Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055974.t1 | XP_003625295.1 | 97.1 | 310 | 9 | 0 | 1 | 310 | 1 | 310 | 2.80E-183 | 651 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055974.t1 | Q9M2P4 | 78.1 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 3.7e-147 | 522.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055974.t1 | G7KWA3 | 97.1 | 310 | 9 | 0 | 1 | 310 | 1 | 310 | 2.0e-183 | 651.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36292 | MS.gene055974 | PPI |
| MS.gene04647 | MS.gene055974 | PPI |
| MS.gene055974 | MS.gene89107 | PPI |
| MS.gene055974 | MS.gene52683 | PPI |
| MS.gene055974 | MS.gene61205 | PPI |
| MS.gene98989 | MS.gene055974 | PPI |
| MS.gene96493 | MS.gene055974 | PPI |
| MS.gene018013 | MS.gene055974 | PPI |
| MS.gene055308 | MS.gene055974 | PPI |
| MS.gene39144 | MS.gene055974 | PPI |
| MS.gene90302 | MS.gene055974 | PPI |
| MS.gene64538 | MS.gene055974 | PPI |
| MS.gene055974 | MS.gene91723 | PPI |
| MS.gene055974 | MS.gene04647 | PPI |
| MS.gene034570 | MS.gene055974 | PPI |
| MS.gene50517 | MS.gene055974 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055974.t1 | MTR_7g093600 | 97.097 | 310 | 9 | 0 | 1 | 310 | 1 | 310 | 0.0 | 633 |
| MS.gene055974.t1 | MTR_1g054335 | 79.677 | 310 | 62 | 1 | 1 | 310 | 1 | 309 | 0.0 | 527 |
| MS.gene055974.t1 | MTR_3g091510 | 72.302 | 278 | 72 | 1 | 37 | 309 | 33 | 310 | 9.54e-155 | 436 |
| MS.gene055974.t1 | MTR_1g008120 | 74.532 | 267 | 68 | 0 | 43 | 309 | 52 | 318 | 1.86e-154 | 435 |
| MS.gene055974.t1 | MTR_3g017590 | 73.704 | 270 | 67 | 1 | 40 | 309 | 38 | 303 | 9.11e-154 | 432 |
| MS.gene055974.t1 | MTR_8g027520 | 71.898 | 274 | 76 | 1 | 36 | 309 | 22 | 294 | 4.18e-153 | 431 |
| MS.gene055974.t1 | MTR_8g027520 | 71.898 | 274 | 76 | 1 | 36 | 309 | 31 | 303 | 6.01e-153 | 431 |
| MS.gene055974.t1 | MTR_7g117415 | 73.432 | 271 | 69 | 1 | 39 | 309 | 44 | 311 | 3.90e-151 | 427 |
| MS.gene055974.t1 | MTR_8g038370 | 69.286 | 280 | 78 | 2 | 38 | 309 | 83 | 362 | 2.09e-147 | 419 |
| MS.gene055974.t1 | MTR_5g076660 | 25.912 | 274 | 189 | 6 | 33 | 306 | 7 | 266 | 3.01e-22 | 95.5 |
| MS.gene055974.t1 | MTR_4g094468 | 28.505 | 214 | 140 | 5 | 58 | 270 | 96 | 297 | 7.68e-22 | 94.0 |
| MS.gene055974.t1 | MTR_7g024290 | 26.316 | 209 | 144 | 4 | 59 | 267 | 11 | 209 | 1.72e-19 | 87.4 |
| MS.gene055974.t1 | MTR_2g038430 | 32.558 | 129 | 82 | 2 | 59 | 184 | 25 | 151 | 3.92e-19 | 86.7 |
| MS.gene055974.t1 | MTR_5g067400 | 24.903 | 257 | 170 | 6 | 58 | 310 | 10 | 247 | 1.31e-18 | 85.1 |
| MS.gene055974.t1 | MTR_5g061290 | 30.303 | 132 | 86 | 4 | 59 | 189 | 18 | 144 | 1.62e-17 | 82.0 |
| MS.gene055974.t1 | MTR_5g076540 | 28.972 | 214 | 132 | 6 | 59 | 267 | 11 | 209 | 3.16e-17 | 79.7 |
| MS.gene055974.t1 | MTR_5g076370 | 25.424 | 236 | 162 | 6 | 72 | 307 | 47 | 268 | 7.57e-17 | 80.1 |
| MS.gene055974.t1 | MTR_7g094390 | 28.743 | 167 | 113 | 3 | 59 | 225 | 172 | 332 | 1.16e-16 | 80.5 |
| MS.gene055974.t1 | MTR_5g076520 | 28.638 | 213 | 142 | 4 | 55 | 267 | 7 | 209 | 1.39e-16 | 79.3 |
