AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39144.t1 MTR_1g054335 99.676 309 1 0 1 309 1 309 0.0 647
MS.gene39144.t1 MTR_7g093600 80.323 310 60 1 1 309 1 310 0.0 530
MS.gene39144.t1 MTR_1g008120 70.447 291 79 1 19 309 36 319 1.53e-155 438
MS.gene39144.t1 MTR_3g091510 74.717 265 67 0 45 309 47 311 2.93e-154 434
MS.gene39144.t1 MTR_3g017590 74.525 263 66 1 47 309 43 304 3.25e-152 429
MS.gene39144.t1 MTR_8g027520 70.803 274 80 0 36 309 31 304 5.82e-152 428
MS.gene39144.t1 MTR_8g027520 70.803 274 80 0 36 309 22 295 7.48e-152 428
MS.gene39144.t1 MTR_7g117415 71.863 263 74 0 47 309 50 312 1.02e-146 415
MS.gene39144.t1 MTR_8g038370 71.206 257 74 0 53 309 107 363 1.20e-145 414
MS.gene39144.t1 MTR_5g076660 26.957 230 152 5 43 266 12 231 1.48e-22 96.3
MS.gene39144.t1 MTR_7g024290 26.667 210 144 4 58 267 11 210 9.27e-20 88.2
MS.gene39144.t1 MTR_4g094468 36.090 133 78 3 57 189 96 221 9.57e-20 88.2
MS.gene39144.t1 MTR_5g067400 26.122 245 162 5 57 301 10 235 2.32e-19 87.0
MS.gene39144.t1 MTR_2g038430 31.783 129 83 2 58 183 25 151 7.79e-19 85.9
MS.gene39144.t1 MTR_5g076540 29.386 228 141 6 58 280 11 223 2.28e-18 83.2
MS.gene39144.t1 MTR_5g061290 25.909 220 150 7 58 276 18 225 3.06e-18 84.0
MS.gene39144.t1 MTR_7g094390 29.940 167 111 3 58 224 172 332 3.00e-17 82.4
MS.gene39144.t1 MTR_5g076370 25.957 235 160 7 71 305 47 267 7.18e-17 80.1
MS.gene39144.t1 MTR_2g038420 25.000 212 147 6 58 267 25 226 2.06e-16 79.0
MS.gene39144.t1 MTR_5g076520 31.579 171 111 3 54 224 7 171 1.16e-15 76.6
MS.gene39144.t1 MTR_1g046650 24.419 258 171 6 57 301 10 256 9.60e-15 73.9
MS.gene39144.t1 MTR_1g046650 24.419 258 171 6 57 301 41 287 1.11e-14 73.9
MS.gene39144.t1 MTR_5g076720 26.122 245 164 6 58 302 82 309 1.16e-14 74.3
MS.gene39144.t1 MTR_5g076820 25.100 251 154 8 58 301 19 242 1.28e-14 73.2
MS.gene39144.t1 MTR_1g046640 25.000 248 168 7 58 305 11 240 8.69e-14 71.2
MS.gene39144.t1 MTR_5g076505 29.060 117 80 2 74 190 23 136 2.59e-11 63.9
MS.gene39144.t1 MTR_1g046650 23.333 240 160 6 75 301 28 256 6.87e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39144.t1 AT3G58040 77.994 309 67 1 1 309 1 308 0.0 507
MS.gene39144.t1 AT3G58040 77.994 309 67 1 1 309 1 308 0.0 507
MS.gene39144.t1 AT2G41980 77.670 309 65 2 1 309 1 305 3.77e-179 497
MS.gene39144.t1 AT4G27880 72.119 269 75 0 41 309 44 312 4.21e-152 429
MS.gene39144.t1 AT3G61790 75.290 259 64 0 51 309 53 311 6.43e-152 429
MS.gene39144.t1 AT5G53360 75.490 204 50 0 106 309 15 218 5.17e-118 339
MS.gene39144.t1 AT5G53360 75.490 204 50 0 106 309 15 218 5.17e-118 339
MS.gene39144.t1 AT3G58040 69.683 221 65 2 1 221 1 219 1.20e-108 315
MS.gene39144.t1 AT3G13672 54.857 175 76 1 138 309 38 212 2.06e-70 218
MS.gene39144.t1 AT3G13672 48.020 202 75 2 138 309 38 239 7.45e-65 204
MS.gene39144.t1 AT5G53360 74.528 106 27 0 204 309 60 165 2.02e-56 181
MS.gene39144.t1 AT5G37870 39.062 128 75 2 57 184 41 165 8.76e-25 101
MS.gene39144.t1 AT5G37930 38.806 134 79 2 57 190 109 239 3.67e-23 98.2
MS.gene39144.t1 AT5G37890 26.721 247 166 6 57 301 47 280 6.34e-21 90.9
MS.gene39144.t1 AT1G66620 41.489 94 55 0 57 150 40 133 3.09e-19 86.7
MS.gene39144.t1 AT5G62800 27.059 255 158 7 57 301 39 275 4.72e-19 86.7
MS.gene39144.t1 AT5G62800 28.037 214 130 5 57 260 39 238 9.71e-19 85.5
MS.gene39144.t1 AT5G37910 36.364 121 75 1 57 177 34 152 1.71e-18 84.0
MS.gene39144.t1 AT1G66650 35.556 135 82 3 57 188 82 214 6.36e-18 83.2
MS.gene39144.t1 AT1G66660 37.500 112 68 1 57 168 102 211 2.65e-17 81.6
MS.gene39144.t1 AT1G66630 36.885 122 73 2 57 176 45 164 1.41e-16 79.0
MS.gene39144.t1 AT1G66610 35.000 100 56 1 43 133 134 233 1.27e-13 69.7
