AlfalfaGEDB | MS.gene91723

M. sativa cultivar XinJiangDaYe / MS.gene91723

KEGG: K10403
GO: GO:0000166 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008144 GO:0008150 GO:0009987 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00225.26 PF12836.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91723.t1	XP_003623088.2	96.3	535	20	0	1	535	103	637	1.00E-289	1005.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91723.t1	Q5E913	57.6	538	201	8	1	527	98	619	2.6e-148	526.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91723.t1	G7L4H2	96.3	535	20	0	1	535	103	637	7.4e-290	1005.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049989	MS.gene91723	0.832906	7.24E-56	-1.69E-46
MS.gene050297	MS.gene91723	0.803673	3.12E-49	-1.69E-46
MS.gene051816	MS.gene91723	0.803911	2.78E-49	-1.69E-46
MS.gene051955	MS.gene91723	0.84561	3.65E-59	-1.69E-46
MS.gene052367	MS.gene91723	0.839797	1.28E-57	-1.69E-46
MS.gene053348	MS.gene91723	0.815183	1.05E-51	-1.69E-46
MS.gene053416	MS.gene91723	0.81368	2.26E-51	-1.69E-46
MS.gene053417	MS.gene91723	0.815799	7.68E-52	-1.69E-46
MS.gene054551	MS.gene91723	0.812647	3.82E-51	-1.69E-46
MS.gene054593	MS.gene91723	0.810563	1.08E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005189	MS.gene91723	PPI
MS.gene018013	MS.gene91723	PPI
MS.gene034570	MS.gene91723	PPI
MS.gene04647	MS.gene91723	PPI
MS.gene055974	MS.gene91723	PPI
MS.gene39144	MS.gene91723	PPI
MS.gene44056	MS.gene91723	PPI
MS.gene50517	MS.gene91723	PPI
MS.gene52620	MS.gene91723	PPI
MS.gene91547	MS.gene91723	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91723.t1	MTR_7g061020	96.262	535	20	0	1	535	103	637	0.0	1065
MS.gene91723.t1	MTR_6g053680	38.199	322	184	6	1	321	74	381	2.96e-56	202
MS.gene91723.t1	MTR_6g053680	39.837	123	65	4	409	527	783	900	2.37e-17	86.3
MS.gene91723.t1	MTR_3g100270	35.974	303	155	7	1	267	72	371	2.63e-50	186
MS.gene91723.t1	MTR_5g066320	37.456	283	142	6	1	251	80	359	2.61e-49	183
MS.gene91723.t1	MTR_1g067630	37.319	276	148	6	1	251	124	399	3.91e-48	180
MS.gene91723.t1	MTR_1g018940	37.248	298	137	9	1	251	71	365	1.49e-47	178
MS.gene91723.t1	MTR_3g102170	35.932	295	145	9	1	251	71	365	2.18e-46	174
MS.gene91723.t1	MTR_2g096010	35.273	275	154	5	1	251	119	393	4.87e-45	171
MS.gene91723.t1	MTR_4g094882	35.667	300	143	8	1	251	75	373	6.49e-45	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91723.t1	AT5G02370	56.851	489	172	12	1	472	98	564	3.01e-166	483
MS.gene91723.t1	AT3G49650	41.797	256	138	4	8	253	95	349	2.55e-50	185
MS.gene91723.t1	AT5G23910	41.870	246	133	6	1	245	78	314	8.81e-50	182
MS.gene91723.t1	AT5G23910	52.381	84	40	0	443	526	618	701	2.84e-19	92.0
MS.gene91723.t1	AT5G23910	41.870	246	133	6	1	245	82	318	9.95e-50	182
MS.gene91723.t1	AT5G23910	52.381	84	40	0	443	526	622	705	3.07e-19	92.0
MS.gene91723.t1	AT5G60930	36.054	294	145	6	1	251	69	362	1.90e-49	184
MS.gene91723.t1	AT5G60930	36.054	294	145	6	1	251	69	362	2.05e-49	184
MS.gene91723.t1	AT5G60930	36.054	294	145	6	1	251	69	362	2.60e-49	184
MS.gene91723.t1	AT5G47820	37.124	299	140	9	1	251	74	372	3.39e-49	183