| MS.gene055974.t1 | MTR_2g038420 | 28.244 | 131 | 91 | 2 | 59 | 189 | 25 | 152 | 3.03e-15 | 75.5 |
| MS.gene055974.t1 | MTR_5g076720 | 25.954 | 262 | 174 | 7 | 8 | 267 | 37 | 280 | 1.12e-14 | 74.3 |
| MS.gene055974.t1 | MTR_5g076820 | 25.100 | 251 | 154 | 8 | 59 | 302 | 19 | 242 | 1.22e-14 | 73.2 |
| MS.gene055974.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 10 | 234 | 7.27e-14 | 71.2 |
| MS.gene055974.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 41 | 265 | 8.67e-14 | 71.2 |
| MS.gene055974.t1 | MTR_1g046640 | 25.820 | 244 | 161 | 7 | 59 | 302 | 11 | 234 | 1.17e-13 | 70.9 |
| MS.gene055974.t1 | MTR_5g076505 | 27.815 | 151 | 103 | 3 | 75 | 225 | 23 | 167 | 2.54e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055974.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 511 |
| MS.gene055974.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 511 |
| MS.gene055974.t1 | AT2G41980 | 76.129 | 310 | 69 | 1 | 1 | 310 | 1 | 305 | 1.65e-180 | 500 |
| MS.gene055974.t1 | AT3G61790 | 75.969 | 258 | 62 | 0 | 52 | 309 | 53 | 310 | 1.31e-154 | 436 |
| MS.gene055974.t1 | AT4G27880 | 72.348 | 264 | 73 | 0 | 46 | 309 | 48 | 311 | 5.66e-151 | 426 |
| MS.gene055974.t1 | AT5G53360 | 75.369 | 203 | 50 | 0 | 107 | 309 | 15 | 217 | 1.19e-118 | 341 |
| MS.gene055974.t1 | AT5G53360 | 75.369 | 203 | 50 | 0 | 107 | 309 | 15 | 217 | 1.19e-118 | 341 |
| MS.gene055974.t1 | AT3G58040 | 74.146 | 205 | 51 | 2 | 1 | 205 | 1 | 203 | 1.14e-108 | 315 |
| MS.gene055974.t1 | AT3G13672 | 50.495 | 202 | 94 | 2 | 111 | 309 | 13 | 211 | 1.24e-70 | 218 |
| MS.gene055974.t1 | AT3G13672 | 44.978 | 229 | 93 | 3 | 111 | 309 | 13 | 238 | 6.13e-65 | 204 |
| MS.gene055974.t1 | AT5G53360 | 74.286 | 105 | 27 | 0 | 205 | 309 | 60 | 164 | 1.70e-56 | 181 |
| MS.gene055974.t1 | AT5G37870 | 38.281 | 128 | 76 | 2 | 58 | 185 | 41 | 165 | 5.54e-23 | 96.7 |
| MS.gene055974.t1 | AT5G37930 | 38.462 | 130 | 77 | 2 | 58 | 187 | 109 | 235 | 9.59e-22 | 94.4 |
| MS.gene055974.t1 | AT5G37890 | 26.316 | 247 | 167 | 6 | 58 | 302 | 47 | 280 | 6.03e-20 | 88.2 |
| MS.gene055974.t1 | AT5G37910 | 25.692 | 253 | 177 | 6 | 58 | 309 | 34 | 276 | 3.48e-18 | 83.2 |
| MS.gene055974.t1 | AT5G62800 | 26.953 | 256 | 157 | 8 | 58 | 302 | 39 | 275 | 2.69e-17 | 81.6 |
| MS.gene055974.t1 | AT1G66620 | 30.968 | 155 | 102 | 2 | 23 | 174 | 2 | 154 | 3.25e-17 | 80.9 |
| MS.gene055974.t1 | AT5G62800 | 27.103 | 214 | 132 | 5 | 58 | 261 | 39 | 238 | 1.51e-16 | 79.0 |
| MS.gene055974.t1 | AT1G66650 | 33.333 | 135 | 85 | 3 | 58 | 189 | 82 | 214 | 7.62e-16 | 77.4 |
| MS.gene055974.t1 | AT1G66630 | 36.885 | 122 | 73 | 2 | 58 | 177 | 45 | 164 | 2.17e-15 | 75.5 |
| MS.gene055974.t1 | AT1G66660 | 35.714 | 112 | 70 | 1 | 58 | 169 | 102 | 211 | 5.88e-15 | 74.7 |
| MS.gene055974.t1 | AT1G66610 | 32.773 | 119 | 76 | 2 | 7 | 121 | 102 | 220 | 3.15e-13 | 68.6 |
Find 72 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCCTTCTTACGGTTTA+TGG | 0.117780 | 7.4:-15372521 | MS.gene055974:CDS |
