AlfalfaGEDB | MS.gene03964

M. sativa cultivar XinJiangDaYe / MS.gene03964

KEGG: K01953
GO: GO:0003674 GO:0003824 GO:0004066 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0032787 GO:0034641 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00733.24 PF13537.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03964.t1	XP_013460286.1	98	586	1	1	1	575	1	586	0.00E+00	1188.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03964.t1	P19251	93.2	586	29	1	1	575	1	586	0.0e+00	1137.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03964.t1	A0A072UXM4	98.0	586	1	1	1	575	1	586	0.0e+00	1188.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene004045	MS.gene03964	PPI
MS.gene021114	MS.gene03964	PPI
MS.gene03964	MS.gene41176	PPI
MS.gene045117	MS.gene03964	PPI
MS.gene052122	MS.gene03964	PPI
MS.gene052207	MS.gene03964	PPI
MS.gene071169	MS.gene03964	PPI
MS.gene30955	MS.gene03964	PPI
MS.gene31156	MS.gene03964	PPI
MS.gene45489	MS.gene03964	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03964.t1	MTR_3g464580	97.952	586	1	1	1	575	1	586	0.0	1194
MS.gene03964.t1	MTR_3g464580	97.642	509	1	1	1	498	1	509	0.0	1037
MS.gene03964.t1	MTR_5g071360	84.300	586	79	3	1	575	1	584	0.0	1028
MS.gene03964.t1	MTR_5g071360	85.519	511	62	2	1	500	1	510	0.0	919
MS.gene03964.t1	MTR_3g464580	96.231	451	5	2	1	440	1	450	0.0	899
MS.gene03964.t1	MTR_3g087220	74.107	560	133	2	1	549	1	559	0.0	889
MS.gene03964.t1	MTR_5g069310	76.224	143	33	1	433	575	2	143	2.63e-70	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene03964.t1	AT3G47340	80.409	587	100	4	1	575	1	584	994
MS.gene03964.t1	AT5G10240	77.477	555	113	2	1	544	1	554	920
MS.gene03964.t1	AT5G65010	77.314	551	113	2	1	540	1	550	915
MS.gene03964.t1	AT5G65010	77.355	552	112	3	1	540	1	551	912
MS.gene03964.t1	AT5G10240	76.937	555	115	3	1	544	1	553	910
MS.gene03964.t1	AT3G47340	82.711	509	76	2	1	498	1	508	899
MS.gene03964.t1	AT3G47340	82.057	418	63	2	1	407	1	417	737
MS.gene03964.t1	AT3G47340	83.498	303	49	1	105	407	1	302	547

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Find 134 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGGTGATTTCTGGAGA+AGG	0.550290	3.2:-55061105	MS.gene03964:CDS
AAATTACACTCATTCTGTGT+AGG	0.565107	3.2:-55062292	MS.gene03964:CDS
AAGAAGGAAGAATTGAGAAA+TGG	0.439977	3.2:-55060663	MS.gene03964:CDS
AAGACCGGGAGTTTCGTAGA+TGG	0.513657	3.2:-55062671	MS.gene03964:CDS
AAGATGGAAATTTCTAATCT+TGG	0.303255	3.2:-55059859	MS.gene03964:CDS
AAGGCGTTCCTCAAAACTAG+AGG	0.639779	3.2:+55062597	None:intergenic
AATAAATCAACATATGCATG+GGG	0.691237	3.2:-55060859	MS.gene03964:CDS
AATAGTTATCACCATGTTGG+TGG	0.545301	3.2:+55063394	None:intergenic
ACAAAAGCTGCTAAACAATG+GGG	0.732585	3.2:-55062319	MS.gene03964:CDS
ACAACAGTTTCATTGTTGCG+AGG	0.640177	3.2:-55062923	MS.gene03964:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGTTGCGGTCTAATA+GGG	-	chr3.2:55062441-55062460	MS.gene03964:intron	30.0%
AAACAAATTGACCAGAGATA+CGG	-	chr3.2:55061765-55061784	MS.gene03964:intron	30.0%
AAACATACTTGACTTTGACA+AGG	-	chr3.2:55060556-55060575	MS.gene03964:intron	30.0%
AAACATCAAAGTTAGCCAAA+AGG	+	chr3.2:55059994-55060013	None:intergenic	30.0%
AAATTACACTCATTCTGTGT+AGG	-	chr3.2:55062029-55062048	MS.gene03964:intron	30.0%
AACATCAAAGTTAGCCAAAA+GGG	+	chr3.2:55059993-55060012	None:intergenic	30.0%
AAGAAGGAAGAATTGAGAAA+TGG	-	chr3.2:55063658-55063677	MS.gene03964:intron	30.0%
ACAACTGAAAGATAAGCATT+GGG	+	chr3.2:55060509-55060528	None:intergenic	30.0%
ACTATAGAATGATCTTTGAG+AGG	-	chr3.2:55064079-55064098	MS.gene03964:intron	30.0%
AGAGAAGATTATACCAAAGA+TGG	-	chr3.2:55064446-55064465	MS.gene03964:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	55059840	55064503	55059840	ID=MS.gene03964
chr3.2	mRNA	55059840	55064503	55059840	ID=MS.gene03964.t1;Parent=MS.gene03964
chr3.2	exon	55064450	55064503	55064450	ID=MS.gene03964.t1.exon1;Parent=MS.gene03964.t1
chr3.2	CDS	55064450	55064503	55064450	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55063311	55063442	55063311	ID=MS.gene03964.t1.exon2;Parent=MS.gene03964.t1
chr3.2	CDS	55063311	55063442	55063311	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55063121	55063216	55063121	ID=MS.gene03964.t1.exon3;Parent=MS.gene03964.t1
chr3.2	CDS	55063121	55063216	55063121	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55062877	55063018	55062877	ID=MS.gene03964.t1.exon4;Parent=MS.gene03964.t1
chr3.2	CDS	55062877	55063018	55062877	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55062590	55062783	55062590	ID=MS.gene03964.t1.exon5;Parent=MS.gene03964.t1
chr3.2	CDS	55062590	55062783	55062590	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55062285	55062446	55062285	ID=MS.gene03964.t1.exon6;Parent=MS.gene03964.t1
chr3.2	CDS	55062285	55062446	55062285	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55062077	55062157	55062077	ID=MS.gene03964.t1.exon7;Parent=MS.gene03964.t1
chr3.2	CDS	55062077	55062157	55062077	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55061023	55061244	55061023	ID=MS.gene03964.t1.exon8;Parent=MS.gene03964.t1
chr3.2	CDS	55061023	55061244	55061023	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55060783	55060917	55060783	ID=MS.gene03964.t1.exon9;Parent=MS.gene03964.t1
chr3.2	CDS	55060783	55060917	55060783	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55060615	55060695	55060615	ID=MS.gene03964.t1.exon10;Parent=MS.gene03964.t1
chr3.2	CDS	55060615	55060695	55060615	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55060432	55060518	55060432	ID=MS.gene03964.t1.exon11;Parent=MS.gene03964.t1
chr3.2	CDS	55060432	55060518	55060432	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55060230	55060337	55060230	ID=MS.gene03964.t1.exon12;Parent=MS.gene03964.t1
chr3.2	CDS	55060230	55060337	55060230	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1
chr3.2	exon	55059840	55060073	55059840	ID=MS.gene03964.t1.exon13;Parent=MS.gene03964.t1
chr3.2	CDS	55059840	55060073	55059840	ID=cds.MS.gene03964.t1;Parent=MS.gene03964.t1

Gene Sequence

>MS.gene03964

ATGTGTGGTATACTTGCTGTACTTGGTTGCTCTGATGACTCACAAGCTAAGAGGGTTCGCATCCTTGAGCTTTCTCGCAGGCAATTATTCTTCTCATTTTCATGCATACATATACATACATATCTTATATTCCTTTTATATAAATAAATACCCTTTTGGCTAACTTTGATGTTTGTATTCAAAGTTTCTTGTTTTGCATAATTTATTATCCATGATCAAACTCTTATTTACCAAGAGTTTTTTTATTTTTTTTTTTATTTTTGTATTTTGTGGTTTACAAGCTCATGATCAAACTTCCATTCTTATTTTTTAAAACTTGACATGGAGTTTTTATTATATTGATGAGGAAGAATGAAAGAATGGAAGTTCAAAATATTTTGGTTTTAAGAGGGTGTAAGTATTTTTAGCATGTAGTTGCTAAAAATACTAATTAATACATATATGGATATAATATAATATGGTATTTATAATATTATAAATTAATATGATAAGTGATATACAACTAAAGGATACTAGAAAAATCACCAAAATGATGGTGCTTAGTGATGTCTAGTTTCTACTAGTTCATCCAATATTTTGCCATTTGAAAAAAATAAAAAACCATCCAATATTTTAAAGAGAATTATATGTAAAAGTTGAAAATATAATTATCCATTTATATTGGGCCCCAATGCTTATCTTTCAGTTGTAACTTGTAACTACTAGTAGTTTAGGATAAACATACTTGACTTTGACAAGGTGCACAACTATGACACACATTACATAATTTGGGTAAATTTTAGCTTATTGAGAATAAACAAAAGTAAGACATGGGGTCCACATGTTATTTTGATGCAATAATTGGTTCGGCAATTAACCCAACAAAATCAACGAAAAAGAGATAAAATTAATTTGTCCTACATGTGGAATTTTTATTTTAATAAATCACGTGGGAATTTTTAATTACCCGTTCATATACATAAAGTCCAATTAGAATAATTAATAAGTAACTTTGGTTAGTTTGATAAGTAATTTGATTGATCATATATTAATATTTTTGCATATGATGTCACAGATTGAAGCACCGTGGTCCAGATTGGAGTGGGCTCCACCAACATGGTGATAACTATTTGGCTCATCAAAGGTTGGCCATTGTTGATCCTGCTTCTGGTGATCAACCTCTCTTCAATGAAGACAAATCTATTATTGTCACGGTAATAATTAAACCTTGTAATAATATTCTATAGTTTATTACATTTTTTATACTATAAAATGGTAGTAACAAATAAATTTTATCATAAAATTCAGGTGAATGGAGAGATCTACAATCATGAAGACCTCAGGAAACAATTGCCTAATCACAAATTCCGTACACAATGTGACTGTGATGTTATTGCACACCTGGTTAGTATGTCGCGGTCTAGATTGCGGTCGCGGACCGTTATTTAAAACAATAATAATTGTTGTACCATGAATGTTATTGATTTTGGTTATTTTTTATGTTAGTATGAGGAGTATGGAGAAAATTTTGTGGACATGTTGGATGGTATCTTTTCATTTGTTCTGCTGGATACTCGCGACAACAGTTTCATTGTTGCGAGGGATGCTATAGGGGTCACTTCCTTGTACATTGGTTGGGGACTAGATGGTAATTAGAACGAGTTCATTTGTTCAATTCGTAACTATAGAGCGAAAGATTTGAATAATTTGTGACAAGTTTGGCACGTTTTTGTTATTGTAGGTTCTGTTTGGATTGCATCAGAATTAAAAGGGCTGAATGATGAATGTGAACATTTTGAAGTTTTTCCACCTGGTCACTTGTACTCGAGCAAAGACCGGGAGTTTCGTAGATGGTACAATCCTCCATGGTTCAATGAGGCTATTATTCCAACAACCCCTTATGATCCTCTAGTTTTGAGGAACGCCTTTGAGAAGGTAAGATTCACAAACAAATTGACCAGAGATACGGTCTGACAAGAGTTTATAAAGCGCTCAGACAATTCTCACATCTTCAAGTCGGTTCTGTAAAGCCGAGTTAGACTAAATATAACTAATATGATTGCCGTGTTTGATTACAGGCTGTGATAAAAAGGTTGATGACTGATGTGCCGTTCGGTGTTTTACTATCTGGAGGTTTGGATTCTTCATTGGTCGCAGCAGTTACTGCTAGATACCTGGCTGGCACAAAAGCTGCTAAACAATGGGGAGCAAAATTACACTCATTCTGTGTAGGACTTAAGGTATGCATCTATTCTAAATTATGATTGGAAAAGAAATTTTAGTGGATTATTAATTATTTTTAATGAAAAAAAAATTCATTCAAGGTTGTCTAATTGGTTTAATCTTTATTCATGTTATGTTGATTAGGGTGCACCTGACCTTAAGGCTGGAAGAGAAGTAGCAGACTTTTTAGGAACTGTCCATCATGAATTTCAGTTTACTATTCAGGTATATAATCTACTTCAAATATTACTTTTCTGCTCAAAATTGCAAAAATATGTGGGCAAATAGGGCTGATGAGACTTTTGTTATAATCGCATACAGACTTTATAAAAATTAATGTTGCAGTCTTTATTGTGATCGCAAATTTACTTGAAATAGTACTTGTCTACTCAAAATTGCAAAAAAGTTGCGGTCTAATAGGGTTGATGCAACTTTGATGATAATCGCATGCAGACATCAAAAACCTTGGTGTCACTCAGAATTTATGTCACAAATCGACTTGAAATAGTACTTGTCTGCTCAAAATTACGAAAAGTTGCTGTCAAATAGGGCTGATGCGACTTTGATAATATTTGCATGCAGACATCAAAAACATTGATGTCACAGTCTGAATTTGGGTCGCAAATCTACTTCAAATAGTACTTGTCTGCTCAAAATTGCGAAAAGTTGCAGTCAAATAGGGCTGATGCGACTTTGATCATAATCGCACGCTGACATCAAAATACTTGAAGTCACAGTCTAGATTGCGGTCGCACATTTTTATAATTTCATACTTTTTGGTGGTTAAAGGCTAATAATGCCTCGTTTGTACATGGTACTCAGATGTGGTGGTCGGACCCTATGTTATGTCTGGGTATCGACTGACTGATTCTTTGTAAATATTTTGAGACGGTTCTCTTCTTTTATGGTGTGACCATGTAGTACACCTTGTACTATAGTGGCTTCACATCAAGTAGTAATATATTCCATTTTGATGTCTTCAAAAAAAAATATCATAGGGGGCAAACAAAATAATGATTCATTATTTTATTTTATTTTATTTTTGTGGTCTATGTAGGATGGCATAGATGCAATTGAGGATGTCATTTATCATACAGAAACATATGATGTAACTACAATTAGGGCAGCAACACCTATGTTTCTGATGTCTCGAAAGATCAAATCATCAGGAGTCAAATGGGTGATTTCTGGAGAAGGATCTGACGAGATTCTTGGAGGGTATTTGTATTTCCATAAGGCACCAAACAAAGAAGAGTTTCACCAAGAAACATGCCGCAAGGTAATAGAACTACATTACATGGCTCATGTTTGAAGGAAAAAAATGAAGTTGTCGAAGTGAAAGTTTTTGATACGATTAGATAATTTTCTTTTTTTCTTTATGCAGATCAAAGCTCTTCATAGGTATGACTGTTTGAGAGCCAATAAATCAACATATGCATGGGGTCTAGAAGCTAGAGTACCATTTTTGGACAAGGATTTCATCAAAGTTGCAATGGACATTGATCCTGAGTACAAAATGGTATGATACATGAATACAAAAAGTGTCGCTATGAAACATAACTTAAAATGTAACATTTTATTAAGTTTTTTTATTCAATTTGTTCAGATAAAACATGAAGAAGGAAGAATTGAGAAATGGATACTAAGGAAGGCTTTTGATGATGAAGAGAATCCTTACCTTCCTAAGGTACTCAACTCTACTTTCCCATTTACTGCAATTTCTGTCCATAATTTGCAAATTTAATTTGTGAAACTAACATCTTATAAATTTAATATCATGCAGCACATTTTATATAGGCAGAAGGAACAGTTCAGTGATGGAGTTGGCTATGGTTGGATTGATGGTATTAAGGACCATGCTGCAAAACATGTAAACATAAATCCAACATTTTCTTTCCAATTTCATTTTACTTTTGTTGCAAGGCATGTCGCTAATAATTCGTTCTTGAAATTTTTTCGTATAGGTCACTGATAGAATGATGCTCAATGCTTCTCACATCTTTCCTTTCAACACTCCACTTACCAAAGAAGCATATTACTATAGAATGATCTTTGAGAGGTTTTTCCCTCAGGTAACTTAATCAATCAAATCTTGATTTGTCGCCAAGCGACATTGTTATAAAAATAGCTTATACAGAAGAACTTATATGATAAGCACTTAATTAAGTTGTTTATCCCAACATAACCTTAATAAAGGCCTAATCAAATCTCTGTGTTTCGATTTGTAGAACTCGGCAAGACTAACGGTTCCTGGAGGAGCTAGTGTTGCATGTAGCACAGAGAAAGCTATTGAGTGGGATGCTTCTTGGTCAAGCAACCTTGATCCTTCTGGAAGAGCAGCATTTGGAGTTCATAATTCAGCTTATGAAAACCAAGTCAACTCAGTTGCCAAAACTGTAGAGCCAGAGAAGATTATACCAAAGATGGAAATTTCTAATCTTGGAGTTGCCATTCAAAGCTAA

Protein sequence

>MS.gene03964.t1

MCGILAVLGCSDDSQAKRHRGPDWSGLHQHGDNYLAHQRLAIVDPASGDQPLFNEDKSIIVTVNGEIYNHEDLRKQLPNHKFRTQCDCDVIAHLYEEYGENFVDMLDGIFSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWIASELKGLNDECEHFEVFPPGHLYSSKDREFRRWYNPPWFNEAIIPTTPYDPLVLRNAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVTARYLAGTKAAKQWGAKLHSFCVGLKGAPDLKAGREVADFLGTVHHEFQFTIQDGIDAIEDVIYHTETYDVTTIRAATPMFLMSRKIKSSGVKWVISGEGSDEILGGYLYFHKAPNKEEFHQETCRKIKALHRYDCLRANKSTYAWGLEARVPFLDKDFIKVAMDIDPEYKMIKHEEGRIEKWILRKAFDDEENPYLPKHILYRQKEQFSDGVGYGWIDGIKDHAAKHVTDRMMLNASHIFPFNTPLTKEAYYYRMIFERFFPQNSARLTVPGGASVACSTEKAIEWDASWSSNLDPSGRAAFGVHNSAYENQVNSVAKTVEPEKIIPKMEISNLGVAIQS