MS.gene39144.t1 AT1G66610 44.444 63 35 0 57 119 52 114 7.33e-11 61.6
MS.gene39144.t1 AT1G66610 44.444 63 35 0 57 119 52 114 2.53e-11 64.3

Find 69 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACATAACGATGGTTAA+AGG 0.268093 1.2:-41580795 None:intergenic
AGAAAGAAGCAAAGAAATTT+AGG 0.283423 1.2:+41581348 MS.gene39144:CDS
CACAAAATCAAGGACTTGTT+TGG 0.286191 1.2:+41578808 MS.gene39144:CDS
CAAATAGCCGCAAACTTATA+TGG 0.307974 1.2:+41581390 MS.gene39144:CDS
CAAGTACGAACCTGATGAAT+TGG 0.312951 1.2:-41578911 None:intergenic
ATGTTCAAATTGTAAGATTA+CGG 0.337638 1.2:+41580493 MS.gene39144:CDS
CACTTTGAGGCGTTTCTACT+TGG 0.338233 1.2:+41581281 MS.gene39144:CDS
CCAACATGTCACCGTGATCT+TGG 0.342485 1.2:+41580530 MS.gene39144:CDS
TACATCAAATTCTTGCAAAC+AGG 0.347642 1.2:-41578884 None:intergenic
TGAGGGTCACTGGTCGTATA+TGG 0.351201 1.2:+41581534 MS.gene39144:CDS
GAATATAAGGTGTTTGGCTT+TGG 0.353568 1.2:+41580553 MS.gene39144:CDS
TCTCAAAATCTGAAAATATC+AGG 0.364559 1.2:-41578745 None:intergenic
GAACATAATGTGTGGCCATT+TGG 0.366483 1.2:-41580476 None:intergenic
CCTTGCAGATATCAGAATCT+AGG 0.378860 1.2:+41580602 MS.gene39144:CDS
TTGGATATTTCAATGGATCT+AGG 0.383601 1.2:+41578689 None:intergenic
AACATAATGTGTGGCCATTT+GGG 0.389709 1.2:-41580475 None:intergenic
TGCTTTAGCTTAGAGTGGTA+TGG 0.391166 1.2:-41580641 None:intergenic
TCTTGGGAATATAAGGTGTT+TGG 0.396349 1.2:+41580547 MS.gene39144:CDS
AAGTACGAACCTGATGAATT+GGG 0.406932 1.2:-41578910 None:intergenic
CAACATGTCACCGTGATCTT+GGG 0.423076 1.2:+41580531 MS.gene39144:CDS
ACTTGTTTGGATGGAAAGAA+TGG 0.430358 1.2:+41578821 MS.gene39144:CDS
CAAGATCACGGTGACATGTT+GGG 0.450043 1.2:-41580529 None:intergenic
ACCGTGATCTTGGGAATATA+AGG 0.454771 1.2:+41580540 MS.gene39144:CDS
CCAGCATAGGGGCAACTGTA+TGG 0.454990 1.2:-41580686 None:intergenic
GGAGAAAGTGGCGGAATCAA+TGG 0.455505 1.2:+41580574 MS.gene39144:CDS
CCATACAGTTGCCCCTATGC+TGG 0.466797 1.2:+41580686 MS.gene39144:CDS
TATTTGTTCCAGTGCCCAAA+TGG 0.471812 1.2:+41580461 MS.gene39144:intron
TTCCTTGCCATATAAGTTTG+CGG 0.472513 1.2:-41581397 None:intergenic
TCTGAATGATGAGTCCATCT+TGG 0.475128 1.2:-41581463 None:intergenic
TGGCACAGCTCCAGTTTACA+TGG 0.477030 1.2:+41581301 MS.gene39144:CDS
TGGTTCAAGAACTTCTTTGA+AGG 0.477924 1.2:-41578720 None:intergenic
TGACTCTCGCGAATGCTCCT+TGG 0.482817 1.2:-41581422 None:intergenic
CAATTAAAGTTGAGGGTCAC+TGG 0.483429 1.2:+41581524 MS.gene39144:CDS
GTGTTTGGCTTTGGAGAAAG+TGG 0.490790 1.2:+41580562 MS.gene39144:CDS
TTTAGGTATAGCTTAGAAGT+TGG 0.491687 1.2:+41581365 MS.gene39144:CDS
GCTTTAGCTTAGAGTGGTAT+GGG 0.501913 1.2:-41580640 None:intergenic
TAATTGTTGTTTATCGCCAC+CGG 0.503340 1.2:-41581507 None:intergenic
TAAACAACAATTAAAGTTGA+GGG 0.518775 1.2:+41581517 MS.gene39144:CDS
GAGCACTCTGATCCAGCATA+GGG 0.522726 1.2:-41580698 None:intergenic
GCTCATGCTTTAGCTTAGAG+TGG 0.522927 1.2:-41580646 None:intergenic
CCAAGATCACGGTGACATGT+TGG 0.534401 1.2:-41580530 None:intergenic
CCTTGTGATCATCCTTGAGA+TGG 0.535656 1.2:-41580751 None:intergenic
ATAGTTCATTCACAAAATCA+AGG 0.536336 1.2:+41578798 MS.gene39144:CDS
TGAACTATTGGAATTAGCCT+CGG 0.540112 1.2:-41578783 None:intergenic
AAATCAAGGACTTGTTTGGA+TGG 0.545636 1.2:+41578812 MS.gene39144:CDS
AAAGTTCGTGACAGCCAAGA+TGG 0.548328 1.2:+41581449 MS.gene39144:CDS
CACAAGGTCGACGTACATGA+TGG 0.550537 1.2:+41580767 MS.gene39144:CDS
AGCCGCAAACTTATATGGCA+AGG 0.559593 1.2:+41581395 MS.gene39144:CDS
ATAAACAACAATTAAAGTTG+AGG 0.561013 1.2:+41581516 MS.gene39144:CDS
CACGGTGACATGTTGGGCAA+CGG 0.570767 1.2:-41580523 None:intergenic
TGCAAACAGGGCACTCAAGT+AGG 0.572689 1.2:-41578871 None:intergenic
AGAGCACTCTGATCCAGCAT+AGG 0.575084 1.2:-41580699 None:intergenic