| TGAGAATCACCGGTCGTATA+TGG | 0.277771 | 7.4:-15372306 | MS.gene055974:CDS |
| GGAGAAAGTGGCGGAATCTT+TGG | 0.289986 | 7.4:-15373658 | MS.gene055974:CDS |
| GACAGGTGGGACAGAGATTA+TGG | 0.312010 | 7.4:+15373715 | None:intergenic |
| AGCTTAGAAGTCGGTGCATA+TGG | 0.322324 | 7.4:-15372466 | MS.gene055974:CDS |
| ATGGCCTTCTTACGGTTTAT+GGG | 0.324454 | 7.4:-15372520 | MS.gene055974:CDS |
| CCCACCTGTCACCATGATCT+TGG | 0.343411 | 7.4:-15373702 | MS.gene055974:CDS |
| GCATTTCTGTTTGCACTTTG+AGG | 0.351473 | 7.4:-15372572 | MS.gene055974:CDS |
| TGTTTAAGCTTTGCATAGTA+AGG | 0.352415 | 7.4:+15373591 | None:intergenic |
| ACCATGATCTTGGGAATATA+AGG | 0.354435 | 7.4:-15373692 | MS.gene055974:CDS |
| CACTTTGAGGCTTTCCAGCT+TGG | 0.356658 | 7.4:-15372559 | MS.gene055974:CDS |
| TCCACTAGTGTTGGATTGAA+TGG | 0.361198 | 7.4:-15374191 | MS.gene055974:CDS |
| GAATATAAGGTGTTTGGCTC+TGG | 0.367722 | 7.4:-15373679 | MS.gene055974:CDS |
| TTGACTTCAGATTATGAAAC+AGG | 0.369439 | 7.4:-15374257 | MS.gene055974:CDS |
| TGTAAGTGTACAGTTAATCT+TGG | 0.383421 | 7.4:+15374217 | None:intergenic |
| GAACATAACGTATGGCCATT+TGG | 0.409073 | 7.4:+15373756 | None:intergenic |
| TCTTGGGAATATAAGGTGTT+TGG | 0.412899 | 7.4:-15373685 | MS.gene055974:CDS |
| CATATGGGCGCAAACTTGTA+TGG | 0.435777 | 7.4:-15372450 | MS.gene055974:CDS |
| CCACCTGTCACCATGATCTT+GGG | 0.439936 | 7.4:-15373701 | MS.gene055974:CDS |
| CCATACAATTGTCCCTATGC+TGG | 0.460910 | 7.4:-15373546 | MS.gene055974:CDS |
| AAGCAGTGCACCTGGTGAAT+TGG | 0.478324 | 7.4:+15374092 | None:intergenic |
| CCTTGCAGATATCAGAGTCT+AGG | 0.480797 | 7.4:-15373630 | MS.gene055974:CDS |
| CCAGCATAGGGACAATTGTA+TGG | 0.489704 | 7.4:+15373546 | None:intergenic |
| GGATCTGAGTGCTCCGTGAT+GGG | 0.492368 | 7.4:-15373525 | MS.gene055974:CDS |
| ATCTTCTTTCCATATACGAC+CGG | 0.495873 | 7.4:+15372297 | None:intergenic |
| CTTACAAAATCCACTAGTGT+TGG | 0.503995 | 7.4:-15374200 | MS.gene055974:CDS |
| TGGATCTGAGTGCTCCGTGA+TGG | 0.504556 | 7.4:-15373526 | MS.gene055974:CDS |
| TCAGAAATGGCTCCGGGAGG+AGG | 0.504929 | 7.4:-15374311 | None:intergenic |
| TACAATTTGAACATAACGTA+TGG | 0.506717 | 7.4:+15373748 | None:intergenic |
| AAAGTTAGAGATAGTCAAGA+TGG | 0.510900 | 7.4:-15372391 | MS.gene055974:CDS |
| TGACTGTCGCGTATGCTCCT+AGG | 0.511842 | 7.4:+15372418 | None:intergenic |
| ATCTCTTGTTGATCATCTCA+AGG | 0.513200 | 7.4:-15373493 | MS.gene055974:CDS |
| ATCGGATCAGAAATGGCTCC+GGG | 0.513632 | 7.4:-15374317 | None:intergenic |
| CAGTGCACCTGGTGAATTGG+AGG | 0.518998 | 7.4:+15374095 | None:intergenic |
| ACCTTATATTCCCAAGATCA+TGG | 0.520727 | 7.4:+15373691 | None:intergenic |
| GATCGGATCAGAAATGGCTC+CGG | 0.522089 | 7.4:-15374318 | None:intergenic |
| GTTTAAGCTTTGCATAGTAA+GGG | 0.527406 | 7.4:+15373592 | None:intergenic |
| AAACTGGAGCTGTACCAAGC+TGG | 0.527478 | 7.4:+15372545 | None:intergenic |
| TCCATTCAATCCAACACTAG+TGG | 0.529508 | 7.4:+15374190 | None:intergenic |
| TTGTATGGCAAGGAATTCCT+AGG | 0.536368 | 7.4:-15372435 | MS.gene055974:CDS |
| TGTGTGTTTCAGTGTCCAAA+TGG | 0.537348 | 7.4:-15373771 | MS.gene055974:intron |
| TTGAGATGATCAACAAGAGA+TGG | 0.537565 | 7.4:+15373495 | None:intergenic |
| GTGTTTGGCTCTGGAGAAAG+TGG | 0.543736 | 7.4:-15373670 | MS.gene055974:CDS |
| TTTGACATATCGATGATTGA+AGG | 0.543895 | 7.4:+15373437 | None:intergenic |
| AATGGTGTGCATGACTTACT+CGG | 0.545764 | 7.4:-15374146 | MS.gene055974:CDS |
| CTTGCAGATATCAGAGTCTA+GGG | 0.551230 | 7.4:-15373629 | MS.gene055974:CDS |
| CACGGAACTAGTTCAAAGAA+TGG | 0.551902 | 7.4:-15374164 | MS.gene055974:CDS |
| ATTCCCAAGATCATGGTGAC+AGG | 0.559471 | 7.4:+15373698 | None:intergenic |
| CCCAAGATCATGGTGACAGG+TGG | 0.563063 | 7.4:+15373701 | None:intergenic |
| ATCGCCCATAAACCGTAAGA+AGG | 0.570793 | 7.4:+15372516 | None:intergenic |
| CACAAGGTTGACATGCATGA+TGG | 0.576711 | 7.4:-15373465 | MS.gene055974:CDS |
| TTCAGTTACAGCTTAGAAGT+CGG | 0.578117 | 7.4:-15372475 | MS.gene055974:CDS |
| TCTTTGAAAATACCTCCTCC+CGG | 0.578930 | 7.4:+15374299 | None:intergenic |
| GAGTTGAAATTGAGAATCAC+CGG | 0.584234 | 7.4:-15372316 | MS.gene055974:CDS |
| TTTCATAATCTGAAGTCAAG+AGG | 0.592761 | 7.4:+15374261 | None:intergenic |
| GCTTAGAAGTCGGTGCATAT+GGG | 0.598441 | 7.4:-15372465 | MS.gene055974:CDS |
| GAGCACTCAGATCCAGCATA+GGG | 0.606589 | 7.4:+15373534 | None:intergenic |
| GGGCGCAAACTTGTATGGCA+AGG | 0.611852 | 7.4:-15372445 | MS.gene055974:CDS |
| GATGTATCCTCCAATTCACC+AGG | 0.614890 | 7.4:-15374102 | MS.gene055974:intron |
| GGAGCACTCAGATCCAGCAT+AGG | 0.620419 | 7.4:+15373533 | None:intergenic |
| CCAAGATCATGGTGACAGGT+GGG | 0.628103 | 7.4:+15373702 | None:intergenic |
| AGATGGAATGTCGCCCATCA+CGG | 0.630084 | 7.4:+15373512 | None:intergenic |
| AAGATGGACTAATAATTCAG+AGG | 0.639261 | 7.4:-15372375 | MS.gene055974:CDS |
| TTCAGATTATGAAACAGGCA+AGG | 0.651216 | 7.4:-15374252 | MS.gene055974:CDS |
| GTTGGATTGAATGGAAAGCA+CGG | 0.653878 | 7.4:-15374182 | MS.gene055974:CDS |
| ATGGTGTGCATGACTTACTC+GGG | 0.659438 | 7.4:-15374145 | MS.gene055974:CDS |
| CCTAGACTCTGATATCTGCA+AGG | 0.660946 | 7.4:+15373630 | None:intergenic |
| TCATCTCAAGGATGAACACA+AGG | 0.664179 | 7.4:-15373481 | MS.gene055974:CDS |
| TTTGGCTCTGGAGAAAGTGG+CGG | 0.674324 | 7.4:-15373667 | MS.gene055974:CDS |
| ATGAAGTTGAAAATGCCACA+TGG | 0.708825 | 7.4:-15373404 | MS.gene055974:CDS |
| ACTTACAGTGAGCATCCATG+TGG | 0.726222 | 7.4:+15373389 | None:intergenic |
| GGATCAGAAATGGCTCCGGG+AGG | 0.729551 | 7.4:-15374314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTCAAATATTTATTAGT+TGG | + | chr7.4:15373924-15373943 | None:intergenic | 15.0% |
| !!! | ATTAAAAAGTATTGTAATCT+TGG | + | chr7.4:15373399-15373418 | None:intergenic | 15.0% |
| !!! | ATTTAATTTTACGTTCACAA+TGG | - | chr7.4:15373348-15373367 | MS.gene055974:intron | 20.0% |
| !!! | GAAATATTGGTAACTATTAT+TGG | + | chr7.4:15372794-15372813 | None:intergenic | 20.0% |
| !!! | GATAAAAACCTTTAGTTTAT+AGG | - | chr7.4:15372728-15372747 | MS.gene055974:intron | 20.0% |
| !!! | TAATAAAAACTTGCTTCTAT+TGG | - | chr7.4:15373415-15373434 | MS.gene055974:CDS | 20.0% |
