AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52683

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52683.t1 MTR_7g093600 97.419 310 8 0 1 310 1 310 0.0 636
MS.gene52683.t1 MTR_1g054335 80.645 310 59 1 1 310 1 309 0.0 530
MS.gene52683.t1 MTR_3g091510 75.379 264 65 0 46 309 47 310 3.54e-156 439
MS.gene52683.t1 MTR_1g008120 75.281 267 66 0 43 309 52 318 6.91e-156 439
MS.gene52683.t1 MTR_8g027520 75.096 261 65 0 49 309 34 294 2.13e-154 434
MS.gene52683.t1 MTR_8g027520 75.096 261 65 0 49 309 43 303 2.52e-154 434
MS.gene52683.t1 MTR_3g017590 75.191 262 64 1 48 309 43 303 1.70e-153 432
MS.gene52683.t1 MTR_7g117415 74.170 271 67 1 39 309 44 311 1.53e-152 430
MS.gene52683.t1 MTR_8g038370 73.047 256 69 0 54 309 107 362 3.67e-148 421
MS.gene52683.t1 MTR_4g094468 28.972 214 139 5 58 270 96 297 6.03e-21 91.7
MS.gene52683.t1 MTR_5g076660 25.912 274 189 6 33 306 7 266 7.11e-21 91.7
MS.gene52683.t1 MTR_7g024290 26.316 209 144 4 59 267 11 209 2.87e-18 84.0
MS.gene52683.t1 MTR_2g038430 32.558 129 82 2 59 184 25 151 4.14e-18 84.0
MS.gene52683.t1 MTR_5g067400 24.903 257 170 6 58 310 10 247 1.93e-17 81.6
MS.gene52683.t1 MTR_5g061290 30.303 132 86 4 59 189 18 144 1.67e-16 79.0
MS.gene52683.t1 MTR_5g076370 25.424 236 162 6 72 307 47 268 5.32e-16 77.8
MS.gene52683.t1 MTR_5g076540 28.972 214 132 6 59 267 11 209 5.66e-16 76.3
MS.gene52683.t1 MTR_7g094390 28.743 167 113 3 59 225 172 332 1.04e-15 77.8
MS.gene52683.t1 MTR_5g076520 27.419 248 161 5 55 302 7 235 1.88e-15 75.9
MS.gene52683.t1 MTR_2g038420 28.244 131 91 2 59 189 25 152 3.87e-14 72.4
MS.gene52683.t1 MTR_5g076820 25.100 251 154 8 59 302 19 242 1.95e-13 69.7
MS.gene52683.t1 MTR_5g076720 27.273 209 142 5 59 267 82 280 5.24e-13 69.3
MS.gene52683.t1 MTR_1g046650 25.306 245 163 6 58 302 10 234 1.03e-12 67.8
MS.gene52683.t1 MTR_1g046650 25.306 245 163 6 58 302 41 265 1.10e-12 68.2
MS.gene52683.t1 MTR_5g076505 27.815 151 103 3 75 225 23 167 1.54e-12 67.4
MS.gene52683.t1 MTR_1g046640 25.820 244 161 7 59 302 11 234 1.86e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52683.t1 AT3G58040 78.387 310 65 2 1 310 1 308 0.0 512
MS.gene52683.t1 AT3G58040 78.387 310 65 2 1 310 1 308 0.0 512
MS.gene52683.t1 AT2G41980 77.097 310 66 2 1 310 1 305 0.0 501
MS.gene52683.t1 AT3G61790 76.744 258 60 0 52 309 53 310 4.11e-156 439
MS.gene52683.t1 AT4G27880 72.727 264 72 0 46 309 48 311 5.21e-152 429
MS.gene52683.t1 AT5G53360 75.369 203 50 0 107 309 15 217 9.75e-119 341
MS.gene52683.t1 AT5G53360 75.369 203 50 0 107 309 15 217 9.75e-119 341
MS.gene52683.t1 AT3G58040 74.634 205 50 2 1 205 1 203 1.61e-109 317
MS.gene52683.t1 AT3G13672 50.495 202 94 2 111 309 13 211 1.43e-70 218
