Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04647.t1 | XP_003625295.1 | 97.4 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 2.00E-184 | 654.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04647.t1 | Q9M2P4 | 78.1 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 1.3e-147 | 523.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04647.t1 | G7KWA3 | 97.4 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 1.4e-184 | 654.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018013 | MS.gene04647 | PPI |
| MS.gene04647 | MS.gene055974 | PPI |
| MS.gene39144 | MS.gene04647 | PPI |
| MS.gene90302 | MS.gene04647 | PPI |
| MS.gene98989 | MS.gene04647 | PPI |
| MS.gene96493 | MS.gene04647 | PPI |
| MS.gene04647 | MS.gene89107 | PPI |
| MS.gene04647 | MS.gene52683 | PPI |
| MS.gene034570 | MS.gene04647 | PPI |
| MS.gene055308 | MS.gene04647 | PPI |
| MS.gene50517 | MS.gene04647 | PPI |
| MS.gene04647 | MS.gene61205 | PPI |
| MS.gene64538 | MS.gene04647 | PPI |
| MS.gene055974 | MS.gene04647 | PPI |
| MS.gene04647 | MS.gene91723 | PPI |
| MS.gene36292 | MS.gene04647 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04647.t1 | MTR_7g093600 | 97.419 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 0.0 | 637 |
| MS.gene04647.t1 | MTR_1g054335 | 80.323 | 310 | 60 | 1 | 1 | 310 | 1 | 309 | 0.0 | 530 |
| MS.gene04647.t1 | MTR_3g091510 | 72.662 | 278 | 71 | 1 | 37 | 309 | 33 | 310 | 7.70e-156 | 439 |
| MS.gene04647.t1 | MTR_1g008120 | 74.906 | 267 | 67 | 0 | 43 | 309 | 52 | 318 | 1.45e-155 | 438 |
| MS.gene04647.t1 | MTR_8g027520 | 72.263 | 274 | 75 | 1 | 36 | 309 | 22 | 294 | 3.52e-154 | 434 |
| MS.gene04647.t1 | MTR_8g027520 | 72.263 | 274 | 75 | 1 | 36 | 309 | 31 | 303 | 5.59e-154 | 434 |
| MS.gene04647.t1 | MTR_3g017590 | 73.333 | 270 | 68 | 1 | 40 | 309 | 38 | 303 | 4.26e-153 | 431 |
| MS.gene04647.t1 | MTR_7g117415 | 73.432 | 271 | 69 | 1 | 39 | 309 | 44 | 311 | 2.14e-151 | 427 |
| MS.gene04647.t1 | MTR_8g038370 | 69.643 | 280 | 77 | 2 | 38 | 309 | 83 | 362 | 6.18e-149 | 422 |
| MS.gene04647.t1 | MTR_5g076660 | 26.277 | 274 | 188 | 6 | 33 | 306 | 7 | 266 | 4.85e-22 | 95.1 |
| MS.gene04647.t1 | MTR_4g094468 | 29.439 | 214 | 138 | 5 | 58 | 270 | 96 | 297 | 1.71e-21 | 93.2 |
| MS.gene04647.t1 | MTR_7g024290 | 26.794 | 209 | 143 | 4 | 59 | 267 | 11 | 209 | 8.93e-19 | 85.5 |
| MS.gene04647.t1 | MTR_2g038430 | 33.333 | 129 | 81 | 2 | 59 | 184 | 25 | 151 | 1.09e-18 | 85.5 |
| MS.gene04647.t1 | MTR_5g067400 | 25.292 | 257 | 169 | 6 | 58 | 310 | 10 | 247 | 7.06e-18 | 82.8 |
| MS.gene04647.t1 | MTR_5g061290 | 31.061 | 132 | 85 | 4 | 59 | 189 | 18 | 144 | 5.38e-17 | 80.5 |
| MS.gene04647.t1 | MTR_5g076370 | 25.847 | 236 | 161 | 6 | 72 | 307 | 47 | 268 | 2.04e-16 | 79.0 |
| MS.gene04647.t1 | MTR_5g076540 | 28.972 | 214 | 132 | 6 | 59 | 267 | 11 | 209 | 2.30e-16 | 77.4 |
| MS.gene04647.t1 | MTR_7g094390 | 28.743 | 167 | 113 | 3 | 59 | 225 | 172 | 332 | 3.82e-16 | 79.0 |
| MS.gene04647.t1 | MTR_5g076520 | 27.419 | 248 | 161 | 5 | 55 | 302 | 7 | 235 | 8.21e-16 | 77.0 |