TACAATTTGAACATAATGTG+TGG 0.595926 1.2:-41580484 None:intergenic
AAATCTGAAAATATCAGGTG+TGG 0.607252 1.2:-41578740 None:intergenic
CCATCTCAAGGATGATCACA+AGG 0.608998 1.2:+41580751 MS.gene39144:CDS
ACATCAAATTCTTGCAAACA+GGG 0.610530 1.2:-41578883 None:intergenic
TTATATGGCAAGGAATTCCA+AGG 0.613859 1.2:+41581405 MS.gene39144:CDS
ACCTTATATTCCCAAGATCA+CGG 0.615283 1.2:-41580541 None:intergenic
AGTACGAACCTGATGAATTG+GGG 0.619005 1.2:-41578909 None:intergenic
CCTAGATTCTGATATCTGCA+AGG 0.629196 1.2:-41580602 None:intergenic
AGCTCTTATGAACCATCTCA+AGG 0.629365 1.2:+41580739 MS.gene39144:CDS
GATATTTCAATGGATCTAGG+AGG 0.648620 1.2:+41578692 None:intergenic
TTTGGCTTTGGAGAAAGTGG+CGG 0.652459 1.2:+41580565 MS.gene39144:CDS
GACAGCTAAGTCTAAATCCG+AGG 0.663173 1.2:+41578766 MS.gene39144:CDS
GTACGAACCTGATGAATTGG+GGG 0.683219 1.2:-41578908 None:intergenic
GATTTGATTTGACATAACGA+TGG 0.690993 1.2:-41580802 None:intergenic
ATGAAGTTGAAAATGCCACA+TGG 0.708825 1.2:+41580828 MS.gene39144:CDS
AGCACTCTGATCCAGCATAG+GGG 0.715799 1.2:-41580697 None:intergenic
ACTTACAGTTAGCATCCATG+TGG 0.763259 1.2:-41580843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTTAATAGACAT+TGG - chr1.2:41579602-41579621 None:intergenic 10.0%
!! ATCTATTAAAATAAGTATTA+GGG - chr1.2:41580390-41580409 None:intergenic 10.0%
!!! ATTTTTTTATGTTTAAATCA+TGG - chr1.2:41579045-41579064 None:intergenic 10.0%
!! AAAAAATTAGCTAACATTTA+AGG - chr1.2:41580299-41580318 None:intergenic 15.0%
!! AAAAATTAGCTAACATTTAA+GGG - chr1.2:41580298-41580317 None:intergenic 15.0%
!! CATCTATTAAAATAAGTATT+AGG - chr1.2:41580391-41580410 None:intergenic 15.0%
!! AACAAATAATTCAGTTATCA+AGG - chr1.2:41580449-41580468 None:intergenic 20.0%
!! AATGGAAATCATTCAAAAAA+TGG + chr1.2:41578839-41578858 MS.gene39144:CDS 20.0%
!! ACTTATTTGAACTTATCTAT+TGG - chr1.2:41579291-41579310 None:intergenic 20.0%
!! AGAAATAATAGTAATTACCT+TGG + chr1.2:41580092-41580111 MS.gene39144:intron 20.0%
!! ATAAACAACAATTAAAGTTG+AGG + chr1.2:41581516-41581535 MS.gene39144:CDS 20.0%
!! ATGTTCAAATTGTAAGATTA+CGG + chr1.2:41580493-41580512 MS.gene39144:CDS 20.0%
!! GAAATAATAGTAATTACCTT+GGG + chr1.2:41580093-41580112 MS.gene39144:intron 20.0%
!! TAAACAACAATTAAAGTTGA+GGG + chr1.2:41581517-41581536 MS.gene39144:CDS 20.0%
!! TGTACTCTATACAAAATTAT+TGG + chr1.2:41581091-41581110 MS.gene39144:intron 20.0%
!!! GCTACATCAATTAATATTTT+TGG + chr1.2:41579691-41579710 MS.gene39144:intron 20.0%
! AAAAAATATATGGTCCTGTT+TGG + chr1.2:41579058-41579077 MS.gene39144:intron 25.0%
! AAAAATATATGGTCCTGTTT+GGG + chr1.2:41579059-41579078 MS.gene39144:intron 25.0%
! AACTGTTTCAAAGTAAATCA+AGG - chr1.2:41581190-41581209 None:intergenic 25.0%
! ACTCTATACAAAATTATTGG+AGG + chr1.2:41581094-41581113 MS.gene39144:intron 25.0%
! ACTGTTTCAAAGTAAATCAA+GGG - chr1.2:41581189-41581208 None:intergenic 25.0%
! AGAAAGAAGCAAAGAAATTT+AGG + chr1.2:41581348-41581367 MS.gene39144:CDS 25.0%
! ATAGTTCATTCACAAAATCA+AGG + chr1.2:41578798-41578817 MS.gene39144:CDS 25.0%
! TACAATTTGAACATAATGTG+TGG - chr1.2:41580487-41580506 None:intergenic 25.0%
! TCTATTTATCTTGAATGAGA+GGG + chr1.2:41579518-41579537 MS.gene39144:intron 25.0%
! TCTCAAAATCTGAAAATATC+AGG - chr1.2:41578748-41578767 None:intergenic 25.0%
! TCTTTGTATAATGTTTGAAG+TGG + chr1.2:41579873-41579892 MS.gene39144:intron 25.0%
! TGTATCAGCAAAATTGTTAT+AGG + chr1.2:41580933-41580952 MS.gene39144:intron 25.0%
! TTAAAGGTTGTAATCATGAT+AGG + chr1.2:41579621-41579640 MS.gene39144:intron 25.0%
! TTAAGTGCTTATCATATAAG+TGG + chr1.2:41579094-41579113 MS.gene39144:intron 25.0%
! TTCTATTTATCTTGAATGAG+AGG + chr1.2:41579517-41579536 MS.gene39144:intron 25.0%
