Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03699.t1 | XP_013455924.1 | 84.7 | 649 | 84 | 1 | 74 | 707 | 112 | 760 | 0.00E+00 | 1084.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03699.t1 | Q42572 | 66.7 | 616 | 190 | 1 | 107 | 707 | 158 | 773 | 5.3e-240 | 832.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03699.t1 | A0A072UVT2 | 84.7 | 649 | 84 | 1 | 74 | 707 | 112 | 760 | 0.0e+00 | 1084.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene03699 | MS.gene071460 | PPI |
MS.gene82109 | MS.gene03699 | PPI |
MS.gene05640 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene90359 | PPI |
MS.gene03699 | MS.gene55626 | PPI |
MS.gene20956 | MS.gene03699 | PPI |
MS.gene79799 | MS.gene03699 | PPI |
MS.gene04079 | MS.gene03699 | PPI |
MS.gene005245 | MS.gene03699 | PPI |
MS.gene042871 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene47284 | PPI |
MS.gene08109 | MS.gene03699 | PPI |
MS.gene21089 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene071456 | PPI |
MS.gene87898 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene90358 | PPI |
MS.gene056051 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene066960 | PPI |
MS.gene005383 | MS.gene03699 | PPI |
MS.gene03699 | MS.gene49838 | PPI |
MS.gene04418 | MS.gene03699 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03699.t1 | MTR_4g057345 | 83.657 | 722 | 99 | 3 | 1 | 707 | 43 | 760 | 0.0 | 1193 |
MS.gene03699.t1 | MTR_4g057340 | 82.133 | 722 | 108 | 3 | 1 | 707 | 1 | 716 | 0.0 | 1169 |
MS.gene03699.t1 | MTR_8g468400 | 65.714 | 630 | 198 | 3 | 93 | 707 | 72 | 698 | 0.0 | 849 |
MS.gene03699.t1 | MTR_7g082860 | 35.804 | 634 | 369 | 8 | 110 | 707 | 765 | 1396 | 4.81e-135 | 433 |
MS.gene03699.t1 | MTR_7g082860 | 34.219 | 640 | 358 | 9 | 110 | 707 | 765 | 1383 | 8.00e-121 | 395 |
MS.gene03699.t1 | MTR_7g082860 | 35.155 | 549 | 321 | 6 | 110 | 623 | 765 | 1313 | 2.29e-109 | 362 |
MS.gene03699.t1 | MTR_7g082860 | 35.167 | 509 | 295 | 6 | 110 | 583 | 765 | 1273 | 3.68e-98 | 330 |
MS.gene03699.t1 | MTR_7g082860 | 33.418 | 392 | 237 | 4 | 110 | 477 | 765 | 1156 | 1.51e-65 | 237 |
MS.gene03699.t1 | MTR_2g038030 | 25.646 | 542 | 306 | 25 | 214 | 706 | 103 | 596 | 2.93e-26 | 115 |
MS.gene03699.t1 | MTR_2g038030 | 25.646 | 542 | 306 | 25 | 214 | 706 | 103 | 596 | 3.06e-26 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03699.t1 | AT1G08130 | 61.304 | 721 | 259 | 4 | 7 | 707 | 53 | 773 | 0.0 | 889 |
MS.gene03699.t1 | AT1G49250 | 61.197 | 585 | 209 | 3 | 139 | 707 | 58 | 640 | 0.0 | 719 |
MS.gene03699.t1 | AT1G66730 | 35.514 | 642 | 375 | 9 | 103 | 707 | 744 | 1383 | 3.63e-128 | 415 |
MS.gene03699.t1 | AT5G57160 | 24.532 | 534 | 296 | 25 | 214 | 692 | 104 | 585 | 5.56e-20 | 96.3 |
MS.gene03699.t1 | AT5G57160 | 28.571 | 266 | 139 | 10 | 463 | 692 | 1 | 251 | 2.13e-15 | 80.9 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGATTTGTTGTACCTTAA+TGG | 0.213245 | 4.3:-43745166 | MS.gene03699:CDS |
ATTGAGACAGATACATTTCT+TGG | 0.216627 | 4.3:-43746636 | MS.gene03699:intron |
ATCCGAGTTCGGTTGTTTGC+TGG | 0.220406 | 4.3:-43752139 | MS.gene03699:CDS |
TCAAAAGGAGACTTAATTTC+AGG | 0.241789 | 4.3:+43747069 | None:intergenic |
CCCACTGCAGCTCGGTAAAC+AGG | 0.256103 | 4.3:+43742960 | None:intergenic |
TTAATTTCAGGAGGCGGTTT+AGG | 0.273994 | 4.3:+43747081 | None:intergenic |
TATAAATTTCCACAGGAATC+TGG | 0.277256 | 4.3:-43747351 | MS.gene03699:intron |
TTGTTCTTACCACCGGTTAA+TGG | 0.289073 | 4.3:-43741877 | MS.gene03699:CDS |
TCTTCATGAACTGTTTCTTC+TGG | 0.297103 | 4.3:+43752263 | None:intergenic |
CGCATGATGCTTTGACTATT+AGG | 0.301187 | 4.3:-43751326 | MS.gene03699:CDS |
ACATCTTAAGTCTCAGTATA+AGG | 0.305959 | 4.3:-43751859 | MS.gene03699:intron |
AGAAGGTGGTGGTTTATTCT+TGG | 0.318224 | 4.3:+43752406 | None:intergenic |
TAGGGTTTATAACGGTTTCT+TGG | 0.328922 | 4.3:+43752321 | None:intergenic |
GAAGAAGTGTGTGGCCATTA+AGG | 0.333388 | 4.3:+43745152 | None:intergenic |
TGGTGGTTTATTCTTGGATT+TGG | 0.346524 | 4.3:+43752412 | None:intergenic |
TTTCAAAGCATTTGTAAGAT+AGG | 0.347737 | 4.3:-43743473 | MS.gene03699:intron |
TCCCTAGATTTGGTACCTAT+TGG | 0.348832 | 4.3:-43743753 | MS.gene03699:CDS |
TATTGGTGCTTTCCATGGTC+AGG | 0.351202 | 4.3:-43743736 | MS.gene03699:CDS |
TAATGGCCACACACTTCTTC+AGG | 0.352083 | 4.3:-43745149 | MS.gene03699:CDS |
CACCAATAGGTACCAAATCT+AGG | 0.352911 | 4.3:+43743751 | None:intergenic |
TTTGTGTGGGGATGAAGAAC+GGG | 0.357195 | 4.3:+43752346 | None:intergenic |
ACAGAAAATCCGTCCTTTCC+AGG | 0.366435 | 4.3:-43745412 | MS.gene03699:intron |
CGGTGATGCTTCGATCATTA+AGG | 0.367543 | 4.3:-43751913 | MS.gene03699:CDS |
ACTCTCCAGGGATCACTGTC+AGG | 0.384404 | 4.3:+43741689 | None:intergenic |
AATTGTGTCTGCACTCCTTA+AGG | 0.389871 | 4.3:-43746880 | MS.gene03699:CDS |
GGCGCATGAAGGGTTAGAAT+TGG | 0.390622 | 4.3:-43751940 | MS.gene03699:CDS |
GAGCCAGGGACCTTTGGTTT+CGG | 0.395414 | 4.3:+43743286 | None:intergenic |
AGGGTTTATAACGGTTTCTT+GGG | 0.397531 | 4.3:+43752322 | None:intergenic |
ATGTTATTGCTACCGTTTCA+AGG | 0.405092 | 4.3:-43746553 | MS.gene03699:intron |
TCCGAGTTCGGTTGTTTGCT+GGG | 0.407250 | 4.3:-43752138 | MS.gene03699:CDS |
TGTAGCAATGGAAGACATAA+AGG | 0.411750 | 4.3:-43745209 | MS.gene03699:CDS |
GATGAAGAACGGGGAGGAGT+AGG | 0.413699 | 4.3:+43752356 | None:intergenic |
ATATATAATCCGTTTGCTAC+AGG | 0.417845 | 4.3:-43747256 | MS.gene03699:intron |
TTCCACGTTTAGTTCGAGTT+TGG | 0.420452 | 4.3:-43742771 | MS.gene03699:CDS |
TTTACTCCTGGCGTTCCAGT+TGG | 0.421402 | 4.3:-43746825 | MS.gene03699:CDS |
TTCCAGGGAAAATTGCGAAT+TGG | 0.425394 | 4.3:-43747165 | MS.gene03699:intron |
GGAGTAAAATCACACTTCAT+TGG | 0.425399 | 4.3:+43746840 | None:intergenic |
CAGTTGTTTGACCGCTTTGA+GGG | 0.425801 | 4.3:+43744244 | None:intergenic |
CCTCAAAGCGGTCAAACAAC+TGG | 0.426751 | 4.3:-43744243 | MS.gene03699:CDS |
ATGAAGAACGGGGAGGAGTA+GGG | 0.427122 | 4.3:+43752357 | None:intergenic |
CACATTTCATCTTATTGTAA+AGG | 0.431405 | 4.3:-43751292 | MS.gene03699:intron |
GTACCTATTGGTGCTTTCCA+TGG | 0.433386 | 4.3:-43743741 | MS.gene03699:CDS |
CAATCTCTCTTGACTGCATT+AGG | 0.435218 | 4.3:-43747132 | MS.gene03699:CDS |
TGGGATAATCGCCGAATTGA+AGG | 0.435938 | 4.3:-43752201 | MS.gene03699:CDS |
TTTGACAGCATAGGCCCAAC+TGG | 0.438769 | 4.3:+43746810 | None:intergenic |
TTGTCGAAGGCGGAGGGTGG+TGG | 0.440778 | 4.3:+43752458 | None:intergenic |
CCAGTTGTTTGACCGCTTTG+AGG | 0.440848 | 4.3:+43744243 | None:intergenic |
CACTCCTTAAGGATGGTGTA+TGG | 0.442444 | 4.3:-43746869 | MS.gene03699:CDS |
GACTGTGAGACATGCTAAAC+CGG | 0.443932 | 4.3:-43752009 | MS.gene03699:CDS |
AATCAATTAATCCTGATGTA+TGG | 0.445341 | 4.3:-43743166 | MS.gene03699:CDS |
TTTCCACAGGAATCTGGAAA+AGG | 0.447963 | 4.3:-43747345 | MS.gene03699:intron |
GGATTTGGCGGTGCGCGCGT+TGG | 0.452159 | 4.3:+43752427 | None:intergenic |
ATTTAGGTTTAGTTGCGATT+GGG | 0.453255 | 4.3:-43751377 | MS.gene03699:CDS |
AGCATATCGTCACCATTAAC+CGG | 0.456663 | 4.3:+43741865 | None:intergenic |
GTTCCCATACACCATCCTTA+AGG | 0.456907 | 4.3:+43746865 | None:intergenic |
TAAACCGGAGGATCTTGTTC+CGG | 0.459030 | 4.3:-43751994 | MS.gene03699:CDS |
GGCGAATTTCGATCCGAGTT+CGG | 0.461619 | 4.3:-43752150 | MS.gene03699:CDS |
CCGCTTTGAGGGTTCATATG+TGG | 0.463761 | 4.3:+43744255 | None:intergenic |
TTACTCCTGGCGTTCCAGTT+GGG | 0.465311 | 4.3:-43746824 | MS.gene03699:CDS |
TGTTCCGGTTGTTTATTTGT+CGG | 0.465824 | 4.3:-43751979 | MS.gene03699:CDS |
AGCTCGGTAAACAGGGCTAA+TGG | 0.467833 | 4.3:+43742968 | None:intergenic |
CAGTTCCACATTCACTCTCC+AGG | 0.471994 | 4.3:+43741676 | None:intergenic |
TAGAATTTCAGATACACTCT+TGG | 0.474264 | 4.3:+43746782 | None:intergenic |
GATTTAGGTTTAGTTGCGAT+TGG | 0.475284 | 4.3:-43751378 | MS.gene03699:CDS |
CCCTGTTTACCGAGCTGCAG+TGG | 0.477713 | 4.3:-43742961 | MS.gene03699:CDS |
GTGACGATATGCTGATCAGC+AGG | 0.479763 | 4.3:-43741855 | MS.gene03699:CDS |
AATCGCCGAATTGAAGGAAA+AGG | 0.483991 | 4.3:-43752195 | MS.gene03699:CDS |
GCGCATGAAGGGTTAGAATT+GGG | 0.486390 | 4.3:-43751939 | MS.gene03699:CDS |
TGATGCCTTGTAGGAGTGTA+TGG | 0.487339 | 4.3:-43743536 | MS.gene03699:intron |
ATCACTTCATCTTCTTCCAA+TGG | 0.487905 | 4.3:-43752221 | MS.gene03699:CDS |
CATGAGTTTGTCGAAGGCGG+AGG | 0.488155 | 4.3:+43752451 | None:intergenic |
GGTAAACAGGGCTAATGGTC+AGG | 0.489374 | 4.3:+43742973 | None:intergenic |
TGACCATGGAAAGCACCAAT+AGG | 0.491377 | 4.3:+43743738 | None:intergenic |
GTTGTTATTAGGGTTTATAA+CGG | 0.492400 | 4.3:+43752313 | None:intergenic |
GGATGCCTCTTCGTCTGAGC+AGG | 0.492405 | 4.3:-43742731 | MS.gene03699:intron |
TCGGAATCACTTTAGAGCTA+AGG | 0.493056 | 4.3:+43743305 | None:intergenic |
TCACTTCATCTTCTTCCAAT+GGG | 0.494507 | 4.3:-43752220 | MS.gene03699:CDS |
GGGCACAGTAGATTCCAATA+AGG | 0.495292 | 4.3:-43742940 | MS.gene03699:intron |
TTCCACAGGAATCTGGAAAA+GGG | 0.499181 | 4.3:-43747344 | MS.gene03699:intron |
GATTAGCTTACCTCTTCAAA+AGG | 0.500427 | 4.3:+43747054 | None:intergenic |
TTCGCCGACAAATAAACAAC+CGG | 0.501593 | 4.3:+43751975 | None:intergenic |
CAATTCGGCGATTATCCCAT+TGG | 0.504118 | 4.3:+43752205 | None:intergenic |
TCTTCCCTGACAGTGATCCC+TGG | 0.506516 | 4.3:-43741694 | MS.gene03699:CDS |
TTCGCAACTGAAGATTAAAC+CGG | 0.513749 | 4.3:-43752171 | MS.gene03699:CDS |
AGCAAACGGATTATATATAG+AGG | 0.513938 | 4.3:+43747261 | None:intergenic |
TGGTTTATTCTTGGATTTGG+CGG | 0.514227 | 4.3:+43752415 | None:intergenic |
ATAGGCCCAACTGGAACGCC+AGG | 0.516174 | 4.3:+43746819 | None:intergenic |
AGAATTGCGCCGGCGCATGA+AGG | 0.520567 | 4.3:-43751951 | MS.gene03699:CDS |
TCCAGACTCTTCCTCAAAAG+AGG | 0.521146 | 4.3:+43744603 | None:intergenic |
AATCATATTGTTCTTACCAC+CGG | 0.524317 | 4.3:-43741884 | MS.gene03699:CDS |
GAAGATGAGGAAGAAGGTGG+TGG | 0.528267 | 4.3:+43752395 | None:intergenic |
AATTCATTCACAGCTAGAAA+AGG | 0.529096 | 4.3:+43741716 | None:intergenic |
TTTCAGGCATACTATAAATG+TGG | 0.531793 | 4.3:-43743191 | MS.gene03699:intron |
CACAATCAGTTGCAGCAAGA+AGG | 0.532375 | 4.3:+43747286 | None:intergenic |
CTTCTGTGTACACTGCAGCT+TGG | 0.532632 | 4.3:+43747109 | None:intergenic |
AATTCTAACCCTTCATGCGC+CGG | 0.534844 | 4.3:+43751942 | None:intergenic |
CTTGCGTCAAACCATACATC+AGG | 0.535275 | 4.3:+43743155 | None:intergenic |
TCAGACGAAGAGGCATCCTC+AGG | 0.537332 | 4.3:+43742736 | None:intergenic |
TCCCAGCAAACAACCGAACT+CGG | 0.542601 | 4.3:+43752137 | None:intergenic |
TTGCTATGACAACAATAAAG+AGG | 0.543019 | 4.3:-43743498 | MS.gene03699:CDS |
TGCAGTCAAGAGAGATTGCT+CGG | 0.547919 | 4.3:+43747137 | None:intergenic |
GAAACGGTAGCAATAACATC+AGG | 0.548259 | 4.3:+43746557 | None:intergenic |
ATGCAACGAGTTCACAATCA+AGG | 0.553622 | 4.3:+43745448 | None:intergenic |
ACCAATAGGTACCAAATCTA+GGG | 0.555734 | 4.3:+43743752 | None:intergenic |
GAATTGCAACCTGTAGCAAA+CGG | 0.557122 | 4.3:+43747247 | None:intergenic |
CATGGTCAGGGTAAACGCAC+AGG | 0.558347 | 4.3:-43743723 | MS.gene03699:intron |
GTCGGCGAATAGAATTGCGC+CGG | 0.559474 | 4.3:-43751961 | MS.gene03699:CDS |
TAGAAGGTGTTACCTCTCTA+CGG | 0.561076 | 4.3:+43745113 | None:intergenic |
CAGATACATTTCTTGGAGAA+CGG | 0.561269 | 4.3:-43746629 | MS.gene03699:CDS |
CCTGTTTACCGAGCTGCAGT+GGG | 0.562687 | 4.3:-43742960 | MS.gene03699:CDS |
TGATGCTTTGACTATTAGGA+AGG | 0.566610 | 4.3:-43751322 | MS.gene03699:CDS |
GAAGGGTTAGAATTGGGAAT+CGG | 0.567245 | 4.3:-43751933 | MS.gene03699:CDS |
TTGACAAAGCTATTGAAGCA+AGG | 0.570850 | 4.3:-43744522 | MS.gene03699:intron |
CGCTTGCTGATGCGTGTGGA+AGG | 0.570872 | 4.3:-43751890 | MS.gene03699:CDS |
GGAGACTTAATTTCAGGAGG+CGG | 0.572517 | 4.3:+43747075 | None:intergenic |
TATTGTTGTCATAGCAAGCA+AGG | 0.574178 | 4.3:+43743504 | None:intergenic |
ATTGGTGCTTTCCATGGTCA+GGG | 0.574211 | 4.3:-43743735 | MS.gene03699:CDS |
ACTCCTTAAGGATGGTGTAT+GGG | 0.574408 | 4.3:-43746868 | MS.gene03699:CDS |
GTTGGACATGAGTTTGTCGA+AGG | 0.576381 | 4.3:+43752445 | None:intergenic |
TTCTTGGAAGATGAGGAAGA+AGG | 0.576902 | 4.3:+43752389 | None:intergenic |
AACTACATCAAATGTTGTTG+AGG | 0.581234 | 4.3:-43744560 | MS.gene03699:CDS |
ACAACCGGAACAAGATCCTC+CGG | 0.582042 | 4.3:+43751990 | None:intergenic |
TTGGAAGATGAGGAAGAAGG+TGG | 0.583628 | 4.3:+43752392 | None:intergenic |
GGACATGAGTTTGTCGAAGG+CGG | 0.587879 | 4.3:+43752448 | None:intergenic |
GCATCATACGCTGTGAAGAA+CGG | 0.588310 | 4.3:+43751352 | None:intergenic |
TTGGTTGCATTTGACAGCAT+AGG | 0.590130 | 4.3:+43746801 | None:intergenic |
TTATTTCATTTAGGTGTGGG+AGG | 0.590685 | 4.3:-43743009 | MS.gene03699:intron |
TTGTGTGGGGATGAAGAACG+GGG | 0.590958 | 4.3:+43752347 | None:intergenic |
GAATTGCGCCGGCGCATGAA+GGG | 0.597632 | 4.3:-43751950 | MS.gene03699:CDS |
AAAGGAGACTTAATTTCAGG+AGG | 0.598586 | 4.3:+43747072 | None:intergenic |
CTCTCCAGGGATCACTGTCA+GGG | 0.600140 | 4.3:+43741690 | None:intergenic |
GGTTATACTTTGCAGTATGG+GGG | 0.602109 | 4.3:-43743778 | MS.gene03699:intron |
ATGAGATTACCTGGAAAGGA+CGG | 0.603432 | 4.3:+43745403 | None:intergenic |
CCACTGCAGCTCGGTAAACA+GGG | 0.604756 | 4.3:+43742961 | None:intergenic |
GGGAATGAGATTACCTGGAA+AGG | 0.611240 | 4.3:+43745399 | None:intergenic |
TCACAGCTAGAAAAGGTGAC+AGG | 0.612721 | 4.3:+43741723 | None:intergenic |
TAGTTGATGTCGCAAACTGA+AGG | 0.612933 | 4.3:+43744578 | None:intergenic |
AGATTGTGTGCAATCTGTTG+AGG | 0.613989 | 4.3:-43752031 | MS.gene03699:CDS |
AGTTTGTCGAAGGCGGAGGG+TGG | 0.619661 | 4.3:+43752455 | None:intergenic |
ATGAGTTTGTCGAAGGCGGA+GGG | 0.621134 | 4.3:+43752452 | None:intergenic |
TGATCCCTGGAGAGTGAATG+TGG | 0.623398 | 4.3:-43741681 | MS.gene03699:CDS |
CTTGACCTGCTCAGACGAAG+AGG | 0.628783 | 4.3:+43742726 | None:intergenic |
GAACTCGGATCGAAATTCGC+CGG | 0.629211 | 4.3:+43752152 | None:intergenic |
GTGTCTGCACTCCTTAAGGA+TGG | 0.630216 | 4.3:-43746876 | MS.gene03699:CDS |
GATTTGATTAGCAATGAGAG+TGG | 0.633149 | 4.3:-43752071 | MS.gene03699:CDS |
AGTTCCACATTCACTCTCCA+GGG | 0.636240 | 4.3:+43741677 | None:intergenic |
CTACTGTGCCCACTGCAGCT+CGG | 0.638529 | 4.3:+43742952 | None:intergenic |
GAAGTGATGTGGATCTTGCT+CGG | 0.644283 | 4.3:+43752236 | None:intergenic |
TAAAGTGATTCCGAAACCAA+AGG | 0.649475 | 4.3:-43743296 | MS.gene03699:intron |
GGCCAAACTCGAACTAAACG+TGG | 0.653065 | 4.3:+43742769 | None:intergenic |
TCTCAAACATACGGGCACAA+TGG | 0.655867 | 4.3:+43741829 | None:intergenic |
TGGAAGAAGATGAAGTGATG+TGG | 0.658205 | 4.3:+43752225 | None:intergenic |
CTGTGCGTTTACCCTGACCA+TGG | 0.658462 | 4.3:+43743724 | None:intergenic |
TTGGCCTGACAAAACTCCTG+AGG | 0.659712 | 4.3:-43742752 | MS.gene03699:CDS |
TGACGATATGCTGATCAGCA+GGG | 0.678888 | 4.3:-43741854 | MS.gene03699:CDS |
AAGGCGCTTGCTGATGCGTG+TGG | 0.679612 | 4.3:-43751894 | MS.gene03699:CDS |
GTTCTTCACAGCGTATGATG+CGG | 0.698171 | 4.3:-43751350 | MS.gene03699:CDS |
TGTGAGACATGCTAAACCGG+AGG | 0.707628 | 4.3:-43752006 | MS.gene03699:CDS |
TTTACAGTAGAAATGCTGAA+CGG | 0.714187 | 4.3:-43746595 | MS.gene03699:CDS |
CCACATATGAACCCTCAAAG+CGG | 0.720899 | 4.3:-43744255 | MS.gene03699:CDS |
TGTATGGTTTGACGCAAGTG+AGG | 0.722527 | 4.3:-43743150 | MS.gene03699:intron |
TGTGGGGATGAAGAACGGGG+AGG | 0.725555 | 4.3:+43752350 | None:intergenic |
ATATCGTCACCATTAACCGG+TGG | 0.735847 | 4.3:+43741868 | None:intergenic |
GTGATGTGGATCTTGCTCGG+TGG | 0.749769 | 4.3:+43752239 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 43741652 | 43752492 | 43741652 | ID=MS.gene03699 |
chr4.3 | mRNA | 43741652 | 43752492 | 43741652 | ID=MS.gene03699.t1;Parent=MS.gene03699 |
chr4.3 | exon | 43751860 | 43752492 | 43751860 | ID=MS.gene03699.t1.exon1;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43751860 | 43752492 | 43751860 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43751293 | 43751409 | 43751293 | ID=MS.gene03699.t1.exon2;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43751293 | 43751409 | 43751293 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43747257 | 43747358 | 43747257 | ID=MS.gene03699.t1.exon3;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43747257 | 43747358 | 43747257 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43747065 | 43747181 | 43747065 | ID=MS.gene03699.t1.exon4;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43747065 | 43747181 | 43747065 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43746767 | 43746952 | 43746767 | ID=MS.gene03699.t1.exon5;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43746767 | 43746952 | 43746767 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43746554 | 43746648 | 43746554 | ID=MS.gene03699.t1.exon6;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43746554 | 43746648 | 43746554 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43745413 | 43745500 | 43745413 | ID=MS.gene03699.t1.exon7;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43745413 | 43745500 | 43745413 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43745126 | 43745257 | 43745126 | ID=MS.gene03699.t1.exon8;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43745126 | 43745257 | 43745126 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43744523 | 43744635 | 43744523 | ID=MS.gene03699.t1.exon9;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43744523 | 43744635 | 43744523 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43744214 | 43744315 | 43744214 | ID=MS.gene03699.t1.exon10;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43744214 | 43744315 | 43744214 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43743724 | 43743785 | 43743724 | ID=MS.gene03699.t1.exon11;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43743724 | 43743785 | 43743724 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43743474 | 43743545 | 43743474 | ID=MS.gene03699.t1.exon12;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43743474 | 43743545 | 43743474 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43743297 | 43743370 | 43743297 | ID=MS.gene03699.t1.exon13;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43743297 | 43743370 | 43743297 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43743151 | 43743207 | 43743151 | ID=MS.gene03699.t1.exon14;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43743151 | 43743207 | 43743151 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43742941 | 43743018 | 43742941 | ID=MS.gene03699.t1.exon15;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43742941 | 43743018 | 43742941 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43742732 | 43742809 | 43742732 | ID=MS.gene03699.t1.exon16;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43742732 | 43742809 | 43742732 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43741841 | 43741908 | 43741841 | ID=MS.gene03699.t1.exon17;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43741841 | 43741908 | 43741841 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
chr4.3 | exon | 43741652 | 43741757 | 43741652 | ID=MS.gene03699.t1.exon18;Parent=MS.gene03699.t1 |
chr4.3 | CDS | 43741652 | 43741757 | 43741652 | ID=cds.MS.gene03699.t1;Parent=MS.gene03699.t1 |
Gene Sequence |
Protein sequence |