| MS.gene04647.t1 | MTR_2g038420 | 29.008 | 131 | 90 | 2 | 59 | 189 | 25 | 152 | 1.06e-14 | 73.9 |
| MS.gene04647.t1 | MTR_5g076820 | 25.498 | 251 | 153 | 8 | 59 | 302 | 19 | 242 | 5.95e-14 | 71.2 |
| MS.gene04647.t1 | MTR_5g076720 | 25.475 | 263 | 174 | 7 | 8 | 267 | 37 | 280 | 7.38e-14 | 72.0 |
| MS.gene04647.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 10 | 234 | 3.51e-13 | 69.3 |
| MS.gene04647.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 41 | 265 | 4.08e-13 | 69.3 |
| MS.gene04647.t1 | MTR_1g046640 | 26.230 | 244 | 160 | 7 | 59 | 302 | 11 | 234 | 5.27e-13 | 68.9 |
| MS.gene04647.t1 | MTR_5g076505 | 27.815 | 151 | 103 | 3 | 75 | 225 | 23 | 167 | 6.42e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04647.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 512 |
| MS.gene04647.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 512 |
| MS.gene04647.t1 | AT2G41980 | 76.774 | 310 | 67 | 2 | 1 | 310 | 1 | 305 | 1.15e-180 | 501 |
| MS.gene04647.t1 | AT3G61790 | 76.357 | 258 | 61 | 0 | 52 | 309 | 53 | 310 | 9.35e-156 | 438 |
| MS.gene04647.t1 | AT4G27880 | 72.348 | 264 | 73 | 0 | 46 | 309 | 48 | 311 | 1.57e-151 | 428 |
| MS.gene04647.t1 | AT5G53360 | 74.877 | 203 | 51 | 0 | 107 | 309 | 15 | 217 | 3.32e-118 | 340 |
| MS.gene04647.t1 | AT5G53360 | 74.877 | 203 | 51 | 0 | 107 | 309 | 15 | 217 | 3.32e-118 | 340 |
| MS.gene04647.t1 | AT3G58040 | 74.146 | 205 | 51 | 2 | 1 | 205 | 1 | 203 | 3.46e-109 | 316 |
| MS.gene04647.t1 | AT3G13672 | 50.495 | 202 | 94 | 2 | 111 | 309 | 13 | 211 | 9.34e-71 | 218 |
| MS.gene04647.t1 | AT3G13672 | 44.978 | 229 | 93 | 3 | 111 | 309 | 13 | 238 | 4.24e-65 | 205 |
| MS.gene04647.t1 | AT5G53360 | 74.286 | 105 | 27 | 0 | 205 | 309 | 60 | 164 | 2.32e-56 | 180 |
| MS.gene04647.t1 | AT5G37870 | 38.281 | 128 | 76 | 2 | 58 | 185 | 41 | 165 | 5.61e-24 | 99.4 |
| MS.gene04647.t1 | AT5G37930 | 37.692 | 130 | 78 | 2 | 58 | 187 | 109 | 235 | 1.79e-21 | 93.6 |
| MS.gene04647.t1 | AT5G37890 | 26.721 | 247 | 166 | 6 | 58 | 302 | 47 | 280 | 2.50e-20 | 89.4 |
| MS.gene04647.t1 | AT5G62800 | 27.734 | 256 | 155 | 8 | 58 | 302 | 39 | 275 | 2.72e-19 | 87.4 |
| MS.gene04647.t1 | AT5G62800 | 28.037 | 214 | 130 | 5 | 58 | 261 | 39 | 238 | 1.81e-18 | 84.7 |
| MS.gene04647.t1 | AT5G37910 | 25.692 | 253 | 177 | 6 | 58 | 309 | 34 | 276 | 4.92e-18 | 82.8 |
| MS.gene04647.t1 | AT1G66620 | 30.968 | 155 | 102 | 2 | 23 | 174 | 2 | 154 | 5.28e-18 | 83.2 |
| MS.gene04647.t1 | AT1G66630 | 36.885 | 122 | 73 | 2 | 58 | 177 | 45 | 164 | 4.90e-16 | 77.4 |
| MS.gene04647.t1 | AT1G66660 | 35.714 | 112 | 70 | 1 | 58 | 169 | 102 | 211 | 1.17e-15 | 77.0 |
| MS.gene04647.t1 | AT1G66650 | 32.593 | 135 | 86 | 3 | 58 | 189 | 82 | 214 | 1.20e-15 | 76.6 |
| MS.gene04647.t1 | AT1G66610 | 33.613 | 119 | 75 | 2 | 7 | 121 | 102 | 220 | 2.55e-14 | 71.6 |
Find 74 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCCTTCTTACGGTTTA+TGG | 0.117780 | 7.3:-17146068 | MS.gene04647:CDS |