!! AATTTTGCTGATACAAATCT+AGG - chr1.2:41580928-41580947 None:intergenic 25.0%
!! CTTTGTATAATGTTTGAAGT+GGG + chr1.2:41579874-41579893 MS.gene39144:intron 25.0%
!! TGATTTTGTGAATGAACTAT+TGG - chr1.2:41578798-41578817 None:intergenic 25.0%
!! TTTGTATAATGTTTGAAGTG+GGG + chr1.2:41579875-41579894 MS.gene39144:intron 25.0%
!!! TTTACAGATTTGTTAACATC+AGG + chr1.2:41581006-41581025 MS.gene39144:intron 25.0%
!!! TTTTTTACAGATTCAACAGA+TGG + chr1.2:41580868-41580887 MS.gene39144:intron 25.0%
AAATCTGAAAATATCAGGTG+TGG - chr1.2:41578743-41578762 None:intergenic 30.0%
AATTGAAGTCTAATACTCGT+TGG - chr1.2:41579457-41579476 None:intergenic 30.0%
ACATCAAATTCTTGCAAACA+GGG - chr1.2:41578886-41578905 None:intergenic 30.0%
AGTGTAACTAACAAATTCAG+CGG + chr1.2:41579561-41579580 MS.gene39144:intron 30.0%
ATTTCCATGTTCATTCATGT+AGG + chr1.2:41579360-41579379 MS.gene39144:intron 30.0%
GTTCATGACAAATTTCTCAA+AGG - chr1.2:41579653-41579672 None:intergenic 30.0%
TACAGTTCAGCAATTCATTA+GGG - chr1.2:41579485-41579504 None:intergenic 30.0%
TACATCAAATTCTTGCAAAC+AGG - chr1.2:41578887-41578906 None:intergenic 30.0%
TCTAATCTACATATCTTTGC+AGG + chr1.2:41581226-41581245 MS.gene39144:intron 30.0%
TGCTTATCATATAAGTGGTT+AGG + chr1.2:41579099-41579118 MS.gene39144:intron 30.0%
TTACAGTTCAGCAATTCATT+AGG - chr1.2:41579486-41579505 None:intergenic 30.0%
TTTAGGTATAGCTTAGAAGT+TGG + chr1.2:41581365-41581384 MS.gene39144:CDS 30.0%
TTTCCATGTTCATTCATGTA+GGG + chr1.2:41579361-41579380 MS.gene39144:intron 30.0%
TTTGACATAACGATGGTTAA+AGG - chr1.2:41580798-41580817 None:intergenic 30.0%
! ACATTATGAGGCCAAAATTT+TGG + chr1.2:41579939-41579958 MS.gene39144:intron 30.0%
! ATGGCGTTTTTACGATTTTT+GGG + chr1.2:41581320-41581339 MS.gene39144:CDS 30.0%
! CATTATGAGGCCAAAATTTT+GGG + chr1.2:41579940-41579959 MS.gene39144:intron 30.0%
! GTCCTTTCAAATGTTTTCAT+GGG + chr1.2:41580120-41580139 MS.gene39144:intron 30.0%
! TATTATTTCTCATGCTTCCT+AGG - chr1.2:41580082-41580101 None:intergenic 30.0%
! TTGCAGGTTTTCAATTGTTT+TGG + chr1.2:41581242-41581261 MS.gene39144:intron 30.0%
!! AATTTTGGCCTCATAATGTT+TGG - chr1.2:41579938-41579957 None:intergenic 30.0%
!! AGCATGTGTTTTTGTGTATT+TGG + chr1.2:41578988-41579007 MS.gene39144:intron 30.0%
!! ATTTTGGCCTCATAATGTTT+GGG - chr1.2:41579937-41579956 None:intergenic 30.0%
!! GATTTGATTTGACATAACGA+TGG - chr1.2:41580805-41580824 None:intergenic 30.0%
!! GCTACTAAATTTCAAGTTGA+AGG - chr1.2:41578971-41578990 None:intergenic 30.0%
!! TAAGCAATAAAAGTGCTATG+TGG - chr1.2:41579398-41579417 None:intergenic 30.0%
!!! AACCTAGCTCTTTATTTTTC+CGG + chr1.2:41581488-41581507 MS.gene39144:CDS 30.0%
AACATAATGTGTGGCCATTT+GGG - chr1.2:41580478-41580497 None:intergenic 35.0%
AAGTACGAACCTGATGAATT+GGG - chr1.2:41578913-41578932 None:intergenic 35.0%
ACCTTATATTCCCAAGATCA+CGG - chr1.2:41580544-41580563 None:intergenic 35.0%
ACGCACATTTCATTTATTCC+CGG - chr1.2:41579823-41579842 None:intergenic 35.0%
ACTTGTTTGGATGGAAAGAA+TGG + chr1.2:41578821-41578840 MS.gene39144:CDS 35.0%
ATCAAGATGTTTACCCAAAC+AGG - chr1.2:41579075-41579094 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG + chr1.2:41580828-41580847 MS.gene39144:CDS 35.0%
CAAATAGCCGCAAACTTATA+TGG + chr1.2:41581390-41581409 MS.gene39144:CDS 35.0%
GCCTATAAGCATACATAAAG+TGG + chr1.2:41579323-41579342 MS.gene39144:intron 35.0%
TAACAAGCAGATGAGAAGTT+TGG + chr1.2:41579727-41579746 MS.gene39144:intron 35.0%
TAGCAGTATACATCAAGAGA+AGG - chr1.2:41579675-41579694 None:intergenic 35.0%
TGAAAACATTTGAAAGGACC+AGG - chr1.2:41580119-41580138 None:intergenic 35.0%
TGGTTCAAGAACTTCTTTGA+AGG - chr1.2:41578723-41578742 None:intergenic 35.0%