| ! | ATAAAACCATGCAACTAAAT+TGG | + | chr7.4:15373638-15373657 | None:intergenic | 25.0% |
| ! | GTGAAATACCTATAAACTAA+AGG | + | chr7.4:15372739-15372758 | None:intergenic | 25.0% |
| ! | TACAAATGTAACAAATCAGA+GGG | - | chr7.4:15373785-15373804 | MS.gene055974:intron | 25.0% |
| ! | TACAATTTGAACATAACGTA+TGG | + | chr7.4:15372854-15372873 | None:intergenic | 25.0% |
| ! | TAGACTAGAAGTTAAAAATG+AGG | + | chr7.4:15373760-15373779 | None:intergenic | 25.0% |
| ! | TCTATATTCAATACTTAGTG+AGG | + | chr7.4:15373548-15373567 | None:intergenic | 25.0% |
| ! | TCTATTGAACAAAACAAGTA+TGG | + | chr7.4:15373374-15373393 | None:intergenic | 25.0% |
| ! | TGCATACAAAACAGAAATAT+TGG | + | chr7.4:15372807-15372826 | None:intergenic | 25.0% |
| ! | TTACAAATGTAACAAATCAG+AGG | - | chr7.4:15373784-15373803 | MS.gene055974:intron | 25.0% |
| ! | TTTATCTGTTTATTATCGCT+TGG | + | chr7.4:15372714-15372733 | None:intergenic | 25.0% |
| !! | AAAGAATTTGAAATGCAAGA+GGG | + | chr7.4:15373978-15373997 | None:intergenic | 25.0% |
| !! | ATACATAAGTCACTATTTCT+AGG | - | chr7.4:15373878-15373897 | MS.gene055974:intron | 25.0% |
| !!! | ATACTTGTTTTGTTCAATAG+AGG | - | chr7.4:15373373-15373392 | MS.gene055974:intron | 25.0% |
| !!! | TACATAAGTCACTATTTCTA+GGG | - | chr7.4:15373879-15373898 | MS.gene055974:intron | 25.0% |
| AAAGTTAGAGATAGTCAAGA+TGG | - | chr7.4:15374208-15374227 | MS.gene055974:CDS | 30.0% | |
| CTCTTGCATTTCAAATTCTT+TGG | - | chr7.4:15373977-15373996 | MS.gene055974:intron | 30.0% | |
| GTTTAAGCTTTGCATAGTAA+GGG | + | chr7.4:15373010-15373029 | None:intergenic | 30.0% | |
| TGCAGTTGCAGATAATAAAA+AGG | + | chr7.4:15373480-15373499 | None:intergenic | 30.0% | |
| TGTAAGTGTACAGTTAATCT+TGG | + | chr7.4:15372385-15372404 | None:intergenic | 30.0% | |
| TGTTTAAGCTTTGCATAGTA+AGG | + | chr7.4:15373011-15373030 | None:intergenic | 30.0% | |
| TTGACTTCAGATTATGAAAC+AGG | - | chr7.4:15372342-15372361 | MS.gene055974:CDS | 30.0% | |
| TTTGACATATCGATGATTGA+AGG | + | chr7.4:15373165-15373184 | None:intergenic | 30.0% | |
| ! | AAGAATTTGAAATGCAAGAG+GGG | + | chr7.4:15373977-15373996 | None:intergenic | 30.0% |
| ! | AGTCTAAAGCTATGGTATAT+AGG | - | chr7.4:15373702-15373721 | MS.gene055974:CDS | 30.0% |
| ! | ATGGTATATAGGTTCTGTTT+TGG | - | chr7.4:15373713-15373732 | MS.gene055974:CDS | 30.0% |
| ! | ATTTCCTTAGTCTAAAGCTA+TGG | - | chr7.4:15373694-15373713 | MS.gene055974:CDS | 30.0% |
| ! | CAAAGAATTTGAAATGCAAG+AGG | + | chr7.4:15373979-15373998 | None:intergenic | 30.0% |
| ! | TTTCATAATCTGAAGTCAAG+AGG | + | chr7.4:15372341-15372360 | None:intergenic | 30.0% |
| !! | AAGATGGACTAATAATTCAG+AGG | - | chr7.4:15374224-15374243 | MS.gene055974:CDS | 30.0% |
| !! | TATACCATAGCTTTAGACTA+AGG | + | chr7.4:15373701-15373720 | None:intergenic | 30.0% |
| !! | TTTCAAATTCTTTGGCTTTC+AGG | - | chr7.4:15373985-15374004 | MS.gene055974:intron | 30.0% |
| !!! | AATCAAGCCCTTTATTTTTC+GGG | - | chr7.4:15374247-15374266 | MS.gene055974:CDS | 30.0% |
| !!! | GAATCAAGCCCTTTATTTTT+CGG | - | chr7.4:15374246-15374265 | MS.gene055974:CDS | 30.0% |
| !!! | TTTCAGGTTTTCAATTGCTA+TGG | - | chr7.4:15374001-15374020 | MS.gene055974:intron | 30.0% |
| AAATGTAACAAATCAGAGGG+AGG | - | chr7.4:15373788-15373807 | MS.gene055974:intron | 35.0% | |
| AATGTTAAACAGTACTGCAG+GGG | + | chr7.4:15373455-15373474 | None:intergenic | 35.0% | |
| ACCATGATCTTGGGAATATA+AGG | - | chr7.4:15372907-15372926 | MS.gene055974:intron | 35.0% | |
| ACCTTATATTCCCAAGATCA+TGG | + | chr7.4:15372911-15372930 | None:intergenic | 35.0% | |
| ACTCATCCAATTTAGTTGCA+TGG | - | chr7.4:15373629-15373648 | MS.gene055974:CDS | 35.0% | |
| AGAATGTTAAACAGTACTGC+AGG | + | chr7.4:15373457-15373476 | None:intergenic | 35.0% | |
| AGATCACATGACATACACTT+AGG | - | chr7.4:15373565-15373584 | MS.gene055974:CDS | 35.0% | |
| ATCTCTTGTTGATCATCTCA+AGG | - | chr7.4:15373106-15373125 | MS.gene055974:intron | 35.0% | |
| ATCTTCTTTCCATATACGAC+CGG | + | chr7.4:15374305-15374324 | None:intergenic | 35.0% | |
| ATGAAGTTGAAAATGCCACA+TGG | - | chr7.4:15373195-15373214 | MS.gene055974:intron | 35.0% | |
| CTTACAAAATCCACTAGTGT+TGG | - | chr7.4:15372399-15372418 | MS.gene055974:CDS | 35.0% | |
| GAATGTTAAACAGTACTGCA+GGG | + | chr7.4:15373456-15373475 | None:intergenic | 35.0% | |
| GAGTTGAAATTGAGAATCAC+CGG | - | chr7.4:15374283-15374302 | MS.gene055974:CDS | 35.0% | |
| GCAATAGCGCATTTGAAAAA+AGG | + | chr7.4:15372579-15372598 | None:intergenic | 35.0% | |
| TCAAGCGTCTATTCATGTTT+CGG | - | chr7.4:15372548-15372567 | MS.gene055974:CDS | 35.0% | |
| TTATTATCTGCAACTGCAAG+TGG | - | chr7.4:15373482-15373501 | MS.gene055974:CDS | 35.0% | |
| TTCAGATTATGAAACAGGCA+AGG | - | chr7.4:15372347-15372366 | MS.gene055974:CDS | 35.0% | |
| TTCAGTTACAGCTTAGAAGT+CGG | - | chr7.4:15374124-15374143 | MS.gene055974:CDS | 35.0% | |
| TTGAGATGATCAACAAGAGA+TGG | + | chr7.4:15373107-15373126 | None:intergenic | 35.0% | |
| ! | CAGTTTTTATGGCCTTCTTA+CGG | - | chr7.4:15374071-15374090 | MS.gene055974:intron | 35.0% |
| ! | TCTTGGGAATATAAGGTGTT+TGG | - | chr7.4:15372914-15372933 | MS.gene055974:intron | 35.0% |
| ! | TGGCATTTTCAACTTCATGT+GGG | + | chr7.4:15373193-15373212 | None:intergenic | 35.0% |
| AATGGTGTGCATGACTTACT+CGG | - | chr7.4:15372453-15372472 | MS.gene055974:CDS | 40.0% | |
| AGACAGTCAGATCAACAAAC+AGG | + | chr7.4:15373246-15373265 | None:intergenic | 40.0% | |
| ATCCCCACCCGAAAAATAAA+GGG | + | chr7.4:15374257-15374276 | None:intergenic | 40.0% | |
| ATGGCCTTCTTACGGTTTAT+GGG | - | chr7.4:15374079-15374098 | MS.gene055974:intron | 40.0% | |
| CAAGCGTCTATTCATGTTTC+GGG | - | chr7.4:15372549-15372568 | MS.gene055974:CDS | 40.0% | |
| CACGGAACTAGTTCAAAGAA+TGG | - | chr7.4:15372435-15372454 | MS.gene055974:CDS | 40.0% | |
| CGTAAGAAGGCCATAAAAAC+TGG | + | chr7.4:15374073-15374092 | None:intergenic | 40.0% | |
| CTTGCAGATATCAGAGTCTA+GGG | - | chr7.4:15372970-15372989 | MS.gene055974:intron | 40.0% | |
| GAACATAACGTATGGCCATT+TGG | + | chr7.4:15372846-15372865 | None:intergenic | 40.0% | |
| GCAAAGTAGCTACAACTTGA+TGG | - | chr7.4:15373815-15373834 | MS.gene055974:intron | 40.0% | |
| GCATTTCTGTTTGCACTTTG+AGG | - | chr7.4:15374027-15374046 | MS.gene055974:intron | 40.0% | |
| GTTGGATTGAATGGAAAGCA+CGG | - | chr7.4:15372417-15372436 | MS.gene055974:CDS | 40.0% | |
| TATCCCCACCCGAAAAATAA+AGG | + | chr7.4:15374258-15374277 | None:intergenic | 40.0% | |
| TATGGCCTTCTTACGGTTTA+TGG | - | chr7.4:15374078-15374097 | MS.gene055974:intron | 40.0% | |
| TCATCTCAAGGATGAACACA+AGG | - | chr7.4:15373118-15373137 | MS.gene055974:intron | 40.0% | |
| TCCATTCAATCCAACACTAG+TGG | + | chr7.4:15372412-15372431 | None:intergenic | 40.0% | |
| TGTGTGTTTCAGTGTCCAAA+TGG | - | chr7.4:15372828-15372847 | MS.gene055974:intron | 40.0% | |
| TTGAAGACGAGAAATCGCAT+TGG | - | chr7.4:15373839-15373858 | MS.gene055974:intron | 40.0% | |
| TTGTATGGCAAGGAATTCCT+AGG | - | chr7.4:15374164-15374183 | MS.gene055974:CDS | 40.0% | |
| ! | GAATATAAGGTGTTTGGCTC+TGG | - | chr7.4:15372920-15372939 | MS.gene055974:intron | 40.0% |
| ! | GTGGCATTTTCAACTTCATG+TGG | + | chr7.4:15373194-15373213 | None:intergenic | 40.0% |
| ! | TCCACTAGTGTTGGATTGAA+TGG | - | chr7.4:15372408-15372427 | MS.gene055974:CDS | 40.0% |
| ! | TCTTTGAAAATACCTCCTCC+CGG | + | chr7.4:15372303-15372322 | None:intergenic | 40.0% |
| ! | TGGTACAGCTCCAGTTTTTA+TGG | - | chr7.4:15374060-15374079 | MS.gene055974:intron | 40.0% |
| !!! | AAGCCCTTTATTTTTCGGGT+GGG | - | chr7.4:15374251-15374270 | MS.gene055974:CDS | 40.0% |
| ACTTACAGTGAGCATCCATG+TGG | + | chr7.4:15373213-15373232 | None:intergenic | 45.0% | |
| AGCTTAGAAGTCGGTGCATA+TGG | - | chr7.4:15374133-15374152 | MS.gene055974:CDS | 45.0% | |
| ATCGCCCATAAACCGTAAGA+AGG | + | chr7.4:15374086-15374105 | None:intergenic | 45.0% | |
| ATGGTGTGCATGACTTACTC+GGG | - | chr7.4:15372454-15372473 | MS.gene055974:CDS | 45.0% | |
| ATTCCCAAGATCATGGTGAC+AGG | + | chr7.4:15372904-15372923 | None:intergenic | 45.0% | |
| CACAAGGTTGACATGCATGA+TGG | - | chr7.4:15373134-15373153 | MS.gene055974:intron | 45.0% | |
| CATATGGGCGCAAACTTGTA+TGG | - | chr7.4:15374149-15374168 | MS.gene055974:CDS | 45.0% | |
| CCAGCATAGGGACAATTGTA+TGG | + | chr7.4:15373056-15373075 | None:intergenic | 45.0% | |
| CCATACAATTGTCCCTATGC+TGG | - | chr7.4:15373053-15373072 | MS.gene055974:intron | 45.0% | |
| CCTAGACTCTGATATCTGCA+AGG | + | chr7.4:15372972-15372991 | None:intergenic | 45.0% | |
| CCTTGCAGATATCAGAGTCT+AGG | - | chr7.4:15372969-15372988 | MS.gene055974:intron | 45.0% | |
| GATGTATCCTCCAATTCACC+AGG | - | chr7.4:15372497-15372516 | MS.gene055974:CDS | 45.0% | |
| GCTCACTGTAAGTGACTCAA+TGG | - | chr7.4:15373220-15373239 | MS.gene055974:intron | 45.0% | |
| GCTTAGAAGTCGGTGCATAT+GGG | - | chr7.4:15374134-15374153 | MS.gene055974:CDS | 45.0% | |
| TGAGAATCACCGGTCGTATA+TGG | - | chr7.4:15374293-15374312 | MS.gene055974:CDS | 45.0% | |
| !!! | AGCCCTTTATTTTTCGGGTG+GGG | - | chr7.4:15374252-15374271 | MS.gene055974:CDS | 45.0% |
| !!! | CAAGCCCTTTATTTTTCGGG+TGG | - | chr7.4:15374250-15374269 | MS.gene055974:CDS | 45.0% |
| !!! | TTTTTCGGGTGGGGATAAAC+AGG | - | chr7.4:15374261-15374280 | MS.gene055974:CDS | 45.0% |
| AAACTGGAGCTGTACCAAGC+TGG | + | chr7.4:15374057-15374076 | None:intergenic | 50.0% | |
| AAGCAGTGCACCTGGTGAAT+TGG | + | chr7.4:15372510-15372529 | None:intergenic | 50.0% | |
| AGATGGAATGTCGCCCATCA+CGG | + | chr7.4:15373090-15373109 | None:intergenic | 50.0% | |
| CCAAGATCATGGTGACAGGT+GGG | + | chr7.4:15372900-15372919 | None:intergenic | 50.0% | |
| CCACCTGTCACCATGATCTT+GGG | - | chr7.4:15372898-15372917 | MS.gene055974:intron | 50.0% | |
| GAAATTGCAAGCAGTGCACC+TGG | + | chr7.4:15372518-15372537 | None:intergenic | 50.0% | |
| GACAGGTGGGACAGAGATTA+TGG | + | chr7.4:15372887-15372906 | None:intergenic | 50.0% | |
| GAGCACTCAGATCCAGCATA+GGG | + | chr7.4:15373068-15373087 | None:intergenic | 50.0% | |
| TCTGCAACTGCAAGTGGTGT+TGG | - | chr7.4:15373488-15373507 | MS.gene055974:CDS | 50.0% | |
| ! | AAACAGTACTGCAGGGGCAT+TGG | + | chr7.4:15373449-15373468 | None:intergenic | 50.0% |
| ! | GGAGAAAGTGGCGGAATCTT+TGG | - | chr7.4:15372941-15372960 | MS.gene055974:intron | 50.0% |
| !! | CACTTTGAGGCTTTCCAGCT+TGG | - | chr7.4:15374040-15374059 | MS.gene055974:intron | 50.0% |
| !! | GTGTTTGGCTCTGGAGAAAG+TGG | - | chr7.4:15372929-15372948 | MS.gene055974:intron | 50.0% |
| !! | TTTGGCTCTGGAGAAAGTGG+CGG | - | chr7.4:15372932-15372951 | MS.gene055974:intron | 50.0% |
| CAGTGCACCTGGTGAATTGG+AGG | + | chr7.4:15372507-15372526 | None:intergenic | 55.0% | |
| CCCAAGATCATGGTGACAGG+TGG | + | chr7.4:15372901-15372920 | None:intergenic | 55.0% | |
| CCCACCTGTCACCATGATCT+TGG | - | chr7.4:15372897-15372916 | MS.gene055974:intron | 55.0% | |
| GGATCTGAGTGCTCCGTGAT+GGG | - | chr7.4:15373074-15373093 | MS.gene055974:intron | 55.0% | |
| GGGCGCAAACTTGTATGGCA+AGG | - | chr7.4:15374154-15374173 | MS.gene055974:CDS | 55.0% | |
| TGACTGTCGCGTATGCTCCT+AGG | + | chr7.4:15374184-15374203 | None:intergenic | 55.0% | |
| TGGATCTGAGTGCTCCGTGA+TGG | - | chr7.4:15373073-15373092 | MS.gene055974:intron | 55.0% | |
| ! | GGAGCACTCAGATCCAGCAT+AGG | + | chr7.4:15373069-15373088 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15372294 | 15374327 | 15372294 | ID=MS.gene055974 |
| chr7.4 | mRNA | 15372294 | 15374327 | 15372294 | ID=MS.gene055974.t1;Parent=MS.gene055974 |
| chr7.4 | exon | 15374103 | 15374327 | 15374103 | ID=MS.gene055974.t1.exon1;Parent=MS.gene055974.t1 |
| chr7.4 | CDS | 15374103 | 15374327 | 15374103 | ID=cds.MS.gene055974.t1;Parent=MS.gene055974.t1 |
| chr7.4 | exon | 15373395 | 15373781 | 15373395 | ID=MS.gene055974.t1.exon2;Parent=MS.gene055974.t1 |
| chr7.4 | CDS | 15373395 | 15373781 | 15373395 | ID=cds.MS.gene055974.t1;Parent=MS.gene055974.t1 |
| chr7.4 | exon | 15372294 | 15372614 | 15372294 | ID=MS.gene055974.t1.exon3;Parent=MS.gene055974.t1 |
| chr7.4 | CDS | 15372294 | 15372614 | 15372294 | ID=cds.MS.gene055974.t1;Parent=MS.gene055974.t1 |
| Gene Sequence |
| Protein sequence |