| TGCGAATCACCGGTCGTATA+TGG | 0.237311 | 7.3:-17145853 | MS.gene04647:CDS |
| GGAGAAAGTGGCTGAATCTT+TGG | 0.299857 | 7.3:-17147205 | MS.gene04647:CDS |
| GACAGGTGGGACAGAGATTA+TGG | 0.312010 | 7.3:+17147262 | None:intergenic |
| CATATGGGCGCAAACTTATA+TGG | 0.315205 | 7.3:-17145997 | MS.gene04647:CDS |
| AGCTTAGAAGTCGGTGCATA+TGG | 0.322324 | 7.3:-17146013 | MS.gene04647:CDS |
| ATGGCCTTCTTACGGTTTAT+GGG | 0.324454 | 7.3:-17146067 | MS.gene04647:CDS |
| CCCACCTGTCACCATGATCT+TGG | 0.343411 | 7.3:-17147249 | MS.gene04647:CDS |
| GCATTTCTGTTTGCACTTTG+AGG | 0.351473 | 7.3:-17146119 | MS.gene04647:CDS |
| TGTTTAAGCTTTGCATAGTA+AGG | 0.352415 | 7.3:+17147138 | None:intergenic |
| TGGATCTGAGTGCTCCGTTA+TGG | 0.353234 | 7.3:-17147073 | MS.gene04647:CDS |
| ACCATGATCTTGGGAATATA+AGG | 0.354435 | 7.3:-17147239 | MS.gene04647:CDS |
| CACTTTGAGGCTTTCCAGCT+TGG | 0.356658 | 7.3:-17146106 | MS.gene04647:CDS |
| TCCACTAGTGTTGGATTGAA+TGG | 0.361198 | 7.3:-17147771 | MS.gene04647:CDS |
| GAATATAAGGTGTTTGGCTC+TGG | 0.367722 | 7.3:-17147226 | MS.gene04647:CDS |
| TTGACTTCAGATTATGAAAC+AGG | 0.369439 | 7.3:-17147837 | MS.gene04647:CDS |
| TGTAAGTGAACAGTTAATCT+TGG | 0.386090 | 7.3:+17147797 | None:intergenic |
| GGATCTGAGTGCTCCGTTAT+GGG | 0.399413 | 7.3:-17147072 | MS.gene04647:CDS |
| GAACATAACGTATGGCCATT+TGG | 0.409073 | 7.3:+17147303 | None:intergenic |
| TCTTGGGAATATAAGGTGTT+TGG | 0.412899 | 7.3:-17147232 | MS.gene04647:CDS |
| CCACCTGTCACCATGATCTT+GGG | 0.439936 | 7.3:-17147248 | MS.gene04647:CDS |
| CCATACAATTGTCCCTATGC+TGG | 0.460910 | 7.3:-17147093 | MS.gene04647:CDS |
| CTTACAAAATCCACTAGTGT+TGG | 0.467534 | 7.3:-17147780 | MS.gene04647:CDS |
| TACATCAAATTGTTGCAGAC+AGG | 0.476960 | 7.3:+17147699 | None:intergenic |
| AAGCAGTGCACCTGGTGAAT+TGG | 0.478324 | 7.3:+17147672 | None:intergenic |
| CCTTGCAGATATCAGAGTCT+AGG | 0.480797 | 7.3:-17147177 | MS.gene04647:CDS |
| CCAGCATAGGGACAATTGTA+TGG | 0.489704 | 7.3:+17147093 | None:intergenic |
| ATCTTCTTTCCATATACGAC+CGG | 0.495873 | 7.3:+17145844 | None:intergenic |
| TCAGAAATGGCTCCGGGAGG+AGG | 0.504929 | 7.3:-17147891 | None:intergenic |
| TTATATGGCAAGGAATTCCT+AGG | 0.506193 | 7.3:-17145982 | MS.gene04647:CDS |
| TACAATTTGAACATAACGTA+TGG | 0.506717 | 7.3:+17147295 | None:intergenic |
| AAAGTTAGAGATAGTCAAGA+TGG | 0.510900 | 7.3:-17145938 | MS.gene04647:CDS |
| TGACTGTCGCGTATGCTCCT+AGG | 0.511842 | 7.3:+17145965 | None:intergenic |
| ATCTCTTGTTGATCATCTCA+AGG | 0.513200 | 7.3:-17147040 | MS.gene04647:CDS |
| ATCGGATCAGAAATGGCTCC+GGG | 0.513632 | 7.3:-17147897 | None:intergenic |
| CAGTGCACCTGGTGAATTGG+AGG | 0.518998 | 7.3:+17147675 | None:intergenic |
| ACCTTATATTCCCAAGATCA+TGG | 0.520727 | 7.3:+17147238 | None:intergenic |
| GATCGGATCAGAAATGGCTC+CGG | 0.522089 | 7.3:-17147898 | None:intergenic |
| GTTTAAGCTTTGCATAGTAA+GGG | 0.527406 | 7.3:+17147139 | None:intergenic |
| AAACTGGAGCTGTACCAAGC+TGG | 0.527478 | 7.3:+17146092 | None:intergenic |
| CTTAAACATGAGCAAAATTG+TGG | 0.529347 | 7.3:-17147123 | MS.gene04647:CDS |
| TCCATTCAATCCAACACTAG+TGG | 0.529508 | 7.3:+17147770 | None:intergenic |