TTAGTTGATCACAGTTCATG+TGG + chr1.2:41580344-41580363 MS.gene39144:intron 35.0%
TTATATGGCAAGGAATTCCA+AGG + chr1.2:41581405-41581424 MS.gene39144:CDS 35.0%
TTCCTTGCCATATAAGTTTG+CGG - chr1.2:41581400-41581419 None:intergenic 35.0%
TTTAATAGACATTGGTCCCA+AGG - chr1.2:41579594-41579613 None:intergenic 35.0%
TTTATCTTGAATGAGAGGGA+TGG + chr1.2:41579522-41579541 MS.gene39144:intron 35.0%
TTTCAGCTGAAAATTCGATC+AGG - chr1.2:41580211-41580230 None:intergenic 35.0%
! AAATCAAGGACTTGTTTGGA+TGG + chr1.2:41578812-41578831 MS.gene39144:CDS 35.0%
! CACAAAATCAAGGACTTGTT+TGG + chr1.2:41578808-41578827 MS.gene39144:CDS 35.0%
! CATGGCGTTTTTACGATTTT+TGG + chr1.2:41581319-41581338 MS.gene39144:CDS 35.0%
! GAATATAAGGTGTTTGGCTT+TGG + chr1.2:41580553-41580572 MS.gene39144:CDS 35.0%
! GCCACTTTATGTATGCTTAT+AGG - chr1.2:41579327-41579346 None:intergenic 35.0%
! GGTCCTTTCAAATGTTTTCA+TGG + chr1.2:41580119-41580138 MS.gene39144:intron 35.0%
! TCGAATTTTCAGCTGAAACT+TGG + chr1.2:41580213-41580232 MS.gene39144:intron 35.0%
! TCTTGGGAATATAAGGTGTT+TGG + chr1.2:41580547-41580566 MS.gene39144:CDS 35.0%
! TGAACTATTGGAATTAGCCT+CGG - chr1.2:41578786-41578805 None:intergenic 35.0%
! TTTCAAATGTTTTCATGGGC+CGG + chr1.2:41580124-41580143 MS.gene39144:intron 35.0%
! TTTTGGCCTCATAATGTTTG+GGG - chr1.2:41579936-41579955 None:intergenic 35.0%
!! TAATTGTTGTTTATCGCCAC+CGG - chr1.2:41581510-41581529 None:intergenic 35.0%
AAAACACCAGGCCTAACATT+TGG + chr1.2:41580179-41580198 MS.gene39144:intron 40.0%
AAGCTATCATCGAGAGCTTA+TGG + chr1.2:41579186-41579205 MS.gene39144:intron 40.0%
AAGTCTAATACTCGTTGGCA+CGG - chr1.2:41579452-41579471 None:intergenic 40.0%
AATAGTAATTACCTTGGGCC+TGG + chr1.2:41580098-41580117 MS.gene39144:intron 40.0%
ACAGCAGACCAGAATATGAT+AGG - chr1.2:41579998-41580017 None:intergenic 40.0%
ACCGTGATCTTGGGAATATA+AGG + chr1.2:41580540-41580559 MS.gene39144:CDS 40.0%
ACTCGGCAATTAGAGCTATT+TGG - chr1.2:41580249-41580268 None:intergenic 40.0%
ACTTACAGTTAGCATCCATG+TGG - chr1.2:41580846-41580865 None:intergenic 40.0%
AGCTCTTATGAACCATCTCA+AGG + chr1.2:41580739-41580758 MS.gene39144:CDS 40.0%
AGTACGAACCTGATGAATTG+GGG - chr1.2:41578912-41578931 None:intergenic 40.0%
ATACGATCACCATCGTTTGT+AGG - chr1.2:41579854-41579873 None:intergenic 40.0%
ATTTCTCATGCTTCCTAGGT+TGG - chr1.2:41580078-41580097 None:intergenic 40.0%
CAAGTACGAACCTGATGAAT+TGG - chr1.2:41578914-41578933 None:intergenic 40.0%
CAATTAAAGTTGAGGGTCAC+TGG + chr1.2:41581524-41581543 MS.gene39144:CDS 40.0%
CACCGGAAAAATAAAGAGCT+AGG - chr1.2:41581493-41581512 None:intergenic 40.0%
CAGCAGACCAGAATATGATA+GGG - chr1.2:41579997-41580016 None:intergenic 40.0%
CCTAGATTCTGATATCTGCA+AGG - chr1.2:41580605-41580624 None:intergenic 40.0%
CCTTGCAGATATCAGAATCT+AGG + chr1.2:41580602-41580621 MS.gene39144:CDS 40.0%
CGTAAAAACGCCATGTAAAC+TGG - chr1.2:41581314-41581333 None:intergenic 40.0%
CTCATTAGCAAGCTTCTGTT+TGG - chr1.2:41580049-41580068 None:intergenic 40.0%
CTCGGCAATTAGAGCTATTT+GGG - chr1.2:41580248-41580267 None:intergenic 40.0%
GAACATAATGTGTGGCCATT+TGG - chr1.2:41580479-41580498 None:intergenic 40.0%
GGCCCATGAAAACATTTGAA+AGG - chr1.2:41580125-41580144 None:intergenic 40.0%
TAATGAGTAGTCTCCAACCT+AGG + chr1.2:41580062-41580081 MS.gene39144:intron 40.0%
TACACTGATCCTACAAACGA+TGG + chr1.2:41579842-41579861 MS.gene39144:intron 40.0%
TAGTAAGACTTAGGCAAAGC+AGG + chr1.2:41579971-41579990 MS.gene39144:intron 40.0%
TATCATATTCTGGTCTGCTG+TGG + chr1.2:41579997-41580016 MS.gene39144:intron 40.0%
TATTTGTTCCAGTGCCCAAA+TGG + chr1.2:41580461-41580480 MS.gene39144:intron 40.0%
TCACCCTACATGAATGAACA+TGG - chr1.2:41579367-41579386 None:intergenic 40.0%
TCAGGATTGAGCCAAATGTT+AGG - chr1.2:41580193-41580212 None:intergenic 40.0%
TCTGAATGATGAGTCCATCT+TGG - chr1.2:41581466-41581485 None:intergenic 40.0%
TTGTGCAGACTTTGTAGTAG+AGG - chr1.2:41579423-41579442 None:intergenic 40.0%
TTTGGCCTCATAATGTTTGG+GGG - chr1.2:41579935-41579954 None:intergenic 40.0%
! GCATTTTTGCTTGCACTTTG+AGG + chr1.2:41581268-41581287 MS.gene39144:CDS 40.0%
! GCTTTAGCTTAGAGTGGTAT+GGG - chr1.2:41580643-41580662 None:intergenic 40.0%
! GTGGCATTTTCAACTTCATG+TGG - chr1.2:41580827-41580846 None:intergenic 40.0%
! TATGACCAGGCCCAAAATTT+TGG - chr1.2:41579953-41579972 None:intergenic 40.0%
! TGCTTTAGCTTAGAGTGGTA+TGG - chr1.2:41580644-41580663 None:intergenic 40.0%
!! AGGGATGGATTGAGAAATGT+AGG + chr1.2:41579537-41579556 MS.gene39144:intron 40.0%
!! GGGATGGATTGAGAAATGTA+GGG + chr1.2:41579538-41579557 MS.gene39144:intron 40.0%
!!! CTAGCTCTTTATTTTTCCGG+TGG + chr1.2:41581491-41581510 MS.gene39144:CDS 40.0%
AAAGTTCGTGACAGCCAAGA+TGG + chr1.2:41581449-41581468 MS.gene39144:CDS 45.0%
AAGCAGGCCCTATCATATTC+TGG + chr1.2:41579987-41580006 MS.gene39144:intron 45.0%
AATTCAGCGGCTTCAATCCT+TGG + chr1.2:41579574-41579593 MS.gene39144:intron 45.0%
AGCCGCAAACTTATATGGCA+AGG + chr1.2:41581395-41581414 MS.gene39144:CDS 45.0%
AGTCTAATACTCGTTGGCAC+GGG - chr1.2:41579451-41579470 None:intergenic 45.0%
ATGCACATCCTGTGAACGAA+AGG + chr1.2:41579797-41579816 MS.gene39144:intron 45.0%
ATTCAGCGGCTTCAATCCTT+GGG + chr1.2:41579575-41579594 MS.gene39144:intron 45.0%
ATTGAGCCAAATGTTAGGCC+TGG - chr1.2:41580188-41580207 None:intergenic 45.0%
CAACATGTCACCGTGATCTT+GGG + chr1.2:41580531-41580550 MS.gene39144:CDS 45.0%
CAAGATCACGGTGACATGTT+GGG - chr1.2:41580532-41580551 None:intergenic 45.0%
CCATCTCAAGGATGATCACA+AGG + chr1.2:41580751-41580770 MS.gene39144:CDS 45.0%
CCTTGTGATCATCCTTGAGA+TGG - chr1.2:41580754-41580773 None:intergenic 45.0%
GACAGCTAAGTCTAAATCCG+AGG + chr1.2:41578766-41578785 MS.gene39144:CDS 45.0%
GATGTATCCCCCAATTCATC+AGG + chr1.2:41578901-41578920 MS.gene39144:CDS 45.0%
GCAATTAGAGCTATTTGGGC+AGG - chr1.2:41580244-41580263 None:intergenic 45.0%
GCCTAAGTCTTACTATGACC+AGG - chr1.2:41579966-41579985 None:intergenic 45.0%
GCCTGGTCATAGTAAGACTT+AGG + chr1.2:41579962-41579981 MS.gene39144:intron 45.0%
GTACGAACCTGATGAATTGG+GGG - chr1.2:41578911-41578930 None:intergenic 45.0%
TAGAGCTATTTGGGCAGGTA+AGG - chr1.2:41580239-41580258 None:intergenic 45.0%
! AAATGTTTTCATGGGCCGGA+TGG + chr1.2:41580128-41580147 MS.gene39144:intron 45.0%
! AATGTTTGAAGTGGGGCTCA+TGG + chr1.2:41579882-41579901 MS.gene39144:intron 45.0%
! ATGTTTGAAGTGGGGCTCAT+GGG + chr1.2:41579883-41579902 MS.gene39144:intron 45.0%
! CTCATGGGTTGTGCTTTAAC+TGG + chr1.2:41579898-41579917 MS.gene39144:intron 45.0%
! GCTCATGCTTTAGCTTAGAG+TGG - chr1.2:41580649-41580668 None:intergenic 45.0%
! TGTTAGGCCTGGTGTTTTTC+AGG - chr1.2:41580177-41580196 None:intergenic 45.0%
!! CACTTTGAGGCGTTTCTACT+TGG + chr1.2:41581281-41581300 MS.gene39144:CDS 45.0%
!! GTGTTTGGCTTTGGAGAAAG+TGG + chr1.2:41580562-41580581 MS.gene39144:CDS 45.0%
!! TTTGGCTTTGGAGAAAGTGG+CGG + chr1.2:41580565-41580584 MS.gene39144:CDS 45.0%
!!! GGTTTTCGTTGGCCTTTGTT+GGG + chr1.2:41580018-41580037 MS.gene39144:intron 45.0%
!!! GTGTTTTTCAGGCTGGGATT+GGG - chr1.2:41580166-41580185 None:intergenic 45.0%
!!! TGGTTTTCGTTGGCCTTTGT+TGG + chr1.2:41580017-41580036 MS.gene39144:intron 45.0%
!!! TGTTTTTCAGGCTGGGATTG+GGG - chr1.2:41580165-41580184 None:intergenic 45.0%
!! TTTAAACATAAAAAAATATA+TGG + chr1.2:41579048-41579067 MS.gene39144:intron 5.0%
!!! TCTATTAAATTTATTTTTAA+AGG + chr1.2:41579605-41579624 MS.gene39144:intron 5.0%
