153 5.3:+7104019 MS.gene21497:CDS
TACTTCGCCAAAGCTGACAC+TGG 0.559582 5.3:-7101617 None:intergenic
TAAACTTAAAGTCTTCATCT+GGG 0.572801 5.3:+7105504 MS.gene21497:CDS
TTGAAGAGGTGCGAACAGAG+AGG 0.586465 5.3:+7104018 MS.gene21497:CDS
CTTTCCTAAATACAACAAAG+TGG 0.589578 5.3:+7103994 MS.gene21497:CDS
GAAGAGGTGCGAACAGAGAG+GGG 0.592899 5.3:+7104020 MS.gene21497:CDS
TTGTATTTAGGAAAGTCTGC+CGG 0.610534 5.3:-7103986 None:intergenic
AGACAAGTCTCCATAGAGGA+CGG 0.619191 5.3:+7104959 MS.gene21497:intron
ACAAGTCTCCATAGAGGACG+GGG 0.622928 5.3:+7104961 MS.gene21497:CDS
TACAACAAAGTGGATTGAAG+AGG 0.628316 5.3:+7104004 MS.gene21497:CDS
GAACTGTTCGACTACAGTTG+TGG 0.643989 5.3:+7102939 MS.gene21497:CDS
CATGAAGCGAGTGATGATGC+TGG 0.674864 5.3:-7101678 None:intergenic
CTGCAGACAAGTCTCCATAG+AGG 0.688178 5.3:+7104955 MS.gene21497:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATCATAATAAGTTA+AGG - chr5.3:7102858-7102877 None:intergenic 10.0%
!! TTCAAAATAAATAAATTGTT+GGG + chr5.3:7104422-7104441 MS.gene21497:intron 10.0%
!!! TTATTTTTTTACTTTGTTTT+TGG + chr5.3:7103256-7103275 MS.gene21497:intron 10.0%
!! ATTATACAAAATTATGAGAT+TGG + chr5.3:7105171-7105190 MS.gene21497:intron 15.0%
!! ATTATGAATACTATAATGAA+AGG - chr5.3:7101816-7101835 None:intergenic 15.0%
!! ATTCTATTCAAAAAAAATGA+AGG - chr5.3:7103732-7103751 None:intergenic 15.0%
!! GTTCAAAATAAATAAATTGT+TGG + chr5.3:7104421-7104440 MS.gene21497:intron 15.0%
!! TTTAAGCTAGAATTAAAATT+AGG + chr5.3:7104124-7104143 MS.gene21497:intron 15.0%
!!! ATTTAGTTCTAATACTTTTT+TGG + chr5.3:7105390-7105409 MS.gene21497:intron 15.0%
!!! TCAATTTGATTTGATTTTAT+TGG + chr5.3:7101756-7101775 MS.gene21497:intron 15.0%
!!! TTGATAGTTAAATTCTAAAA+TGG + chr5.3:7104682-7104701 MS.gene21497:intron 15.0%
!!! TTTTTTTTTCTTTTCTATCA+GGG + chr5.3:7105348-7105367 MS.gene21497:intron 15.0%
!!! TTTTTTTTTTCTTTTCTATC+AGG + chr5.3:7105347-7105366 MS.gene21497:intron 15.0%
!! AAAAGATATAAAACAGAGTT+TGG - chr5.3:7101860-7101879 None:intergenic 20.0%
!! AATAAATAAATTGTTGGGTT+TGG + chr5.3:7104427-7104446 MS.gene21497:intron 20.0%
!! ATTATACCTTAGAATATGTT+TGG + chr5.3:7103620-7103639 MS.gene21497:intron 20.0%
!! ATTTAATATTAAGGTAACCT+GGG + chr5.3:7105039-7105058 MS.gene21497:intron 20.0%
!! CATTATAGTATTCATAATGT+TGG + chr5.3:7101818-7101837 MS.gene21497:intron 20.0%
!! GAAAATGTTATTCAAAAAGA+GGG - chr5.3:7101794-7101813 None:intergenic 20.0%
!! GAATTAAAATTAGGAACTAT+TGG + chr5.3:7104133-7104152 MS.gene21497:intron 20.0%
!! GAGAATTATTAAATTGTGAT+CGG + chr5.3:7104255-7104274 MS.gene21497:intron 20.0%
!! GATAATTTACTGAATACATA+TGG - chr5.3:7105129-7105148 None:intergenic 20.0%
!! TGGTAAAGATAATTACAAAT+AGG + chr5.3:7104153-7104172 MS.gene21497:intron 20.0%
!!! AAACATATTCTAAGGTATAA+TGG - chr5.3:7103621-7103640 None:intergenic 20.0%
!!! TACATCAGTACTTATATTTT+TGG + chr5.3:7103207-7103226 MS.gene21497:intron 20.0%
!!! TGATTTTATTCTTTTCATAC+AGG + chr5.3:7102868-7102887 MS.gene21497:intron 20.0%
! AACATCCTAATTTCTTAGTA+TGG - chr5.3:7104660-7104679 None:intergenic 25.0%
! ATGCATGTAAAACATCTTTA+GGG - chr5.3:7104839-7104858 None:intergenic 25.0%
! CAAAGCTGGATTTAATATTA+AGG + chr5.3:7105030-7105049 MS.gene21497:CDS 25.0%
! CATGAAATGAAACTAGATTA+AGG - chr5.3:7104778-7104797 None:intergenic 25.0%
! CTAAGAATAACTTATGAAAC+AGG - chr5.3:7102801-7102820 None:intergenic 25.0%
! CTTAATATTAAATCCAGCTT+TGG - chr5.3:7105032-7105051 None:intergenic 25.0%
! GATAAACTAAAAATAGCTCA+TGG + chr5.3:7102764-7102783 MS.gene21497:intron 25.0%
! GATTTAATATTAAGGTAACC+TGG + chr5.3:7105038-7105057 MS.gene21497:intron 25.0%