| TGTGTGTTTCAGTGTCCAAA+TGG | 0.537348 | 7.3:-17147318 | MS.gene04647:intron |
| TTGAGATGATCAACAAGAGA+TGG | 0.537565 | 7.3:+17147042 | None:intergenic |
| TTTGACATATCGATGATTGA+AGG | 0.543895 | 7.3:+17146984 | None:intergenic |
| AATGGTGTGCATGACTTACT+CGG | 0.545764 | 7.3:-17147726 | MS.gene04647:CDS |
| CTTGCAGATATCAGAGTCTA+GGG | 0.551230 | 7.3:-17147176 | MS.gene04647:CDS |
| CACGGAACTAGTTCAAAGAA+TGG | 0.551902 | 7.3:-17147744 | MS.gene04647:CDS |
| GTGTTTGGCTCTGGAGAAAG+TGG | 0.555229 | 7.3:-17147217 | MS.gene04647:CDS |
| AGATGGAATGTCACCCATAA+CGG | 0.557116 | 7.3:+17147059 | None:intergenic |
| ATTCCCAAGATCATGGTGAC+AGG | 0.559471 | 7.3:+17147245 | None:intergenic |
| CCCAAGATCATGGTGACAGG+TGG | 0.563063 | 7.3:+17147248 | None:intergenic |
| GAGTTGAAATTGCGAATCAC+CGG | 0.566590 | 7.3:-17145863 | MS.gene04647:CDS |
| ATCGCCCATAAACCGTAAGA+AGG | 0.570793 | 7.3:+17146063 | None:intergenic |
| ACATCAAATTGTTGCAGACA+GGG | 0.575889 | 7.3:+17147700 | None:intergenic |
| CACAAGGTTGACATGCATGA+TGG | 0.576711 | 7.3:-17147012 | MS.gene04647:CDS |
| TTCAGTTACAGCTTAGAAGT+CGG | 0.578117 | 7.3:-17146022 | MS.gene04647:CDS |
| TCTTTGAAAATACCTCCTCC+CGG | 0.578930 | 7.3:+17147879 | None:intergenic |
| TTTCATAATCTGAAGTCAAG+AGG | 0.592761 | 7.3:+17147841 | None:intergenic |
| GCTTAGAAGTCGGTGCATAT+GGG | 0.598441 | 7.3:-17146012 | MS.gene04647:CDS |
| GAGCACTCAGATCCAGCATA+GGG | 0.606589 | 7.3:+17147081 | None:intergenic |
| GATGTATCCTCCAATTCACC+AGG | 0.614890 | 7.3:-17147682 | MS.gene04647:intron |
| GGGCGCAAACTTATATGGCA+AGG | 0.619069 | 7.3:-17145992 | MS.gene04647:CDS |
| GGAGCACTCAGATCCAGCAT+AGG | 0.620419 | 7.3:+17147080 | None:intergenic |
| CCAAGATCATGGTGACAGGT+GGG | 0.628103 | 7.3:+17147249 | None:intergenic |
| AAGATGGACTAATAATTCAG+AGG | 0.639261 | 7.3:-17145922 | MS.gene04647:CDS |
| TTCAGATTATGAAACAGGCA+AGG | 0.651216 | 7.3:-17147832 | MS.gene04647:CDS |
| GTTGGATTGAATGGAAAGCA+CGG | 0.653878 | 7.3:-17147762 | MS.gene04647:CDS |
| ATGGTGTGCATGACTTACTC+GGG | 0.659438 | 7.3:-17147725 | MS.gene04647:CDS |
| CCTAGACTCTGATATCTGCA+AGG | 0.660946 | 7.3:+17147177 | None:intergenic |
| TCATCTCAAGGATGAACACA+AGG | 0.664179 | 7.3:-17147028 | MS.gene04647:CDS |
| ATGAAGTTGAAAATGCCACA+TGG | 0.708825 | 7.3:-17146951 | MS.gene04647:CDS |
| ACTTACAGTGAGCATCCATG+TGG | 0.726222 | 7.3:+17146936 | None:intergenic |
| GGATCAGAAATGGCTCCGGG+AGG | 0.729551 | 7.3:-17147894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTCAAATATTTATTAGT+TGG | + | chr7.3:17147504-17147523 | None:intergenic | 15.0% |
| !!! | TTAGAAATTTTAAATTTAGC+AGG | + | chr7.3:17146368-17146387 | None:intergenic | 15.0% |
| !! | ATTAAAAAGTAGTGTAATCT+TGG | + | chr7.3:17146979-17146998 | None:intergenic | 20.0% |
| !!! | ACAATATTGGTAACTATTAT+TGG | + | chr7.3:17146340-17146359 | None:intergenic | 20.0% |
| !!! | ATTTAATTTTACGTTCACAA+TGG | - | chr7.3:17146928-17146947 | MS.gene04647:intron | 20.0% |
| !!! | GATAAAAACCTTTAGTTTAT+AGG | - | chr7.3:17146274-17146293 | MS.gene04647:intron | 20.0% |
| !!! | TAATAAAAACTTGCTTCTAT+TGG | - | chr7.3:17146995-17147014 | MS.gene04647:CDS | 20.0% |
| ! | ATAAAACCATGCAACTAAAT+TGG | + | chr7.3:17147218-17147237 | None:intergenic | 25.0% |
| ! | GTGAAATACCTATAAACTAA+AGG | + | chr7.3:17146285-17146304 | None:intergenic | 25.0% |
| ! | TACAAATGTAACAAATCAGA+GGG | - | chr7.3:17147365-17147384 | MS.gene04647:intron | 25.0% |
| ! | TACAATTTGAACATAACGTA+TGG | + | chr7.3:17146434-17146453 | None:intergenic | 25.0% |
| ! | TAGACTAGAAGTTAAAAATG+AGG | + | chr7.3:17147340-17147359 | None:intergenic | 25.0% |
| ! | TCTATATTCAATACTTAGTG+AGG | + | chr7.3:17147128-17147147 | None:intergenic | 25.0% |
| ! | TCTATTGAACAAAACAAGTA+TGG | + | chr7.3:17146954-17146973 | None:intergenic | 25.0% |
| ! | TTACAAATGTAACAAATCAG+AGG | - | chr7.3:17147364-17147383 | MS.gene04647:intron | 25.0% |
| ! | TTAGCAGGATATTACAATAT+TGG | + | chr7.3:17146353-17146372 | None:intergenic | 25.0% |
| ! | TTTATCTGTTTATTATCGCT+TGG | + | chr7.3:17146260-17146279 | None:intergenic | 25.0% |
| !! | AAAGAATTTGAAATGCAAGA+GGG | + | chr7.3:17147558-17147577 | None:intergenic | 25.0% |
| !!! | ATACTTGTTTTGTTCAATAG+AGG | - | chr7.3:17146953-17146972 | MS.gene04647:CDS | 25.0% |
| AAAGTTAGAGATAGTCAAGA+TGG | - | chr7.3:17147788-17147807 | MS.gene04647:CDS | 30.0% | |
| CTCTTGCATTTCAAATTCTT+TGG | - | chr7.3:17147557-17147576 | MS.gene04647:intron | 30.0% | |
| CTTAAACATGAGCAAAATTG+TGG | - | chr7.3:17146603-17146622 | MS.gene04647:intron | 30.0% | |
| GTTTAAGCTTTGCATAGTAA+GGG | + | chr7.3:17146590-17146609 | None:intergenic | 30.0% | |
| TGAATAGCGCATTTGAAAAA+AGG | + | chr7.3:17146126-17146145 | None:intergenic | 30.0% | |
| TGCAGTTGCAGATAATAAAA+AGG | + | chr7.3:17147060-17147079 | None:intergenic | 30.0% | |
| TGTAAGTGAACAGTTAATCT+TGG | + | chr7.3:17145932-17145951 | None:intergenic | 30.0% | |
| TGTTTAAGCTTTGCATAGTA+AGG | + | chr7.3:17146591-17146610 | None:intergenic | 30.0% | |
| TTGACTTCAGATTATGAAAC+AGG | - | chr7.3:17145889-17145908 | MS.gene04647:CDS | 30.0% | |
| TTTGACATATCGATGATTGA+AGG | + | chr7.3:17146745-17146764 | None:intergenic | 30.0% | |
| ! | AAGAATTTGAAATGCAAGAG+GGG | + | chr7.3:17147557-17147576 | None:intergenic | 30.0% |
| ! | AGTCTAAAGCTATGGTATAT+AGG | - | chr7.3:17147282-17147301 | MS.gene04647:CDS | 30.0% |
| ! | ATTTCCTTAGTCTAAAGCTA+TGG | - | chr7.3:17147274-17147293 | MS.gene04647:CDS | 30.0% |
| ! | CAAAGAATTTGAAATGCAAG+AGG | + | chr7.3:17147559-17147578 | None:intergenic | 30.0% |
| ! | TTTCATAATCTGAAGTCAAG+AGG | + | chr7.3:17145888-17145907 | None:intergenic | 30.0% |
| !! | AAGATGGACTAATAATTCAG+AGG | - | chr7.3:17147804-17147823 | MS.gene04647:CDS | 30.0% |
| !! | ATACATAAGTCGCTATTTCT+AGG | - | chr7.3:17147458-17147477 | MS.gene04647:intron | 30.0% |
| !! | TACATAAGTCGCTATTTCTA+GGG | - | chr7.3:17147459-17147478 | MS.gene04647:intron | 30.0% |
| !! | TATACCATAGCTTTAGACTA+AGG | + | chr7.3:17147281-17147300 | None:intergenic | 30.0% |
| !! | TTTCAAATTCTTTGGCTTTC+AGG | - | chr7.3:17147565-17147584 | MS.gene04647:intron | 30.0% |