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Find 117 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAACCTCATAGACT+TGG	0.606022	7.2:+38899317	MS.gene91723:CDS
AAACTTGAGATAGTCCCCTG+AGG	0.791662	7.2:-38899131	None:intergenic
AAAGCTTGGCTAGAATCAAG+AGG	0.648838	7.2:+38900166	MS.gene91723:CDS
AAGAAAGGGTTGCAGGAAAA+TGG	0.324293	7.2:+38901313	MS.gene91723:CDS
AAGAGCTCACAACAAAGACT+TGG	0.567277	7.2:+38900196	MS.gene91723:CDS
AAGATGGCCATATTCACCTC+AGG	0.507995	7.2:+38899115	MS.gene91723:CDS
AAGCACTCCATGACTCCTGC+TGG	0.523110	7.2:-38899241	None:intergenic
AAGCTCAACATACTACTGAG+AGG	0.692590	7.2:+38900332	MS.gene91723:CDS
AATAGAAGAAGCTGCAATGA+AGG	0.456986	7.2:+38899435	MS.gene91723:CDS
AATGCTACTGTGTTTGCTTA+TGG	0.345908	7.2:+38897768	MS.gene91723:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGAACCTCATAGACT+TGG	+	chr7.2:38899317-38899336	MS.gene91723:CDS	30.0%
AATTCTCTTGGTCATTCTAA+TGG	-	chr7.2:38899744-38899763	None:intergenic	30.0%
ACATCATTATATGATTCCAG+TGG	-	chr7.2:38900769-38900788	None:intergenic	30.0%
ACTAGTTATGACATGAGTAA+TGG	-	chr7.2:38899950-38899969	None:intergenic	30.0%
AGAAGAAAGTCCACTAAAAT+CGG	+	chr7.2:38902088-38902107	MS.gene91723:CDS	30.0%
AGAGAGATTTAGCTGTAAAA+CGG	+	chr7.2:38898459-38898478	MS.gene91723:intron	30.0%
AGCTCAAATTTCATACTATG+AGG	+	chr7.2:38899026-38899045	MS.gene91723:CDS	30.0%
ATCTGTTCATACTGTTAGTT+TGG	+	chr7.2:38900054-38900073	MS.gene91723:CDS	30.0%
CATCCCTAATATACAAGATT+AGG	-	chr7.2:38898694-38898713	None:intergenic	30.0%
CATTATTGCACTGTTCTTTA+GGG	+	chr7.2:38901695-38901714	MS.gene91723:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	38897741	38902411	38897741	ID=MS.gene91723
chr7.2	mRNA	38897741	38902411	38897741	ID=MS.gene91723.t1;Parent=MS.gene91723
chr7.2	exon	38897741	38897824	38897741	ID=MS.gene91723.t1.exon1;Parent=MS.gene91723.t1
chr7.2	CDS	38897741	38897824	38897741	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38898949	38899342	38898949	ID=MS.gene91723.t1.exon2;Parent=MS.gene91723.t1
chr7.2	CDS	38898949	38899342	38898949	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38899424	38899629	38899424	ID=MS.gene91723.t1.exon3;Parent=MS.gene91723.t1
chr7.2	CDS	38899424	38899629	38899424	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38900034	38900353	38900034	ID=MS.gene91723.t1.exon4;Parent=MS.gene91723.t1
chr7.2	CDS	38900034	38900353	38900034	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38900447	38900510	38900447	ID=MS.gene91723.t1.exon5;Parent=MS.gene91723.t1
chr7.2	CDS	38900447	38900510	38900447	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38900703	38900793	38900703	ID=MS.gene91723.t1.exon6;Parent=MS.gene91723.t1
chr7.2	CDS	38900703	38900793	38900703	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38901170	38901378	38901170	ID=MS.gene91723.t1.exon7;Parent=MS.gene91723.t1
chr7.2	CDS	38901170	38901378	38901170	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38901463	38901509	38901463	ID=MS.gene91723.t1.exon8;Parent=MS.gene91723.t1
chr7.2	CDS	38901463	38901509	38901463	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38901608	38901629	38901608	ID=MS.gene91723.t1.exon9;Parent=MS.gene91723.t1
chr7.2	CDS	38901608	38901629	38901608	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38902047	38902109	38902047	ID=MS.gene91723.t1.exon10;Parent=MS.gene91723.t1
chr7.2	CDS	38902047	38902109	38902047	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38902200	38902238	38902200	ID=MS.gene91723.t1.exon11;Parent=MS.gene91723.t1
chr7.2	CDS	38902200	38902238	38902200	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1
chr7.2	exon	38902340	38902411	38902340	ID=MS.gene91723.t1.exon12;Parent=MS.gene91723.t1
chr7.2	CDS	38902340	38902411	38902340	ID=cds.MS.gene91723.t1;Parent=MS.gene91723.t1

Gene Sequence

>MS.gene91723

ATGATACCGGCTATATTCGGTGGATGTAATGCTACTGTGTTTGCTTATGGTGCTACTGGAAGTGGAAAGACATATACTATGCAGGTGAGAGTGTGATCTATATGTGTGAATTAGTTTAATTTTGTTGTGAATATGTCAATTTTGTTTATTTGTTTTTGGTATATGCAGTTGAGGGAGTGTGATCTATGTATGTTAATTAGTTTAATTTTGCTGTGAATATGTCAATTTTGTTTATTTGTTTTTGGTATATGCAGGAGGGAGAGTGTGATCTATGTATGTTAATTAGTTTAATTTTGCTGTGAATATGTCAATTTTGTTTATTTGTTTTTGGTATATGCAGGGGGGAGAGTGTGATCTATGTATGTTAATTAGTTTAATTTTGTTGTGAATATGTCAATTTTGTTTATTTGTTTTTGGTATATGCAAGGGAGAGAGAGTGTGATCTATGTATGTTAATTAGTTTAATTTTGCTGTGAAAAGTCAATTTTTTTTATGATTTTGGTAATGTTTTTACGAATTAGCTCGTAGAAAGTAACAATTATATGATTATGTGAGGGATCAGAAAGTGAACGAACCCACCTTTGGTTAGGTTTATTGAATTTTTAGCATTTGGTTGTAAATGTAAGTTTGAGTTCAGAGGGTGGTGAGGAGTAGTACTCTTTTTCATGTTTAACAATGACATAGTGTTATGTTATACTTTTCTGAATAATGTACCTTAAGAGAGATTTAGCTGTAAAACGGCCCATTTTTGTAGTTAGTATATGTTATATGTTAGTGAATTATGTCATCATTCATAAATTGAACCTTATCTAGTGCAATAATGTATGGATCCTTTGGCTACGCACAATTTGGCTCAGCTCAGATGGTTATAGGATGGTATTAATGCCGATGCTAAATGAAGAGAGCATCGGTTATTTCATTAGATGTAGCTTTTGGAGTTTGGACCGAATCCTAATCTTGTATATTAGGGATGTAGTAGCTATGGTGTAATTGGTGTTTTGTCTTCTCCCTAGAGTTTTTCTCGCTCCTACTAAGACTTTGTATTATTTATCCTATACTAGCAAAAATGAGCATTCAAAATATCTGATCCACTCTTGAATTCTTGAATTGGTAGTGCTAGGTTGTTTTTATGTACCTGTTTAATTTTTTTAGCAGTTTTTTACTTTTTTGTGTTGTGTAGTTGAAATAACCGATGCTTGGTGATGCAGGGAACTGAACAACAACCTGGCTTGATGCCGTTGGCAATGTCCACTATCCTGTCTATTTGTCAAAACACTGGTAGCACAGCTCAAATTTCATACTATGAGGTCTACATGGACCGATGTTACGACCTCTTAGAGTTAAAAGCAAGTGAGATTTCAGTTTTGGATGACAAAGATGGCCATATTCACCTCAGGGGACTATCTCAAGTTTCTGTAAATACAATGTCCGAATTTCAAGAGGTCTTCTCCAGTGGTATTCAGAGGCGCAAAACTGCACACACAGGCCTCAATGACGTATCCAGCAGGAGTCATGGAGTGCTTGTGATATCTGTACTATCGACTCCTCCTGATGGGAATGGAAGTCTTGTATGTGGAAAATTGAACCTCATAGACTTGGCAGGTTACCGTCCACTCAATTGGGGTAATGGGTTTGATGTATTGCAGGCAACGGAAGGACATAATGCGTTTAAGGTTGATGCAGGTAATGAAGACAATAGAAGAAGCTGCAATGAAGGGATTCGTCTTCAAGAGAGTGCTAAGATAAATCAGTCCTTGTTTGCACTGTCAAATGTGATATATGCATTGAACAACAACAAACCAAGAACACCCTATAGAGACAGCAAATTGACCCGTATATTGCAGGACTCTCTAGGAGGATCTAGTCGTGCCCTCATGGTTGCTTGCCTGGTAAAGCTATAAGTTTTATAGTTTTTTCCCTCATTTAATATTGGTTCATTGATATGCATAACAAGAAAGAGCTTGAGGGGGTAATATATAAGTTGTAGGTTACTTGTTCAACCATTAGAATGACCAAGAGAATTGCATCTTAGCTTAATTCCCCTATTAATTCTGATTAGTGTCGAGATTTCTGTTATTCCACCCGCATTAGACTAGACATTGGAAACGTCAACAAATGTGGATAGAATAACAAATATCTAGGTTTAATACCAGATCTAATATATACTCTGATTATTTAAAAGGCAAGAACTGCTTAAACTATATAACCATTACTCATGTCATAACTAGTCCATATGCAACTCTAAAAATTAGACATTCAGTGTTTAATTATAGCCCTTTATGTGTGATTTCAGAATCCAGGAGAATATCAGGAATCTGTTCATACTGTTAGTTTGGCTGCTCGATCAAGGCACGTCTCAAATTTTGTACCTTCAGCTCATAAACTAGAGACACCAAAAGGTAACGTTGACATGGAAGCCAAATTGAAAGCTTGGCTAGAATCAAGAGGTAAGACAAAGAGCTCACAACAAAGACTTGGAGCATTTAATTCTCCAGTTGTGCAAAAAACTCCCGGTTCCACCATTACCTCTGCTAGGAGATCAGTTACTTTCAATAGCTCAGTGAAGGGTGGCAGAACTTTCATCAACCAAAAAGCTCAACATACTACTGAGAGGTAAGTATGGTCTGATCATTGAAAAGAAGATTATAGAGTATGATTTTCTCATTGATTTTCTGTTAGTGATATTTTCTCTTACTGTGTAAGCAGGGCCTTTGGAGTTTCTTTTAGAAATTTACTAGATGGTGAAGTTGCTTTTGATTCTTGCAAAAAGGTGAGTGAGTGTCACAAGTGAAGGACACGTACTAAAAAGTTCACTAATTACAAGTACTATGCCACTAATACTGAAAAAGACAGGCATTATCAAAAGTACAAGGAACTGTTTTTGTCTTGATGAATATTAAATTTTCATTCATTGTAGATATTTGCATTTTTCTTGACTATAATAATATTTAATGCTATGTAGAACATGCATTCTGGTGTTGAGGACAATGATAAGAGAGAGACTGAGCATGAGGCCAATAAGGCACCACTGGAATCATATAATGATGTACCTGGTATGTCATTACTTGCGTGATCCCTGCACTCTGCATTTATTCGATATTAGAATGAAAATGGACTCCGTACTTGAAATGTCGTAATTGCATTCACCGTAGTTGGCCAACGAGAACAGTTGGATAATTATGAAACATTTCATATTTCTAGTTTCTTTTAAAACTCATGTAATGAGCTTAAAATATGAATTGTTTGATCTTCATCTAACAGTTTCGATTTACTGATTGCGGTGAGTGTGTGGTACTGTGATTACTAGCAGTTCGGATCCTAATATGACAAGGAAGTTTTAGATATTTTGTCACATACATTGATTAATACTTGGTAGAGTCTAATATAACTATGCTTTCTAAAGCTTGAAGCACATGCTTTTGTATGCAGATGAACCATTAAGCAAAGATGTACCAGCAGTACTACAAAGTCCATTAAGAAAAGCTCTCTCTCCCATCAACATCAATGGTATTCAAAACCATCTTCAGACTATGTCTTTGACACGGACACCTTTTTCTGCAACCTGCTCCACTAAGAAAGGGTTGCAGGAAAATGGCACTCCACTTGACAAATTCAGTGCAAGAAGTTCTGCTTTGAAGGTACACCTAGTTGTTTTAACTTCACTAACAAAATGAAATTTGTGAATCTCCTTTCTCACATAATCTATTTTTTTTAATGTGTAGAATTGTCTAGTTCAAGAATACATTGATTTGTTAAATAATGCAAGCAGGTAAATAACATTCTCCATTGTATTTTGCATAATTTCTAAAGCATATTCAGTGAACCTTCTTTCAAGGTGCCTTAACACTGTTTAATTTTTAAATGCAGAGAGGAGCTACTAGAGTTAAAGGTACATGCACGGTTGCTTGCCACATGAATCTCCAGTTTGAATAGTCTCTTTATCTGACAGTTTTTCATTATTGCACTGTTCTTTAGGGTCCATTTTGGTCTGAGAAATCATTTTCTGTTTTAACTTTTTTGTTTTTTTACTTTTGATTACAAAACAACCACGTGCATGTTTGGATTGACGATGAGATTGGAAGAATCACGGCGAACCACTTTAATTTTAGCAAAAACTACACTTTAAAGCTGCAACAAAATCACAATGTTGCCAAACTCACTGCTCATCCAAACATGCATCACATTATTTTCACTTTGTTTCTTGTTTTCAAATATCTCATGTGCAAATATTTGAAAATAAGAAACAAAGTGTCATGATTTTTCTTCGTTTTCTAATACTTGGGATTCAATCATTGTATTCCTTCAGGGCATAGGAGACAAAATGGCAGATTACATTATAGACCTCAGAGAAGAAAGTCCACTAAAATCGGTTAGTATAAATATAATTCATAACTTGCAACACAGATACGATTAGTTCCTCATAATGCTTTTGGTAATGCAATTTTTCGGCATGTTGCAGTTAACTGACCTGGAGAAGATTGGTCTCTCTATGAAGCAGGTATATTACTATATATATAACCATAATGAAATTTTAGTTGAAAATCTAGTTTAATTCTAAAAATGTGAACAAAATTCTAACTTGTACTACTTGTTTGGCAGGCTCATAACCTTTTCACTAAAGCTGCAAAAAAACTCTTTGATGACAAAGCAGAAGATTCAATACTCAATTGA

Protein sequence

>MS.gene91723.t1

MIPAIFGGCNATVFAYGATGSGKTYTMQGTEQQPGLMPLAMSTILSICQNTGSTAQISYYEVYMDRCYDLLELKASEISVLDDKDGHIHLRGLSQVSVNTMSEFQEVFSSGIQRRKTAHTGLNDVSSRSHGVLVISVLSTPPDGNGSLVCGKLNLIDLAGNEDNRRSCNEGIRLQESAKINQSLFALSNVIYALNNNKPRTPYRDSKLTRILQDSLGGSSRALMVACLNPGEYQESVHTVSLAARSRHVSNFVPSAHKLETPKGNVDMEAKLKAWLESRGKTKSSQQRLGAFNSPVVQKTPGSTITSARRSVTFNSSVKGGRTFINQKAQHTTERAFGVSFRNLLDGEVAFDSCKKNMHSGVEDNDKRETEHEANKAPLESYNDVPDEPLSKDVPAVLQSPLRKALSPININGIQNHLQTMSLTRTPFSATCSTKKGLQENGTPLDKFSARSSALKNCLVQEYIDLLNNASREELLELKGIGDKMADYIIDLREESPLKSLTDLEKIGLSMKQAHNLFTKAAKKLFDDKAEDSILN