MS.gene52683.t1 AT3G13672 44.978 229 93 3 111 309 13 238 6.06e-65 204
MS.gene52683.t1 AT5G53360 74.286 105 27 0 205 309 60 164 2.61e-56 180
MS.gene52683.t1 AT5G37870 39.062 128 75 2 58 185 41 165 1.47e-24 100
MS.gene52683.t1 AT5G37930 38.462 130 77 2 58 187 109 235 5.95e-22 94.7
MS.gene52683.t1 AT5G37890 27.126 247 165 6 58 302 47 280 8.46e-21 90.5
MS.gene52683.t1 AT1G66620 31.613 155 101 2 23 174 2 154 8.00e-19 85.5
MS.gene52683.t1 AT5G62800 27.344 256 156 8 58 302 39 275 8.70e-19 85.9
MS.gene52683.t1 AT5G37910 26.087 253 176 6 58 309 34 276 1.77e-18 84.0
MS.gene52683.t1 AT5G62800 27.570 214 131 5 58 261 39 238 4.79e-18 83.2
MS.gene52683.t1 AT1G66630 37.705 122 72 2 58 177 45 164 1.36e-16 79.0
MS.gene52683.t1 AT1G66660 36.607 112 69 1 58 169 102 211 3.57e-16 78.6
MS.gene52683.t1 AT1G66650 33.333 135 85 3 58 189 82 214 5.19e-16 77.8
MS.gene52683.t1 AT1G66610 34.400 125 66 3 7 121 102 220 3.10e-14 71.2

Find 74 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCCTTCTTACGGTTTA+TGG 0.117780 7.2:-15858581 MS.gene52683:CDS
TGCGAATCACCGGTCGTATA+TGG 0.237311 7.2:-15858366 MS.gene52683:CDS
GGAGAAAGTGGCTGAATCTT+TGG 0.299857 7.2:-15859713 MS.gene52683:CDS
GACAGGTGGGACAGAGATTA+TGG 0.312010 7.2:+15859770 None:intergenic
TCCATTAGTGTTGGATTGAA+TGG 0.312273 7.2:-15860279 MS.gene52683:CDS
CATATGGGCGCAAACTTATA+TGG 0.315205 7.2:-15858510 MS.gene52683:CDS
TCCATTCAATCCAACACTAA+TGG 0.315549 7.2:+15860278 None:intergenic
AGCTTAGAAGTCGGTGCATA+TGG 0.322324 7.2:-15858526 MS.gene52683:CDS
ATGGCCTTCTTACGGTTTAT+GGG 0.324454 7.2:-15858580 MS.gene52683:CDS
CCCACCTGTCACCATGATCT+TGG 0.343411 7.2:-15859757 MS.gene52683:CDS
GCATTTCTGTTTGCACTTTG+AGG 0.351473 7.2:-15858632 MS.gene52683:CDS
TGTTTAAGCTTTGCATAGTA+AGG 0.352415 7.2:+15859646 None:intergenic
TGGATCTGAGTGCTCCGTTA+TGG 0.353234 7.2:-15859581 MS.gene52683:CDS
ACCATGATCTTGGGAATATA+AGG 0.354435 7.2:-15859747 MS.gene52683:CDS
CACTTTGAGGCTTTCCAGCT+TGG 0.356658 7.2:-15858619 MS.gene52683:CDS
GAATATAAGGTGTTTGGCTC+TGG 0.367722 7.2:-15859734 MS.gene52683:CDS
TTGACTTCAGATTATGAAAC+AGG 0.369439 7.2:-15860345 MS.gene52683:CDS
TGTAAGTGAACAGTTAATCT+TGG 0.386090 7.2:+15860305 None:intergenic
GGATCTGAGTGCTCCGTTAT+GGG 0.399413 7.2:-15859580 MS.gene52683:CDS
GAACATAACGTATGGCCATT+TGG 0.409073 7.2:+15859811 None:intergenic
TCTTGGGAATATAAGGTGTT+TGG 0.412899 7.2:-15859740 MS.gene52683:CDS
CCACCTGTCACCATGATCTT+GGG 0.439936 7.2:-15859756 MS.gene52683:CDS
CCATACAATTGTCCCTATGC+TGG 0.460910 7.2:-15859601 MS.gene52683:CDS
TACATCAAATTGTTGCAGAC+AGG 0.476960 7.2:+15860207 None:intergenic
AAGCAGTGCACCTGGTGAAT+TGG 0.478324 7.2:+15860180 None:intergenic
CCTTGCAGATATCAGAGTCT+AGG 0.480797 7.2:-15859685 MS.gene52683:CDS