| !!! | AATCAAGCCCTTTATTTTTC+GGG | - | chr7.3:17147827-17147846 | MS.gene04647:CDS | 30.0% |
| !!! | GAATCAAGCCCTTTATTTTT+CGG | - | chr7.3:17147826-17147845 | MS.gene04647:CDS | 30.0% |
| !!! | TTTCAGGTTTTCAATTGCTA+TGG | - | chr7.3:17147581-17147600 | MS.gene04647:intron | 30.0% |
| AAATGTAACAAATCAGAGGG+AGG | - | chr7.3:17147368-17147387 | MS.gene04647:intron | 35.0% | |
| AATGTTAAACAGTACTGCAG+GGG | + | chr7.3:17147035-17147054 | None:intergenic | 35.0% | |
| ACATCAAATTGTTGCAGACA+GGG | + | chr7.3:17146029-17146048 | None:intergenic | 35.0% | |
| ACCATGATCTTGGGAATATA+AGG | - | chr7.3:17146487-17146506 | MS.gene04647:intron | 35.0% | |
| ACCTTATATTCCCAAGATCA+TGG | + | chr7.3:17146491-17146510 | None:intergenic | 35.0% | |
| ACTCATCCAATTTAGTTGCA+TGG | - | chr7.3:17147209-17147228 | MS.gene04647:CDS | 35.0% | |
| AGAATGTTAAACAGTACTGC+AGG | + | chr7.3:17147037-17147056 | None:intergenic | 35.0% | |
| AGATCACATGACATACACTT+AGG | - | chr7.3:17147145-17147164 | MS.gene04647:CDS | 35.0% | |
| ATCTCTTGTTGATCATCTCA+AGG | - | chr7.3:17146686-17146705 | MS.gene04647:intron | 35.0% | |
| ATCTTCTTTCCATATACGAC+CGG | + | chr7.3:17147885-17147904 | None:intergenic | 35.0% | |
| ATGAAGTTGAAAATGCCACA+TGG | - | chr7.3:17146775-17146794 | MS.gene04647:intron | 35.0% | |
| ATGGTATATAGGTTCTGCTT+TGG | - | chr7.3:17147293-17147312 | MS.gene04647:CDS | 35.0% | |
| CTTACAAAATCCACTAGTGT+TGG | - | chr7.3:17145946-17145965 | MS.gene04647:CDS | 35.0% | |
| GAATGTTAAACAGTACTGCA+GGG | + | chr7.3:17147036-17147055 | None:intergenic | 35.0% | |
| TACATCAAATTGTTGCAGAC+AGG | + | chr7.3:17146030-17146049 | None:intergenic | 35.0% | |
| TCAAGCGTCTATTCATGTTT+CGG | - | chr7.3:17146095-17146114 | MS.gene04647:CDS | 35.0% | |
| TTATATGGCAAGGAATTCCT+AGG | - | chr7.3:17147744-17147763 | MS.gene04647:CDS | 35.0% | |
| TTATTATCTGCAACTGCAAG+TGG | - | chr7.3:17147062-17147081 | MS.gene04647:CDS | 35.0% | |
| TTCAGATTATGAAACAGGCA+AGG | - | chr7.3:17145894-17145913 | MS.gene04647:CDS | 35.0% | |
| TTCAGTTACAGCTTAGAAGT+CGG | - | chr7.3:17147704-17147723 | MS.gene04647:CDS | 35.0% | |
| TTGAGATGATCAACAAGAGA+TGG | + | chr7.3:17146687-17146706 | None:intergenic | 35.0% | |
| ! | CAGTTTTTATGGCCTTCTTA+CGG | - | chr7.3:17147651-17147670 | MS.gene04647:intron | 35.0% |
| ! | TCTTGGGAATATAAGGTGTT+TGG | - | chr7.3:17146494-17146513 | MS.gene04647:intron | 35.0% |
| ! | TGGCATTTTCAACTTCATGT+GGG | + | chr7.3:17146773-17146792 | None:intergenic | 35.0% |
| AATGGTGTGCATGACTTACT+CGG | - | chr7.3:17146000-17146019 | MS.gene04647:CDS | 40.0% | |
| AGACAGTCAGATCAACAAAC+AGG | + | chr7.3:17146826-17146845 | None:intergenic | 40.0% | |
| AGATGGAATGTCACCCATAA+CGG | + | chr7.3:17146670-17146689 | None:intergenic | 40.0% | |
| ATCCCCACCCGAAAAATAAA+GGG | + | chr7.3:17147837-17147856 | None:intergenic | 40.0% | |
| ATGGCCTTCTTACGGTTTAT+GGG | - | chr7.3:17147659-17147678 | MS.gene04647:intron | 40.0% | |
| CAAGCGTCTATTCATGTTTC+GGG | - | chr7.3:17146096-17146115 | MS.gene04647:CDS | 40.0% | |
| CACGGAACTAGTTCAAAGAA+TGG | - | chr7.3:17145982-17146001 | MS.gene04647:CDS | 40.0% | |
| CATATGGGCGCAAACTTATA+TGG | - | chr7.3:17147729-17147748 | MS.gene04647:CDS | 40.0% | |
| CGTAAGAAGGCCATAAAAAC+TGG | + | chr7.3:17147653-17147672 | None:intergenic | 40.0% | |
| CTTGCAGATATCAGAGTCTA+GGG | - | chr7.3:17146550-17146569 | MS.gene04647:intron | 40.0% | |
| GAACATAACGTATGGCCATT+TGG | + | chr7.3:17146426-17146445 | None:intergenic | 40.0% | |
| GAGTTGAAATTGCGAATCAC+CGG | - | chr7.3:17147863-17147882 | MS.gene04647:CDS | 40.0% | |
| GCAAAGTAGCTACAACTTGA+TGG | - | chr7.3:17147395-17147414 | MS.gene04647:intron | 40.0% | |
| GCATTTCTGTTTGCACTTTG+AGG | - | chr7.3:17147607-17147626 | MS.gene04647:intron | 40.0% | |
| GTTGGATTGAATGGAAAGCA+CGG | - | chr7.3:17145964-17145983 | MS.gene04647:CDS | 40.0% | |
| TATCCCCACCCGAAAAATAA+AGG | + | chr7.3:17147838-17147857 | None:intergenic | 40.0% | |
| TATGGCCTTCTTACGGTTTA+TGG | - | chr7.3:17147658-17147677 | MS.gene04647:intron | 40.0% | |
| TCATCTCAAGGATGAACACA+AGG | - | chr7.3:17146698-17146717 | MS.gene04647:intron | 40.0% | |
| TCCATTCAATCCAACACTAG+TGG | + | chr7.3:17145959-17145978 | None:intergenic | 40.0% | |
| TGTGTGTTTCAGTGTCCAAA+TGG | - | chr7.3:17146408-17146427 | MS.gene04647:intron | 40.0% | |
| TTGAAGACGAGAAATCGCAT+TGG | - | chr7.3:17147419-17147438 | MS.gene04647:intron | 40.0% | |
| ! | GAATATAAGGTGTTTGGCTC+TGG | - | chr7.3:17146500-17146519 | MS.gene04647:intron | 40.0% |
| ! | GTGGCATTTTCAACTTCATG+TGG | + | chr7.3:17146774-17146793 | None:intergenic | 40.0% |
| ! | TCCACTAGTGTTGGATTGAA+TGG | - | chr7.3:17145955-17145974 | MS.gene04647:CDS | 40.0% |
| ! | TCTTTGAAAATACCTCCTCC+CGG | + | chr7.3:17145850-17145869 | None:intergenic | 40.0% |
| ! | TGGTACAGCTCCAGTTTTTA+TGG | - | chr7.3:17147640-17147659 | MS.gene04647:intron | 40.0% |
| !!! | AAGCCCTTTATTTTTCGGGT+GGG | - | chr7.3:17147831-17147850 | MS.gene04647:CDS | 40.0% |
| ACTTACAGTGAGCATCCATG+TGG | + | chr7.3:17146793-17146812 | None:intergenic | 45.0% | |
| AGCTTAGAAGTCGGTGCATA+TGG | - | chr7.3:17147713-17147732 | MS.gene04647:CDS | 45.0% | |
| ATCGCCCATAAACCGTAAGA+AGG | + | chr7.3:17147666-17147685 | None:intergenic | 45.0% | |
| ATGGTGTGCATGACTTACTC+GGG | - | chr7.3:17146001-17146020 | MS.gene04647:CDS | 45.0% | |
| ATTCCCAAGATCATGGTGAC+AGG | + | chr7.3:17146484-17146503 | None:intergenic | 45.0% | |
| CACAAGGTTGACATGCATGA+TGG | - | chr7.3:17146714-17146733 | MS.gene04647:intron | 45.0% | |
| CCAGCATAGGGACAATTGTA+TGG | + | chr7.3:17146636-17146655 | None:intergenic | 45.0% | |
| CCATACAATTGTCCCTATGC+TGG | - | chr7.3:17146633-17146652 | MS.gene04647:intron | 45.0% | |
| CCTAGACTCTGATATCTGCA+AGG | + | chr7.3:17146552-17146571 | None:intergenic | 45.0% | |
| CCTTGCAGATATCAGAGTCT+AGG | - | chr7.3:17146549-17146568 | MS.gene04647:intron | 45.0% | |
| GATGTATCCTCCAATTCACC+AGG | - | chr7.3:17146044-17146063 | MS.gene04647:CDS | 45.0% | |
| GCTCACTGTAAGTGACTCAA+TGG | - | chr7.3:17146800-17146819 | MS.gene04647:intron | 45.0% | |
| GCTTAGAAGTCGGTGCATAT+GGG | - | chr7.3:17147714-17147733 | MS.gene04647:CDS | 45.0% | |
| GGAGAAAGTGGCTGAATCTT+TGG | - | chr7.3:17146521-17146540 | MS.gene04647:intron | 45.0% | |
| !!! | AGCCCTTTATTTTTCGGGTG+GGG | - | chr7.3:17147832-17147851 | MS.gene04647:CDS | 45.0% |
| !!! | CAAGCCCTTTATTTTTCGGG+TGG | - | chr7.3:17147830-17147849 | MS.gene04647:CDS | 45.0% |
| !!! | TTTTTCGGGTGGGGATAAAC+AGG | - | chr7.3:17147841-17147860 | MS.gene04647:CDS | 45.0% |
| AAACTGGAGCTGTACCAAGC+TGG | + | chr7.3:17147637-17147656 | None:intergenic | 50.0% | |
| AAGCAGTGCACCTGGTGAAT+TGG | + | chr7.3:17146057-17146076 | None:intergenic | 50.0% | |
| CCAAGATCATGGTGACAGGT+GGG | + | chr7.3:17146480-17146499 | None:intergenic | 50.0% | |
| CCACCTGTCACCATGATCTT+GGG | - | chr7.3:17146478-17146497 | MS.gene04647:intron | 50.0% | |
| GAAATTGCAAGCAGTGCACC+TGG | + | chr7.3:17146065-17146084 | None:intergenic | 50.0% | |
| GACAGGTGGGACAGAGATTA+TGG | + | chr7.3:17146467-17146486 | None:intergenic | 50.0% | |
| GAGCACTCAGATCCAGCATA+GGG | + | chr7.3:17146648-17146667 | None:intergenic | 50.0% | |
| GGATCTGAGTGCTCCGTTAT+GGG | - | chr7.3:17146654-17146673 | MS.gene04647:intron | 50.0% | |
| GGGCGCAAACTTATATGGCA+AGG | - | chr7.3:17147734-17147753 | MS.gene04647:CDS | 50.0% | |
| TCTGCAACTGCAAGTGGTGT+TGG | - | chr7.3:17147068-17147087 | MS.gene04647:CDS | 50.0% | |
| TGCGAATCACCGGTCGTATA+TGG | - | chr7.3:17147873-17147892 | MS.gene04647:CDS | 50.0% | |
| TGGATCTGAGTGCTCCGTTA+TGG | - | chr7.3:17146653-17146672 | MS.gene04647:intron | 50.0% | |
| ! | AAACAGTACTGCAGGGGCAT+TGG | + | chr7.3:17147029-17147048 | None:intergenic | 50.0% |
| !! | CACTTTGAGGCTTTCCAGCT+TGG | - | chr7.3:17147620-17147639 | MS.gene04647:intron | 50.0% |
| !! | GTGTTTGGCTCTGGAGAAAG+TGG | - | chr7.3:17146509-17146528 | MS.gene04647:intron | 50.0% |
| CAGTGCACCTGGTGAATTGG+AGG | + | chr7.3:17146054-17146073 | None:intergenic | 55.0% | |
| CCCAAGATCATGGTGACAGG+TGG | + | chr7.3:17146481-17146500 | None:intergenic | 55.0% | |
| CCCACCTGTCACCATGATCT+TGG | - | chr7.3:17146477-17146496 | MS.gene04647:intron | 55.0% | |
| TGACTGTCGCGTATGCTCCT+AGG | + | chr7.3:17147764-17147783 | None:intergenic | 55.0% | |
| ! | GGAGCACTCAGATCCAGCAT+AGG | + | chr7.3:17146649-17146668 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 17145841 | 17147907 | 17145841 | ID=MS.gene04647 |
| chr7.3 | mRNA | 17145841 | 17147907 | 17145841 | ID=MS.gene04647.t1;Parent=MS.gene04647 |
| chr7.3 | exon | 17147683 | 17147907 | 17147683 | ID=MS.gene04647.t1.exon1;Parent=MS.gene04647.t1 |
| chr7.3 | CDS | 17147683 | 17147907 | 17147683 | ID=cds.MS.gene04647.t1;Parent=MS.gene04647.t1 |
| chr7.3 | exon | 17146942 | 17147328 | 17146942 | ID=MS.gene04647.t1.exon2;Parent=MS.gene04647.t1 |
| chr7.3 | CDS | 17146942 | 17147328 | 17146942 | ID=cds.MS.gene04647.t1;Parent=MS.gene04647.t1 |
| chr7.3 | exon | 17145841 | 17146161 | 17145841 | ID=MS.gene04647.t1.exon3;Parent=MS.gene04647.t1 |
| chr7.3 | CDS | 17145841 | 17146161 | 17145841 | ID=cds.MS.gene04647.t1;Parent=MS.gene04647.t1 |
| Gene Sequence |
| Protein sequence |
