AlfalfaGEDB | MS.gene90302

M. sativa cultivar XinJiangDaYe / MS.gene90302

KEGG: K10403
GO: GO:0000166 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008144 GO:0008150 GO:0009987 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00225.26 PF12836.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90302.t1	XP_003623088.2	93.6	637	30	1	1	626	1	637	0.00E+00	1163.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90302.t1	Q5E913	56.1	633	239	11	8	618	4	619	2.3e-172	607.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90302.t1	G7L4H2	93.6	637	30	1	1	626	1	637	0.0e+00	1163.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049989	MS.gene90302	0.80606	9.88E-50	-1.69E-46
MS.gene051339	MS.gene90302	0.802457	5.56E-49	-1.69E-46
MS.gene051742	MS.gene90302	0.802292	6.01E-49	-1.69E-46
MS.gene051816	MS.gene90302	0.816692	4.85E-52	-1.69E-46
MS.gene051896	MS.gene90302	0.816321	5.87E-52	-1.69E-46
MS.gene051914	MS.gene90302	0.851196	1.04E-60	-1.69E-46
MS.gene051955	MS.gene90302	0.86152	9.68E-64	-1.69E-46
MS.gene052308	MS.gene90302	0.881942	1.58E-70	-1.69E-46
MS.gene052367	MS.gene90302	0.84292	1.93E-58	-1.69E-46
MS.gene053173	MS.gene90302	0.847225	1.32E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005189	MS.gene90302	PPI
MS.gene018013	MS.gene90302	PPI
MS.gene44056	MS.gene90302	PPI
MS.gene50517	MS.gene90302	PPI
MS.gene90302	MS.gene91547	PPI
MS.gene90302	MS.gene39144	PPI
MS.gene90302	MS.gene04647	PPI
MS.gene90302	MS.gene034570	PPI
MS.gene90302	MS.gene055974	PPI
MS.gene90302	MS.gene52683	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90302.t1	MTR_7g061020	93.564	637	30	1	1	626	1	637	0.0	1229
MS.gene90302.t1	MTR_6g053680	37.659	393	224	9	25	412	5	381	4.86e-68	238
MS.gene90302.t1	MTR_6g053680	39.837	123	65	4	500	618	783	900	3.83e-17	85.9
MS.gene90302.t1	MTR_3g100270	33.075	387	205	9	19	369	3	371	2.12e-53	197
MS.gene90302.t1	MTR_1g067630	33.711	353	201	8	26	353	55	399	4.01e-52	194
MS.gene90302.t1	MTR_3g102170	34.048	373	185	13	26	353	9	365	4.12e-51	191
MS.gene90302.t1	MTR_5g066320	33.515	367	194	9	19	353	11	359	6.56e-51	191
MS.gene90302.t1	MTR_1g059730	32.964	361	197	8	26	353	14	362	1.69e-50	189
MS.gene90302.t1	MTR_7g105030	33.053	357	202	8	26	353	10	358	2.83e-50	188
MS.gene90302.t1	MTR_7g105030	33.053	357	202	8	26	353	10	358	2.83e-50	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90302.t1	AT5G02370	54.922	579	220	12	8	563	4	564	0.0	565
MS.gene90302.t1	AT5G23910	35.833	360	201	11	64	417	44	379	1.14e-57	206
MS.gene90302.t1	AT5G23910	52.381	84	40	0	534	617	622	705	3.73e-19	92.4
MS.gene90302.t1	AT5G23910	35.833	360	201	11	64	417	40	375	1.25e-57	206
MS.gene90302.t1	AT5G23910	52.381	84	40	0	534	617	618	701	3.87e-19	92.0
MS.gene90302.t1	AT3G50240	34.383	381	186	11	26	360	26	388	4.82e-52	193
MS.gene90302.t1	AT3G50240	34.383	381	186	11	26	360	26	388	6.25e-52	193
MS.gene90302.t1	AT3G50240	34.383	381	186	11	26	360	26	388	7.32e-52	193
MS.gene90302.t1	AT5G60930	33.423	371	189	9	26	353	7	362	9.42e-52	193
MS.gene90302.t1	AT5G60930	33.423	371	189	9	26	353	7	362	1.10e-51	193

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Find 149 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAACCTCATAGACT+TGG	0.619189	7.4:+42793377	MS.gene90302:CDS
AAAAGTGAGATACAAGAAAC+TGG	0.328169	7.4:-42791745	None:intergenic
AAACCCTTTCTTAGTGGAGC+AGG	0.438676	7.4:-42795321	None:intergenic
AAAGCTTGGCTAGAATCAAG+AGG	0.648838	7.4:+42794244	MS.gene90302:CDS
AAAGTGAGATACAAGAAACT+GGG	0.651165	7.4:-42791744	None:intergenic
AAATGGGGTTGTTGTTGATG+GGG	0.475568	7.4:-42791648	None:intergenic
AAGAAAGGGTTTCAGGAAAA+TGG	0.319274	7.4:+42795332	MS.gene90302:CDS
AAGATGGCCATATTCACCTC+AGG	0.507995	7.4:+42793175	MS.gene90302:CDS
AAGCTCAACATACTACTGAG+AGG	0.692590	7.4:+42794408	MS.gene90302:CDS
AATAGAAGGAGCTGCAATGA+AGG	0.472976	7.4:+42793495	MS.gene90302:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGAGATACAAGAAAC+TGG	-	chr7.4:42791748-42791767	None:intergenic	30.0%
AAAGTGAGATACAAGAAACT+GGG	-	chr7.4:42791747-42791766	None:intergenic	30.0%
AATGATTTCTCAGACCAAAA+TGG	-	chr7.4:42795740-42795759	None:intergenic	30.0%
AATTCTCTTGGTCATTCTAA+TGG	-	chr7.4:42793812-42793831	None:intergenic	30.0%
ACTAGTTATGACATGAGTAA+TGG	-	chr7.4:42794018-42794037	None:intergenic	30.0%
AGAAGAAAGTCCACTAAAAT+CGG	+	chr7.4:42796106-42796125	MS.gene90302:CDS	30.0%
AGAGAGATTTAGCAGTAAAA+CGG	+	chr7.4:42792476-42792495	MS.gene90302:intron	30.0%
AGCTCAAATTTCATACTATG+AGG	+	chr7.4:42793086-42793105	MS.gene90302:CDS	30.0%
ATAGGTTGTACAAACTCTAA+TGG	+	chr7.4:42792626-42792645	MS.gene90302:intron	30.0%
ATCCTATACTAGCAAAAAAG+AGG	+	chr7.4:42792848-42792867	MS.gene90302:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	42791607	42796429	42791607	ID=MS.gene90302
chr7.4	mRNA	42791607	42796429	42791607	ID=MS.gene90302.t1;Parent=MS.gene90302
chr7.4	exon	42791607	42791827	42791607	ID=MS.gene90302.t1.exon1;Parent=MS.gene90302.t1
chr7.4	CDS	42791607	42791827	42791607	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42791928	42792096	42791928	ID=MS.gene90302.t1.exon2;Parent=MS.gene90302.t1
chr7.4	CDS	42791928	42792096	42791928	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42793009	42793402	42793009	ID=MS.gene90302.t1.exon3;Parent=MS.gene90302.t1
chr7.4	CDS	42793009	42793402	42793009	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42793484	42793689	42793484	ID=MS.gene90302.t1.exon4;Parent=MS.gene90302.t1
chr7.4	CDS	42793484	42793689	42793484	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42794112	42794265	42794112	ID=MS.gene90302.t1.exon5;Parent=MS.gene90302.t1
chr7.4	CDS	42794112	42794265	42794112	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42794297	42794429	42794297	ID=MS.gene90302.t1.exon6;Parent=MS.gene90302.t1
chr7.4	CDS	42794297	42794429	42794297	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42794523	42794586	42794523	ID=MS.gene90302.t1.exon7;Parent=MS.gene90302.t1
chr7.4	CDS	42794523	42794586	42794523	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42794784	42794874	42794784	ID=MS.gene90302.t1.exon8;Parent=MS.gene90302.t1
chr7.4	CDS	42794784	42794874	42794784	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42795189	42795397	42795189	ID=MS.gene90302.t1.exon9;Parent=MS.gene90302.t1
chr7.4	CDS	42795189	42795397	42795189	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42795483	42795529	42795483	ID=MS.gene90302.t1.exon10;Parent=MS.gene90302.t1
chr7.4	CDS	42795483	42795529	42795483	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42795628	42795649	42795628	ID=MS.gene90302.t1.exon11;Parent=MS.gene90302.t1
chr7.4	CDS	42795628	42795649	42795628	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42796065	42796127	42796065	ID=MS.gene90302.t1.exon12;Parent=MS.gene90302.t1
chr7.4	CDS	42796065	42796127	42796065	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42796218	42796256	42796218	ID=MS.gene90302.t1.exon13;Parent=MS.gene90302.t1
chr7.4	CDS	42796218	42796256	42796218	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1
chr7.4	exon	42796358	42796429	42796358	ID=MS.gene90302.t1.exon14;Parent=MS.gene90302.t1
chr7.4	CDS	42796358	42796429	42796358	ID=cds.MS.gene90302.t1;Parent=MS.gene90302.t1

Gene Sequence

>MS.gene90302

ATGGCTACTACTCTTAATTACTCATGCACCCCACCAAAAACCCCCATCAACAACAACCCCATTTCAGTTTCCAAGGTAAGGGTCATTGTTAGGGTTAGACCCTTCCTTCCTCACGAAACCACAAGAAATGGCGATGACCCAGTTTCTTGTATCTCACTTTTAGATCAAGATTTTCAATCCCAAAATGATGTAGCAGTTTATCTCAAAGACCCATTTACCAGGTTTCAAAAAAATTCAATTTTTTTAGAAAAAGTTCACTTTTTTATTAGTAGAGTGTTTGAATTTTGGTTTTTGATTTTGTTTCGTTGTTTGATTTTTCAGTCGGAACGAGTGTTACAAGTTGGATTCGTTCTTTGATCAAGAGGATAACAATGTGGGACAGATATTTGAGAGAGAAGTTAGTCCGATGATACCGGCTGTATTCGGTGGATGTAATGCTACTGTGTTTGCTTATGGTGCTACTGGAAGTGGAAAGACATATACTATGCAGGTGAGAGTGTGATCTATATGTGTGAATTAGTTTAATTTTGTTGTGAATATGTCAATTTTGTTTATTTGTTTTTGGTATATGCAGGTGAGAGAGTGTGATCTATGTGTATGTTAATTAGTTTAATTTTGTTGTGAAATGTCAATTTTTGATGTTTTTGGTAATGTTTTTATGAGTTAGCTCGTAGAAATTAACAATTATGTGATGTGATTATGTGAGGGATCAGAAAAGTGAATGAACCCGCCTTTGGTTAGATTTATTGAATTTTTAGTATTTGGTTGTAAATGTAAGTTTGAGTTCAGAGAGTGGCGAGGAGTAGTACTCTTTTTCATGTTTAACAATGACATAGGTTATGTTATACTTTTCTGAATAATGTACCTTAAGAGAGATTTAGCAGTAAAACGGCCCATTTTTGTAGTTAGTATATGTTATATGATGGTGAATTATGTCATCATTCATAAATTGAACCTTATCTAGTGCAATAATGTATCGATCCTTTGGCTACGCACAATTTGGCTCAGCTCAGATCGTTATAGGTTGTACAAACTCTAATGGTATTAATGCCAATGATAAATGAAGAGAGAATTTCTAGCAATTTTGGTGGAAGGAGGAGTACTTTATCTACTATATTTCTCTTTTTCTATTGCAATGATTTTATCTTAAGGTGCTGGAACAGCTTCATTAGATGGTGTAAATGGTGTTTTGTCTTCTCCCTAGAGTTTTTCTCGCTTCCTACTGAGACTTTGTATTATTTATCCTATACTAGCAAAAAAGAGGATTCAAAATAACTGATCCACTTTTGATTCTTGAAATTGGTAGTGCCAGCCAGGTTGTTTTATGTACCTGTTTAATTTTTTAGCAGTTTCTTACTTTTTTGTGTTGTGTAGTTGAAATAACCGATTCTTGGTGATGCAGGGAACTGAAGGACAACCTGGCTTGATGCCGTTGGCAATGTCCACTATCCTGTCTATTTGTCAAAACACCGGTAGCACAGCTCAAATTTCATACTATGAGGTCTACATGGACCGATGTTACGACCTCTTAGAGTTAAAAGCAAGTGAGATTTCAGTTTTGGATGACAAAGATGGCCATATTCACCTCAGGGGACTATCTCAAGTTCCTGTAAATACAATGTCTGAATTTCAAGAGGTCTTCTCCAGTGGTATTCAGAGGCGCAAAACTGCACACACAGGCCTCAATGACGTATCAAGCAGGAGTCATGGAGTGCTTGTGATATCTGTACTATCGACTCCTCCTGATGGGAATGGAAGTCTTGTATGTGGAAAACTGAACCTCATAGACTTGGCAGGTTACCGTCCACTCAATTGGGGTAATGGGTTTGATGTATTCCAAGCAACGGAAGGACATAATGCGTTTAAAGTTGATGCAGGTAATGAAGACAATAGAAGGAGCTGCAATGAAGGGATTCGTCTTCAAGAGAGTGCTAAGATAAATCAGTCCTTGTTTGCACTGTCAAATGTGATATATGCGTTGAACAACAACAAACCAAGAACACCCTATAGGGACAGCAAATTGACCCGTATATTGCAGGACTCTCTAGGGGGATCTAGTCGTGCCCTCATGGTTGCTTGCCTGGTAAAGCTATAAGTTTTATAGTTTTTTTCCTCTCATTTAATAATGGTTCATTGGATTTGATATGCATGACAAGAAAGAGCTTGAGGGGGTGATATATAAGTTGTAGGTTACTTGTTCAACCATTAGAATGACCAAGAGAATTGCATCTTAGCTTAATTCCCCTATTAATTCTGATTAGTGTCGAGATTTCTGTTATTCCACCCGCATTAGACTAGACATTGGAAACGTCAACAACTGTGGATAGAATAACAAATATCTAGGTTTGATACCAGATCTAATATATACTCTGATTATTTAAAAGGCAAGAACTGCTTAAACTATATAACCATTACTCATGTCATAACTAGTCGATATGCAACTCTAAAAATTAGATATTCAGTGTTTAATTATAGCACATTATAGCCCTTTATGTGTGATTTCAGAATCCAGGAGAATATCAGGAATCTGTTCATACTGTTAGTTTGGCTGCTCGATCAAGGCACGTTTCTAATTTTGTACCTTCAGCTCATAAACTAGAGACACCAAAAGGTAACGTTGACATGGAAGCCAAATTGAAAGCTTGGCTAGAATCAAGAGGTAAGACAGAGCTCACAACAAAGACTTGGAGCATTTAATTCTCCAGTTGTGCAAAAAACTCCCGGTTCCACCATTAGCTCTGCTAGGAGATCAGTTACTTTCAATAGCTCAGTGAAGGGTGGCAGAACTTTCATCAACCAAAAAGCTCAACATACTACTGAGAGGTAAGTATGGTCTGATCATTGAAAAGGAGATTATAGAGTATGATTTTCTCATTGATTTTCTGTTAGTGATATTTTCTCTTACTGTGTAAGCAGGGCCTTTGGTGTCTCTTTTAGAAATTTACTAGATGGTGAAGTTGCTTCTGATTCTAGCAAAAAGGTGAGTGAGTGTCACAAGTGAAAGACACGTACTGAAAATTTCACTAATTACAAGTACTATGCCACTAATATTGAAAAAGACAGGCATTATCAAAAGTACAAGGAACTGTTCTTGTCTTGATGAATATTAAATTTTCATGCATTGTAAATATTTGCATTTTTCTTGACTATAATAATATTTAATTTAATGCTATGTAGAACATGCATTCTGGTGTTGAGGACAATGATAAGAGAGAGACTGAACATGAGGCCAATAAAGCAGCACTAGAATCATATAATGATGTACCTGGTATGTCATTACTTGTGTGATCCCTGCACTCTGCATTTATTCGATATTATAATGAAATATGGACTATGTACTTATATCGTAAATGCATTCACCGTTGTTGGCCAACCAGAACAGTTGGATAAATACTAAACGGTTCATATGTAATGAGCTTAAAATATGAATTGTTTGATCTTCATCCAACAGTTTCGATTTACTGACTGCGGTGAATGTGTGGTACTATGATCCGAACTGTGGTCACATACATTGATTAATACTTGGTAGAGTCTAATATAACTATGCTTTCTAAAGCTTGAAGCACATGCTTTTGTATGCAGATGAACCCTTAAGCAAAGATGTACCAGCAGTACTACAAAGTCCATTAAGAAAAGCTCTCTCTCCCCTCAACATCAATGGTATTCAAAACCATCTTCAGACTATGTCTTTGACACGGACACCTTTTTCTGCAACCTGCTCCACTAAGAAAGGGTTTCAGGAAAATGGCACTCCACTGGACAAATTCAGTGCAAGAAGTTCTGCTTTGAAGGTACAGCCAGTTGTTTTAACTTCACTAACAAAATGAAATTTGTGAATCTCCTTTCTCACATAATCTATTTTTTTTTAATGTGTAGAATTGTCTAGTTCAAGAATACATTGATTTGTTAAATAATGCAAGCAGGTAAATAACATTCTCCATTGTATTTTGCATAATTTCTAAAGCATATTCAGTGAACCTTCTTTCAAGGTGCCTTAACACTGTTTAATTTTTAAATGCAGAGAGGAGCTACTAGAGTTAAAGGTACATGCACGGTTGCTTGCCACATGAATCTCCAGTTTGAATAGTCTCTATCTGACAGTTTTTCATTATTGCACTGTTCTTTAGGGTCCATTTTGGTCTGAGAAATCATTTTCTGTTTTAACTTTTTTGTTTTTTTACTTTTGATTACAAAACAACCACGTGCATGTTTGGATTGACGATGAGATTGGAAGAATCACGGCGAACCACTTTAATTTTAGCAAAAACTACACTTTAAAGCTGCAACAAAATCACAATGTTGCCAAACTCACTGCTCATCCAAACATGCATCACATTATTTTCACTTTGTTTCTTGTTTTCAAATATCTCATGTGCAAATATTTGAAAATAAGAAACAAAGTGTCATGATTTTTCTTCGTTTTCTAATACTTGGGATTCAATCATTGTATTCCTTCAGGGCATAGGAGACAAAATGGCAGATTACATTATAGACCTCAGAGAAGAAAGTCCACTAAAATCGGTTAGTATAAATATAATTCATAACTTGCAACACAGATACGATTAGTTCCTCATAATGCTTTTGGTAATGCAATTTTTCGGCATGTTGCAGTTAACTGACCTGGAGAAGATTGGTCTCTCTATGAAGCAGGTATATTACTATATATATAACCATAATGAAATTTTAGTTGAAAATCTAGTTTAATTCTAAAAATGTGAACAAAATTCTAACTTGTACTACTTGTTTGGCAGGCTCATAACCTTTTCACTAAAGCTGCAAAAAAACTCTTTGATGACAAAGCAGAAGATTCAATACTCAATTGA

Protein sequence

>MS.gene90302.t1

MATTLNYSCTPPKTPINNNPISVSKVRVIVRVRPFLPHETTRNGDDPVSCISLLDQDFQSQNDVAVYLKDPFTSRNECYKLDSFFDQEDNNVGQIFEREVSPMIPAVFGGCNATVFAYGATGSGKTYTMQGTEGQPGLMPLAMSTILSICQNTGSTAQISYYEVYMDRCYDLLELKASEISVLDDKDGHIHLRGLSQVPVNTMSEFQEVFSSGIQRRKTAHTGLNDVSSRSHGVLVISVLSTPPDGNGSLVCGKLNLIDLAGNEDNRRSCNEGIRLQESAKINQSLFALSNVIYALNNNKPRTPYRDSKLTRILQDSLGGSSRALMVACLNPGEYQESVHTVSLAARSRHVSNFVPSAHKLETPKGNVDMEAKLKAWLESRAFNSPVVQKTPGSTISSARRSVTFNSSVKGGRTFINQKAQHTTERAFGVSFRNLLDGEVASDSSKKNMHSGVEDNDKRETEHEANKAALESYNDVPDEPLSKDVPAVLQSPLRKALSPLNINGIQNHLQTMSLTRTPFSATCSTKKGFQENGTPLDKFSARSSALKNCLVQEYIDLLNNASREELLELKGIGDKMADYIIDLREESPLKSLTDLEKIGLSMKQAHNLFTKAAKKLFDDKAEDSILN