ACATCCTGTGAACGAAAGGC+CGG + chr1.2:41579801-41579820 MS.gene39144:intron 50.0%
AGCACTCTGATCCAGCATAG+GGG - chr1.2:41580700-41580719 None:intergenic 50.0%
ATCCCAGCCTGAAAAACACC+AGG + chr1.2:41580167-41580186 MS.gene39144:intron 50.0%
ATTTGAAAGGACCAGGCCCA+AGG - chr1.2:41580112-41580131 None:intergenic 50.0%
CACAAGGTCGACGTACATGA+TGG + chr1.2:41580767-41580786 MS.gene39144:CDS 50.0%
CCAACATGTCACCGTGATCT+TGG + chr1.2:41580530-41580549 MS.gene39144:CDS 50.0%
CCAAGATCACGGTGACATGT+TGG - chr1.2:41580533-41580552 None:intergenic 50.0%
CCCTGACGGTCACAAAAACT+CGG - chr1.2:41580266-41580285 None:intergenic 50.0%
CCTCATAATGTTTGGGGGCT+GGG - chr1.2:41579930-41579949 None:intergenic 50.0%
GAGCACTCTGATCCAGCATA+GGG - chr1.2:41580701-41580720 None:intergenic 50.0%
GTCTAATACTCGTTGGCACG+GGG - chr1.2:41579450-41579469 None:intergenic 50.0%
TGAGGGTCACTGGTCGTATA+TGG + chr1.2:41581534-41581553 MS.gene39144:CDS 50.0%
TGGCACAGCTCCAGTTTACA+TGG + chr1.2:41581301-41581320 MS.gene39144:CDS 50.0%
! AAGCACCTGTGTCGCTGTTT+CGG - chr1.2:41579265-41579284 None:intergenic 50.0%
! AGAGCACTCTGATCCAGCAT+AGG - chr1.2:41580702-41580721 None:intergenic 50.0%
! CCGAGTTTTTGTGACCGTCA+GGG + chr1.2:41580263-41580282 MS.gene39144:intron 50.0%
! GGAGAAAGTGGCGGAATCAA+TGG + chr1.2:41580574-41580593 MS.gene39144:CDS 50.0%
! TGAGGCCAAAATTTTGGGCC+TGG + chr1.2:41579945-41579964 MS.gene39144:intron 50.0%
! TGCAAACAGGGCACTCAAGT+AGG - chr1.2:41578874-41578893 None:intergenic 50.0%
! TGGTCTGCTGTGGTTTTCGT+TGG + chr1.2:41580007-41580026 MS.gene39144:intron 50.0%
!! TTCGTTGGCCTTTGTTGGGT+GGG + chr1.2:41580022-41580041 MS.gene39144:intron 50.0%
!! TTTCGTTGGCCTTTGTTGGG+TGG + chr1.2:41580021-41580040 MS.gene39144:intron 50.0%
!!! GGTGTTTTTCAGGCTGGGAT+TGG - chr1.2:41580167-41580186 None:intergenic 50.0%
AAGGGAGCTCATGACCCTGA+CGG - chr1.2:41580280-41580299 None:intergenic 55.0%
AATGTTTGGGGGCTGGGATC+AGG - chr1.2:41579924-41579943 None:intergenic 55.0%
ATGTGTGGCCATTTGGGCAC+TGG - chr1.2:41580472-41580491 None:intergenic 55.0%
ATTCCCGGCCTTTCGTTCAC+AGG - chr1.2:41579808-41579827 None:intergenic 55.0%
CACGGTGACATGTTGGGCAA+CGG - chr1.2:41580526-41580545 None:intergenic 55.0%
CATCCTGTGAACGAAAGGCC+GGG + chr1.2:41579802-41579821 MS.gene39144:intron 55.0%
CCAGCATAGGGGCAACTGTA+TGG - chr1.2:41580689-41580708 None:intergenic 55.0%
CCATACAGTTGCCCCTATGC+TGG + chr1.2:41580686-41580705 MS.gene39144:CDS 55.0%
CCCAGCCCCCAAACATTATG+AGG + chr1.2:41579927-41579946 MS.gene39144:intron 55.0%
GCCTCATAATGTTTGGGGGC+TGG - chr1.2:41579931-41579950 None:intergenic 55.0%
TGACTCTCGCGAATGCTCCT+TGG - chr1.2:41581425-41581444 None:intergenic 55.0%
TGTTTGGCCCCACCCAACAA+AGG - chr1.2:41580033-41580052 None:intergenic 55.0%
! GCCGAGTTTTTGTGACCGTC+AGG + chr1.2:41580262-41580281 MS.gene39144:intron 55.0%
!! TCGTTGGCCTTTGTTGGGTG+GGG + chr1.2:41580023-41580042 MS.gene39144:intron 55.0%
!!! AGGCCTGGTGTTTTTCAGGC+TGG - chr1.2:41580173-41580192 None:intergenic 55.0%
!!! GGCCTGGTGTTTTTCAGGCT+GGG - chr1.2:41580172-41580191 None:intergenic 55.0%
GCTCTCCGAAACAGCGACAC+AGG + chr1.2:41579257-41579276 MS.gene39144:intron 60.0%
GGGGCAGCAATGAGACCATC+CGG - chr1.2:41580146-41580165 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 41578701 41581568 41578701 ID=MS.gene39144
chr1.2 mRNA 41578701 41581568 41578701 ID=MS.gene39144.t1;Parent=MS.gene39144
chr1.2 exon 41578701 41578922 41578701 ID=MS.gene39144.t1.exon1;Parent=MS.gene39144.t1
chr1.2 CDS 41578701 41578922 41578701 ID=cds.MS.gene39144.t1;Parent=MS.gene39144.t1
chr1.2 exon 41580473 41580859 41580473 ID=MS.gene39144.t1.exon2;Parent=MS.gene39144.t1
chr1.2 CDS 41580473 41580859 41580473 ID=cds.MS.gene39144.t1;Parent=MS.gene39144.t1
chr1.2 exon 41581248 41581568 41581248 ID=MS.gene39144.t1.exon3;Parent=MS.gene39144.t1
chr1.2 CDS 41581248 41581568 41581248 ID=cds.MS.gene39144.t1;Parent=MS.gene39144.t1
Gene Sequence

>MS.gene39144

ATGGATCTAGGAGGCAGTTCCTTCAAAGAAGTTCTTGAACCACACCTGATATTTTCAGATTTTGAGACAGCTAAGTCTAAATCCGAGGCTAATTCCAATAGTTCATTCACAAAATCAAGGACTTGTTTGGATGGAAAGAATGGAAATCATTCAAAAAATGGTGTGTATGACCTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGGTTCGTACTTGTAATTTCGTTTCAATTTGAAATTCACTTTTATTTCCTTCAACTTGAAATTTAGTAGCATGTGTTTTTGTGTATTTGGTAGCACATTCAAAAAGCTTATATTTTATACTCCATGATTTAAACATAAAAAAATATATGGTCCTGTTTGGGTAAACATCTTGATTAAGTGCTTATCATATAAGTGGTTAGGTAATGTATAAACTATTTCTATTTCAAAAGATAAAACAAAGTCGTACGATTTTCATGTAAGTTATAAGCTATCATCGAGAGCTTATGGAAATAAGCTGAAAACAACATACAACTATGTCATGATTTGTTTTCAAAAGCTCTCCGAAACAGCGACACAGGTGCTTACACCAATAGATAAGTTCAAATAAGTCAATCTAAGCACGCCTATAAGCATACATAAAGTGGCACTGATAATCTCTATTTCCATGTTCATTCATGTAGGGTGATTTCTTTTCCACATAGCACTTTTATTGCTTATTCCTCTACTACAAAGTCTGCACAATTCACCCCGTGCCAACGAGTATTAGACTTCAATTCTATACCCTAATGAATTGCTGAACTGTAAATAAATAGCTTTTCTATTTATCTTGAATGAGAGGGATGGATTGAGAAATGTAGGGAGTGTAACTAACAAATTCAGCGGCTTCAATCCTTGGGACCAATGTCTATTAAATTTATTTTTAAAGGTTGTAATCATGATAGGTTTTTTCCTTTGAGAAATTTGTCATGAACCTTCTCTTGATGTATACTGCTACATCAATTAATATTTTTGGTTATATCAAGCAATAACAAGCAGATGAGAAGTTTGGTATATAATTTGTCGATATTTTTCTAATGTAATTTTCACTATGATATCATGCACATCCTGTGAACGAAAGGCCGGGAATAAATGAAATGTGCGTACACTGATCCTACAAACGATGGTGATCGTATCTTTGTATAATGTTTGAAGTGGGGCTCATGGGTTGTGCTTTAACTGGCCTGATCCCAGCCCCCAAACATTATGAGGCCAAAATTTTGGGCCTGGTCATAGTAAGACTTAGGCAAAGCAGGCCCTATCATATTCTGGTCTGCTGTGGTTTTCGTTGGCCTTTGTTGGGTGGGGCCAAACAGAAGCTTGCTAATGAGTAGTCTCCAACCTAGGAAGCATGAGAAATAATAGTAATTACCTTGGGCCTGGTCCTTTCAAATGTTTTCATGGGCCGGATGGTCTCATTGCTGCCCCAATCCCAGCCTGAAAAACACCAGGCCTAACATTTGGCTCAATCCTGATCGAATTTTCAGCTGAAACTTGGCCTTACCTGCCCAAATAGCTCTAATTGCCGAGTTTTTGTGACCGTCAGGGTCATGAGCTCCCTTAAATGTTAGCTAATTTTTTGTGTACTGTCTGTATAACTATTTAGTTAGTTGATCACAGTTCATGTGGTTATTTTCATTTAAGTGAATCCCTAATACTTATTTTAATAGATGTTCATTTCTGATATTCGTCTAAATTTAATGTTTTTCCTTGATAACTGAATTATTTGTTCCAGTGCCCAAATGGCCACACATTATGTTCAAATTGTAAGATTACGGTGCATAACCGTTGCCCAACATGTCACCGTGATCTTGGGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCGGAATCAATGGAGCTTCCTTGCAGATATCAGAATCTAGGTTGTCATGATATATTCCCATACCACTCTAAGCTAAAGCATGAGCAAAATTGTCGATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGCTCTATGATGTGTGATATTCAAGCTCTTATGAACCATCTCAAGGATGATCACAAGGTCGACGTACATGATGGATTCACCTTTAACCATCGTTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTAAGTTGTTTTTTACAGATTCAACAGATGGTTTATTTTACTCTATAACTTGATGTATCATTTCTCCTAGATTTGTATCAGCAAAATTGTTATAGGCTTACTTTTTGAAATGTAACATTTTCATATCATTTTTTGAAGAGTCTGTATTTACAGATTTGTTAACATCAGGTTTCAAACTTAGCATAGTTACACATCTAATAACTTTATATGAATCTAGTTGATTTGTTAAATTGTACTCTATACAAAATTATTGGAGGTGTGACTATGCTAAGTTTATGATTAATCTATTAAAAATGATTTCAATTGCAGAGTGTAATGTTTTCTCTCCCTTGATTTACTTTGAAACAGTTGAAAACATGTCATCATTCTAATCTACATATCTTTGCAGGTTTTCAATTGTTTTGGAAAGCATTTTTGCTTGCACTTTGAGGCGTTTCTACTTGGCACAGCTCCAGTTTACATGGCGTTTTTACGATTTTTGGGTGATGAGAAAGAAGCAAAGAAATTTAGGTATAGCTTAGAAGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGCGAGAGTCATAGAAAAGTTCGTGACAGCCAAGATGGACTCATCATTCAGAGAAACCTAGCTCTTTATTTTTCCGGTGGCGATAAACAACAATTAAAGTTGAGGGTCACTGGTCGTATATGGAAAGAAGAATGA
Protein sequence

>MS.gene39144.t1

MDLGGSSFKEVLEPHLIFSDFETAKSKSEANSNSSFTKSRTCLDGKNGNHSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKITVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFPYHSKLKHEQNCRFRPYSCPYAGSECSMMCDIQALMNHLKDDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTAPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKQQLKLRVTGRIWKEE