Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50517.t1 | XP_003625295.1 | 97.4 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 2.00E-184 | 654.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50517.t1 | Q9M2P4 | 78.1 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 1.3e-147 | 523.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50517.t1 | G7KWA3 | 97.4 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 1.4e-184 | 654.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50517 | MS.gene61205 | PPI |
| MS.gene50517 | MS.gene90302 | PPI |
| MS.gene50517 | MS.gene39144 | PPI |
| MS.gene50517 | MS.gene91723 | PPI |
| MS.gene36292 | MS.gene50517 | PPI |
| MS.gene50517 | MS.gene98989 | PPI |
| MS.gene50517 | MS.gene04647 | PPI |
| MS.gene50517 | MS.gene96493 | PPI |
| MS.gene50517 | MS.gene055308 | PPI |
| MS.gene50517 | MS.gene034570 | PPI |
| MS.gene96493 | MS.gene50517 | PPI |
| MS.gene018013 | MS.gene50517 | PPI |
| MS.gene50517 | MS.gene89107 | PPI |
| MS.gene50517 | MS.gene055974 | PPI |
| MS.gene50517 | MS.gene52683 | PPI |
| MS.gene50517 | MS.gene64538 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50517.t1 | MTR_7g093600 | 97.419 | 310 | 8 | 0 | 1 | 310 | 1 | 310 | 0.0 | 637 |
| MS.gene50517.t1 | MTR_1g054335 | 80.323 | 310 | 60 | 1 | 1 | 310 | 1 | 309 | 0.0 | 530 |
| MS.gene50517.t1 | MTR_3g091510 | 72.662 | 278 | 71 | 1 | 37 | 309 | 33 | 310 | 7.70e-156 | 439 |
| MS.gene50517.t1 | MTR_1g008120 | 74.906 | 267 | 67 | 0 | 43 | 309 | 52 | 318 | 1.45e-155 | 438 |
| MS.gene50517.t1 | MTR_8g027520 | 72.263 | 274 | 75 | 1 | 36 | 309 | 22 | 294 | 3.52e-154 | 434 |
| MS.gene50517.t1 | MTR_8g027520 | 72.263 | 274 | 75 | 1 | 36 | 309 | 31 | 303 | 5.59e-154 | 434 |
| MS.gene50517.t1 | MTR_3g017590 | 73.333 | 270 | 68 | 1 | 40 | 309 | 38 | 303 | 4.26e-153 | 431 |
| MS.gene50517.t1 | MTR_7g117415 | 73.432 | 271 | 69 | 1 | 39 | 309 | 44 | 311 | 2.14e-151 | 427 |
| MS.gene50517.t1 | MTR_8g038370 | 69.643 | 280 | 77 | 2 | 38 | 309 | 83 | 362 | 6.18e-149 | 422 |
| MS.gene50517.t1 | MTR_5g076660 | 26.277 | 274 | 188 | 6 | 33 | 306 | 7 | 266 | 4.85e-22 | 95.1 |
| MS.gene50517.t1 | MTR_4g094468 | 29.439 | 214 | 138 | 5 | 58 | 270 | 96 | 297 | 1.71e-21 | 93.2 |
| MS.gene50517.t1 | MTR_7g024290 | 26.794 | 209 | 143 | 4 | 59 | 267 | 11 | 209 | 8.93e-19 | 85.5 |
| MS.gene50517.t1 | MTR_2g038430 | 33.333 | 129 | 81 | 2 | 59 | 184 | 25 | 151 | 1.09e-18 | 85.5 |
| MS.gene50517.t1 | MTR_5g067400 | 25.292 | 257 | 169 | 6 | 58 | 310 | 10 | 247 | 7.06e-18 | 82.8 |
| MS.gene50517.t1 | MTR_5g061290 | 31.061 | 132 | 85 | 4 | 59 | 189 | 18 | 144 | 5.38e-17 | 80.5 |
| MS.gene50517.t1 | MTR_5g076370 | 25.847 | 236 | 161 | 6 | 72 | 307 | 47 | 268 | 2.04e-16 | 79.0 |
| MS.gene50517.t1 | MTR_5g076540 | 28.972 | 214 | 132 | 6 | 59 | 267 | 11 | 209 | 2.30e-16 | 77.4 |
| MS.gene50517.t1 | MTR_7g094390 | 28.743 | 167 | 113 | 3 | 59 | 225 | 172 | 332 | 3.82e-16 | 79.0 |
| MS.gene50517.t1 | MTR_5g076520 | 27.419 | 248 | 161 | 5 | 55 | 302 | 7 | 235 | 8.21e-16 | 77.0 |
| MS.gene50517.t1 | MTR_2g038420 | 29.008 | 131 | 90 | 2 | 59 | 189 | 25 | 152 | 1.06e-14 | 73.9 |
| MS.gene50517.t1 | MTR_5g076820 | 25.498 | 251 | 153 | 8 | 59 | 302 | 19 | 242 | 5.95e-14 | 71.2 |
| MS.gene50517.t1 | MTR_5g076720 | 25.475 | 263 | 174 | 7 | 8 | 267 | 37 | 280 | 7.38e-14 | 72.0 |
| MS.gene50517.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 10 | 234 | 3.51e-13 | 69.3 |
| MS.gene50517.t1 | MTR_1g046650 | 25.714 | 245 | 162 | 6 | 58 | 302 | 41 | 265 | 4.08e-13 | 69.3 |
| MS.gene50517.t1 | MTR_1g046640 | 26.230 | 244 | 160 | 7 | 59 | 302 | 11 | 234 | 5.27e-13 | 68.9 |
| MS.gene50517.t1 | MTR_5g076505 | 27.815 | 151 | 103 | 3 | 75 | 225 | 23 | 167 | 6.42e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50517.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 512 |
| MS.gene50517.t1 | AT3G58040 | 78.065 | 310 | 66 | 2 | 1 | 310 | 1 | 308 | 0.0 | 512 |
| MS.gene50517.t1 | AT2G41980 | 76.774 | 310 | 67 | 2 | 1 | 310 | 1 | 305 | 1.15e-180 | 501 |
| MS.gene50517.t1 | AT3G61790 | 76.357 | 258 | 61 | 0 | 52 | 309 | 53 | 310 | 9.35e-156 | 438 |
| MS.gene50517.t1 | AT4G27880 | 72.348 | 264 | 73 | 0 | 46 | 309 | 48 | 311 | 1.57e-151 | 428 |
| MS.gene50517.t1 | AT5G53360 | 74.877 | 203 | 51 | 0 | 107 | 309 | 15 | 217 | 3.32e-118 | 340 |
| MS.gene50517.t1 | AT5G53360 | 74.877 | 203 | 51 | 0 | 107 | 309 | 15 | 217 | 3.32e-118 | 340 |
| MS.gene50517.t1 | AT3G58040 | 74.146 | 205 | 51 | 2 | 1 | 205 | 1 | 203 | 3.46e-109 | 316 |
| MS.gene50517.t1 | AT3G13672 | 50.495 | 202 | 94 | 2 | 111 | 309 | 13 | 211 | 9.34e-71 | 218 |
| MS.gene50517.t1 | AT3G13672 | 44.978 | 229 | 93 | 3 | 111 | 309 | 13 | 238 | 4.24e-65 | 205 |
| MS.gene50517.t1 | AT5G53360 | 74.286 | 105 | 27 | 0 | 205 | 309 | 60 | 164 | 2.32e-56 | 180 |
| MS.gene50517.t1 | AT5G37870 | 38.281 | 128 | 76 | 2 | 58 | 185 | 41 | 165 | 5.61e-24 | 99.4 |
| MS.gene50517.t1 | AT5G37930 | 37.692 | 130 | 78 | 2 | 58 | 187 | 109 | 235 | 1.79e-21 | 93.6 |
| MS.gene50517.t1 | AT5G37890 | 26.721 | 247 | 166 | 6 | 58 | 302 | 47 | 280 | 2.50e-20 | 89.4 |
| MS.gene50517.t1 | AT5G62800 | 27.734 | 256 | 155 | 8 | 58 | 302 | 39 | 275 | 2.72e-19 | 87.4 |
| MS.gene50517.t1 | AT5G62800 | 28.037 | 214 | 130 | 5 | 58 | 261 | 39 | 238 | 1.81e-18 | 84.7 |
| MS.gene50517.t1 | AT5G37910 | 25.692 | 253 | 177 | 6 | 58 | 309 | 34 | 276 | 4.92e-18 | 82.8 |
| MS.gene50517.t1 | AT1G66620 | 30.968 | 155 | 102 | 2 | 23 | 174 | 2 | 154 | 5.28e-18 | 83.2 |
| MS.gene50517.t1 | AT1G66630 | 36.885 | 122 | 73 | 2 | 58 | 177 | 45 | 164 | 4.90e-16 | 77.4 |
| MS.gene50517.t1 | AT1G66660 | 35.714 | 112 | 70 | 1 | 58 | 169 | 102 | 211 | 1.17e-15 | 77.0 |
| MS.gene50517.t1 | AT1G66650 | 32.593 | 135 | 86 | 3 | 58 | 189 | 82 | 214 | 1.20e-15 | 76.6 |
| MS.gene50517.t1 | AT1G66610 | 33.613 | 119 | 75 | 2 | 7 | 121 | 102 | 220 | 2.55e-14 | 71.6 |
Find 74 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCCTTCTTACGGTTTA+TGG | 0.117780 | 7.3:+61644951 | MS.gene50517:CDS |
| TGCGAATCACCGGTCGTATA+TGG | 0.237311 | 7.3:+61645166 | MS.gene50517:CDS |
| GGAGAAAGTGGCTGAATCTT+TGG | 0.299857 | 7.3:+61643814 | MS.gene50517:CDS |
| GACAGGTGGGACAGAGATTA+TGG | 0.312010 | 7.3:-61643757 | None:intergenic |
| CATATGGGCGCAAACTTATA+TGG | 0.315205 | 7.3:+61645022 | MS.gene50517:CDS |
| AGCTTAGAAGTCGGTGCATA+TGG | 0.322324 | 7.3:+61645006 | MS.gene50517:CDS |
| ATGGCCTTCTTACGGTTTAT+GGG | 0.324454 | 7.3:+61644952 | MS.gene50517:CDS |
| CCCACCTGTCACCATGATCT+TGG | 0.343411 | 7.3:+61643770 | MS.gene50517:CDS |
| GCATTTCTGTTTGCACTTTG+AGG | 0.351473 | 7.3:+61644900 | MS.gene50517:CDS |
| TGTTTAAGCTTTGCATAGTA+AGG | 0.352415 | 7.3:-61643881 | None:intergenic |
| TGGATCTGAGTGCTCCGTTA+TGG | 0.353234 | 7.3:+61643946 | MS.gene50517:CDS |
| ACCATGATCTTGGGAATATA+AGG | 0.354435 | 7.3:+61643780 | MS.gene50517:CDS |
| CACTTTGAGGCTTTCCAGCT+TGG | 0.356658 | 7.3:+61644913 | MS.gene50517:CDS |
| TCCACTAGTGTTGGATTGAA+TGG | 0.361198 | 7.3:+61643248 | MS.gene50517:CDS |
| GAATATAAGGTGTTTGGCTC+TGG | 0.367722 | 7.3:+61643793 | MS.gene50517:CDS |
| TTGACTTCAGATTATGAAAC+AGG | 0.369439 | 7.3:+61643182 | MS.gene50517:CDS |
| TGTAAGTGAACAGTTAATCT+TGG | 0.386090 | 7.3:-61643222 | None:intergenic |
| GGATCTGAGTGCTCCGTTAT+GGG | 0.399413 | 7.3:+61643947 | MS.gene50517:CDS |
| GAACATAACGTATGGCCATT+TGG | 0.409073 | 7.3:-61643716 | None:intergenic |
| TCTTGGGAATATAAGGTGTT+TGG | 0.412899 | 7.3:+61643787 | MS.gene50517:CDS |
| CCACCTGTCACCATGATCTT+GGG | 0.439936 | 7.3:+61643771 | MS.gene50517:CDS |
| CCATACAATTGTCCCTATGC+TGG | 0.460910 | 7.3:+61643926 | MS.gene50517:CDS |
| CTTACAAAATCCACTAGTGT+TGG | 0.467534 | 7.3:+61643239 | MS.gene50517:CDS |
| TACATCAAATTGTTGCAGAC+AGG | 0.476960 | 7.3:-61643320 | None:intergenic |
| AAGCAGTGCACCTGGTGAAT+TGG | 0.478324 | 7.3:-61643347 | None:intergenic |
| CCTTGCAGATATCAGAGTCT+AGG | 0.480797 | 7.3:+61643842 | MS.gene50517:CDS |
| CCAGCATAGGGACAATTGTA+TGG | 0.489704 | 7.3:-61643926 | None:intergenic |
| ATCTTCTTTCCATATACGAC+CGG | 0.495873 | 7.3:-61645175 | None:intergenic |
| TCAGAAATGGCTCCGGGAGG+AGG | 0.504929 | 7.3:+61643128 | None:intergenic |
| TTATATGGCAAGGAATTCCT+AGG | 0.506193 | 7.3:+61645037 | MS.gene50517:CDS |
| TACAATTTGAACATAACGTA+TGG | 0.506717 | 7.3:-61643724 | None:intergenic |
| AAAGTTAGAGATAGTCAAGA+TGG | 0.510900 | 7.3:+61645081 | MS.gene50517:CDS |
| TGACTGTCGCGTATGCTCCT+AGG | 0.511842 | 7.3:-61645054 | None:intergenic |
| ATCTCTTGTTGATCATCTCA+AGG | 0.513200 | 7.3:+61643979 | MS.gene50517:CDS |
| ATCGGATCAGAAATGGCTCC+GGG | 0.513632 | 7.3:+61643122 | None:intergenic |
| CAGTGCACCTGGTGAATTGG+AGG | 0.518998 | 7.3:-61643344 | None:intergenic |
| ACCTTATATTCCCAAGATCA+TGG | 0.520727 | 7.3:-61643781 | None:intergenic |
| GATCGGATCAGAAATGGCTC+CGG | 0.522089 | 7.3:+61643121 | None:intergenic |
| GTTTAAGCTTTGCATAGTAA+GGG | 0.527406 | 7.3:-61643880 | None:intergenic |
| AAACTGGAGCTGTACCAAGC+TGG | 0.527478 | 7.3:-61644927 | None:intergenic |
| CTTAAACATGAGCAAAATTG+TGG | 0.529347 | 7.3:+61643896 | MS.gene50517:CDS |
| TCCATTCAATCCAACACTAG+TGG | 0.529508 | 7.3:-61643249 | None:intergenic |
| TGTGTGTTTCAGTGTCCAAA+TGG | 0.537348 | 7.3:+61643701 | MS.gene50517:intron |
| TTGAGATGATCAACAAGAGA+TGG | 0.537565 | 7.3:-61643977 | None:intergenic |
| TTTGACATATCGATGATTGA+AGG | 0.543895 | 7.3:-61644035 | None:intergenic |
| AATGGTGTGCATGACTTACT+CGG | 0.545764 | 7.3:+61643293 | MS.gene50517:CDS |
| CTTGCAGATATCAGAGTCTA+GGG | 0.551230 | 7.3:+61643843 | MS.gene50517:CDS |
| CACGGAACTAGTTCAAAGAA+TGG | 0.551902 | 7.3:+61643275 | MS.gene50517:CDS |
| GTGTTTGGCTCTGGAGAAAG+TGG | 0.555229 | 7.3:+61643802 | MS.gene50517:CDS |
| AGATGGAATGTCACCCATAA+CGG | 0.557116 | 7.3:-61643960 | None:intergenic |
| ATTCCCAAGATCATGGTGAC+AGG | 0.559471 | 7.3:-61643774 | None:intergenic |
| CCCAAGATCATGGTGACAGG+TGG | 0.563063 | 7.3:-61643771 | None:intergenic |
| GAGTTGAAATTGCGAATCAC+CGG | 0.566590 | 7.3:+61645156 | MS.gene50517:CDS |
| ATCGCCCATAAACCGTAAGA+AGG | 0.570793 | 7.3:-61644956 | None:intergenic |
| ACATCAAATTGTTGCAGACA+GGG | 0.575889 | 7.3:-61643319 | None:intergenic |
| CACAAGGTTGACATGCATGA+TGG | 0.576711 | 7.3:+61644007 | MS.gene50517:CDS |
| TTCAGTTACAGCTTAGAAGT+CGG | 0.578117 | 7.3:+61644997 | MS.gene50517:CDS |
| TCTTTGAAAATACCTCCTCC+CGG | 0.578930 | 7.3:-61643140 | None:intergenic |
| TTTCATAATCTGAAGTCAAG+AGG | 0.592761 | 7.3:-61643178 | None:intergenic |
| GCTTAGAAGTCGGTGCATAT+GGG | 0.598441 | 7.3:+61645007 | MS.gene50517:CDS |
| GAGCACTCAGATCCAGCATA+GGG | 0.606589 | 7.3:-61643938 | None:intergenic |
| GATGTATCCTCCAATTCACC+AGG | 0.614890 | 7.3:+61643337 | MS.gene50517:CDS |
| GGGCGCAAACTTATATGGCA+AGG | 0.619069 | 7.3:+61645027 | MS.gene50517:CDS |
| GGAGCACTCAGATCCAGCAT+AGG | 0.620419 | 7.3:-61643939 | None:intergenic |
| CCAAGATCATGGTGACAGGT+GGG | 0.628103 | 7.3:-61643770 | None:intergenic |
| AAGATGGACTAATAATTCAG+AGG | 0.639261 | 7.3:+61645097 | MS.gene50517:CDS |
| TTCAGATTATGAAACAGGCA+AGG | 0.651216 | 7.3:+61643187 | MS.gene50517:CDS |
| GTTGGATTGAATGGAAAGCA+CGG | 0.653878 | 7.3:+61643257 | MS.gene50517:CDS |
| ATGGTGTGCATGACTTACTC+GGG | 0.659438 | 7.3:+61643294 | MS.gene50517:CDS |
| CCTAGACTCTGATATCTGCA+AGG | 0.660946 | 7.3:-61643842 | None:intergenic |
| TCATCTCAAGGATGAACACA+AGG | 0.664179 | 7.3:+61643991 | MS.gene50517:CDS |
| ATGAAGTTGAAAATGCCACA+TGG | 0.708825 | 7.3:+61644068 | MS.gene50517:CDS |
| ACTTACAGTGAGCATCCATG+TGG | 0.726222 | 7.3:-61644083 | None:intergenic |
| GGATCAGAAATGGCTCCGGG+AGG | 0.729551 | 7.3:+61643125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTCAAATATTTATTAGT+TGG | - | chr7.3:61644797-61644816 | None:intergenic | 15.0% |
| !!! | TTAGAAATTTTAAATTTAGC+AGG | - | chr7.3:61643661-61643680 | None:intergenic | 15.0% |
| !! | ATTAAAAAGTAGTGTAATCT+TGG | - | chr7.3:61644272-61644291 | None:intergenic | 20.0% |
| !!! | ACAATATTGGTAACTATTAT+TGG | - | chr7.3:61643633-61643652 | None:intergenic | 20.0% |
| !!! | ATTTAATTTTACGTTCACAA+TGG | + | chr7.3:61644221-61644240 | MS.gene50517:intron | 20.0% |
| !!! | GATAAAAACCTTTAGTTTAT+AGG | + | chr7.3:61643567-61643586 | MS.gene50517:intron | 20.0% |
| !!! | TAATAAAAACTTGCTTCTAT+TGG | + | chr7.3:61644288-61644307 | MS.gene50517:intron | 20.0% |
| ! | ATAAAACCATGCAACTAAAT+TGG | - | chr7.3:61644511-61644530 | None:intergenic | 25.0% |
| ! | GTGAAATACCTATAAACTAA+AGG | - | chr7.3:61643578-61643597 | None:intergenic | 25.0% |
| ! | TACAAATGTAACAAATCAGA+GGG | + | chr7.3:61644658-61644677 | MS.gene50517:intron | 25.0% |
| ! | TACAATTTGAACATAACGTA+TGG | - | chr7.3:61643727-61643746 | None:intergenic | 25.0% |
| ! | TAGACTAGAAGTTAAAAATG+AGG | - | chr7.3:61644633-61644652 | None:intergenic | 25.0% |
| ! | TCTATATTCAATACTTAGTG+AGG | - | chr7.3:61644421-61644440 | None:intergenic | 25.0% |
| ! | TCTATTGAACAAAACAAGTA+TGG | - | chr7.3:61644247-61644266 | None:intergenic | 25.0% |
| ! | TTACAAATGTAACAAATCAG+AGG | + | chr7.3:61644657-61644676 | MS.gene50517:intron | 25.0% |
| ! | TTAGCAGGATATTACAATAT+TGG | - | chr7.3:61643646-61643665 | None:intergenic | 25.0% |
| ! | TTTATCTGTTTATTATCGCT+TGG | - | chr7.3:61643553-61643572 | None:intergenic | 25.0% |
| !! | AAAGAATTTGAAATGCAAGA+GGG | - | chr7.3:61644851-61644870 | None:intergenic | 25.0% |
| !!! | ATACTTGTTTTGTTCAATAG+AGG | + | chr7.3:61644246-61644265 | MS.gene50517:intron | 25.0% |
| AAAGTTAGAGATAGTCAAGA+TGG | + | chr7.3:61645081-61645100 | MS.gene50517:CDS | 30.0% | |
| CTCTTGCATTTCAAATTCTT+TGG | + | chr7.3:61644850-61644869 | MS.gene50517:intron | 30.0% | |
| CTTAAACATGAGCAAAATTG+TGG | + | chr7.3:61643896-61643915 | MS.gene50517:CDS | 30.0% | |
| GTTTAAGCTTTGCATAGTAA+GGG | - | chr7.3:61643883-61643902 | None:intergenic | 30.0% | |
| TGAATAGCGCATTTGAAAAA+AGG | - | chr7.3:61643419-61643438 | None:intergenic | 30.0% | |
| TGCAGTTGCAGATAATAAAA+AGG | - | chr7.3:61644353-61644372 | None:intergenic | 30.0% | |
| TGTAAGTGAACAGTTAATCT+TGG | - | chr7.3:61643225-61643244 | None:intergenic | 30.0% | |
| TGTTTAAGCTTTGCATAGTA+AGG | - | chr7.3:61643884-61643903 | None:intergenic | 30.0% | |
| TTGACTTCAGATTATGAAAC+AGG | + | chr7.3:61643182-61643201 | MS.gene50517:CDS | 30.0% | |
| TTTGACATATCGATGATTGA+AGG | - | chr7.3:61644038-61644057 | None:intergenic | 30.0% | |
| ! | AAGAATTTGAAATGCAAGAG+GGG | - | chr7.3:61644850-61644869 | None:intergenic | 30.0% |
| ! | AGTCTAAAGCTATGGTATAT+AGG | + | chr7.3:61644575-61644594 | MS.gene50517:intron | 30.0% |
| ! | ATTTCCTTAGTCTAAAGCTA+TGG | + | chr7.3:61644567-61644586 | MS.gene50517:intron | 30.0% |
| ! | CAAAGAATTTGAAATGCAAG+AGG | - | chr7.3:61644852-61644871 | None:intergenic | 30.0% |
| ! | TTTCATAATCTGAAGTCAAG+AGG | - | chr7.3:61643181-61643200 | None:intergenic | 30.0% |
| !! | AAGATGGACTAATAATTCAG+AGG | + | chr7.3:61645097-61645116 | MS.gene50517:CDS | 30.0% |
| !! | ATACATAAGTCGCTATTTCT+AGG | + | chr7.3:61644751-61644770 | MS.gene50517:intron | 30.0% |
| !! | TACATAAGTCGCTATTTCTA+GGG | + | chr7.3:61644752-61644771 | MS.gene50517:intron | 30.0% |
| !! | TATACCATAGCTTTAGACTA+AGG | - | chr7.3:61644574-61644593 | None:intergenic | 30.0% |
| !! | TTTCAAATTCTTTGGCTTTC+AGG | + | chr7.3:61644858-61644877 | MS.gene50517:intron | 30.0% |
| !!! | AATCAAGCCCTTTATTTTTC+GGG | + | chr7.3:61645120-61645139 | MS.gene50517:CDS | 30.0% |
| !!! | GAATCAAGCCCTTTATTTTT+CGG | + | chr7.3:61645119-61645138 | MS.gene50517:CDS | 30.0% |
| !!! | TTTCAGGTTTTCAATTGCTA+TGG | + | chr7.3:61644874-61644893 | MS.gene50517:intron | 30.0% |
| AAATGTAACAAATCAGAGGG+AGG | + | chr7.3:61644661-61644680 | MS.gene50517:intron | 35.0% | |
| AATGTTAAACAGTACTGCAG+GGG | - | chr7.3:61644328-61644347 | None:intergenic | 35.0% | |
| ACATCAAATTGTTGCAGACA+GGG | - | chr7.3:61643322-61643341 | None:intergenic | 35.0% | |
| ACCATGATCTTGGGAATATA+AGG | + | chr7.3:61643780-61643799 | MS.gene50517:CDS | 35.0% | |
| ACCTTATATTCCCAAGATCA+TGG | - | chr7.3:61643784-61643803 | None:intergenic | 35.0% | |
| ACTCATCCAATTTAGTTGCA+TGG | + | chr7.3:61644502-61644521 | MS.gene50517:intron | 35.0% | |
| AGAATGTTAAACAGTACTGC+AGG | - | chr7.3:61644330-61644349 | None:intergenic | 35.0% | |
| AGATCACATGACATACACTT+AGG | + | chr7.3:61644438-61644457 | MS.gene50517:intron | 35.0% | |
| ATCTCTTGTTGATCATCTCA+AGG | + | chr7.3:61643979-61643998 | MS.gene50517:CDS | 35.0% | |
| ATCTTCTTTCCATATACGAC+CGG | - | chr7.3:61645178-61645197 | None:intergenic | 35.0% | |
| ATGAAGTTGAAAATGCCACA+TGG | + | chr7.3:61644068-61644087 | MS.gene50517:CDS | 35.0% | |
| ATGGTATATAGGTTCTGCTT+TGG | + | chr7.3:61644586-61644605 | MS.gene50517:intron | 35.0% | |
| CTTACAAAATCCACTAGTGT+TGG | + | chr7.3:61643239-61643258 | MS.gene50517:CDS | 35.0% | |
| GAATGTTAAACAGTACTGCA+GGG | - | chr7.3:61644329-61644348 | None:intergenic | 35.0% | |
| TACATCAAATTGTTGCAGAC+AGG | - | chr7.3:61643323-61643342 | None:intergenic | 35.0% | |
| TCAAGCGTCTATTCATGTTT+CGG | + | chr7.3:61643388-61643407 | MS.gene50517:intron | 35.0% | |
| TTATATGGCAAGGAATTCCT+AGG | + | chr7.3:61645037-61645056 | MS.gene50517:CDS | 35.0% | |
| TTATTATCTGCAACTGCAAG+TGG | + | chr7.3:61644355-61644374 | MS.gene50517:intron | 35.0% | |
| TTCAGATTATGAAACAGGCA+AGG | + | chr7.3:61643187-61643206 | MS.gene50517:CDS | 35.0% | |
| TTCAGTTACAGCTTAGAAGT+CGG | + | chr7.3:61644997-61645016 | MS.gene50517:CDS | 35.0% | |
| TTGAGATGATCAACAAGAGA+TGG | - | chr7.3:61643980-61643999 | None:intergenic | 35.0% | |
| ! | CAGTTTTTATGGCCTTCTTA+CGG | + | chr7.3:61644944-61644963 | MS.gene50517:CDS | 35.0% |
| ! | TCTTGGGAATATAAGGTGTT+TGG | + | chr7.3:61643787-61643806 | MS.gene50517:CDS | 35.0% |
| ! | TGGCATTTTCAACTTCATGT+GGG | - | chr7.3:61644066-61644085 | None:intergenic | 35.0% |
| AATGGTGTGCATGACTTACT+CGG | + | chr7.3:61643293-61643312 | MS.gene50517:CDS | 40.0% | |
| AGACAGTCAGATCAACAAAC+AGG | - | chr7.3:61644119-61644138 | None:intergenic | 40.0% | |
| AGATGGAATGTCACCCATAA+CGG | - | chr7.3:61643963-61643982 | None:intergenic | 40.0% | |
| ATCCCCACCCGAAAAATAAA+GGG | - | chr7.3:61645130-61645149 | None:intergenic | 40.0% | |
| ATGGCCTTCTTACGGTTTAT+GGG | + | chr7.3:61644952-61644971 | MS.gene50517:CDS | 40.0% | |
| CAAGCGTCTATTCATGTTTC+GGG | + | chr7.3:61643389-61643408 | MS.gene50517:intron | 40.0% | |
| CACGGAACTAGTTCAAAGAA+TGG | + | chr7.3:61643275-61643294 | MS.gene50517:CDS | 40.0% | |
| CATATGGGCGCAAACTTATA+TGG | + | chr7.3:61645022-61645041 | MS.gene50517:CDS | 40.0% | |
| CGTAAGAAGGCCATAAAAAC+TGG | - | chr7.3:61644946-61644965 | None:intergenic | 40.0% | |
| CTTGCAGATATCAGAGTCTA+GGG | + | chr7.3:61643843-61643862 | MS.gene50517:CDS | 40.0% | |
| GAACATAACGTATGGCCATT+TGG | - | chr7.3:61643719-61643738 | None:intergenic | 40.0% | |
| GAGTTGAAATTGCGAATCAC+CGG | + | chr7.3:61645156-61645175 | MS.gene50517:CDS | 40.0% | |
| GCAAAGTAGCTACAACTTGA+TGG | + | chr7.3:61644688-61644707 | MS.gene50517:intron | 40.0% | |
| GCATTTCTGTTTGCACTTTG+AGG | + | chr7.3:61644900-61644919 | MS.gene50517:CDS | 40.0% | |
| GTTGGATTGAATGGAAAGCA+CGG | + | chr7.3:61643257-61643276 | MS.gene50517:CDS | 40.0% | |
| TATCCCCACCCGAAAAATAA+AGG | - | chr7.3:61645131-61645150 | None:intergenic | 40.0% | |
| TATGGCCTTCTTACGGTTTA+TGG | + | chr7.3:61644951-61644970 | MS.gene50517:CDS | 40.0% | |
| TCATCTCAAGGATGAACACA+AGG | + | chr7.3:61643991-61644010 | MS.gene50517:CDS | 40.0% | |
| TCCATTCAATCCAACACTAG+TGG | - | chr7.3:61643252-61643271 | None:intergenic | 40.0% | |
| TGTGTGTTTCAGTGTCCAAA+TGG | + | chr7.3:61643701-61643720 | MS.gene50517:intron | 40.0% | |
| TTGAAGACGAGAAATCGCAT+TGG | + | chr7.3:61644712-61644731 | MS.gene50517:intron | 40.0% | |
| ! | GAATATAAGGTGTTTGGCTC+TGG | + | chr7.3:61643793-61643812 | MS.gene50517:CDS | 40.0% |
| ! | GTGGCATTTTCAACTTCATG+TGG | - | chr7.3:61644067-61644086 | None:intergenic | 40.0% |
| ! | TCCACTAGTGTTGGATTGAA+TGG | + | chr7.3:61643248-61643267 | MS.gene50517:CDS | 40.0% |
| ! | TCTTTGAAAATACCTCCTCC+CGG | - | chr7.3:61643143-61643162 | None:intergenic | 40.0% |
| ! | TGGTACAGCTCCAGTTTTTA+TGG | + | chr7.3:61644933-61644952 | MS.gene50517:CDS | 40.0% |
| !!! | AAGCCCTTTATTTTTCGGGT+GGG | + | chr7.3:61645124-61645143 | MS.gene50517:CDS | 40.0% |
| ACTTACAGTGAGCATCCATG+TGG | - | chr7.3:61644086-61644105 | None:intergenic | 45.0% | |
| AGCTTAGAAGTCGGTGCATA+TGG | + | chr7.3:61645006-61645025 | MS.gene50517:CDS | 45.0% | |
| ATCGCCCATAAACCGTAAGA+AGG | - | chr7.3:61644959-61644978 | None:intergenic | 45.0% | |
| ATGGTGTGCATGACTTACTC+GGG | + | chr7.3:61643294-61643313 | MS.gene50517:CDS | 45.0% | |
| ATTCCCAAGATCATGGTGAC+AGG | - | chr7.3:61643777-61643796 | None:intergenic | 45.0% | |
| CACAAGGTTGACATGCATGA+TGG | + | chr7.3:61644007-61644026 | MS.gene50517:CDS | 45.0% | |
| CCAGCATAGGGACAATTGTA+TGG | - | chr7.3:61643929-61643948 | None:intergenic | 45.0% | |
| CCATACAATTGTCCCTATGC+TGG | + | chr7.3:61643926-61643945 | MS.gene50517:CDS | 45.0% | |
| CCTAGACTCTGATATCTGCA+AGG | - | chr7.3:61643845-61643864 | None:intergenic | 45.0% | |
| CCTTGCAGATATCAGAGTCT+AGG | + | chr7.3:61643842-61643861 | MS.gene50517:CDS | 45.0% | |
| GATGTATCCTCCAATTCACC+AGG | + | chr7.3:61643337-61643356 | MS.gene50517:CDS | 45.0% | |
| GCTCACTGTAAGTGACTCAA+TGG | + | chr7.3:61644093-61644112 | MS.gene50517:intron | 45.0% | |
| GCTTAGAAGTCGGTGCATAT+GGG | + | chr7.3:61645007-61645026 | MS.gene50517:CDS | 45.0% | |
| GGAGAAAGTGGCTGAATCTT+TGG | + | chr7.3:61643814-61643833 | MS.gene50517:CDS | 45.0% | |
| !!! | AGCCCTTTATTTTTCGGGTG+GGG | + | chr7.3:61645125-61645144 | MS.gene50517:CDS | 45.0% |
| !!! | CAAGCCCTTTATTTTTCGGG+TGG | + | chr7.3:61645123-61645142 | MS.gene50517:CDS | 45.0% |
| !!! | TTTTTCGGGTGGGGATAAAC+AGG | + | chr7.3:61645134-61645153 | MS.gene50517:CDS | 45.0% |
| AAACTGGAGCTGTACCAAGC+TGG | - | chr7.3:61644930-61644949 | None:intergenic | 50.0% | |
| AAGCAGTGCACCTGGTGAAT+TGG | - | chr7.3:61643350-61643369 | None:intergenic | 50.0% | |
| CCAAGATCATGGTGACAGGT+GGG | - | chr7.3:61643773-61643792 | None:intergenic | 50.0% | |
| CCACCTGTCACCATGATCTT+GGG | + | chr7.3:61643771-61643790 | MS.gene50517:CDS | 50.0% | |
| GAAATTGCAAGCAGTGCACC+TGG | - | chr7.3:61643358-61643377 | None:intergenic | 50.0% | |
| GACAGGTGGGACAGAGATTA+TGG | - | chr7.3:61643760-61643779 | None:intergenic | 50.0% | |
| GAGCACTCAGATCCAGCATA+GGG | - | chr7.3:61643941-61643960 | None:intergenic | 50.0% | |
| GGATCTGAGTGCTCCGTTAT+GGG | + | chr7.3:61643947-61643966 | MS.gene50517:CDS | 50.0% | |
| GGGCGCAAACTTATATGGCA+AGG | + | chr7.3:61645027-61645046 | MS.gene50517:CDS | 50.0% | |
| TCTGCAACTGCAAGTGGTGT+TGG | + | chr7.3:61644361-61644380 | MS.gene50517:intron | 50.0% | |
| TGCGAATCACCGGTCGTATA+TGG | + | chr7.3:61645166-61645185 | MS.gene50517:CDS | 50.0% | |
| TGGATCTGAGTGCTCCGTTA+TGG | + | chr7.3:61643946-61643965 | MS.gene50517:CDS | 50.0% | |
| ! | AAACAGTACTGCAGGGGCAT+TGG | - | chr7.3:61644322-61644341 | None:intergenic | 50.0% |
| !! | CACTTTGAGGCTTTCCAGCT+TGG | + | chr7.3:61644913-61644932 | MS.gene50517:CDS | 50.0% |
| !! | GTGTTTGGCTCTGGAGAAAG+TGG | + | chr7.3:61643802-61643821 | MS.gene50517:CDS | 50.0% |
| CAGTGCACCTGGTGAATTGG+AGG | - | chr7.3:61643347-61643366 | None:intergenic | 55.0% | |
| CCCAAGATCATGGTGACAGG+TGG | - | chr7.3:61643774-61643793 | None:intergenic | 55.0% | |
| CCCACCTGTCACCATGATCT+TGG | + | chr7.3:61643770-61643789 | MS.gene50517:CDS | 55.0% | |
| TGACTGTCGCGTATGCTCCT+AGG | - | chr7.3:61645057-61645076 | None:intergenic | 55.0% | |
| ! | GGAGCACTCAGATCCAGCAT+AGG | - | chr7.3:61643942-61643961 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 61643134 | 61645200 | 61643134 | ID=MS.gene50517 |
| chr7.3 | mRNA | 61643134 | 61645200 | 61643134 | ID=MS.gene50517.t1;Parent=MS.gene50517 |
| chr7.3 | exon | 61643134 | 61643358 | 61643134 | ID=MS.gene50517.t1.exon1;Parent=MS.gene50517.t1 |
| chr7.3 | CDS | 61643134 | 61643358 | 61643134 | ID=cds.MS.gene50517.t1;Parent=MS.gene50517.t1 |
| chr7.3 | exon | 61643713 | 61644099 | 61643713 | ID=MS.gene50517.t1.exon2;Parent=MS.gene50517.t1 |
| chr7.3 | CDS | 61643713 | 61644099 | 61643713 | ID=cds.MS.gene50517.t1;Parent=MS.gene50517.t1 |
| chr7.3 | exon | 61644880 | 61645200 | 61644880 | ID=MS.gene50517.t1.exon3;Parent=MS.gene50517.t1 |
| chr7.3 | CDS | 61644880 | 61645200 | 61644880 | ID=cds.MS.gene50517.t1;Parent=MS.gene50517.t1 |
| Gene Sequence |
| Protein sequence |
