AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09683.t1 MTR_5g013900 100.000 207 0 0 1 207 1 207 1.49e-153 424
MS.gene09683.t1 MTR_4g098950 91.304 207 17 1 1 207 1 206 1.43e-140 391
MS.gene09683.t1 MTR_8g090215 84.058 207 33 0 1 207 1 207 1.28e-130 365
MS.gene09683.t1 MTR_3g087160 84.058 207 32 1 1 207 1 206 5.28e-129 362
MS.gene09683.t1 MTR_1g094220 47.561 164 85 1 9 171 31 194 1.12e-50 163
MS.gene09683.t1 MTR_1g094220 47.170 159 83 1 9 166 31 189 2.93e-48 157
MS.gene09683.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 2.37e-47 154
MS.gene09683.t1 MTR_1g094220 47.436 156 81 1 9 163 31 186 3.63e-47 155
MS.gene09683.t1 MTR_8g031680 44.099 161 90 0 10 170 7 167 5.03e-47 154
MS.gene09683.t1 MTR_3g064390 40.341 176 105 0 11 186 12 187 1.06e-46 152
MS.gene09683.t1 MTR_5g076590 39.773 176 106 0 11 186 12 187 1.81e-46 152
MS.gene09683.t1 MTR_8g103550 43.750 160 90 0 11 170 11 170 1.46e-45 150
MS.gene09683.t1 MTR_2g102060 41.618 173 97 1 3 171 4 176 2.69e-45 149
MS.gene09683.t1 MTR_8g031870 44.304 158 88 0 10 167 7 164 5.46e-45 148
MS.gene09683.t1 MTR_4g064897 36.893 206 117 2 10 206 13 214 7.79e-45 148
MS.gene09683.t1 MTR_2g005500 43.478 161 91 0 10 170 10 170 1.78e-44 147
MS.gene09683.t1 MTR_3g069510 35.922 206 120 2 10 206 13 215 8.21e-44 146
MS.gene09683.t1 MTR_0262s0050 41.401 157 92 0 10 166 16 172 1.71e-43 145
MS.gene09683.t1 MTR_8g031660 42.857 161 92 0 10 170 7 167 1.89e-43 145
MS.gene09683.t1 MTR_8g089985 40.909 154 91 0 10 163 18 171 5.07e-43 144
MS.gene09683.t1 MTR_2g005510 41.290 155 91 0 10 164 16 170 6.58e-43 144
MS.gene09683.t1 MTR_3g086980 39.610 154 93 0 10 163 17 170 1.86e-42 142
MS.gene09683.t1 MTR_6g021790 35.354 198 119 3 10 204 7 198 1.91e-42 142
MS.gene09683.t1 MTR_4g012940 39.216 204 111 3 11 207 10 207 2.55e-42 142
MS.gene09683.t1 MTR_1g052475 40.127 157 94 0 10 166 16 172 2.79e-42 142
MS.gene09683.t1 MTR_7g051940 42.208 154 89 0 10 163 14 167 2.86e-42 142
MS.gene09683.t1 MTR_2g027660 36.264 182 110 1 10 191 7 182 3.86e-42 141
MS.gene09683.t1 MTR_8g027220 34.951 206 126 1 10 207 27 232 4.78e-42 142
MS.gene09683.t1 MTR_8g006970 37.563 197 117 2 10 205 23 214 5.48e-42 141
MS.gene09683.t1 MTR_4g079350 34.715 193 108 1 10 184 14 206 8.63e-42 140
MS.gene09683.t1 MTR_4g088090 33.679 193 110 1 10 184 14 206 8.82e-42 140
MS.gene09683.t1 MTR_8g036220 33.000 200 130 1 10 205 17 216 1.57e-41 140
MS.gene09683.t1 MTR_7g081700 40.373 161 96 0 10 170 9 169 3.06e-41 139
MS.gene09683.t1 MTR_4g069850 38.756 209 104 6 11 207 10 206 5.51e-41 138
MS.gene09683.t1 MTR_8g031830 41.830 153 89 0 10 162 7 159 8.50e-41 137
MS.gene09683.t1 MTR_2g014990 38.854 157 96 0 10 166 14 170 9.00e-41 138
MS.gene09683.t1 MTR_8g006970 40.373 161 96 0 10 170 9 169 1.09e-40 137
MS.gene09683.t1 MTR_1g078200 39.490 157 95 0 10 166 15 171 1.24e-40 138
MS.gene09683.t1 MTR_2g075950 37.580 157 98 0 10 166 14 170 1.49e-40 137
MS.gene09683.t1 MTR_7g405790 39.490 157 95 0 10 166 16 172 3.68e-40 137
MS.gene09683.t1 MTR_2g101890 37.745 204 114 3 11 207 12 209 3.76e-40 136
MS.gene09683.t1 MTR_6g079550 40.909 154 91 0 10 163 13 166 1.65e-39 135
MS.gene09683.t1 MTR_2g083860 36.943 157 99 0 10 166 14 170 1.86e-39 135
MS.gene09683.t1 MTR_1g115325 36.869 198 121 3 11 205 17 213 2.22e-39 134
MS.gene09683.t1 MTR_1g068740 37.143 210 125 4 3 205 5 214 3.02e-39 134
MS.gene09683.t1 MTR_1g068730 37.143 210 125 4 3 205 5 214 5.46e-39 133
MS.gene09683.t1 MTR_2g090865 34.694 196 109 2 10 187 12 206 3.70e-38 131
MS.gene09683.t1 MTR_7g100020 41.139 158 92 1 11 167 17 174 3.65e-37 129
MS.gene09683.t1 MTR_2g096550 36.634 202 115 5 11 205 17 212 3.75e-37 129
MS.gene09683.t1 MTR_8g092020 36.538 208 109 6 11 207 14 209 5.53e-37 128
MS.gene09683.t1 MTR_4g063160 36.683 199 122 3 11 205 17 215 5.86e-37 128
MS.gene09683.t1 MTR_3g064390 43.200 125 71 0 11 135 12 136 1.47e-36 125
MS.gene09683.t1 MTR_8g093740 36.869 198 119 4 10 205 14 207 8.12e-36 125
MS.gene09683.t1 MTR_1g097420 33.333 204 123 4 11 207 10 207 7.75e-35 122
MS.gene09683.t1 MTR_4g099470 36.207 174 106 1 32 205 7 175 9.29e-35 121
MS.gene09683.t1 MTR_7g117910 40.476 126 75 0 10 135 21 146 9.95e-35 122
MS.gene09683.t1 MTR_3g096350 35.922 206 110 5 10 205 13 206 5.14e-34 120
MS.gene09683.t1 MTR_1g062760 39.375 160 94 3 10 167 15 173 5.74e-33 118
MS.gene09683.t1 MTR_7g103070 36.875 160 99 2 10 167 17 176 1.87e-32 117
MS.gene09683.t1 MTR_1g090717 40.000 160 93 3 10 166 16 175 1.92e-32 116
MS.gene09683.t1 MTR_8g107070 37.662 154 96 0 10 163 15 168 2.79e-32 117
MS.gene09683.t1 MTR_1g029450 34.673 199 126 4 10 206 18 214 8.33e-32 115
MS.gene09683.t1 MTR_1g097420 31.707 205 125 5 10 207 38 234 3.26e-31 114
MS.gene09683.t1 MTR_1g068730 37.956 137 81 1 2 134 4 140 3.13e-29 107
MS.gene09683.t1 MTR_1g068740 38.519 135 79 1 2 132 4 138 4.70e-29 107
MS.gene09683.t1 MTR_8g093740 34.911 169 105 3 40 206 10 175 3.79e-26 99.4
MS.gene09683.t1 MTR_3g107707 31.977 172 106 3 10 177 14 178 4.20e-26 100
MS.gene09683.t1 MTR_3g107717 31.977 172 106 3 10 177 14 178 4.38e-26 100
MS.gene09683.t1 MTR_3g107713 33.333 168 109 3 10 177 14 178 4.72e-26 100
MS.gene09683.t1 MTR_6g039490 29.412 204 129 4 11 207 10 205 1.64e-25 99.4
MS.gene09683.t1 MTR_3g096350 40.945 127 70 4 10 132 13 138 2.03e-25 96.7
MS.gene09683.t1 MTR_3g096350 42.063 126 70 3 10 133 13 137 8.54e-25 95.5
MS.gene09683.t1 MTR_7g103070 40.351 114 66 2 56 167 7 120 7.55e-23 90.5
MS.gene09683.t1 MTR_2g090875 35.758 165 92 5 11 163 8 170 4.17e-22 89.4
MS.gene09683.t1 MTR_3g078260 35.758 165 92 5 11 163 10 172 7.21e-22 89.4
MS.gene09683.t1 MTR_4g088055 35.152 165 93 5 11 163 8 170 2.01e-21 87.8
MS.gene09683.t1 MTR_2g005500 31.056 161 71 1 10 170 10 130 7.34e-21 85.5
MS.gene09683.t1 MTR_8g075240 32.727 165 97 5 11 163 8 170 3.08e-20 84.7
MS.gene09683.t1 MTR_6g087980 33.939 165 95 5 11 163 8 170 3.67e-20 84.7
MS.gene09683.t1 MTR_5g022600 32.727 165 97 5 11 163 8 170 3.68e-20 84.3
MS.gene09683.t1 MTR_4g113620 30.952 168 104 4 10 177 14 169 6.72e-20 84.0
MS.gene09683.t1 MTR_4g073250 32.121 165 98 5 11 163 8 170 4.12e-19 81.6
MS.gene09683.t1 MTR_1452s0010 46.154 78 42 0 29 106 1 78 5.20e-19 79.0
MS.gene09683.t1 MTR_5g092060 27.485 171 118 3 5 170 100 269 2.45e-16 75.9
MS.gene09683.t1 MTR_3g078260 38.596 114 67 3 11 123 10 121 2.99e-16 72.8
MS.gene09683.t1 MTR_1686s0010 39.744 78 47 0 29 106 1 78 6.28e-16 70.5
MS.gene09683.t1 MTR_4g047870 24.260 169 122 2 7 170 89 256 2.91e-12 64.3
MS.gene09683.t1 MTR_8g031810 26.733 101 60 1 10 110 7 93 5.22e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09683.t1 AT2G44610 92.788 208 14 1 1 207 1 208 6.55e-143 397
MS.gene09683.t1 AT5G10260 86.957 207 27 0 1 207 1 207 1.48e-133 373
MS.gene09683.t1 AT2G22290 83.092 207 35 0 1 207 1 207 2.09e-127 357
MS.gene09683.t1 AT4G39890 76.636 214 43 3 1 207 1 214 2.87e-114 325
MS.gene09683.t1 AT5G64990 76.733 202 40 2 10 207 8 206 1.58e-106 305
MS.gene09683.t1 AT5G64990 74.163 209 40 3 10 207 8 213 9.28e-104 298
MS.gene09683.t1 AT3G54840 47.561 164 85 1 9 171 33 196 2.48e-50 162
MS.gene09683.t1 AT3G54840 47.826 161 83 1 12 171 2 162 1.57e-49 159
MS.gene09683.t1 AT4G19640 42.857 161 92 0 11 171 12 172 3.90e-48 156
MS.gene09683.t1 AT3G54840 48.077 156 80 1 9 163 33 188 4.15e-48 156
MS.gene09683.t1 AT5G45130 42.857 161 92 0 11 171 12 172 4.68e-48 156
MS.gene09683.t1 AT5G45130 42.138 159 92 0 13 171 22 180 4.90e-46 151
MS.gene09683.t1 AT4G17170 34.928 209 117 2 10 205 7 209 4.84e-44 146
MS.gene09683.t1 AT1G09630 41.401 157 92 0 10 166 13 169 5.21e-44 146
MS.gene09683.t1 AT1G07410 41.401 157 92 0 10 166 13 169 8.76e-44 145
MS.gene09683.t1 AT3G11730 37.811 201 113 2 10 205 9 202 9.48e-44 145
MS.gene09683.t1 AT4G17160 39.506 162 98 0 9 170 6 167 1.58e-43 145
MS.gene09683.t1 AT5G65270 38.854 157 96 0 10 166 18 174 1.72e-43 145
MS.gene09683.t1 AT5G59150 40.373 161 96 0 10 170 13 173 2.27e-43 145
MS.gene09683.t1 AT3G12160 41.401 157 92 0 10 166 16 172 5.68e-43 144
MS.gene09683.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene09683.t1 AT3G46830 40.127 157 94 0 10 166 13 169 1.44e-42 143
MS.gene09683.t1 AT3G15060 37.853 177 107 1 10 186 14 187 2.08e-42 142
MS.gene09683.t1 AT4G39990 38.217 157 97 0 10 166 18 174 2.32e-42 142
MS.gene09683.t1 AT1G05810 37.624 202 122 2 10 207 13 214 2.65e-42 142
MS.gene09683.t1 AT5G60860 34.715 193 108 1 10 184 14 206 2.94e-42 142
MS.gene09683.t1 AT1G05810 37.931 203 120 3 10 207 59 260 6.39e-42 142
MS.gene09683.t1 AT1G02130 40.373 161 96 0 10 170 9 169 1.33e-41 140
MS.gene09683.t1 AT4G35860 34.848 198 120 3 10 204 7 198 1.58e-41 140
MS.gene09683.t1 AT2G43130 36.000 200 123 2 10 205 13 211 2.20e-41 139
MS.gene09683.t1 AT2G31680 40.127 157 94 0 10 166 13 169 2.42e-41 140
MS.gene09683.t1 AT5G47520 39.490 157 95 0 10 166 15 171 2.53e-41 140
MS.gene09683.t1 AT5G47200 36.735 196 119 1 10 205 9 199 2.67e-41 139
MS.gene09683.t1 AT4G17530 37.113 194 122 0 10 203 9 202 2.72e-41 139
MS.gene09683.t1 AT3G18820 38.278 209 105 5 11 207 10 206 6.79e-41 138
MS.gene09683.t1 AT3G07410 42.208 154 89 0 10 163 13 166 8.55e-41 138
MS.gene09683.t1 AT5G47960 39.610 154 93 0 10 163 16 169 9.45e-41 138
MS.gene09683.t1 AT1G28550 38.854 157 96 0 10 166 14 170 1.27e-40 138
MS.gene09683.t1 AT1G52280 38.235 204 112 3 11 207 10 206 4.04e-40 136
MS.gene09683.t1 AT1G16920 36.628 172 106 1 10 181 14 182 5.27e-40 136
MS.gene09683.t1 AT1G18200 40.909 154 91 0 10 163 14 167 5.85e-40 136
MS.gene09683.t1 AT4G18430 33.816 207 120 3 10 205 14 214 1.66e-39 135
MS.gene09683.t1 AT1G73640 38.961 154 94 0 10 163 14 167 1.12e-38 133
MS.gene09683.t1 AT2G33870 37.580 157 98 0 10 166 14 170 1.34e-38 132
MS.gene09683.t1 AT5G45750 35.669 157 101 0 10 166 14 170 2.94e-38 132
MS.gene09683.t1 AT1G06400 36.943 157 99 0 10 166 14 170 4.48e-38 131
MS.gene09683.t1 AT3G16100 37.745 204 113 3 11 207 10 206 4.87e-38 130
MS.gene09683.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene09683.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene09683.t1 AT3G53610 38.384 198 118 4 11 205 17 213 5.81e-38 131
MS.gene09683.t1 AT1G01200 40.764 157 91 2 10 164 29 185 8.98e-38 131
MS.gene09683.t1 AT5G59840 36.041 197 124 2 11 205 17 213 1.07e-37 130
MS.gene09683.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene09683.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene09683.t1 AT3G46060 35.533 197 125 2 11 205 17 213 1.78e-37 129
MS.gene09683.t1 AT4G19640 42.400 125 72 0 11 135 12 136 4.77e-37 126
MS.gene09683.t1 AT4G18800 35.032 157 102 0 10 166 14 170 5.64e-37 128
MS.gene09683.t1 AT5G03520 35.377 212 131 3 1 206 3 214 9.15e-37 128
MS.gene09683.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene09683.t1 AT5G03530 37.000 200 120 5 10 206 14 210 3.88e-36 126
MS.gene09683.t1 AT4G19640 42.400 125 72 0 11 135 12 136 5.55e-36 125
MS.gene09683.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene09683.t1 AT1G49300 36.364 209 109 6 11 207 10 206 6.57e-36 125
MS.gene09683.t1 AT3G09900 39.037 187 109 2 1 182 3 189 1.28e-35 125
MS.gene09683.t1 AT1G22740 37.321 209 104 8 11 207 10 203 2.38e-34 121
MS.gene09683.t1 AT5G39620 34.112 214 112 6 9 207 5 204 9.79e-34 120
MS.gene09683.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene09683.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene09683.t1 AT1G43890 39.623 159 93 3 10 166 14 171 3.46e-33 118
MS.gene09683.t1 AT2G21880 37.725 167 91 3 11 167 11 174 5.42e-33 118
MS.gene09683.t1 AT4G09720 33.333 204 122 5 11 207 10 206 6.01e-33 117
MS.gene09683.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene09683.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene09683.t1 AT3G09910 40.625 160 92 3 10 167 14 172 7.34e-33 117
MS.gene09683.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene09683.t1 AT3G09910 40.625 160 92 3 10 167 14 172 1.47e-32 116
MS.gene09683.t1 AT4G09720 32.536 209 122 5 11 207 10 211 1.52e-31 114
MS.gene09683.t1 AT4G35860 36.774 155 89 3 53 204 4 152 5.33e-31 111
MS.gene09683.t1 AT4G09720 31.628 215 122 5 11 207 10 217 8.40e-31 112
MS.gene09683.t1 AT5G59150 40.678 118 70 0 53 170 5 122 5.06e-29 106
MS.gene09683.t1 AT5G03520 34.545 165 106 2 44 206 40 204 4.88e-28 105
MS.gene09683.t1 AT5G20010 31.383 188 112 4 10 187 14 194 1.61e-26 101
MS.gene09683.t1 AT5G20020 31.977 172 106 3 10 177 14 178 2.53e-26 101
MS.gene09683.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene09683.t1 AT2G21880 35.526 152 85 3 26 167 1 149 5.09e-26 99.4
MS.gene09683.t1 AT5G55190 31.977 172 106 3 10 177 14 178 5.62e-26 100
MS.gene09683.t1 AT5G55080 30.994 171 115 3 7 177 11 178 8.06e-26 100
MS.gene09683.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene09683.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene09683.t1 AT4G09720 32.203 177 106 5 38 207 3 172 6.45e-24 93.6
MS.gene09683.t1 AT2G21880 33.533 167 90 4 11 167 11 166 1.63e-23 93.6
MS.gene09683.t1 AT2G44690 33.939 165 95 5 11 163 20 182 9.55e-23 91.7
MS.gene09683.t1 AT3G48040 36.364 165 91 5 11 163 10 172 9.32e-22 89.0
MS.gene09683.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene09683.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene09683.t1 AT4G35020 33.333 165 96 5 11 163 8 170 3.93e-21 87.0
MS.gene09683.t1 AT1G75840 33.939 165 95 5 11 163 8 170 1.09e-20 85.9
MS.gene09683.t1 AT1G20090 33.939 165 95 5 11 163 7 169 1.17e-20 85.9
MS.gene09683.t1 AT5G62880 36.364 165 91 6 11 163 10 172 1.80e-20 85.9
MS.gene09683.t1 AT3G51300 33.333 165 96 5 11 163 8 170 3.33e-20 84.7
MS.gene09683.t1 AT4G35950 33.333 165 96 5 11 163 8 170 6.39e-20 84.0
MS.gene09683.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene09683.t1 AT2G17800 33.333 165 96 5 11 163 8 170 6.95e-20 83.6
MS.gene09683.t1 AT3G48040 35.897 156 86 5 11 154 10 163 7.04e-19 80.5
MS.gene09683.t1 AT4G28950 32.515 163 98 5 11 163 8 168 9.34e-19 80.9
MS.gene09683.t1 AT5G45970 32.530 166 96 6 11 163 8 170 3.41e-18 79.3
MS.gene09683.t1 AT5G62880 38.525 122 72 3 11 131 10 129 6.38e-18 78.6
MS.gene09683.t1 AT5G46025 40.964 83 48 1 85 166 20 102 2.55e-15 69.7
MS.gene09683.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene09683.t1 AT4G35020 34.211 114 72 3 11 123 8 119 9.58e-15 68.9
MS.gene09683.t1 AT3G21700 26.163 172 120 3 5 170 102 272 3.83e-14 69.7
MS.gene09683.t1 AT5G54840 27.108 166 113 5 11 170 103 266 8.86e-14 68.9
MS.gene09683.t1 AT3G51290 32.624 141 81 5 35 163 633 771 1.26e-12 66.6
MS.gene09683.t1 AT3G21700 25.581 172 120 4 5 170 102 271 9.78e-12 63.2

Find 39 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATCCACTTTGTTGTATTT+AGG 0.172440 5.2:-5922538 None:intergenic
CAAAGCTGGATTTAATATTA+AGG 0.271646 5.2:+5923571 MS.gene09683:CDS
GAAGATAGTGTTTCCATTCC+AGG 0.313624 5.2:-5923997 None:intergenic
TACTTCGCCAAAGCTGATAC+TGG 0.339848 5.2:-5920104 None:intergenic
CTTAATATTAAATCCAGCTT+TGG 0.362326 5.2:-5923570 None:intergenic
GTAAACTTAAAGTCTTCATC+TGG 0.363108 5.2:+5924045 MS.gene09683:CDS
GAAGTACAAACTGGTGTTCT+TGG 0.394319 5.2:+5920121 MS.gene09683:CDS
TAAATTCGACAACACCTATC+AGG 0.414459 5.2:+5920193 MS.gene09683:CDS
AAAATTGCTGCTGCATTACC+TGG 0.441428 5.2:+5923979 MS.gene09683:CDS
ATGTCATTATTGTTCTTGTT+GGG 0.447960 5.2:+5922588 MS.gene09683:CDS
TGCTGCTGCATTACCTGGAA+TGG 0.467151 5.2:+5923984 MS.gene09683:CDS
AAGTACAAACTGGTGTTCTT+GGG 0.481954 5.2:+5920122 MS.gene09683:CDS
ATTGAAACTAGCGCCAAAGC+TGG 0.491491 5.2:+5923557 MS.gene09683:CDS
GATGTCATTATTGTTCTTGT+TGG 0.493852 5.2:+5922587 MS.gene09683:CDS
TTCTGCAAAACAAGAAGACT+TGG 0.495641 5.2:+5924017 MS.gene09683:CDS
TGATAGGGATACAGCTGGAC+AGG 0.496271 5.2:+5921857 MS.gene09683:intron
AGCTTTGGCGAAGTACAAAC+TGG 0.499226 5.2:+5920112 MS.gene09683:CDS
GAATATTGAAGATACCTGAT+AGG 0.509953 5.2:-5920207 None:intergenic
TGCAACATCATATACAATAA+CGG 0.512280 5.2:-5921928 None:intergenic
GACAAGTCTCCATAGAGGAC+GGG 0.512967 5.2:+5923501 MS.gene09683:intron
AATGGCGCCAGTATCAGCTT+TGG 0.514481 5.2:+5920097 None:intergenic
CAATCTCAAACTCAATCAAG+TGG 0.517260 5.2:+5924075 MS.gene09683:CDS
GATGAGTCTCTGATGTAGCT+TGG 0.526858 5.2:-5921900 None:intergenic
TGTTCTGATAGGGATACAGC+TGG 0.529034 5.2:+5921852 MS.gene09683:intron
AAACTGATCTCGTTGAAAAG+AGG 0.533179 5.2:+5922615 MS.gene09683:CDS
TTCTTGGGTGACCAATCCGT+TGG 0.534832 5.2:+5920137 MS.gene09683:CDS
CGAAGAGGTGCGAACAGAGA+GGG 0.541678 5.2:+5922559 MS.gene09683:CDS
ATCATATACAATAACGGCTA+CGG 0.543543 5.2:-5921922 None:intergenic
TAAACTTAAAGTCTTCATCT+GGG 0.572801 5.2:+5924046 MS.gene09683:CDS
TCGAAGAGGTGCGAACAGAG+AGG 0.588904 5.2:+5922558 MS.gene09683:CDS
GAAGAGGTGCGAACAGAGAG+GGG 0.600914 5.2:+5922560 MS.gene09683:CDS
TTGTATTTAGGAAAGTCTGC+CGG 0.610534 5.2:-5922526 None:intergenic
CTTTCCTAAATACAACAAAG+TGG 0.614415 5.2:+5922534 MS.gene09683:CDS
AGACAAGTCTCCATAGAGGA+CGG 0.619191 5.2:+5923500 MS.gene09683:intron
ACAAGTCTCCATAGAGGACG+GGG 0.622928 5.2:+5923502 MS.gene09683:CDS
GAACTGTTCGACTACAGTTG+TGG 0.643989 5.2:+5921475 MS.gene09683:CDS
CATGAAGCGAGTGATGATGC+TGG 0.674864 5.2:-5920165 None:intergenic
TACAACAAAGTGGATCGAAG+AGG 0.679515 5.2:+5922544 MS.gene09683:CDS
CTGCAGACAAGTCTCCATAG+AGG 0.688178 5.2:+5923496 MS.gene09683:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATCATAATAAGTTA+AGG - chr5.2:5921394-5921413 None:intergenic 10.0%
!! ATTATGAATACTATAATAAA+TGG - chr5.2:5920299-5920318 None:intergenic 10.0%
!! TTCAAAATAAATAAATTGTT+GGG + chr5.2:5922962-5922981 MS.gene09683:intron 10.0%
!!! TTATTTTTTTACTTTGTTTT+TGG + chr5.2:5921797-5921816 MS.gene09683:intron 10.0%
!! AATTCTATTCAAAAAAATGA+AGG - chr5.2:5922273-5922292 None:intergenic 15.0%
!! ATTATACAAAATTATGAGAT+TGG + chr5.2:5923712-5923731 MS.gene09683:intron 15.0%
!! GTTCAAAATAAATAAATTGT+TGG + chr5.2:5922961-5922980 MS.gene09683:intron 15.0%
!! TATTATAGTATTCATAATGT+TGG + chr5.2:5920301-5920320 MS.gene09683:intron 15.0%
!! TTTAAGCTAGAATTAAAATT+AGG + chr5.2:5922664-5922683 MS.gene09683:intron 15.0%
!!! ATTTAGTTCTAATACTTTTT+TGG + chr5.2:5923932-5923951 MS.gene09683:intron 15.0%
!!! TCAATTTGATTTGATTTTAT+TGG + chr5.2:5920239-5920258 MS.gene09683:intron 15.0%
!!! TTGATAGTTAAATTCTAAAA+TGG + chr5.2:5923223-5923242 MS.gene09683:intron 15.0%
!! AATAAATAAATTGTTGGGTT+TGG + chr5.2:5922967-5922986 MS.gene09683:intron 20.0%
!! ATTATACCTTAGAATATGTT+TGG + chr5.2:5922161-5922180 MS.gene09683:intron 20.0%
!! ATTTAATATTAAGGTAACCT+GGG + chr5.2:5923580-5923599 MS.gene09683:intron 20.0%
!! GAAAATGTTATTCAAAAAGA+GGG - chr5.2:5920277-5920296 None:intergenic 20.0%
!! GAATTAAAATTAGGAACTAT+TGG + chr5.2:5922673-5922692 MS.gene09683:intron 20.0%
!! GAGAATTATTAAATTGTGAT+CGG + chr5.2:5922795-5922814 MS.gene09683:intron 20.0%
!! GATAATTTACTGAATACATA+TGG - chr5.2:5923670-5923689 None:intergenic 20.0%
!! TCTTATAATTTGATCCATAT+AGG + chr5.2:5920412-5920431 MS.gene09683:intron 20.0%
!! TGGTAAAGATAATTACAAAT+AGG + chr5.2:5922693-5922712 MS.gene09683:intron 20.0%
!!! AAACATATTCTAAGGTATAA+TGG - chr5.2:5922162-5922181 None:intergenic 20.0%
!!! TACATCAGTACTTATATTTT+TGG + chr5.2:5921748-5921767 MS.gene09683:intron 20.0%
!!! TGATTTTATTCTTTTCATAC+AGG + chr5.2:5921404-5921423 MS.gene09683:intron 20.0%
!!! TTTTTTTTTCTGTTCTATCA+GGG + chr5.2:5923889-5923908 MS.gene09683:intron 20.0%
!!! TTTTTTTTTTCTGTTCTATC+AGG + chr5.2:5923888-5923907 MS.gene09683:intron 20.0%
! AACATCCTAATTTCTTAGTA+TGG - chr5.2:5923201-5923220 None:intergenic 25.0%
! ATGCATGTAAAACATCTTTA+GGG - chr5.2:5923380-5923399 None:intergenic 25.0%
! ATGTCATTATTGTTCTTGTT+GGG + chr5.2:5922588-5922607 MS.gene09683:CDS 25.0%
! CAAAGCTGGATTTAATATTA+AGG + chr5.2:5923571-5923590 MS.gene09683:CDS 25.0%
! CATGAAATGAAACTAGATTA+AGG - chr5.2:5923319-5923338 None:intergenic 25.0%
! CTAAGAATAACTTATGAAAC+AGG - chr5.2:5921337-5921356 None:intergenic 25.0%
! CTGCTAATTTATCTTCTTAT+TGG + chr5.2:5922064-5922083 MS.gene09683:intron 25.0%
! CTTAATATTAAATCCAGCTT+TGG - chr5.2:5923573-5923592 None:intergenic 25.0%
! GATAAACTAAAAATAGCTCA+TGG + chr5.2:5921300-5921319 MS.gene09683:intron 25.0%
! GATTTAATATTAAGGTAACC+TGG + chr5.2:5923579-5923598 MS.gene09683:intron 25.0%
! GGAAAATGTTATTCAAAAAG+AGG - chr5.2:5920278-5920297 None:intergenic 25.0%
! TAAACTTAAAGTCTTCATCT+GGG + chr5.2:5924046-5924065 MS.gene09683:CDS 25.0%
! TATGCATGTAAAACATCTTT+AGG - chr5.2:5923381-5923400 None:intergenic 25.0%
! TGAAATAATGTTAAGTTTGC+AGG - chr5.2:5922112-5922131 None:intergenic 25.0%
! TGCAACATCATATACAATAA+CGG - chr5.2:5921931-5921950 None:intergenic 25.0%
! TGTAAGTACAATACAATACT+AGG - chr5.2:5921985-5922004 None:intergenic 25.0%
! TTGTATAATTCACTTCATTC+TGG - chr5.2:5923701-5923720 None:intergenic 25.0%
!! AGTAAAATTGTGCATTTTTC+AGG - chr5.2:5920464-5920483 None:intergenic 25.0%
!! ATTAAGTTGTTTATGGAAAC+AGG - chr5.2:5921167-5921186 None:intergenic 25.0%
!! GTGCTTAATTAAGTTGTTTA+TGG - chr5.2:5921174-5921193 None:intergenic 25.0%
!!! CAAAGATTTTAACAGACATT+AGG - chr5.2:5922466-5922485 None:intergenic 25.0%
!!! TTTACTTTGTTTTTGGATTC+TGG + chr5.2:5921804-5921823 MS.gene09683:intron 25.0%
ACAATACAATACTAGGTGAA+AGG - chr5.2:5921978-5921997 None:intergenic 30.0%
ACTGAATACATATGGAAAGA+GGG - chr5.2:5923662-5923681 None:intergenic 30.0%
AGGGTAATTGGATAATATAC+AGG - chr5.2:5922893-5922912 None:intergenic 30.0%
ATCATATACAATAACGGCTA+CGG - chr5.2:5921925-5921944 None:intergenic 30.0%
ATGTTGCAAGTAAGTTGTTT+GGG + chr5.2:5921943-5921962 MS.gene09683:intron 30.0%
ATTCATATGTCAGATGTCAA+GGG - chr5.2:5922912-5922931 None:intergenic 30.0%
CGAATCTGAACTTATTAAAC+TGG - chr5.2:5920695-5920714 None:intergenic 30.0%
CTTTCCTAAATACAACAAAG+TGG + chr5.2:5922534-5922553 MS.gene09683:CDS 30.0%
GAATATTGAAGATACCTGAT+AGG - chr5.2:5920210-5920229 None:intergenic 30.0%
GATGTCATTATTGTTCTTGT+TGG + chr5.2:5922587-5922606 MS.gene09683:CDS 30.0%
GTAAACTTAAAGTCTTCATC+TGG + chr5.2:5924045-5924064 MS.gene09683:CDS 30.0%
GTTACAGCTTAAACTAGATA+TGG + chr5.2:5923154-5923173 MS.gene09683:intron 30.0%
TACCTTAGAATATGTTTGGA+TGG + chr5.2:5922165-5922184 MS.gene09683:intron 30.0%
TACTGAATACATATGGAAAG+AGG - chr5.2:5923663-5923682 None:intergenic 30.0%
TATAATTCACTTCATTCTGG+TGG - chr5.2:5923698-5923717 None:intergenic 30.0%
TATTCATATGTCAGATGTCA+AGG - chr5.2:5922913-5922932 None:intergenic 30.0%
TCATTCATTCACACTATAGA+AGG - chr5.2:5922435-5922454 None:intergenic 30.0%
TTAAACTAGATATGGCTAGT+TGG + chr5.2:5923162-5923181 MS.gene09683:intron 30.0%
TTAGAATATGTTTGGATGGA+GGG + chr5.2:5922169-5922188 MS.gene09683:intron 30.0%
TTAGGATATGTTTAGGAGAT+GGG - chr5.2:5922308-5922327 None:intergenic 30.0%
! ACAATCTGAAACTAACTGTT+CGG + chr5.2:5923447-5923466 MS.gene09683:intron 30.0%
! ATGGAGAAAACATGCATTTT+TGG - chr5.2:5923089-5923108 None:intergenic 30.0%
! ATTGGGCCGATATTTAAAAT+TGG + chr5.2:5921110-5921129 MS.gene09683:intron 30.0%
! CAACTCAGTGAAATAGATTT+TGG - chr5.2:5920577-5920596 None:intergenic 30.0%
! CCTTTCATTTTGTTCTGATA+GGG + chr5.2:5921842-5921861 MS.gene09683:intron 30.0%
! GTACTTACACACAATCTTTT+TGG + chr5.2:5921996-5922015 MS.gene09683:intron 30.0%
! TCCTTTCATTTTGTTCTGAT+AGG + chr5.2:5921841-5921860 MS.gene09683:intron 30.0%
!! AACTGCTTGCTGTATATTTA+TGG + chr5.2:5923403-5923422 MS.gene09683:intron 30.0%
!! GGATTCTGTTTCTACTTATT+TGG + chr5.2:5923733-5923752 MS.gene09683:intron 30.0%
!! TCTTATTTCCTTTTCTACCA+AGG + chr5.2:5923018-5923037 MS.gene09683:intron 30.0%
!! TTACACACAATCTTTTTGGT+TGG + chr5.2:5922000-5922019 MS.gene09683:intron 30.0%
!! TTTGTTATTAAGTTCCAGTC+AGG - chr5.2:5920352-5920371 None:intergenic 30.0%
!!! ACTTTTTTGGACATCTTTAC+AGG + chr5.2:5923945-5923964 MS.gene09683:intron 30.0%
AAACTGATCTCGTTGAAAAG+AGG + chr5.2:5922615-5922634 MS.gene09683:CDS 35.0%
AACAACTTATATGTGTGCAG+TGG - chr5.2:5922944-5922963 None:intergenic 35.0%
AACCTAATTAACCACTCGTT+TGG + chr5.2:5922740-5922759 MS.gene09683:intron 35.0%
AAGATTCAAAACCACCACAT+CGG - chr5.2:5920762-5920781 None:intergenic 35.0%
AAGTACAAACTGGTGTTCTT+GGG + chr5.2:5920122-5920141 MS.gene09683:CDS 35.0%
AGTGTTTAACTAATCCCACT+TGG + chr5.2:5921581-5921600 MS.gene09683:intron 35.0%
ATATGGAAAGAGGGAGAAAA+GGG - chr5.2:5923653-5923672 None:intergenic 35.0%
ATCATTATGCTCCTTTCCTT+AGG - chr5.2:5922326-5922345 None:intergenic 35.0%
ATCTAACCTGATCAGATGAA+TGG + chr5.2:5920733-5920752 MS.gene09683:intron 35.0%
ATGATGCAGAAGAATGATCA+TGG - chr5.2:5923869-5923888 None:intergenic 35.0%
ATGGAGTACATGTGAAAAGA+TGG - chr5.2:5923108-5923127 None:intergenic 35.0%
ATTAGGTTCTTATGCAGGTA+TGG - chr5.2:5922728-5922747 None:intergenic 35.0%
ATTCTCAGCAAAAACAGTTG+TGG - chr5.2:5922781-5922800 None:intergenic 35.0%
ATTCTCCCTAATGCCAATTT+GGG + chr5.2:5921671-5921690 MS.gene09683:intron 35.0%
CAATCTCAAACTCAATCAAG+TGG + chr5.2:5924075-5924094 MS.gene09683:CDS 35.0%
CATCTCCTAAACATATCCTA+AGG + chr5.2:5922307-5922326 MS.gene09683:intron 35.0%
CCCTATCAGAACAAAATGAA+AGG - chr5.2:5921845-5921864 None:intergenic 35.0%
CCTAAACATATCCTAAGGAA+AGG + chr5.2:5922312-5922331 MS.gene09683:intron 35.0%
CCTTTCCTTAGGATATGTTT+AGG - chr5.2:5922315-5922334 None:intergenic 35.0%
CTCCATCCAAACATATTCTA+AGG - chr5.2:5922170-5922189 None:intergenic 35.0%
CTCTCCATGATAGGTTAAAA+AGG - chr5.2:5921272-5921291 None:intergenic 35.0%
CTTAGAATATGTTTGGATGG+AGG + chr5.2:5922168-5922187 MS.gene09683:intron 35.0%
CTTAGGATATGTTTAGGAGA+TGG - chr5.2:5922309-5922328 None:intergenic 35.0%
GATGTTGCAAGTAAGTTGTT+TGG + chr5.2:5921942-5921961 MS.gene09683:intron 35.0%
GGAGACCATACTAAGAAATT+AGG + chr5.2:5923193-5923212 MS.gene09683:intron 35.0%
GGAGATTGAATGCTAAATCA+AGG - chr5.2:5920526-5920545 None:intergenic 35.0%
GGTTAATTAGGTTCTTATGC+AGG - chr5.2:5922733-5922752 None:intergenic 35.0%
GTTTAAGCTGTAACCAAGAA+CGG - chr5.2:5923148-5923167 None:intergenic 35.0%
TAAATTCGACAACACCTATC+AGG + chr5.2:5920193-5920212 MS.gene09683:CDS 35.0%
TAGAAGACAGTCTTGATCAT+CGG + chr5.2:5923286-5923305 MS.gene09683:intron 35.0%
TCTGATAAACCTGTTCTTGT+TGG + chr5.2:5922498-5922517 MS.gene09683:intron 35.0%
TGTGGCAATTCAGTTTGAAT+TGG + chr5.2:5921028-5921047 MS.gene09683:intron 35.0%
TGTTGCAAGTAAGTTGTTTG+GGG + chr5.2:5921944-5921963 MS.gene09683:intron 35.0%
TTAACTAATCCCACTTGGTT+TGG + chr5.2:5921586-5921605 MS.gene09683:intron 35.0%
TTCTGCAAAACAAGAAGACT+TGG + chr5.2:5924017-5924036 MS.gene09683:CDS 35.0%
TTGAATCGAATCGTACCTTT+GGG + chr5.2:5920874-5920893 MS.gene09683:intron 35.0%
TTGTATTTAGGAAAGTCTGC+CGG - chr5.2:5922529-5922548 None:intergenic 35.0%
! ACACTTGTTAACTTCAGTAC+AGG - chr5.2:5921566-5921585 None:intergenic 35.0%
! AGCAGCAATTTTCCGAAAAA+GGG - chr5.2:5923971-5923990 None:intergenic 35.0%
! AGCTCCTTTTTAACCTATCA+TGG + chr5.2:5921265-5921284 MS.gene09683:intron 35.0%
! ATCATGGATTGAGACTGAAT+TGG - chr5.2:5923853-5923872 None:intergenic 35.0%
! CCATATAGGATTTGAAATCG+CGG + chr5.2:5920426-5920445 MS.gene09683:intron 35.0%
! CGATCCACTTTGTTGTATTT+AGG - chr5.2:5922541-5922560 None:intergenic 35.0%
! CTAAATTAGCCTACCCAAAT+TGG - chr5.2:5921687-5921706 None:intergenic 35.0%
! CTTTCTGCACAAATTCGTTT+TGG + chr5.2:5920600-5920619 MS.gene09683:intron 35.0%
! CTTTTCATACAGGCAACAAT+CGG + chr5.2:5921414-5921433 MS.gene09683:intron 35.0%
! GTAATGTTGAGCGAGATTTT+AGG + chr5.2:5920991-5921010 MS.gene09683:intron 35.0%
! GTCGGGCCAATTTTAAATAT+CGG - chr5.2:5921119-5921138 None:intergenic 35.0%
! TAAATTGTTGGGTTTGGAGT+TGG + chr5.2:5922973-5922992 MS.gene09683:intron 35.0%
! TTTTGAATCTTTGTGACCTC+TGG + chr5.2:5920771-5920790 MS.gene09683:intron 35.0%
! TTTTGGCATACAATCTCCAA+GGG - chr5.2:5920560-5920579 None:intergenic 35.0%
!! ATGGTTTGTTGTAGAGTAGA+GGG - chr5.2:5922385-5922404 None:intergenic 35.0%
!! ATTTTAGTGACATGAGCAGT+CGG - chr5.2:5920833-5920852 None:intergenic 35.0%
!! ATTTTGGCATACAATCTCCA+AGG - chr5.2:5920561-5920580 None:intergenic 35.0%
AAAATTGCTGCTGCATTACC+TGG + chr5.2:5923979-5923998 MS.gene09683:CDS 40.0%
AACCTATCATGGAGAGCTTA+TGG + chr5.2:5921276-5921295 MS.gene09683:intron 40.0%
AACTTCAGTACAGGATACTG+AGG - chr5.2:5921557-5921576 None:intergenic 40.0%
AAGGCAAGATTCTCTAGCAT+GGG + chr5.2:5923037-5923056 MS.gene09683:intron 40.0%
AATTGTGATCGGAATCGCTT+TGG + chr5.2:5922806-5922825 MS.gene09683:intron 40.0%
ACTGCAGATGTATGGAAAGA+GGG - chr5.2:5923617-5923636 None:intergenic 40.0%
AGAAAAACTAGCCAAACGAG+TGG - chr5.2:5922754-5922773 None:intergenic 40.0%
AGAGTCCCCTTTATATAGTG+AGG + chr5.2:5920905-5920924 MS.gene09683:intron 40.0%
AGCCAAACGAGTGGTTAATT+AGG - chr5.2:5922745-5922764 None:intergenic 40.0%
AGTGATCGTGAATGGAGTTT+CGG - chr5.2:5922412-5922431 None:intergenic 40.0%
ATAGAAGGAGTGATCGTGAA+TGG - chr5.2:5922420-5922439 None:intergenic 40.0%
ATGTCACTGCAAATCACATC+AGG - chr5.2:5920497-5920516 None:intergenic 40.0%
CATATGGAAAGAGGGAGAAA+AGG - chr5.2:5923654-5923673 None:intergenic 40.0%
CCGCGATTTCAAATCCTATA+TGG - chr5.2:5920429-5920448 None:intergenic 40.0%
CTATGACAGGATTCAGGATT+AGG - chr5.2:5923269-5923288 None:intergenic 40.0%
CTGCTCATGTCACTAAAATG+CGG + chr5.2:5920834-5920853 MS.gene09683:intron 40.0%
CTTAGTATGGTCTCCAAGAT+AGG - chr5.2:5923188-5923207 None:intergenic 40.0%
GAAGATAGTGTTTCCATTCC+AGG - chr5.2:5924000-5924019 None:intergenic 40.0%
GAAGTACAAACTGGTGTTCT+TGG + chr5.2:5920121-5920140 MS.gene09683:CDS 40.0%
GAATCTTGCCTTGGTAGAAA+AGG - chr5.2:5923029-5923048 None:intergenic 40.0%
GATTCTCCCTAATGCCAATT+TGG + chr5.2:5921670-5921689 MS.gene09683:intron 40.0%
GTCACTAAAATGCGGAGAAA+GGG + chr5.2:5920842-5920861 MS.gene09683:intron 40.0%
GTTGAATCGAATCGTACCTT+TGG + chr5.2:5920873-5920892 MS.gene09683:intron 40.0%
TAAAATGGTGCATTGCATGC+AGG + chr5.2:5923238-5923257 MS.gene09683:intron 40.0%
TAAACCTGTTCTTGTTGGAC+AGG + chr5.2:5922503-5922522 MS.gene09683:intron 40.0%
TACAACAAAGTGGATCGAAG+AGG + chr5.2:5922544-5922563 MS.gene09683:CDS 40.0%
TACACTATGCAGTGTTTGCA+TGG + chr5.2:5920654-5920673 MS.gene09683:intron 40.0%
TACTGCAGATGTATGGAAAG+AGG - chr5.2:5923618-5923637 None:intergenic 40.0%
TCAAGACTGTCTTCTATGAC+AGG - chr5.2:5923282-5923301 None:intergenic 40.0%
TCACATGTACTCCATTTAGC+CGG + chr5.2:5923113-5923132 MS.gene09683:intron 40.0%
TCACTAAAATGCGGAGAAAG+GGG + chr5.2:5920843-5920862 MS.gene09683:intron 40.0%
TCTAGATTGAAGAACACTGC+TGG - chr5.2:5923808-5923827 None:intergenic 40.0%
TGAATCGAATCGTACCTTTG+GGG + chr5.2:5920875-5920894 MS.gene09683:intron 40.0%
TGGAAACAGGATACTTGTTC+CGG - chr5.2:5921154-5921173 None:intergenic 40.0%
TGTCACTAAAATGCGGAGAA+AGG + chr5.2:5920841-5920860 MS.gene09683:intron 40.0%
TGTCAGATGTCAAGGGTAAT+TGG - chr5.2:5922905-5922924 None:intergenic 40.0%
TGTCTTCTATGACAGGATTC+AGG - chr5.2:5923275-5923294 None:intergenic 40.0%
! AATCTTTGTGACCTCTGGAA+CGG + chr5.2:5920776-5920795 MS.gene09683:intron 40.0%
! CAGCAGCAATTTTCCGAAAA+AGG - chr5.2:5923972-5923991 None:intergenic 40.0%
! CATCTTTACAGGCCCTTTTT+CGG + chr5.2:5923956-5923975 MS.gene09683:intron 40.0%
! TACAGGAGAAAAGAGTGCAA+TGG - chr5.2:5922876-5922895 None:intergenic 40.0%
! TTTGTTGTAGAGTAGAGGGT+TGG - chr5.2:5922381-5922400 None:intergenic 40.0%
!! CATGGTTTGTTGTAGAGTAG+AGG - chr5.2:5922386-5922405 None:intergenic 40.0%
!!! GATGATGCTGGTTTTACCAA+CGG - chr5.2:5920156-5920175 None:intergenic 40.0%
!!! TTGCACTTGCTGATTTTCCT+TGG + chr5.2:5922844-5922863 MS.gene09683:intron 40.0%
ACCAACAAGCCAAACCAAGT+GGG - chr5.2:5921598-5921617 None:intergenic 45.0%
AGACAAGTCTCCATAGAGGA+CGG + chr5.2:5923500-5923519 MS.gene09683:intron 45.0%
AGCCTACCCAAATTGGCATT+AGG - chr5.2:5921680-5921699 None:intergenic 45.0%
ATATCGGCCCAATGCAACAT+TGG - chr5.2:5921103-5921122 None:intergenic 45.0%
ATTCTGTGAGCTGTTGCAGT+AGG + chr5.2:5922133-5922152 MS.gene09683:intron 45.0%
ATTGAAACTAGCGCCAAAGC+TGG + chr5.2:5923557-5923576 MS.gene09683:CDS 45.0%
CAAGGCAAGATTCTCTAGCA+TGG + chr5.2:5923036-5923055 MS.gene09683:intron 45.0%
CACATGTACTCCATTTAGCC+GGG + chr5.2:5923114-5923133 MS.gene09683:intron 45.0%
CACTAAAATGCGGAGAAAGG+GGG + chr5.2:5920844-5920863 MS.gene09683:intron 45.0%
CATGCTAGAGAATCTTGCCT+TGG - chr5.2:5923038-5923057 None:intergenic 45.0%
CGCCTCCTCACTATATAAAG+GGG - chr5.2:5920913-5920932 None:intergenic 45.0%
CTCCATAAGCTCTCCATGAT+AGG - chr5.2:5921281-5921300 None:intergenic 45.0%
CTGTAACCAAGAACGGAAAC+AGG - chr5.2:5923141-5923160 None:intergenic 45.0%
GAACTGTTCGACTACAGTTG+TGG + chr5.2:5921475-5921494 MS.gene09683:CDS 45.0%
GAGCGATTACTGCAGATGTA+TGG - chr5.2:5923625-5923644 None:intergenic 45.0%
GAGTGCAATGGAAAGAACCA+AGG - chr5.2:5922864-5922883 None:intergenic 45.0%
GATGAGTCTCTGATGTAGCT+TGG - chr5.2:5921903-5921922 None:intergenic 45.0%
GATTCTCTAGCATGGGATGT+AGG + chr5.2:5923044-5923063 MS.gene09683:intron 45.0%
GCCTACCCAAATTGGCATTA+GGG - chr5.2:5921679-5921698 None:intergenic 45.0%
GCGCCTCCTCACTATATAAA+GGG - chr5.2:5920914-5920933 None:intergenic 45.0%
GCTCAACATTACGATCTCTG+CGG - chr5.2:5920983-5921002 None:intergenic 45.0%
GTCCCCTTTATATAGTGAGG+AGG + chr5.2:5920908-5920927 MS.gene09683:intron 45.0%
TACTTCGCCAAAGCTGATAC+TGG - chr5.2:5920107-5920126 None:intergenic 45.0%
TATCGGCCCAATGCAACATT+GGG - chr5.2:5921102-5921121 None:intergenic 45.0%
TATGTTTGGATGGAGGGTCT+TGG + chr5.2:5922175-5922194 MS.gene09683:intron 45.0%
TCCCTAATGCCAATTTGGGT+AGG + chr5.2:5921675-5921694 MS.gene09683:intron 45.0%
TCTCCAAAGTGAATCACCCT+TGG + chr5.2:5920541-5920560 MS.gene09683:intron 45.0%
TCTCCAAGGGTGATTCACTT+TGG - chr5.2:5920547-5920566 None:intergenic 45.0%
TGCGCCTCCTCACTATATAA+AGG - chr5.2:5920915-5920934 None:intergenic 45.0%
TGTTCTGATAGGGATACAGC+TGG + chr5.2:5921852-5921871 MS.gene09683:intron 45.0%
! AAGTTCCAGTCAGGCGTTTT+TGG - chr5.2:5920343-5920362 None:intergenic 45.0%
! AGCTTTGGCGAAGTACAAAC+TGG + chr5.2:5920112-5920131 MS.gene09683:CDS 45.0%
! TATGGCTAGTTGGCCTATCT+TGG + chr5.2:5923172-5923191 MS.gene09683:intron 45.0%
!! CGAGATTTTAGGAGCAACGT+GGG + chr5.2:5921002-5921021 MS.gene09683:intron 45.0%
!! TGAATGGAGTTTCGGTGTCA+TGG - chr5.2:5922404-5922423 None:intergenic 45.0%
!! TTGGTTTGGCTTGTTGGTGT+TGG + chr5.2:5921600-5921619 MS.gene09683:intron 45.0%
!!! TGCTGGTTTTACCAACGGAT+TGG - chr5.2:5920151-5920170 None:intergenic 45.0%
!!! TATTTTTCTATTTTAAATTA+AGG + chr5.2:5922218-5922237 MS.gene09683:intron 5.0%
ACAAGTCTCCATAGAGGACG+GGG + chr5.2:5923502-5923521 MS.gene09683:CDS 50.0%
ACTGTGCCTCTCAACGGTTA+TGG + chr5.2:5920955-5920974 MS.gene09683:intron 50.0%
AGAGGGAAAAAAGTGAGCCC+AGG - chr5.2:5923600-5923619 None:intergenic 50.0%
ATGCGGAGAAAGGGGGTTTA+TGG + chr5.2:5920851-5920870 MS.gene09683:intron 50.0%
CACCAACAAGCCAAACCAAG+TGG - chr5.2:5921599-5921618 None:intergenic 50.0%
CTGCAGACAAGTCTCCATAG+AGG + chr5.2:5923496-5923515 MS.gene09683:intron 50.0%
CTTGACCAAAAACGCCTGAC+TGG + chr5.2:5920335-5920354 MS.gene09683:intron 50.0%
CTTGTTCCGGACTGAGCAAA+TGG - chr5.2:5921141-5921160 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr5.2:5921650-5921669 None:intergenic 50.0%
GACAAGTCTCCATAGAGGAC+GGG + chr5.2:5923501-5923520 MS.gene09683:intron 50.0%
GGACTCTTCACAATCCCCAA+AGG - chr5.2:5920892-5920911 None:intergenic 50.0%
GGATGGCCCAATGTTGCATT+GGG + chr5.2:5921093-5921112 MS.gene09683:intron 50.0%
TGATAGGGATACAGCTGGAC+AGG + chr5.2:5921857-5921876 MS.gene09683:intron 50.0%
TGCTGCTGCATTACCTGGAA+TGG + chr5.2:5923984-5924003 MS.gene09683:CDS 50.0%
TGGATGGCCCAATGTTGCAT+TGG + chr5.2:5921092-5921111 MS.gene09683:intron 50.0%
TTCCGGACTGAGCAAATGGT+CGG - chr5.2:5921137-5921156 None:intergenic 50.0%
TTCTTGGGTGACCAATCCGT+TGG + chr5.2:5920137-5920156 MS.gene09683:CDS 50.0%
TTTGGATGGAGGGTCTTGGT+GGG + chr5.2:5922179-5922198 MS.gene09683:intron 50.0%
! CATGAAGCGAGTGATGATGC+TGG - chr5.2:5920168-5920187 None:intergenic 50.0%
! GCACAGTGTGCCACTAACAA+CGG - chr5.2:5920942-5920961 None:intergenic 50.0%
! TTTTGCTTCCCCGTCCTCTA+TGG - chr5.2:5923513-5923532 None:intergenic 50.0%
!! GCGAGATTTTAGGAGCAACG+TGG + chr5.2:5921001-5921020 MS.gene09683:intron 50.0%
!! TCCCACTTGGTTTGGCTTGT+TGG + chr5.2:5921594-5921613 MS.gene09683:intron 50.0%
!! TGGCTTGTTGGTGTTGGCTT+GGG + chr5.2:5921606-5921625 MS.gene09683:intron 50.0%
!! TTGGCTTGTTGGTGTTGGCT+TGG + chr5.2:5921605-5921624 MS.gene09683:intron 50.0%
ACTCTTTGTACACCCCCGTG+AGG - chr5.2:5921073-5921092 None:intergenic 55.0%
ATGAATGGCGTCCGATGTGG+TGG + chr5.2:5920748-5920767 MS.gene09683:intron 55.0%
CAGATGAATGGCGTCCGATG+TGG + chr5.2:5920745-5920764 MS.gene09683:intron 55.0%
CCAAGAACGGAAACAGGACC+CGG - chr5.2:5923135-5923154 None:intergenic 55.0%
CCTGATTGTTGCGACCCTCA+CGG + chr5.2:5921055-5921074 MS.gene09683:intron 55.0%
CCTGTTCTTGTTGGACAGGC+CGG + chr5.2:5922507-5922526 MS.gene09683:intron 55.0%
CGGACGCCATTCATCTGATC+AGG - chr5.2:5920742-5920761 None:intergenic 55.0%
CGTGAGGGTCGCAACAATCA+GGG - chr5.2:5921057-5921076 None:intergenic 55.0%
CTCTTTGTACACCCCCGTGA+GGG - chr5.2:5921072-5921091 None:intergenic 55.0%
CTGATTGTTGCGACCCTCAC+GGG + chr5.2:5921056-5921075 MS.gene09683:intron 55.0%
GCGGATCCATAACCGTTGAG+AGG - chr5.2:5920964-5920983 None:intergenic 55.0%
GGAAACAGGACCCGGCTAAA+TGG - chr5.2:5923127-5923146 None:intergenic 55.0%
GTTTGGATGGAGGGTCTTGG+TGG + chr5.2:5922178-5922197 MS.gene09683:intron 55.0%
TAGGAGCAACGTGGGTGATG+TGG + chr5.2:5921010-5921029 MS.gene09683:intron 55.0%
TCCGGACTGAGCAAATGGTC+GGG - chr5.2:5921136-5921155 None:intergenic 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr5.2:5921647-5921666 None:intergenic 55.0%
TGATTGTTGCGACCCTCACG+GGG + chr5.2:5921057-5921076 MS.gene09683:intron 55.0%
TGGCACACTGTGCCTCTCAA+CGG + chr5.2:5920949-5920968 MS.gene09683:intron 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr5.2:5921632-5921651 MS.gene09683:intron 55.0%
TTGGATGGAGGGTCTTGGTG+GGG + chr5.2:5922180-5922199 MS.gene09683:intron 55.0%
! CGAAGAGGTGCGAACAGAGA+GGG + chr5.2:5922559-5922578 MS.gene09683:CDS 55.0%
! GAAGAGGTGCGAACAGAGAG+GGG + chr5.2:5922560-5922579 MS.gene09683:CDS 55.0%
! GGGGGTGTACAAAGAGTGGA+TGG + chr5.2:5921076-5921095 MS.gene09683:intron 55.0%
! TCACGGGGGTGTACAAAGAG+TGG + chr5.2:5921072-5921091 MS.gene09683:intron 55.0%
! TCGAAGAGGTGCGAACAGAG+AGG + chr5.2:5922558-5922577 MS.gene09683:CDS 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - chr5.2:5921633-5921652 None:intergenic 55.0%
!! CTTTGTGACCTCTGGAACGG+CGG + chr5.2:5920779-5920798 MS.gene09683:intron 55.0%
!! TTGGTGTTGGCTTGGGACCT+TGG + chr5.2:5921613-5921632 MS.gene09683:intron 55.0%
!! TTTGTGACCTCTGGAACGGC+GGG + chr5.2:5920780-5920799 MS.gene09683:intron 55.0%
CCGGCCTGTCCAACAAGAAC+AGG - chr5.2:5922510-5922529 None:intergenic 60.0%
CCGGGTCCTGTTTCCGTTCT+TGG + chr5.2:5923132-5923151 MS.gene09683:intron 60.0%
CCGTGAGGGTCGCAACAATC+AGG - chr5.2:5921058-5921077 None:intergenic 60.0%
GATTGTTGCGACCCTCACGG+GGG + chr5.2:5921058-5921077 MS.gene09683:intron 60.0%
GCCCGACCATTTGCTCAGTC+CGG + chr5.2:5921132-5921151 MS.gene09683:intron 60.0%
GGCGCAAGAGCCGTTGTTAG+TGG + chr5.2:5920929-5920948 MS.gene09683:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr5.2:5921639-5921658 MS.gene09683:intron 60.0%
TCTTGGTGGGGAGAGGAGGA+AGG + chr5.2:5922192-5922211 MS.gene09683:intron 60.0%
! TCGGAGTGTCTGCACTCTGC+AGG - chr5.2:5920814-5920833 None:intergenic 60.0%
!! TTGTGACCTCTGGAACGGCG+GGG + chr5.2:5920781-5920800 MS.gene09683:intron 60.0%
AGGGTCTTGGTGGGGAGAGG+AGG + chr5.2:5922188-5922207 MS.gene09683:intron 65.0%
TGGAGGGTCTTGGTGGGGAG+AGG + chr5.2:5922185-5922204 MS.gene09683:intron 65.0%
!! TGTGACCTCTGGAACGGCGG+GGG + chr5.2:5920782-5920801 MS.gene09683:intron 65.0%
ACACACCCCCGCCGTTCCAG+AGG - chr5.2:5920790-5920809 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 5920098 5924110 5920098 ID=MS.gene09683
chr5.2 mRNA 5920098 5924110 5920098 ID=MS.gene09683.t1;Parent=MS.gene09683
chr5.2 exon 5920098 5920214 5920098 ID=MS.gene09683.t1.exon1;Parent=MS.gene09683.t1
chr5.2 CDS 5920098 5920214 5920098 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
chr5.2 exon 5921426 5921496 5921426 ID=MS.gene09683.t1.exon2;Parent=MS.gene09683.t1
chr5.2 CDS 5921426 5921496 5921426 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
chr5.2 exon 5921863 5921951 5921863 ID=MS.gene09683.t1.exon3;Parent=MS.gene09683.t1
chr5.2 CDS 5921863 5921951 5921863 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
chr5.2 exon 5922525 5922636 5922525 ID=MS.gene09683.t1.exon4;Parent=MS.gene09683.t1
chr5.2 CDS 5922525 5922636 5922525 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
chr5.2 exon 5923502 5923592 5923502 ID=MS.gene09683.t1.exon5;Parent=MS.gene09683.t1
chr5.2 CDS 5923502 5923592 5923502 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
chr5.2 exon 5923967 5924110 5923967 ID=MS.gene09683.t1.exon6;Parent=MS.gene09683.t1
chr5.2 CDS 5923967 5924110 5923967 ID=cds.MS.gene09683.t1;Parent=MS.gene09683.t1
Gene Sequence

>MS.gene09683

ATGGCGCCAGTATCAGCTTTGGCGAAGTACAAACTGGTGTTCTTGGGTGACCAATCCGTTGGTAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGTATCTTCAATATTCATTCATTTCTCAATTTGATTTGATTTTATTGGATTCACTTGCGTCCCTCTTTTTGAATAACATTTTCCATTTATTATAGTATTCATAATGTTGGATTTGACTCTACTTGACCAAAAACGCCTGACTGGAACTTAATAACAAAAATGAATAACTGCTCAAACTCTTTTTTATATCTTTCATTCTCTTATAATTTGATCCATATAGGATTTGAAATCGCGGTCTTGTTATGATCCTGAAAAATGCACAATTTTACTGTTAAATACGCCTGATGTGATTTGCAGTGACATCAAATACCTTGATTTAGCATTCAATCTCCAAAGTGAATCACCCTTGGAGATTGTATGCCAAAATCTATTTCACTGAGTTGTTGCTTTCTGCACAAATTCGTTTTGGTTTTTTTTTTTTTTTTTTTTAGTATTATGTGTACACTATGCAGTGTTTGCATGGTATGCTTGTAATAATCCAGTTTAATAAGTTCAGATTCGAATTACTTTTTAGTATTGATCTAACCTGATCAGATGAATGGCGTCCGATGTGGTGGTTTTGAATCTTTGTGACCTCTGGAACGGCGGGGGTGTGTACCTGCAGAGTGCAGACACTCCGACTGCTCATGTCACTAAAATGCGGAGAAAGGGGGTTTATGGTTGAATCGAATCGTACCTTTGGGGATTGTGAAGAGTCCCCTTTATATAGTGAGGAGGCGCAAGAGCCGTTGTTAGTGGCACACTGTGCCTCTCAACGGTTATGGATCCGCAGAGATCGTAATGTTGAGCGAGATTTTAGGAGCAACGTGGGTGATGTGGCAATTCAGTTTGAATTGGACTCCCTGATTGTTGCGACCCTCACGGGGGTGTACAAAGAGTGGATGGCCCAATGTTGCATTGGGCCGATATTTAAAATTGGCCCGACCATTTGCTCAGTCCGGAACAAGTATCCTGTTTCCATAAACAACTTAATTAAGCACTTATCATATAAATACTTAAGTCTAACAAAAGTTAAAATCAAGTCAAACTGTTTTCATGTAAGTTATAAATAAGCTCCTTTTTAACCTATCATGGAGAGCTTATGGAGATAAACTAAAAATAGCTCATGGAAATGTTATAACCTGTTTCATAAGTTATTCTTAGCAAACATACAAATGCTTATATCAGTAGATAAGCTCCTTAACTTATTATGATTTTATTCTTTTCATACAGGCAACAATCGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTACAGTTGTGGTAAGAATTAATATACTAGATCAACATCTCGTACTATAAACATGATAGCAAAATATTCCTCAGTATCCTGTACTGAAGTTAACAAGTGTTTAACTAATCCCACTTGGTTTGGCTTGTTGGTGTTGGCTTGGGACCTTGGAGTGTGCTCCTCCTCAAGGTCTCAGGTTCGATTCGATTCTCCCTAATGCCAATTTGGGTAGGCTAATTTAGCTTCTTCAAAAAAAGTGTTTATCTAATAAACATTTAGTTTCTACATCAGTACTTATATTTTTGGTGCTGAAGTTTATTTTTTTAATATTTTTATTTTTTTACTTTGTTTTTGGATTCTGGTTTTGAACTGTTCATCCTTTCATTTTGTTCTGATAGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATCAGAGACTCATCCGTAGCCGTTATTGTATATGATGTTGCAAGTAAGTTGTTTGGGGCTTGTTTTCCTTTCACCTAGTATTGTATTGTACTTACACACAATCTTTTTGGTTGGACACATCTTTTGCTTCTTAGCAGTTGTTAATCTGATCGAAGCTGCTAATTTATCTTCTTATTGGTTTTTAACATTTTGATAGTAAACCTGCAAACTTAACATTATTTCAAATTCTGTGAGCTGTTGCAGTAGGATGCCATTATACCTTAGAATATGTTTGGATGGAGGGTCTTGGTGGGGAGAGGAGGAAGGACTTATTTTTCTATTTTAAATTAAGGAAGCTACAAAATGTTTCTAAGATGTTACTCCTTCATTTTTTTGAATAGAATTAGCTCTGCAAAACCCATCTCCTAAACATATCCTAAGGAAAGGAGCATAATGATAAAGTGCATTAGCTCTTTAACTCTGTTTATAACCAACCCTCTACTCTACAACAAACCATGACACCGAAACTCCATTCACGATCACTCCTTCTATAGTGTGAATGAATGATGCATTGTCCTAATGTCTGTTAAAATCTTTGTTAATAACACTTTCTGATAAACCTGTTCTTGTTGGACAGGCCGGCAGACTTTCCTAAATACAACAAAGTGGATCGAAGAGGTGCGAACAGAGAGGGGCAGTGATGTCATTATTGTTCTTGTTGGGAACAAAACTGATCTCGTTGAAAAGAGGTAATGTGCAATGAATGAAAATAATGATTTAAGCTAGAATTAAAATTAGGAACTATTGGTAAAGATAATTACAAATAGGAATTATTAACCATACCTGCATAAGAACCTAATTAACCACTCGTTTGGCTAGTTTTTCTGAAACCACAACTGTTTTTGCTGAGAATTATTAAATTGTGATCGGAATCGCTTTGGAAATTTTCAGACTGATTGCACTTGCTGATTTTCCTTGGTTCTTTCCATTGCACTCTTTTCTCCTGTATATTATCCAATTACCCTTGACATCTGACATATGAATAAGTACTTGCCACTGCACACATATAAGTTGTTCAAAATAAATAAATTGTTGGGTTTGGAGTTGGAAAACTACTTTGAATTGATAATTCTTATTTCCTTTTCTACCAAGGCAAGATTCTCTAGCATGGGATGTAGGCATGCTTACTACTTGACTGCCAAAAATGCATGTTTTCTCCATCTTTTCACATGTACTCCATTTAGCCGGGTCCTGTTTCCGTTCTTGGTTACAGCTTAAACTAGATATGGCTAGTTGGCCTATCTTGGAGACCATACTAAGAAATTAGGATGTTGCTTGATAGTTAAATTCTAAAATGGTGCATTGCATGCAGGTTGATCCTAATCCTGAATCCTGTCATAGAAGACAGTCTTGATCATCGGTGAAAAGCCTTAATCTAGTTTCATTTCATGTTTGAAAGAGTTCTCAGTTTTTTTCTGTGCTAACTTGACCCTAAAGATGTTTTACATGCATAGTAACTGCTTGCTGTATATTTATGGAGATGTGTGCTATTGTTACTAACAATCTGAAACTAACTGTTCGGTTTTACTAAATTTTCTTTGTGCGAGTCTGCAGACAAGTCTCCATAGAGGACGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTTATTGAAACTAGCGCCAAAGCTGGATTTAATATTAAGGTAACCTGGGCTCACTTTTTTCCCTCTTTCCATACATCTGCAGTAATCGCTCTGTTTCCCTTTTCTCCCTCTTTCCATATGTATTCAGTAAATTATCTGTTTCCACCAGAATGAAGTGAATTATACAAAATTATGAGATTGGATTCTGTTTCTACTTATTTGGAACTCTTATTATCGACTCTCTACTTGTTATAATTTTAGTGATTTTCACTCCAGCAGTGTTCTTCAATCTAGAAAATTCATTTTGCTTGCATTTGCCAATTCAGTCTCAATCCATGATCATTCTTCTGCATCATTTTTTTTTTCTGTTCTATCAGGGAGATAACTAATGTCAATCTTATTTAGTTCTAATACTTTTTTGGACATCTTTACAGGCCCTTTTTCGGAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACTTGGTTGATGTAAACTTAAAGTCTTCATCTGGGAATGCTCAATCTCAAACTCAATCAAGTGGATGTTCTTGTTGA
Protein sequence

>MS.gene09683.t1

MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDLVDVNLKSSSGNAQSQTQSSGCSC