CTTACAAAATCCATTAGTGT+TGG 0.484894 7.2:-15860288 MS.gene52683:CDS
CCAGCATAGGGACAATTGTA+TGG 0.489704 7.2:+15859601 None:intergenic
ATCTTCTTTCCATATACGAC+CGG 0.495873 7.2:+15858357 None:intergenic
CTTAAACATGAGCAAAATTG+TGG 0.498784 7.2:-15859631 MS.gene52683:CDS
TCAGAAATGGCTCCGGGAGG+AGG 0.504929 7.2:-15860399 None:intergenic
TTATATGGCAAGGAATTCCT+AGG 0.506193 7.2:-15858495 MS.gene52683:CDS
TACAATTTGAACATAACGTA+TGG 0.506717 7.2:+15859803 None:intergenic
AAAGTTAGAGATAGTCAAGA+TGG 0.510900 7.2:-15858451 MS.gene52683:CDS
TGACTGTCGCGTATGCTCCT+AGG 0.511842 7.2:+15858478 None:intergenic
ATCTCTTGTTGATCATCTCA+AGG 0.513200 7.2:-15859548 MS.gene52683:CDS
ATCGGATCAGAAATGGCTCC+GGG 0.513632 7.2:-15860405 None:intergenic
CAGTGCACCTGGTGAATTGG+AGG 0.518998 7.2:+15860183 None:intergenic
ACCTTATATTCCCAAGATCA+TGG 0.520727 7.2:+15859746 None:intergenic
GATCGGATCAGAAATGGCTC+CGG 0.522089 7.2:-15860406 None:intergenic
GTTTAAGCTTTGCATAGTAA+GGG 0.527406 7.2:+15859647 None:intergenic
AAACTGGAGCTGTACCAAGC+TGG 0.527478 7.2:+15858605 None:intergenic
TGTGTGTTTCAGTGTCCAAA+TGG 0.537348 7.2:-15859826 MS.gene52683:intron
TTGAGATGATCAACAAGAGA+TGG 0.537565 7.2:+15859550 None:intergenic
TTTGACATATCGATGATTGA+AGG 0.543895 7.2:+15859492 None:intergenic
AATGGTGTGCATGACTTACT+CGG 0.545764 7.2:-15860234 MS.gene52683:CDS
CTTGCAGATATCAGAGTCTA+GGG 0.551230 7.2:-15859684 MS.gene52683:CDS
CACGGAACTAGTTCAAAGAA+TGG 0.551902 7.2:-15860252 MS.gene52683:CDS
GTGTTTGGCTCTGGAGAAAG+TGG 0.555229 7.2:-15859725 MS.gene52683:CDS
AGATGGAATGTCACCCATAA+CGG 0.557116 7.2:+15859567 None:intergenic
ATTCCCAAGATCATGGTGAC+AGG 0.559471 7.2:+15859753 None:intergenic
CCCAAGATCATGGTGACAGG+TGG 0.563063 7.2:+15859756 None:intergenic
GAGTTGAAATTGCGAATCAC+CGG 0.566590 7.2:-15858376 MS.gene52683:CDS
ATCGCCCATAAACCGTAAGA+AGG 0.570793 7.2:+15858576 None:intergenic
ACATCAAATTGTTGCAGACA+GGG 0.575889 7.2:+15860208 None:intergenic
CACAAGGTTGACATGCATGA+TGG 0.576711 7.2:-15859520 MS.gene52683:CDS
TTCAGTTACAGCTTAGAAGT+CGG 0.578117 7.2:-15858535 MS.gene52683:CDS
TCTTTGAAAATACCTCCTCC+CGG 0.578930 7.2:+15860387 None:intergenic
TTTCATAATCTGAAGTCAAG+AGG 0.592761 7.2:+15860349 None:intergenic
GCTTAGAAGTCGGTGCATAT+GGG 0.598441 7.2:-15858525 MS.gene52683:CDS
GAGCACTCAGATCCAGCATA+GGG 0.606589 7.2:+15859589 None:intergenic
GATGTATCCTCCAATTCACC+AGG 0.614890 7.2:-15860190 MS.gene52683:intron
GGGCGCAAACTTATATGGCA+AGG 0.619069 7.2:-15858505 MS.gene52683:CDS
GGAGCACTCAGATCCAGCAT+AGG 0.620419 7.2:+15859588 None:intergenic
CCAAGATCATGGTGACAGGT+GGG 0.628103 7.2:+15859757 None:intergenic
AAGATGGACTAATAATTCAG+AGG 0.639261 7.2:-15858435 MS.gene52683:CDS
TTCAGATTATGAAACAGGCA+AGG 0.651216 7.2:-15860340 MS.gene52683:CDS