! GGAAAATGTTATTCAAAAAG+AGG - chr5.3:7101795-7101814 None:intergenic 25.0%
! TAAACTTAAAGTCTTCATCT+GGG + chr5.3:7105504-7105523 MS.gene21497:CDS 25.0%
! TATGCATGTAAAACATCTTT+AGG - chr5.3:7104840-7104859 None:intergenic 25.0%
! TGAAATAATGTTAAGTTTGC+AGG - chr5.3:7103571-7103590 None:intergenic 25.0%
! TGCAACATCATATACAATAA+CGG - chr5.3:7103390-7103409 None:intergenic 25.0%
! TGTAAGTACAATACAATTCT+AGG - chr5.3:7103444-7103463 None:intergenic 25.0%
! TTGTATAATTCACTTCATTC+TGG - chr5.3:7105160-7105179 None:intergenic 25.0%
!! AGTAAAATTGTGCATTTTTC+AGG - chr5.3:7101936-7101955 None:intergenic 25.0%
!! ATTAAGTTGTTTATGGAAAC+AGG - chr5.3:7102631-7102650 None:intergenic 25.0%
!! GTGCTTAATTAAGTTGTTTA+TGG - chr5.3:7102638-7102657 None:intergenic 25.0%
!!! CAAAGATTTTAACAGACATT+AGG - chr5.3:7103926-7103945 None:intergenic 25.0%
!!! TTTACTTTGTTTTTGGATTC+TGG + chr5.3:7103263-7103282 MS.gene21497:intron 25.0%
ACAATACAATTCTAGGTGAA+AGG - chr5.3:7103437-7103456 None:intergenic 30.0%
ACGTCATTATTGTTCTTGTT+GGG + chr5.3:7104048-7104067 MS.gene21497:CDS 30.0%
ACTGAATACATATGGAAAGA+GGG - chr5.3:7105121-7105140 None:intergenic 30.0%
AGGGTAATTGGATAATATAC+AGG - chr5.3:7104353-7104372 None:intergenic 30.0%
ATCATATACAATAACGGCTA+CGG - chr5.3:7103384-7103403 None:intergenic 30.0%
ATGTTGCAAGTAAGTTGTTT+GGG + chr5.3:7103402-7103421 MS.gene21497:intron 30.0%
ATTCATATGTCAGATGTCAA+GGG - chr5.3:7104372-7104391 None:intergenic 30.0%
CGAATCTGAACTTATTAAAC+TGG - chr5.3:7102159-7102178 None:intergenic 30.0%
CTTTCCTAAATACAACAAAG+TGG + chr5.3:7103994-7104013 MS.gene21497:CDS 30.0%
GAATATTGAAGATACCTGAT+AGG - chr5.3:7101723-7101742 None:intergenic 30.0%
GTAAACTTAAAGTCTTCATC+TGG + chr5.3:7105503-7105522 MS.gene21497:CDS 30.0%
GTTACAGCTTAAACTAGATA+TGG + chr5.3:7104613-7104632 MS.gene21497:intron 30.0%
TACCTTAGAATATGTTTGGA+TGG + chr5.3:7103624-7103643 MS.gene21497:intron 30.0%
TACTGAATACATATGGAAAG+AGG - chr5.3:7105122-7105141 None:intergenic 30.0%
TATAATTCACTTCATTCTGG+TGG - chr5.3:7105157-7105176 None:intergenic 30.0%
TATTCATATGTCAGATGTCA+AGG - chr5.3:7104373-7104392 None:intergenic 30.0%
TCATTCATTCACACTATAGA+AGG - chr5.3:7103895-7103914 None:intergenic 30.0%
TTAAACTAGATATGGCTAGT+TGG + chr5.3:7104621-7104640 MS.gene21497:intron 30.0%
TTAGAATATGTTTGGATGGA+GGG + chr5.3:7103628-7103647 MS.gene21497:intron 30.0%
TTAGGATATGTTTAGGAGAT+GGG - chr5.3:7103768-7103787 None:intergenic 30.0%
TTGTTAACTTCAGTATACTG+AGG - chr5.3:7103021-7103040 None:intergenic 30.0%
! ACAATCTGAAACTAACTGTT+CGG + chr5.3:7104906-7104925 MS.gene21497:intron 30.0%
! ATAATGTTGAGCGAGATTTT+AGG + chr5.3:7102455-7102474 MS.gene21497:intron 30.0%
! CAACTCAGTGAAATAGATTT+TGG - chr5.3:7102049-7102068 None:intergenic 30.0%
! CAATCCACTTTGTTGTATTT+AGG - chr5.3:7104001-7104020 None:intergenic 30.0%
! CCATATAAGATTTGAAATCG+CGG + chr5.3:7101898-7101917 MS.gene21497:intron 30.0%
! CCTTTCATTTTGTTCTGATA+GGG + chr5.3:7103301-7103320 MS.gene21497:intron 30.0%
! CTGCTAATTTAGCTTCTTAT+TGG + chr5.3:7103523-7103542 MS.gene21497:intron 30.0%
! GTACTTACACACAATCTTTT+TGG + chr5.3:7103455-7103474 MS.gene21497:intron 30.0%
! TCCTTTCATTTTGTTCTGAT+AGG + chr5.3:7103300-7103319 MS.gene21497:intron 30.0%
! TTTTCTGCACAAATTCGTTT+TGG + chr5.3:7102072-7102091 MS.gene21497:intron 30.0%
!! AACTGCTTGCTGTATATTTA+TGG + chr5.3:7104862-7104881 MS.gene21497:intron 30.0%
!! GGATTCTGTTTCTACTTATT+TGG + chr5.3:7105192-7105211 MS.gene21497:intron 30.0%
!! TCTTATTTCCTTTTCTACCA+AGG + chr5.3:7104478-7104497 MS.gene21497:intron 30.0%
!! TTACACACAATCTTTTTGGT+TGG + chr5.3:7103459-7103478 MS.gene21497:intron 30.0%
!!! ACTTTTTTGGACATCTTTAC+AGG + chr5.3:7105403-7105422 MS.gene21497:intron 30.0%
!!! ATTGGGCCGATTTTTAAAAT+CGG + chr5.3:7102574-7102593 MS.gene21497:intron 30.0%
AAACTGATCTCGTTGAAAAG+AGG + chr5.3:7104075-7104094 MS.gene21497:CDS 35.0%
AACAACTTATATGTGTGCAG+TGG - chr5.3:7104404-7104423 None:intergenic 35.0%
AACCTAATTAACCACTCGTT+TGG + chr5.3:7104200-7104219 MS.gene21497:intron 35.0%
AAGATTCAAAACCACCACAT+CGG - chr5.3:7102226-7102245 None:intergenic 35.0%
AAGTACAAACTGGTGTTCTT+GGG + chr5.3:7101635-7101654 MS.gene21497:CDS 35.0%
AGGAGCTTATCTACTGATAT+AGG - chr5.3:7102838-7102857 None:intergenic 35.0%
AGTAGAGAGTCGATAATAAG+AGG - chr5.3:7105219-7105238 None:intergenic 35.0%
AGTGTTTAACTAATCCCACT+TGG + chr5.3:7103040-7103059 MS.gene21497:intron 35.0%
ATATGGAAAGAGGGAGAAAA+GGG - chr5.3:7105112-7105131 None:intergenic 35.0%
ATCATTATGCTCCTTTCCTT+AGG - chr5.3:7103786-7103805 None:intergenic 35.0%
ATCTAACCTGATCAGATGAA+TGG + chr5.3:7102197-7102216 MS.gene21497:intron 35.0%
ATGATGCAGAAGAATGATCA+TGG - chr5.3:7105328-7105347 None:intergenic 35.0%
ATGGAGTACATGTGAAAAGA+TGG - chr5.3:7104567-7104586 None:intergenic 35.0%
ATTAGGTTCTTATGCAGGTA+TGG - chr5.3:7104188-7104207 None:intergenic 35.0%
ATTCTCAGCAAAAACAGTTG+TGG - chr5.3:7104241-7104260 None:intergenic 35.0%
CAATCTCAAACTCAATCAAG+TGG + chr5.3:7105533-7105552 MS.gene21497:CDS 35.0%
CATCTCCTAAACATATCCTA+AGG + chr5.3:7103767-7103786 MS.gene21497:intron 35.0%
CCCTATCAGAACAAAATGAA+AGG - chr5.3:7103304-7103323 None:intergenic 35.0%
CCGCGATTTCAAATCTTATA+TGG - chr5.3:7101901-7101920 None:intergenic 35.0%
CCTAAACATATCCTAAGGAA+AGG + chr5.3:7103772-7103791 MS.gene21497:intron 35.0%
CCTTTCCTTAGGATATGTTT+AGG - chr5.3:7103775-7103794 None:intergenic 35.0%
CTCCATCCAAACATATTCTA+AGG - chr5.3:7103629-7103648 None:intergenic 35.0%
CTCTCCATGATAGGTTAAAA+AGG - chr5.3:7102736-7102755 None:intergenic 35.0%
CTTAGAATATGTTTGGATGG+AGG + chr5.3:7103627-7103646 MS.gene21497:intron 35.0%
CTTAGGATATGTTTAGGAGA+TGG - chr5.3:7103769-7103788 None:intergenic 35.0%
GACGTCATTATTGTTCTTGT+TGG + chr5.3:7104047-7104066 MS.gene21497:CDS 35.0%
GATGTTGCAAGTAAGTTGTT+TGG + chr5.3:7103401-7103420 MS.gene21497:intron 35.0%
GGAGACCATACTAAGAAATT+AGG + chr5.3:7104652-7104671 MS.gene21497:intron 35.0%
GGAGATTGAATGCTAAATCA+AGG - chr5.3:7101998-7102017 None:intergenic 35.0%
GGTTAATTAGGTTCTTATGC+AGG - chr5.3:7104193-7104212 None:intergenic 35.0%
GTTTAAGCTGTAACCAAGAA+TGG - chr5.3:7104607-7104626 None:intergenic 35.0%
TAAATTCGACAACACCTATC+AGG + chr5.3:7101706-7101725 MS.gene21497:CDS 35.0%
TCTGATAAACCTGTTCTTGT+TGG + chr5.3:7103958-7103977 MS.gene21497:intron 35.0%
TGTGGCAATTCAGTTTGAAT+TGG + chr5.3:7102492-7102511 MS.gene21497:intron 35.0%
TGTTGCAAGTAAGTTGTTTG+GGG + chr5.3:7103403-7103422 MS.gene21497:intron 35.0%
TTAACTAATCCCACTTGGTT+TGG + chr5.3:7103045-7103064 MS.gene21497:intron 35.0%
TTCTGCAAAACAAGAAGACT+TGG + chr5.3:7105475-7105494 MS.gene21497:CDS 35.0%
TTGAATCGAATCGTACCTTT+GGG + chr5.3:7102338-7102357 MS.gene21497:intron 35.0%
TTGTATTTAGGAAAGTCTGC+CGG - chr5.3:7103989-7104008 None:intergenic 35.0%
! AGCAGCAATTTTCCGAAAAA+GGG - chr5.3:7105429-7105448 None:intergenic 35.0%
! AGCTCCTTTTTAACCTATCA+TGG + chr5.3:7102729-7102748 MS.gene21497:intron 35.0%
! ATCATGGATTGAGACTGAAT+TGG - chr5.3:7105312-7105331 None:intergenic 35.0%
! CTAAATTAGCCTACCCAAAT+TGG - chr5.3:7103146-7103165 None:intergenic 35.0%
! CTTTTCATACAGGCAACAAT+CGG + chr5.3:7102878-7102897 MS.gene21497:intron 35.0%
! GATGGAGAAAACATGCATTT+TGG - chr5.3:7104549-7104568 None:intergenic 35.0%
! TAAATTGTTGGGTTTGGAGT+TGG + chr5.3:7104433-7104452 MS.gene21497:intron 35.0%
! TTTTGAATCTTTGTGACCTC+TGG + chr5.3:7102235-7102254 MS.gene21497:intron 35.0%
! TTTTGGCATACAATCTCCAA+GGG - chr5.3:7102032-7102051 None:intergenic 35.0%
!! ATGGTTTGTTGTAGAGTAGA+GGG - chr5.3:7103845-7103864 None:intergenic 35.0%
!! ATTTTAGTGACATGAGCAGT+CGG - chr5.3:7102297-7102316 None:intergenic 35.0%
!! ATTTTGGCATACAATCTCCA+AGG - chr5.3:7102033-7102052 None:intergenic 35.0%
!! TACAACAAAGTGGATTGAAG+AGG + chr5.3:7104004-7104023 MS.gene21497:CDS 35.0%
AAAATTGCTGCTGCATTACC+TGG + chr5.3:7105437-7105456 MS.gene21497:CDS 40.0%
AACCTATCATGGAGAGCTTA+TGG + chr5.3:7102740-7102759 MS.gene21497:intron 40.0%
AAGGCAAGATTCTCTAGCAT+GGG + chr5.3:7104497-7104516 MS.gene21497:intron 40.0%
AATCCTGAATCCTGTCATAG+AGG + chr5.3:7104728-7104747 MS.gene21497:intron 40.0%
AATTGTGATCGGAATCGCTT+TGG + chr5.3:7104266-7104285 MS.gene21497:intron 40.0%
ACTGCAGATGTATGGAAAGA+GGG - chr5.3:7105076-7105095 None:intergenic 40.0%
AGAAAAACTAGCCAAACGAG+TGG - chr5.3:7104214-7104233 None:intergenic 40.0%
AGCCAAACGAGTGGTTAATT+AGG - chr5.3:7104205-7104224 None:intergenic 40.0%
AGTGATCGTGAATGGAGTTT+CGG - chr5.3:7103872-7103891 None:intergenic 40.0%
ATAGAAGGAGTGATCGTGAA+TGG - chr5.3:7103880-7103899 None:intergenic 40.0%
CATATGGAAAGAGGGAGAAA+AGG - chr5.3:7105113-7105132 None:intergenic 40.0%
CTATGACAGGATTCAGGATT+AGG - chr5.3:7104728-7104747 None:intergenic 40.0%
CTGCTCATGTCACTAAAATG+CGG + chr5.3:7102298-7102317 MS.gene21497:intron 40.0%
CTGTAACCAAGAATGGAAAC+AGG - chr5.3:7104600-7104619 None:intergenic 40.0%
CTTAGTATGGTCTCCAAGAT+AGG - chr5.3:7104647-7104666 None:intergenic 40.0%
GAAGATAGTGTTTCCATTCC+AGG - chr5.3:7105458-7105477 None:intergenic 40.0%
GAAGTACAAACTGGTGTTCT+TGG + chr5.3:7101634-7101653 MS.gene21497:CDS 40.0%
GAATCTTGCCTTGGTAGAAA+AGG - chr5.3:7104489-7104508 None:intergenic 40.0%
GAGAGATTACTGCAGATGTA+TGG - chr5.3:7105084-7105103 None:intergenic 40.0%
GCTCAACATTATGATCTCTG+CGG - chr5.3:7102447-7102466 None:intergenic 40.0%
GTCACTAAAATGCGGAGAAA+GGG + chr5.3:7102306-7102325 MS.gene21497:intron 40.0%
GTTGAATCGAATCGTACCTT+TGG + chr5.3:7102337-7102356 MS.gene21497:intron 40.0%
TAAAATGGTGCATTGCATGC+AGG + chr5.3:7104697-7104716 MS.gene21497:intron 40.0%
TAAACCTGTTCTTGTTGGAC+AGG + chr5.3:7103963-7103982 MS.gene21497:intron 40.0%
TACACTATGCAGTGTTTGCA+TGG + chr5.3:7102118-7102137 MS.gene21497:intron 40.0%
TACTGCAGATGTATGGAAAG+AGG - chr5.3:7105077-7105096 None:intergenic 40.0%
TAGAGGACAGTCTTGATCAT+CGG + chr5.3:7104745-7104764 MS.gene21497:intron 40.0%
TATGCAGTGTTTGCATGGTA+TGG + chr5.3:7102123-7102142 MS.gene21497:intron 40.0%
TCACATGTACTCCATTTAGC+CGG + chr5.3:7104572-7104591 MS.gene21497:intron 40.0%
TCACTAAAATGCGGAGAAAG+GGG + chr5.3:7102307-7102326 MS.gene21497:intron 40.0%
TCTAGATTGAAGAACACTGC+TGG - chr5.3:7105267-7105286 None:intergenic 40.0%
TGAATCGAATCGTACCTTTG+GGG + chr5.3:7102339-7102358 MS.gene21497:intron 40.0%
TGGAAACAGGATACTTGTTC+CGG - chr5.3:7102618-7102637 None:intergenic 40.0%
TGTCACTAAAATGCGGAGAA+AGG + chr5.3:7102305-7102324 MS.gene21497:intron 40.0%
TGTCAGATGTCAAGGGTAAT+TGG - chr5.3:7104365-7104384 None:intergenic 40.0%
! AATCTTTGTGACCTCTGGAA+CGG + chr5.3:7102240-7102259 MS.gene21497:intron 40.0%
! CAGCAGCAATTTTCCGAAAA+AGG - chr5.3:7105430-7105449 None:intergenic 40.0%
! CATCTTTACAGGCCCTTTTT+CGG + chr5.3:7105414-7105433 MS.gene21497:intron 40.0%
! TACAGGAGAAAAGAGTGCAA+TGG - chr5.3:7104336-7104355 None:intergenic 40.0%
! TTTGTTGTAGAGTAGAGGGT+TGG - chr5.3:7103841-7103860 None:intergenic 40.0%
!! CATGGTTTGTTGTAGAGTAG+AGG - chr5.3:7103846-7103865 None:intergenic 40.0%
!! GTCGGGCCGATTTTAAAAAT+CGG - chr5.3:7102583-7102602 None:intergenic 40.0%
!!! GATGATGCTGGTTTTACCAA+CGG - chr5.3:7101669-7101688 None:intergenic 40.0%
!!! TTGCACTTGCTGATTTTCCT+TGG + chr5.3:7104304-7104323 MS.gene21497:intron 40.0%
AAATCGGCCCAATGCAACAT+TGG - chr5.3:7102567-7102586 None:intergenic 45.0%
AATCGGCCCAATGCAACATT+GGG - chr5.3:7102566-7102585 None:intergenic 45.0%
ACCAACAAGCCAAACCAAGT+GGG - chr5.3:7103057-7103076 None:intergenic 45.0%
AGACAAGTCTCCATAGAGGA+CGG + chr5.3:7104959-7104978 MS.gene21497:intron 45.0%
AGAGTCCCCTTTATACAGTG+AGG + chr5.3:7102369-7102388 MS.gene21497:intron 45.0%
ATGTCACTGCAAATCGCATC+AGG - chr5.3:7101969-7101988 None:intergenic 45.0%
ATTCTGTGAGCTGTTGCAGT+AGG + chr5.3:7103592-7103611 MS.gene21497:intron 45.0%
ATTGAAACTAGCGCCAAAGC+TGG + chr5.3:7105016-7105035 MS.gene21497:CDS 45.0%
CAAGGCAAGATTCTCTAGCA+TGG + chr5.3:7104496-7104515 MS.gene21497:intron 45.0%
CACATGTACTCCATTTAGCC+GGG + chr5.3:7104573-7104592 MS.gene21497:intron 45.0%
CACTAAAATGCGGAGAAAGG+GGG + chr5.3:7102308-7102327 MS.gene21497:intron 45.0%
CATGCTAGAGAATCTTGCCT+TGG - chr5.3:7104498-7104517 None:intergenic 45.0%
CTCCATAAGCTCTCCATGAT+AGG - chr5.3:7102745-7102764 None:intergenic 45.0%
GAACTGTTCGACTACAGTTG+TGG + chr5.3:7102939-7102958 MS.gene21497:CDS 45.0%
GAGTGCAATGGAAAGAACCA+AGG - chr5.3:7104324-7104343 None:intergenic 45.0%
GATGAGTCTCTGATGTAGCT+TGG - chr5.3:7103362-7103381 None:intergenic 45.0%
GATTCTCTAGCATGGGATGT+AGG + chr5.3:7104504-7104523 MS.gene21497:intron 45.0%
TATGTTTGGATGGAGGGTCT+TGG + chr5.3:7103634-7103653 MS.gene21497:intron 45.0%
TCAAGACTGTCCTCTATGAC+AGG - chr5.3:7104741-7104760 None:intergenic 45.0%
TCTCCAAAGTGAATCACCCT+TGG + chr5.3:7102013-7102032 MS.gene21497:intron 45.0%
TCTCCAAGGGTGATTCACTT+TGG - chr5.3:7102019-7102038 None:intergenic 45.0%
TGTCCTCTATGACAGGATTC+AGG - chr5.3:7104734-7104753 None:intergenic 45.0%
TGTTCTGATAGGGATACAGC+TGG + chr5.3:7103311-7103330 MS.gene21497:intron 45.0%
! AGCTTTGGCGAAGTACAAAC+TGG + chr5.3:7101625-7101644 MS.gene21497:CDS 45.0%
! ATTCTCCCTGGTGCCAATTT+GGG + chr5.3:7103130-7103149 MS.gene21497:intron 45.0%
! TATGGCTAGTTGGCCTATCT+TGG + chr5.3:7104631-7104650 MS.gene21497:intron 45.0%
!! CGAGATTTTAGGAGCAACGT+GGG + chr5.3:7102466-7102485 MS.gene21497:intron 45.0%
!! TGAATGGAGTTTCGGTGTCA+TGG - chr5.3:7103864-7103883 None:intergenic 45.0%
!! TTGGTTTGGCTTGTTGGTGT+TGG + chr5.3:7103059-7103078 MS.gene21497:intron 45.0%
!!! TGCTGGTTTTACCAACGGAT+TGG - chr5.3:7101664-7101683 None:intergenic 45.0%
!!! TATTTTTCTATTTTAAATTA+AGG + chr5.3:7103677-7103696 MS.gene21497:intron 5.0%
ACAAGTCTCCATAGAGGACG+GGG + chr5.3:7104961-7104980 MS.gene21497:CDS 50.0%
ACTGTGCCTCTCAACGGTTA+TGG + chr5.3:7102419-7102438 MS.gene21497:intron 50.0%
AGAGGGAAAAAAGTGAGCCC+AGG - chr5.3:7105059-7105078 None:intergenic 50.0%
ATGCGGAGAAAGGGGGTTTA+TGG + chr5.3:7102315-7102334 MS.gene21497:intron 50.0%
CACCAACAAGCCAAACCAAG+TGG - chr5.3:7103058-7103077 None:intergenic 50.0%
CCAAGAATGGAAACAGGACC+CGG - chr5.3:7104594-7104613 None:intergenic 50.0%
CGCCTCCTCACTGTATAAAG+GGG - chr5.3:7102377-7102396 None:intergenic 50.0%
CTGCAGACAAGTCTCCATAG+AGG + chr5.3:7104955-7104974 MS.gene21497:intron 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr5.3:7103109-7103128 None:intergenic 50.0%
GACAAGTCTCCATAGAGGAC+GGG + chr5.3:7104960-7104979 MS.gene21497:intron 50.0%
GCGCCTCCTCACTGTATAAA+GGG - chr5.3:7102378-7102397 None:intergenic 50.0%
GGACTCTTCACAATCCCCAA+AGG - chr5.3:7102356-7102375 None:intergenic 50.0%
GGATGGCCCAATGTTGCATT+GGG + chr5.3:7102557-7102576 MS.gene21497:intron 50.0%
GTCCCCTTTATACAGTGAGG+AGG + chr5.3:7102372-7102391 MS.gene21497:intron 50.0%
TACTTCGCCAAAGCTGACAC+TGG - chr5.3:7101620-7101639 None:intergenic 50.0%
TGATAGGGATACAGCTGGAC+AGG + chr5.3:7103316-7103335 MS.gene21497:intron 50.0%
TGCGCCTCCTCACTGTATAA+AGG - chr5.3:7102379-7102398 None:intergenic 50.0%
TGCTGCTGCATTACCTGGAA+TGG + chr5.3:7105442-7105461 MS.gene21497:CDS 50.0%
TGGATGGCCCAATGTTGCAT+TGG + chr5.3:7102556-7102575 MS.gene21497:intron 50.0%
TTCTTGGGTGACCAATCCGT+TGG + chr5.3:7101650-7101669 MS.gene21497:CDS 50.0%
TTTGGATGGAGGGTCTTGGT+GGG + chr5.3:7103638-7103657 MS.gene21497:intron 50.0%
! AGGTTCGATTCGATTCTCCC+TGG + chr5.3:7103118-7103137 MS.gene21497:intron 50.0%
! CATGAAGCGAGTGATGATGC+TGG - chr5.3:7101681-7101700 None:intergenic 50.0%
! GATTCTCCCTGGTGCCAATT+TGG + chr5.3:7103129-7103148 MS.gene21497:intron 50.0%
! GCACAGTGTGCCACTAACAA+CGG - chr5.3:7102406-7102425 None:intergenic 50.0%
! TGAAGAGGTGCGAACAGAGA+GGG + chr5.3:7104019-7104038 MS.gene21497:CDS 50.0%
! TTGAAGAGGTGCGAACAGAG+AGG + chr5.3:7104018-7104037 MS.gene21497:CDS 50.0%
! TTTTGCTTCCCCGTCCTCTA+TGG - chr5.3:7104972-7104991 None:intergenic 50.0%
!! GCGAGATTTTAGGAGCAACG+TGG + chr5.3:7102465-7102484 MS.gene21497:intron 50.0%
!! TCCCACTTGGTTTGGCTTGT+TGG + chr5.3:7103053-7103072 MS.gene21497:intron 50.0%
!! TGGCTTGTTGGTGTTGGCTT+GGG + chr5.3:7103065-7103084 MS.gene21497:intron 50.0%
!! TTGGCTTGTTGGTGTTGGCT+TGG + chr5.3:7103064-7103083 MS.gene21497:intron 50.0%
AATCGGCCCGACCATTTGCT+CGG + chr5.3:7102591-7102610 MS.gene21497:intron 55.0%
ACTCTTTGTACACCCCCGTG+AGG - chr5.3:7102537-7102556 None:intergenic 55.0%
AGCCTACCCAAATTGGCACC+AGG - chr5.3:7103139-7103158 None:intergenic 55.0%
ATGAATGGCGTCCGATGTGG+TGG + chr5.3:7102212-7102231 MS.gene21497:intron 55.0%
CAGATGAATGGCGTCCGATG+TGG + chr5.3:7102209-7102228 MS.gene21497:intron 55.0%
CCGGGTCCTGTTTCCATTCT+TGG + chr5.3:7104591-7104610 MS.gene21497:intron 55.0%
CCTGATTGTTGCGACCCTCA+CGG + chr5.3:7102519-7102538 MS.gene21497:intron 55.0%
CCTGTTCTTGTTGGACAGGC+CGG + chr5.3:7103967-7103986 MS.gene21497:intron 55.0%
CGGACGCCATTCATCTGATC+AGG - chr5.3:7102206-7102225 None:intergenic 55.0%
CGTGAGGGTCGCAACAATCA+GGG - chr5.3:7102521-7102540 None:intergenic 55.0%
CTCTTTGTACACCCCCGTGA+GGG - chr5.3:7102536-7102555 None:intergenic 55.0%
CTGATTGTTGCGACCCTCAC+GGG + chr5.3:7102520-7102539 MS.gene21497:intron 55.0%
CTTGTTCCGGACCGAGCAAA+TGG - chr5.3:7102605-7102624 None:intergenic 55.0%
GCCTACCCAAATTGGCACCA+GGG - chr5.3:7103138-7103157 None:intergenic 55.0%
GCGGATCCATAACCGTTGAG+AGG - chr5.3:7102428-7102447 None:intergenic 55.0%
GGAAACAGGACCCGGCTAAA+TGG - chr5.3:7104586-7104605 None:intergenic 55.0%
GTTTGGATGGAGGGTCTTGG+TGG + chr5.3:7103637-7103656 MS.gene21497:intron 55.0%
TAGGAGCAACGTGGGTGATG+TGG + chr5.3:7102474-7102493 MS.gene21497:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr5.3:7103106-7103125 None:intergenic 55.0%
TGATTGTTGCGACCCTCACG+GGG + chr5.3:7102521-7102540 MS.gene21497:intron 55.0%
TGGCACACTGTGCCTCTCAA+CGG + chr5.3:7102413-7102432 MS.gene21497:intron 55.0%
TTCCGGACCGAGCAAATGGT+CGG - chr5.3:7102601-7102620 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr5.3:7103091-7103110 MS.gene21497:intron 55.0%
TTGGATGGAGGGTCTTGGTG+GGG + chr5.3:7103639-7103658 MS.gene21497:intron 55.0%
! GAAGAGGTGCGAACAGAGAG+GGG + chr5.3:7104020-7104039 MS.gene21497:CDS 55.0%
! GGGGGTGTACAAAGAGTGGA+TGG + chr5.3:7102540-7102559 MS.gene21497:intron 55.0%
! TCACGGGGGTGTACAAAGAG+TGG + chr5.3:7102536-7102555 MS.gene21497:intron 55.0%
! TCCCTGGTGCCAATTTGGGT+AGG + chr5.3:7103134-7103153 MS.gene21497:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr5.3:7103092-7103111 None:intergenic 55.0%
!! CTTTGTGACCTCTGGAACGG+CGG + chr5.3:7102243-7102262 MS.gene21497:intron 55.0%
!! TTGGTGTTGGCTTGGGACCT+TGG + chr5.3:7103072-7103091 MS.gene21497:intron 55.0%
!! TTTGTGACCTCTGGAACGGC+GGG + chr5.3:7102244-7102263 MS.gene21497:intron 55.0%
CCGGCCTGTCCAACAAGAAC+AGG - chr5.3:7103970-7103989 None:intergenic 60.0%
CCGTGAGGGTCGCAACAATC+AGG - chr5.3:7102522-7102541 None:intergenic 60.0%
GATTGTTGCGACCCTCACGG+GGG + chr5.3:7102522-7102541 MS.gene21497:intron 60.0%
GGCGCAAGAGCCGTTGTTAG+TGG + chr5.3:7102393-7102412 MS.gene21497:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr5.3:7103098-7103117 MS.gene21497:intron 60.0%
TCCGGACCGAGCAAATGGTC+GGG - chr5.3:7102600-7102619 None:intergenic 60.0%
TCTTGGTGGGGAGAGGAGGA+AGG + chr5.3:7103651-7103670 MS.gene21497:intron 60.0%
! TCGGAGTGTCTGCACTCTGC+AGG - chr5.3:7102278-7102297 None:intergenic 60.0%
!! TTGTGACCTCTGGAACGGCG+GGG + chr5.3:7102245-7102264 MS.gene21497:intron 60.0%
AGGGTCTTGGTGGGGAGAGG+AGG + chr5.3:7103647-7103666 MS.gene21497:intron 65.0%
GCCCGACCATTTGCTCGGTC+CGG + chr5.3:7102596-7102615 MS.gene21497:intron 65.0%
TGGAGGGTCTTGGTGGGGAG+AGG + chr5.3:7103644-7103663 MS.gene21497:intron 65.0%
!! TGTGACCTCTGGAACGGCGG+GGG + chr5.3:7102246-7102265 MS.gene21497:intron 65.0%
ACACACCCCCGCCGTTCCAG+AGG - chr5.3:7102254-7102273 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 7101611 7105568 7101611 ID=MS.gene21497
chr5.3 mRNA 7101611 7105568 7101611 ID=MS.gene21497.t1;Parent=MS.gene21497
chr5.3 exon 7101611 7101727 7101611 ID=MS.gene21497.t1.exon1;Parent=MS.gene21497.t1
chr5.3 CDS 7101611 7101727 7101611 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
chr5.3 exon 7102890 7102960 7102890 ID=MS.gene21497.t1.exon2;Parent=MS.gene21497.t1
chr5.3 CDS 7102890 7102960 7102890 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
chr5.3 exon 7103322 7103410 7103322 ID=MS.gene21497.t1.exon3;Parent=MS.gene21497.t1
chr5.3 CDS 7103322 7103410 7103322 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
chr5.3 exon 7103985 7104096 7103985 ID=MS.gene21497.t1.exon4;Parent=MS.gene21497.t1
chr5.3 CDS 7103985 7104096 7103985 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
chr5.3 exon 7104961 7105051 7104961 ID=MS.gene21497.t1.exon5;Parent=MS.gene21497.t1
chr5.3 CDS 7104961 7105051 7104961 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
chr5.3 exon 7105425 7105568 7105425 ID=MS.gene21497.t1.exon6;Parent=MS.gene21497.t1
chr5.3 CDS 7105425 7105568 7105425 ID=cds.MS.gene21497.t1;Parent=MS.gene21497.t1
Gene Sequence

>MS.gene21497

ATGGCGCCAGTGTCAGCTTTGGCGAAGTACAAACTGGTGTTCTTGGGTGACCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGTATCTTCAATATTCATTCATTCATTGCTCAATTTGATTTGATTTTATTGGATTCACTTGCGTCCCTCTTTTTGAATAACATTTTCCTTTCATTATAGTATTCATAATGTTGGATTTGACTCTACTTGACCAAACTCTGTTTTATATCTTTTATTCTCTTATAATTTGATCCATATAAGATTTGAAATCGCGGTCGTGTTATGATCCTGAAAAATGCACAATTTTACTGTTAAATACGCCTGATGCGATTTGCAGTGACATCAAATACCTTGATTTAGCATTCAATCTCCAAAGTGAATCACCCTTGGAGATTGTATGCCAAAATCTATTTCACTGAGTTGTTGTTTTCTGCACAAATTCGTTTTGGATTTTTTTTTTTAGTATTATGTGTACACTATGCAGTGTTTGCATGGTATGGTTGTAATAATCCAGTTTAATAAGTTCAGATTCGAATTACTTTTTAGTATTGATCTAACCTGATCAGATGAATGGCGTCCGATGTGGTGGTTTTGAATCTTTGTGACCTCTGGAACGGCGGGGGTGTGTACCTGCAGAGTGCAGACACTCCGACTGCTCATGTCACTAAAATGCGGAGAAAGGGGGTTTATGGTTGAATCGAATCGTACCTTTGGGGATTGTGAAGAGTCCCCTTTATACAGTGAGGAGGCGCAAGAGCCGTTGTTAGTGGCACACTGTGCCTCTCAACGGTTATGGATCCGCAGAGATCATAATGTTGAGCGAGATTTTAGGAGCAACGTGGGTGATGTGGCAATTCAGTTTGAATTGGTCTCCCTGATTGTTGCGACCCTCACGGGGGTGTACAAAGAGTGGATGGCCCAATGTTGCATTGGGCCGATTTTTAAAATCGGCCCGACCATTTGCTCGGTCCGGAACAAGTATCCTGTTTCCATAAACAACTTAATTAAGCACTTATCATATAAATACTTAAGTCTAACAAAAGTTAAAATCAAGTCAAACTGTTTTCATGTAAGTTATAAATAAGCTCCTTTTTAACCTATCATGGAGAGCTTATGGAGATAAACTAAAAATAGCTCATGGAAATGTTATAACCTGTTTCATAAGTTATTCTTAGCAAACATACAAATGCCTATATCAGTAGATAAGCTCCTTAACTTATTATGATTTTATTCTTTTCATACAGGCAACAATCGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTACAGTTGTGGTAAGAATTAATATACTAGATCAACATCTCGTACTATAAACATGATAGCAAAATATTCCTCAGTATACTGAAGTTAACAAGTGTTTAACTAATCCCACTTGGTTTGGCTTGTTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCCTCAAGGTCTCAGGTTCGATTCGATTCTCCCTGGTGCCAATTTGGGTAGGCTAATTTAGCTTCTTCAAAAAAAGTGTTTATCTAATAAACATTTAGTTTCTACATCAGTACTTATATTTTTGGCGCTGAAGTTTATTTTTTTAATATTTTTATTTTTTTACTTTGTTTTTGGATTCTGGTTTTGAACTGTTCATCCTTTCATTTTGTTCTGATAGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGAGACTCATCCGTAGCCGTTATTGTATATGATGTTGCAAGTAAGTTGTTTGGGGCTTGTTTTCCTTTCACCTAGAATTGTATTGTACTTACACACAATCTTTTTGGTTGGACACATCTTTTGCTTCTTAGCAGTTGTTAATCTGATCGAAGCTGCTAATTTAGCTTCTTATTGGTTTTTAACATTTTGATAGTAAACCTGCAAACTTAACATTATTTCAAATTCTGTGAGCTGTTGCAGTAGGATGCCATTATACCTTAGAATATGTTTGGATGGAGGGTCTTGGTGGGGAGAGGAGGAAGGACTTATTTTTCTATTTTAAATTAAGGAAGCTACAAAATGTTTCTAAGATGTTACTCCTTCATTTTTTTTGAATAGAATTAGCTCTGCAAAACCCATCTCCTAAACATATCCTAAGGAAAGGAGCATAATGATAAAGTGCATTAGCTCTTTAACTCTGTTTATAACCAACCCTCTACTCTACAACAAACCATGACACCGAAACTCCATTCACGATCACTCCTTCTATAGTGTGAATGAATGATGCATTGTCCTAATGTCTGTTAAAATCTTTGTTAATAACACTTTCTGATAAACCTGTTCTTGTTGGACAGGCCGGCAGACTTTCCTAAATACAACAAAGTGGATTGAAGAGGTGCGAACAGAGAGGGGCAGTGACGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTCGTTGAAAAGAGGTAATGTGCAATGAATGAAAATAATGATTTAAGCTAGAATTAAAATTAGGAACTATTGGTAAAGATAATTACAAATAGGAATTATTAACCATACCTGCATAAGAACCTAATTAACCACTCGTTTGGCTAGTTTTTCTGAAACCACAACTGTTTTTGCTGAGAATTATTAAATTGTGATCGGAATCGCTTTGGAAATTTTCAGACTGATTGCACTTGCTGATTTTCCTTGGTTCTTTCCATTGCACTCTTTTCTCCTGTATATTATCCAATTACCCTTGACATCTGACATATGAATAAGTACTTGCCACTGCACACATATAAGTTGTTCAAAATAAATAAATTGTTGGGTTTGGAGTTGGAAAACTACTTTGAATTGATAATTCTTATTTCCTTTTCTACCAAGGCAAGATTCTCTAGCATGGGATGTAGGCATGCTTACTACTTGACTGCCAAAATGCATGTTTTCTCCATCTTTTCACATGTACTCCATTTAGCCGGGTCCTGTTTCCATTCTTGGTTACAGCTTAAACTAGATATGGCTAGTTGGCCTATCTTGGAGACCATACTAAGAAATTAGGATGTTGCTTGATAGTTAAATTCTAAAATGGTGCATTGCATGCAGGTTGATCCTAATCCTGAATCCTGTCATAGAGGACAGTCTTGATCATCGGTGAAAAGCCTTAATCTAGTTTCATTTCATGTTTGAAAGAGTTATCAGTTTTTTTCTGTGCTAACTTGACCCTAAAGATGTTTTACATGCATAGTAACTGCTTGCTGTATATTTATGGAGATGTGTGCTATTGTTACTAACAATCTGAAACTAACTGTTCGGTTTTACTAAATTTTCTTTGTGCGAGTCTGCAGACAAGTCTCCATAGAGGACGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTTATTGAAACTAGCGCCAAAGCTGGATTTAATATTAAGGTAACCTGGGCTCACTTTTTTCCCTCTTTCCATACATCTGCAGTAATCTCTCTGTTTCCCTTTTCTCCCTCTTTCCATATGTATTCAGTAAATTATCTGTTTCCACCAGAATGAAGTGAATTATACAAAATTATGAGATTGGATTCTGTTTCTACTTATTTGGACCTCTTATTATCGACTCTCTACTTTTTATAGTTTTAGTGATTTTCACTCCAGCAGTGTTCTTCAATCTAGAAAATTCATTTTGCTTGCATTTGCCAATTCAGTCTCAATCCATGATCATTCTTCTGCATCATTTTTTTTTTCTTTTCTATCAGGGAGATAACTAATTCAATCTTATTTAGTTCTAATACTTTTTTGGACATCTTTACAGGCCCTTTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACTTGGTTGATGTAAACTTAAAGTCTTCATCTGGGAATGCTCAATCTCAAACTCAATCAAGTGGATGTTCTTGTTGA
Protein sequence

>MS.gene21497.t1

MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDLVDVNLKSSSGNAQSQTQSSGCSC