GTTGGATTGAATGGAAAGCA+CGG 0.653878 7.2:-15860270 MS.gene52683:CDS
ATGGTGTGCATGACTTACTC+GGG 0.659438 7.2:-15860233 MS.gene52683:CDS
CCTAGACTCTGATATCTGCA+AGG 0.660946 7.2:+15859685 None:intergenic
TCATCTCAAGGATGAACACA+AGG 0.664179 7.2:-15859536 MS.gene52683:CDS
ATGAAGTTGAAAATGCCACA+TGG 0.708825 7.2:-15859459 MS.gene52683:CDS
ACTTACAGTGAGCATCCATG+TGG 0.726222 7.2:+15859444 None:intergenic
GGATCAGAAATGGCTCCGGG+AGG 0.729551 7.2:-15860402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGAAATTTTAAATTTAGC+AGG + chr7.2:15858881-15858900 None:intergenic 15.0%
!! ACCAACTAATAAATATTTGA+AGG - chr7.2:15860008-15860027 MS.gene52683:intron 20.0%
!! ATTAAAAAGTAGTGTAATCT+TGG + chr7.2:15859487-15859506 None:intergenic 20.0%
!! TCCTTCAAATATTTATTAGT+TGG + chr7.2:15860012-15860031 None:intergenic 20.0%
!!! ACAATATTGGTAACTATTAT+TGG + chr7.2:15858853-15858872 None:intergenic 20.0%
!!! ATTTAATTTTACGTTCACAA+TGG - chr7.2:15859441-15859460 MS.gene52683:intron 20.0%
!!! GATAAAAACCTTTAGTTTAT+AGG - chr7.2:15858787-15858806 MS.gene52683:intron 20.0%
!!! TAATAAAAACTTGCTTCTAT+TGG - chr7.2:15859503-15859522 MS.gene52683:CDS 20.0%
! ATAAAACCATGCAACTAAAT+TGG + chr7.2:15859726-15859745 None:intergenic 25.0%
! GTGAAATACCTATAAACTAA+AGG + chr7.2:15858798-15858817 None:intergenic 25.0%
! TACAAATGTAACAAATCAGA+GGG - chr7.2:15859873-15859892 MS.gene52683:intron 25.0%
! TACAATTTGAACATAACGTA+TGG + chr7.2:15858947-15858966 None:intergenic 25.0%
! TAGACTAGAAGTTAAAAATG+AGG + chr7.2:15859848-15859867 None:intergenic 25.0%
! TCTATATTCAATACTTAGTG+AGG + chr7.2:15859636-15859655 None:intergenic 25.0%
! TTACAAATGTAACAAATCAG+AGG - chr7.2:15859872-15859891 MS.gene52683:intron 25.0%
! TTAGCAGGATATTACAATAT+TGG + chr7.2:15858866-15858885 None:intergenic 25.0%
! TTTATCTGTTTATTATCGCT+TGG + chr7.2:15858773-15858792 None:intergenic 25.0%
!! AAAGAATTTGAAATGCAAGA+GGG + chr7.2:15860066-15860085 None:intergenic 25.0%
AAAGTTAGAGATAGTCAAGA+TGG - chr7.2:15860296-15860315 MS.gene52683:CDS 30.0%
CTCTTGCATTTCAAATTCTT+TGG - chr7.2:15860065-15860084 MS.gene52683:intron 30.0%
CTTAAACATGAGCAAAATTG+TGG - chr7.2:15859116-15859135 MS.gene52683:intron 30.0%
CTTACAAAATCCATTAGTGT+TGG - chr7.2:15858459-15858478 MS.gene52683:CDS 30.0%
GTTTAAGCTTTGCATAGTAA+GGG + chr7.2:15859103-15859122 None:intergenic 30.0%
TGCAGTTGCAGATAATAAAA+AGG + chr7.2:15859568-15859587 None:intergenic 30.0%
TGTAAGTGAACAGTTAATCT+TGG + chr7.2:15858445-15858464 None:intergenic 30.0%
TGTTTAAGCTTTGCATAGTA+AGG + chr7.2:15859104-15859123 None:intergenic 30.0%
TTGACTTCAGATTATGAAAC+AGG - chr7.2:15858402-15858421 MS.gene52683:CDS 30.0%
TTTGACATATCGATGATTGA+AGG + chr7.2:15859258-15859277 None:intergenic 30.0%
! AAGAATTTGAAATGCAAGAG+GGG + chr7.2:15860065-15860084 None:intergenic 30.0%
! AGTCTAAAGCTATGGTATAT+AGG - chr7.2:15859790-15859809 MS.gene52683:CDS 30.0%
! ATTTCCTTAGTCTAAAGCTA+TGG - chr7.2:15859782-15859801 MS.gene52683:CDS 30.0%
! CAAAGAATTTGAAATGCAAG+AGG + chr7.2:15860067-15860086 None:intergenic 30.0%
! TTTCATAATCTGAAGTCAAG+AGG + chr7.2:15858401-15858420 None:intergenic 30.0%
!! AAGATGGACTAATAATTCAG+AGG - chr7.2:15860312-15860331 MS.gene52683:CDS 30.0%
!! ATACATAAGTCGCTATTTCT+AGG - chr7.2:15859966-15859985 MS.gene52683:intron 30.0%
!! TACATAAGTCGCTATTTCTA+GGG - chr7.2:15859967-15859986 MS.gene52683:intron 30.0%
!! TATACCATAGCTTTAGACTA+AGG + chr7.2:15859789-15859808 None:intergenic 30.0%
!! TTTCAAATTCTTTGGCTTTC+AGG - chr7.2:15860073-15860092 MS.gene52683:intron 30.0%
!!! AATCAAGCCCTTTATTTTTC+GGG - chr7.2:15860335-15860354 MS.gene52683:CDS 30.0%
!!! GAATCAAGCCCTTTATTTTT+CGG - chr7.2:15860334-15860353 MS.gene52683:CDS 30.0%
!!! TTTCAGGTTTTCAATTGCTA+TGG - chr7.2:15860089-15860108 MS.gene52683:intron 30.0%
AAATGTAACAAATCAGAGGG+AGG - chr7.2:15859876-15859895 MS.gene52683:intron 35.0%
AATGTTAAACAGTACTGCAG+GGG + chr7.2:15859543-15859562 None:intergenic 35.0%
ACATCAAATTGTTGCAGACA+GGG + chr7.2:15858542-15858561 None:intergenic 35.0%
ACCATGATCTTGGGAATATA+AGG - chr7.2:15859000-15859019 MS.gene52683:intron 35.0%
ACCTTATATTCCCAAGATCA+TGG + chr7.2:15859004-15859023 None:intergenic 35.0%
ACTCATCCAATTTAGTTGCA+TGG - chr7.2:15859717-15859736 MS.gene52683:CDS 35.0%
AGAATGTTAAACAGTACTGC+AGG + chr7.2:15859545-15859564 None:intergenic 35.0%
AGATCACATGACATACACTT+AGG - chr7.2:15859653-15859672 MS.gene52683:CDS 35.0%
ATCTCTTGTTGATCATCTCA+AGG - chr7.2:15859199-15859218 MS.gene52683:intron 35.0%
ATCTTCTTTCCATATACGAC+CGG + chr7.2:15860393-15860412 None:intergenic 35.0%
ATGAAGTTGAAAATGCCACA+TGG - chr7.2:15859288-15859307 MS.gene52683:intron 35.0%
ATGGTATATAGGTTCTGCTT+TGG - chr7.2:15859801-15859820 MS.gene52683:CDS 35.0%
GAATGTTAAACAGTACTGCA+GGG + chr7.2:15859544-15859563 None:intergenic 35.0%
GCAATAGCGCATTTGAAAAA+AGG + chr7.2:15858639-15858658 None:intergenic 35.0%
TACATCAAATTGTTGCAGAC+AGG + chr7.2:15858543-15858562 None:intergenic 35.0%
TCAAGCGTCTATTCATGTTT+CGG - chr7.2:15858608-15858627 MS.gene52683:CDS 35.0%
TCCATTCAATCCAACACTAA+TGG + chr7.2:15858472-15858491 None:intergenic 35.0%
TTATATGGCAAGGAATTCCT+AGG - chr7.2:15860252-15860271 MS.gene52683:CDS 35.0%
TTATTATCTGCAACTGCAAG+TGG - chr7.2:15859570-15859589 MS.gene52683:CDS 35.0%
TTCAGATTATGAAACAGGCA+AGG - chr7.2:15858407-15858426 MS.gene52683:CDS 35.0%
TTCAGTTACAGCTTAGAAGT+CGG - chr7.2:15860212-15860231 MS.gene52683:CDS 35.0%
TTGAGATGATCAACAAGAGA+TGG + chr7.2:15859200-15859219 None:intergenic 35.0%
! CAGTTTTTATGGCCTTCTTA+CGG - chr7.2:15860159-15860178 MS.gene52683:intron 35.0%
! TCCATTAGTGTTGGATTGAA+TGG - chr7.2:15858468-15858487 MS.gene52683:CDS 35.0%
! TCTTGGGAATATAAGGTGTT+TGG - chr7.2:15859007-15859026 MS.gene52683:intron 35.0%
! TGGCATTTTCAACTTCATGT+GGG + chr7.2:15859286-15859305 None:intergenic 35.0%
AATGGTGTGCATGACTTACT+CGG - chr7.2:15858513-15858532 MS.gene52683:CDS 40.0%
AGACAGTCAGATCAACAAAC+AGG + chr7.2:15859339-15859358 None:intergenic 40.0%
AGATGGAATGTCACCCATAA+CGG + chr7.2:15859183-15859202 None:intergenic 40.0%
ATCCCCACCCGAAAAATAAA+GGG + chr7.2:15860345-15860364 None:intergenic 40.0%
ATGGCCTTCTTACGGTTTAT+GGG - chr7.2:15860167-15860186 MS.gene52683:intron 40.0%
CAAGCGTCTATTCATGTTTC+GGG - chr7.2:15858609-15858628 MS.gene52683:CDS 40.0%
CACGGAACTAGTTCAAAGAA+TGG - chr7.2:15858495-15858514 MS.gene52683:CDS 40.0%
CATATGGGCGCAAACTTATA+TGG - chr7.2:15860237-15860256 MS.gene52683:CDS 40.0%
CGTAAGAAGGCCATAAAAAC+TGG + chr7.2:15860161-15860180 None:intergenic 40.0%
CTTGCAGATATCAGAGTCTA+GGG - chr7.2:15859063-15859082 MS.gene52683:intron 40.0%
GAACATAACGTATGGCCATT+TGG + chr7.2:15858939-15858958 None:intergenic 40.0%
GAGTTGAAATTGCGAATCAC+CGG - chr7.2:15860371-15860390 MS.gene52683:CDS 40.0%
GCAAAGTAGCTACAACTTGA+TGG - chr7.2:15859903-15859922 MS.gene52683:intron 40.0%
GCATTTCTGTTTGCACTTTG+AGG - chr7.2:15860115-15860134 MS.gene52683:intron 40.0%
GTTGGATTGAATGGAAAGCA+CGG - chr7.2:15858477-15858496 MS.gene52683:CDS 40.0%
TATCCCCACCCGAAAAATAA+AGG + chr7.2:15860346-15860365 None:intergenic 40.0%
TATGGCCTTCTTACGGTTTA+TGG - chr7.2:15860166-15860185 MS.gene52683:intron 40.0%
TCATCTCAAGGATGAACACA+AGG - chr7.2:15859211-15859230 MS.gene52683:intron 40.0%
TGGCCATACTTGTTCAATAG+AGG - chr7.2:15859461-15859480 MS.gene52683:CDS 40.0%
TGGCCTCTATTGAACAAGTA+TGG + chr7.2:15859467-15859486 None:intergenic 40.0%
TGTGTGTTTCAGTGTCCAAA+TGG - chr7.2:15858921-15858940 MS.gene52683:intron 40.0%
TTGAAGACGAGAAATCGCAT+TGG - chr7.2:15859927-15859946 MS.gene52683:intron 40.0%
! GAATATAAGGTGTTTGGCTC+TGG - chr7.2:15859013-15859032 MS.gene52683:intron 40.0%
! GTGGCATTTTCAACTTCATG+TGG + chr7.2:15859287-15859306 None:intergenic 40.0%
! TCTTTGAAAATACCTCCTCC+CGG + chr7.2:15858363-15858382 None:intergenic 40.0%
! TGGTACAGCTCCAGTTTTTA+TGG - chr7.2:15860148-15860167 MS.gene52683:intron 40.0%
!!! AAGCCCTTTATTTTTCGGGT+GGG - chr7.2:15860339-15860358 MS.gene52683:CDS 40.0%
ACTTACAGTGAGCATCCATG+TGG + chr7.2:15859306-15859325 None:intergenic 45.0%
AGCTTAGAAGTCGGTGCATA+TGG - chr7.2:15860221-15860240 MS.gene52683:CDS 45.0%
ATCGCCCATAAACCGTAAGA+AGG + chr7.2:15860174-15860193 None:intergenic 45.0%
ATGGTGTGCATGACTTACTC+GGG - chr7.2:15858514-15858533 MS.gene52683:CDS 45.0%
ATTCCCAAGATCATGGTGAC+AGG + chr7.2:15858997-15859016 None:intergenic 45.0%
CACAAGGTTGACATGCATGA+TGG - chr7.2:15859227-15859246 MS.gene52683:intron 45.0%
CCAGCATAGGGACAATTGTA+TGG + chr7.2:15859149-15859168 None:intergenic 45.0%
CCATACAATTGTCCCTATGC+TGG - chr7.2:15859146-15859165 MS.gene52683:intron 45.0%
CCTAGACTCTGATATCTGCA+AGG + chr7.2:15859065-15859084 None:intergenic 45.0%
CCTTGCAGATATCAGAGTCT+AGG - chr7.2:15859062-15859081 MS.gene52683:intron 45.0%
GATGTATCCTCCAATTCACC+AGG - chr7.2:15858557-15858576 MS.gene52683:CDS 45.0%
GCTCACTGTAAGTGACTCAA+TGG - chr7.2:15859313-15859332 MS.gene52683:intron 45.0%
GCTTAGAAGTCGGTGCATAT+GGG - chr7.2:15860222-15860241 MS.gene52683:CDS 45.0%
GGAGAAAGTGGCTGAATCTT+TGG - chr7.2:15859034-15859053 MS.gene52683:intron 45.0%
!!! AGCCCTTTATTTTTCGGGTG+GGG - chr7.2:15860340-15860359 MS.gene52683:CDS 45.0%
!!! CAAGCCCTTTATTTTTCGGG+TGG - chr7.2:15860338-15860357 MS.gene52683:CDS 45.0%
!!! TTTTTCGGGTGGGGATAAAC+AGG - chr7.2:15860349-15860368 MS.gene52683:CDS 45.0%
AAACTGGAGCTGTACCAAGC+TGG + chr7.2:15860145-15860164 None:intergenic 50.0%
AAGCAGTGCACCTGGTGAAT+TGG + chr7.2:15858570-15858589 None:intergenic 50.0%
CCAAGATCATGGTGACAGGT+GGG + chr7.2:15858993-15859012 None:intergenic 50.0%
CCACCTGTCACCATGATCTT+GGG - chr7.2:15858991-15859010 MS.gene52683:intron 50.0%
GAAATTGCAAGCAGTGCACC+TGG + chr7.2:15858578-15858597 None:intergenic 50.0%
GACAGGTGGGACAGAGATTA+TGG + chr7.2:15858980-15858999 None:intergenic 50.0%
GAGCACTCAGATCCAGCATA+GGG + chr7.2:15859161-15859180 None:intergenic 50.0%
GGATCTGAGTGCTCCGTTAT+GGG - chr7.2:15859167-15859186 MS.gene52683:intron 50.0%
GGGCGCAAACTTATATGGCA+AGG - chr7.2:15860242-15860261 MS.gene52683:CDS 50.0%
TCTGCAACTGCAAGTGGTGT+TGG - chr7.2:15859576-15859595 MS.gene52683:CDS 50.0%
TGCGAATCACCGGTCGTATA+TGG - chr7.2:15860381-15860400 MS.gene52683:CDS 50.0%
TGGATCTGAGTGCTCCGTTA+TGG - chr7.2:15859166-15859185 MS.gene52683:intron 50.0%
! AAACAGTACTGCAGGGGCAT+TGG + chr7.2:15859537-15859556 None:intergenic 50.0%
!! CACTTTGAGGCTTTCCAGCT+TGG - chr7.2:15860128-15860147 MS.gene52683:intron 50.0%
!! GTGTTTGGCTCTGGAGAAAG+TGG - chr7.2:15859022-15859041 MS.gene52683:intron 50.0%
CAGTGCACCTGGTGAATTGG+AGG + chr7.2:15858567-15858586 None:intergenic 55.0%
CCCAAGATCATGGTGACAGG+TGG + chr7.2:15858994-15859013 None:intergenic 55.0%
CCCACCTGTCACCATGATCT+TGG - chr7.2:15858990-15859009 MS.gene52683:intron 55.0%
TGACTGTCGCGTATGCTCCT+AGG + chr7.2:15860272-15860291 None:intergenic 55.0%
! GGAGCACTCAGATCCAGCAT+AGG + chr7.2:15859162-15859181 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 15858354 15860415 15858354 ID=MS.gene52683
chr7.2 mRNA 15858354 15860415 15858354 ID=MS.gene52683.t1;Parent=MS.gene52683
chr7.2 exon 15860191 15860415 15860191 ID=MS.gene52683.t1.exon1;Parent=MS.gene52683.t1
chr7.2 CDS 15860191 15860415 15860191 ID=cds.MS.gene52683.t1;Parent=MS.gene52683.t1
chr7.2 exon 15859450 15859836 15859450 ID=MS.gene52683.t1.exon2;Parent=MS.gene52683.t1
chr7.2 CDS 15859450 15859836 15859450 ID=cds.MS.gene52683.t1;Parent=MS.gene52683.t1
chr7.2 exon 15858354 15858674 15858354 ID=MS.gene52683.t1.exon3;Parent=MS.gene52683.t1
chr7.2 CDS 15858354 15858674 15858354 ID=cds.MS.gene52683.t1;Parent=MS.gene52683.t1
Gene Sequence

>MS.gene52683

ATGGCTCCGGGAGGAGGTATTTTCAAAGAAGTTCTCGAGTCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAAGCCAAGATTAACTGTTCACTTACAAAATCCATTAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCCCTGTCTGCAACAATTTGATGTATCCTCCAATTCACCAGGTGCACTGCTTGCAATTTCTATCTTTTCTTCAAGCGTCTATTCATGTTTCGGGAAAACCTTTTTTCAAATGCGCTATTGCACACATTAAAGTTGTGAAGTTATCATAGTTATCTATTCAATTTATTTGTTAAGCAAGTTACATGATAGCTTTTTGAGTTTAATAAAGTAAAGTGAATATTTTAGAGTCATACCAAGCGATAATAAACAGATAAAAACCTTTAGTTTATAGGTATTTCACTGTCACTTTCTATTGTGAGTTTAGTTCGAATTCCAATAATAGTTACCAATATTGTAATATCCTGCTAAATTTAAAATTTCTAATATTTCTGTTTTGTATGCATTGTGTGTTTCAGTGTCCAAATGGCCATACGTTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCTGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCAAAGCTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCCGTTATGGGTGACATTCCATCTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCATCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTAAGTGACTCAATGGCCTGTTTGTTGATCTGACTGTCTATATCTTCTAGATTAGCATTTTTGCATGTTATGTTTATTATTTAATTTTTAAAAATCTCAGTCATATCTTATAACACGTGACATTTAATTTTACGTTCACAATGGCCATACTTGTTCAATAGAGGCCAAGATTACACTACTTTTTAATAAAAACTTGCTTCTATTGGCTGCTTAACCAATGCCCCTGCAGTACTGTTTAACATTCTCCTTTTTATTATCTGCAACTGCAAGTGGTGTTGGCAGTTTCTTAATTAGTCATGCTTTCTGAGAAGCACCTCACTAAGTATTGAATATAGATCACATGACATACACTTAGGCATGTGCTCTTTTGACTTTTGATGAATAATTTTAAGTTTTAACTCATCCAATTTAGTTGCATGGTTTTATTTGTTTTTTCTTTTTCTGCTTGATCTTCATCTAAATATTTCCTTAGTCTAAAGCTATGGTATATAGGTTCTGCTTTGGTCTTCTGTATTGTGACTGTGACCTCATTTTTAACTTCTAGTCTAAGATTTACAAATGTAACAAATCAGAGGGAGGAAATGCAAAGTAGCTACAACTTGATGGTTTGAAGACGAGAAATCGCATTGGAAAGATAACAAATGTGATACATAAGTCGCTATTTCTAGGGAGCTTATCACATTGATGAACCAACTAATAAATATTTGAAGGAACTCAAACTAACTTTTATTCTAACATAAAACCCCTCTTGCATTTCAAATTCTTTGGCTTTCAGGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTCGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGCGAATCACCGGTCGTATATGGAAAGAAGATTGA
Protein sequence

>MS.gene52683.t1

MAPGGGIFKEVLESHLLTSDYETGKAKSEAKINCSLTKSISVGLNGKHGTSSKNGVHDLLGCPVCNNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED