AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048874

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048874.t1 MTR_8g098980 99.688 321 1 0 1 321 1 321 0.0 662
MS.gene048874.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 541
MS.gene048874.t1 MTR_1g079950 79.114 316 64 2 1 315 30 344 0.0 541
MS.gene048874.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene048874.t1 MTR_1g079950 79.114 316 64 2 1 315 1 315 0.0 540
MS.gene048874.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene048874.t1 MTR_7g116380 78.165 316 67 2 1 315 1 315 0.0 533
MS.gene048874.t1 MTR_5g081230 78.431 306 66 0 1 306 17 322 0.0 523
MS.gene048874.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 511
MS.gene048874.t1 MTR_1g074880 74.603 315 78 2 1 314 1 314 0.0 510
MS.gene048874.t1 MTR_1g043240 75.161 310 75 2 1 309 1 309 2.79e-180 501
MS.gene048874.t1 MTR_7g112870 72.500 320 79 3 1 318 5 317 1.14e-176 491
MS.gene048874.t1 MTR_8g005010 77.163 289 65 1 6 294 4 291 6.35e-174 484
MS.gene048874.t1 MTR_1g079950 82.422 256 44 1 61 315 34 289 1.11e-165 464
MS.gene048874.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 9.42e-158 442
MS.gene048874.t1 MTR_1g074880 78.516 256 54 1 60 314 4 259 1.03e-157 441
MS.gene048874.t1 MTR_8g085610 46.128 297 150 3 6 301 9 296 2.93e-96 287
MS.gene048874.t1 MTR_7g107310 47.826 276 142 2 27 301 27 301 1.97e-95 285
MS.gene048874.t1 MTR_8g085610 47.970 271 139 2 32 301 3 272 3.09e-94 281
MS.gene048874.t1 MTR_5g037200 48.679 265 134 2 27 290 20 283 1.56e-93 280
MS.gene048874.t1 MTR_8g062430 48.302 265 135 2 27 290 20 283 1.82e-93 280
MS.gene048874.t1 MTR_5g093990 44.948 287 154 2 27 312 17 300 5.77e-93 279
MS.gene048874.t1 MTR_1g039380 41.158 311 168 6 6 314 3 300 5.89e-90 271
MS.gene048874.t1 MTR_1g039380 41.935 279 155 4 38 314 3 276 2.18e-86 261
MS.gene048874.t1 MTR_2g087530 50.000 272 122 5 23 280 660 931 9.60e-82 267
MS.gene048874.t1 MTR_1g089370 46.875 288 135 7 9 279 528 814 1.08e-80 262
MS.gene048874.t1 MTR_2g087530 45.603 307 151 6 3 293 525 831 1.82e-80 261
MS.gene048874.t1 MTR_4g050540 45.603 307 151 6 3 293 643 949 4.27e-80 262
MS.gene048874.t1 MTR_3g452710 42.160 287 155 5 3 283 168 449 3.35e-70 226
MS.gene048874.t1 MTR_3g452710 42.160 287 155 5 3 283 235 516 1.52e-69 226
MS.gene048874.t1 MTR_2g100130 38.871 319 178 8 3 310 86 398 4.49e-68 218
MS.gene048874.t1 MTR_2g100130 40.972 288 158 6 3 283 156 438 6.27e-67 217
MS.gene048874.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 6.42e-67 218
MS.gene048874.t1 MTR_2g100130 41.404 285 155 6 3 280 185 464 9.37e-67 218
MS.gene048874.t1 MTR_2g100130 41.404 285 155 6 3 280 195 474 1.33e-66 218
MS.gene048874.t1 MTR_2g100130 40.972 288 157 7 3 283 156 437 2.53e-65 213
MS.gene048874.t1 MTR_2g100130 41.404 285 154 7 3 280 195 473 2.60e-65 214
MS.gene048874.t1 MTR_2g100130 41.818 275 148 6 3 270 195 464 4.02e-65 213
MS.gene048874.t1 MTR_2g100160 38.438 320 180 9 2 310 104 417 6.17e-61 200
MS.gene048874.t1 MTR_5g037200 50.898 167 81 1 27 192 20 186 1.12e-59 191
MS.gene048874.t1 MTR_8g072600 31.111 315 152 10 34 283 100 414 8.18e-36 134
MS.gene048874.t1 MTR_8g072600 30.677 251 130 7 34 240 100 350 9.76e-29 113
MS.gene048874.t1 MTR_2g099710 28.931 318 171 14 32 305 211 517 1.28e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048874.t1 AT1G64040 85.266 319 47 0 1 319 1 319 0.0 589
MS.gene048874.t1 AT4G11240 83.438 320 53 0 1 320 1 320 0.0 585
MS.gene048874.t1 AT2G29400 81.457 302 53 2 1 300 15 315 0.0 526
MS.gene048874.t1 AT2G39840 79.070 301 63 0 1 301 14 314 0.0 516
MS.gene048874.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene048874.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene048874.t1 AT5G59160 78.146 302 65 1 1 301 9 310 0.0 509
MS.gene048874.t1 AT3G46820 77.152 302 68 1 1 301 9 310 0.0 503
MS.gene048874.t1 AT5G43380 70.717 321 93 1 1 321 1 320 9.94e-176 489
MS.gene048874.t1 AT5G43380 71.519 316 89 1 1 316 1 315 3.90e-175 488
MS.gene048874.t1 AT5G43380 70.717 321 93 1 1 321 1 320 5.29e-175 488
MS.gene048874.t1 AT5G27840 75.338 296 70 1 1 296 9 301 6.25e-174 484
MS.gene048874.t1 AT5G27840 73.786 309 73 2 1 304 9 314 7.09e-174 485
MS.gene048874.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene048874.t1 AT5G27840 75.338 296 70 1 1 296 9 301 1.37e-173 484
MS.gene048874.t1 AT3G05580 76.014 296 68 1 1 296 9 301 3.53e-173 483
MS.gene048874.t1 AT3G05580 75.304 247 58 1 1 247 9 252 8.00e-141 398
MS.gene048874.t1 AT2G42500 47.138 297 147 3 6 301 14 301 5.12e-98 292
MS.gene048874.t1 AT3G58500 46.465 297 149 3 6 301 14 301 1.00e-96 288
MS.gene048874.t1 AT5G55260 46.739 276 146 1 27 301 17 292 7.29e-95 283
MS.gene048874.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene048874.t1 AT1G10430 46.503 286 143 3 6 290 7 283 1.70e-94 283
MS.gene048874.t1 AT1G59830 46.853 286 142 3 6 290 7 283 4.39e-94 281
MS.gene048874.t1 AT1G69960 47.547 265 137 2 27 290 21 284 4.13e-93 279
MS.gene048874.t1 AT4G26720 43.310 284 160 1 19 301 9 292 2.02e-92 277
MS.gene048874.t1 AT1G50370 40.453 309 172 5 8 314 2 300 3.47e-90 271
MS.gene048874.t1 AT3G19980 40.453 309 172 5 8 314 2 300 5.48e-90 271
MS.gene048874.t1 AT5G55260 40.694 317 146 2 27 301 17 333 1.67e-86 264
MS.gene048874.t1 AT1G59830 48.400 250 119 3 6 254 7 247 1.88e-83 253
MS.gene048874.t1 AT2G27210 50.000 272 122 5 23 280 666 937 1.76e-82 269
MS.gene048874.t1 AT2G27210 50.000 272 122 5 23 280 671 942 1.86e-82 269
MS.gene048874.t1 AT1G08420 49.632 272 123 5 23 280 677 948 1.35e-81 266
MS.gene048874.t1 AT1G08420 49.632 272 123 5 23 280 682 953 1.42e-81 266
MS.gene048874.t1 AT4G03080 45.364 302 147 7 9 293 530 830 1.15e-80 262
MS.gene048874.t1 AT2G42500 49.327 223 111 2 80 301 33 254 1.55e-76 235
MS.gene048874.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.40e-73 239
MS.gene048874.t1 AT1G03445 42.857 301 149 8 3 282 446 744 8.94e-73 239
MS.gene048874.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene048874.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene048874.t1 AT2G42810 40.702 285 157 5 2 280 170 448 8.75e-67 217
MS.gene048874.t1 AT2G42810 40.702 285 157 5 2 280 224 502 2.40e-66 217
MS.gene048874.t1 AT2G42810 40.702 285 157 5 2 280 223 501 2.53e-66 217
MS.gene048874.t1 AT2G42500 45.238 168 80 3 6 169 14 173 1.80e-44 150
MS.gene048874.t1 AT2G42500 44.571 175 83 4 6 176 14 178 2.55e-44 150
MS.gene048874.t1 AT2G42500 46.250 160 74 3 6 161 14 165 1.05e-43 148
MS.gene048874.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene048874.t1 AT5G63870 30.303 264 134 7 56 269 79 342 5.08e-31 121
MS.gene048874.t1 AT5G63870 30.000 220 119 5 56 240 79 298 2.25e-25 103
MS.gene048874.t1 AT1G48120 28.477 302 144 8 34 269 630 925 5.70e-25 106
MS.gene048874.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.12e-20 93.2
MS.gene048874.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.36e-20 92.8
MS.gene048874.t1 AT5G10900 29.885 261 143 10 56 278 225 483 1.43e-20 92.8

Find 71 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTCCATCAATCGTATTTA+TGG 0.118761 4.2:+5449644 MS.gene048874:CDS
GAAGCAAATTACTTATTTCT+TGG 0.231778 4.2:+5449512 MS.gene048874:CDS
TCAAACTCACCACAGTAATT+TGG 0.239332 4.2:-5450675 None:intergenic
ACCTTATGAGGTGGAGTTCC+AGG 0.245870 4.2:-5450807 None:intergenic
CGAGGTGTTTCATTTACATT+TGG 0.254753 4.2:+5449923 MS.gene048874:CDS
TATCGGAAGACTTCAGTATC+TGG 0.265509 4.2:-5450746 None:intergenic
TCCAACTTTGCCCTTCTTAT+CGG 0.312310 4.2:-5450763 None:intergenic
CCATGATCTGGCACATCAAT+AGG 0.319380 4.2:-5449836 None:intergenic
AGAAATAAGTAATTTGCTTC+AGG 0.320791 4.2:-5449509 None:intergenic
GAGGTGTTTCATTTACATTT+GGG 0.340319 4.2:+5449924 MS.gene048874:CDS
TGATTGCTTTAATTGTTTAC+CGG 0.357293 4.2:+5449721 MS.gene048874:CDS
GCTTCAAGTTCAAGAAGATT+AGG 0.359782 4.2:-5448261 None:intergenic
AAGAAGGGCAAAGTTGGATT+TGG 0.364950 4.2:+5450768 MS.gene048874:CDS
CGTATTCGAACAGCCTTAAA+AGG 0.372745 4.2:-5449475 None:intergenic
AGGAGAACTTCTTTCTTCTC+AGG 0.373373 4.2:+5449606 MS.gene048874:CDS
GCCTTCTCTGCGACCTTCTG+TGG 0.394394 4.2:+5449858 MS.gene048874:CDS
GCCTTAAAAGGTCTGAAAAC+TGG 0.396799 4.2:-5449463 None:intergenic
CATCCCTCAAGATCTTTATC+AGG 0.398758 4.2:-5449887 None:intergenic
GATTGATGGAGGCGCATTCA+TGG 0.439246 4.2:-5449634 None:intergenic
GAAACCATAAATACGATTGA+TGG 0.442568 4.2:-5449648 None:intergenic
TACAGTCACCAGCTTACGTT+TGG 0.445882 4.2:-5450643 None:intergenic
ACCTGGAACTCCACCTCATA+AGG 0.452558 4.2:+5450806 MS.gene048874:CDS
GAAGCTCCTATCAAAATTTG+TGG 0.455039 4.2:+5448279 MS.gene048874:CDS
CCTATTGATGTGCCAGATCA+TGG 0.458791 4.2:+5449836 MS.gene048874:CDS
GGAGGTATAATGTTCGTCTC+TGG 0.469205 4.2:+5449687 MS.gene048874:CDS
CCCACAGAAGGTCGCAGAGA+AGG 0.474160 4.2:-5449859 None:intergenic
ACTGAAGTCTTCCGATAAGA+AGG 0.476810 4.2:+5450752 MS.gene048874:CDS
AGAAGATCCTTTGCATGCAT+GGG 0.477596 4.2:+5449762 MS.gene048874:CDS
TCGCAGAGAAGGCCATGATC+TGG 0.483085 4.2:-5449848 None:intergenic
CATGATCTGGCACATCAATA+GGG 0.484326 4.2:-5449835 None:intergenic
TCCGATAAGAAGGGCAAAGT+TGG 0.484368 4.2:+5450762 MS.gene048874:CDS
GGAGAACTTCTTTCTTCTCA+GGG 0.491751 4.2:+5449607 MS.gene048874:CDS
AATAAGTAATTTGCTTCAGG+TGG 0.494184 4.2:-5449506 None:intergenic
TGATAAAGATCTTGAGGGAT+GGG 0.495424 4.2:+5449889 MS.gene048874:CDS
GCGTCTCAGGTTGTAGAAGA+TGG 0.496210 4.2:+5450606 MS.gene048874:intron
GAGAAGATCCTTTGCATGCA+TGG 0.499556 4.2:+5449761 MS.gene048874:CDS
TCAGCTTTGTACTTCTGCTA+AGG 0.513143 4.2:+5448221 MS.gene048874:CDS
TCTCTTGGAGATGGATGATA+CGG 0.513600 4.2:+5448113 None:intergenic
CCTTCTCTGCGACCTTCTGT+GGG 0.527902 4.2:+5449859 MS.gene048874:CDS
TTTAAGGCTGTTCGAATACG+GGG 0.546220 4.2:+5449478 MS.gene048874:CDS
TGATCCTGATAAAGATCTTG+AGG 0.546600 4.2:+5449883 MS.gene048874:CDS
ATTTACATTTGGGGCTGACA+AGG 0.548915 4.2:+5449934 MS.gene048874:CDS
AAAGGTCTGAAAACTGGCCA+TGG 0.549539 4.2:-5449457 None:intergenic
TCTGATATGTAGAGCTCACC+AGG 0.551295 4.2:+5449988 MS.gene048874:CDS
CTGATAAAGATCTTGAGGGA+TGG 0.553149 4.2:+5449888 MS.gene048874:CDS
AGGTGTTTCATTTACATTTG+GGG 0.560742 4.2:+5449925 MS.gene048874:CDS
TTGTTTGCAGGAGATGTCCA+TGG 0.568088 4.2:+5449440 MS.gene048874:intron
TCATCTACTAGAGCAGCAAC+CGG 0.568940 4.2:-5449740 None:intergenic
TGCATATAAAATCAAATACA+AGG 0.570871 4.2:+5449586 MS.gene048874:CDS
TGTGGTGAGTTTGATAATGC+CGG 0.578788 4.2:+5450684 MS.gene048874:CDS
GATCCTGATAAAGATCTTGA+GGG 0.581991 4.2:+5449884 MS.gene048874:CDS
CTTGGAGATTATGTTGATCG+TGG 0.584311 4.2:+5449530 MS.gene048874:CDS
ATCCACACTCATCATAGCAC+CGG 0.591401 4.2:-5450703 None:intergenic
GGCAATAACTCATCAAGACC+TGG 0.595098 4.2:+5450789 MS.gene048874:CDS
TATCAGGATCAGCCCACAGA+AGG 0.599205 4.2:-5449871 None:intergenic
CTGAAGTCTTCCGATAAGAA+GGG 0.604771 4.2:+5450753 MS.gene048874:CDS
GATAAAGATCTTGAGGGATG+GGG 0.613478 4.2:+5449890 MS.gene048874:CDS
ATAAGTAATTTGCTTCAGGT+GGG 0.616465 4.2:-5449505 None:intergenic
GAAGATCCTTTGCATGCATG+GGG 0.624730 4.2:+5449763 MS.gene048874:CDS
GGATGGGGAGAAAATGATCG+AGG 0.631648 4.2:+5449905 MS.gene048874:CDS
AAGCTTGTATCAGCGAAGAA+CGG 0.636419 4.2:+5448156 MS.gene048874:CDS
GTTTCTACGATGAGTGCAAG+AGG 0.643121 4.2:+5449666 MS.gene048874:CDS
AAGCTGACGAATATCAGCCT+CGG 0.647938 4.2:-5448205 None:intergenic
ACCATAAATACGATTGATGG+AGG 0.650130 4.2:-5449645 None:intergenic
GAGAACTTCTTTCTTCTCAG+GGG 0.674269 4.2:+5449608 MS.gene048874:CDS
TGCCGGTGCTATGATGAGTG+TGG 0.686901 4.2:+5450701 MS.gene048874:CDS
TTAAGGCTGTTCGAATACGG+GGG 0.692495 4.2:+5449479 MS.gene048874:CDS
TCTACGATGAGTGCAAGAGG+AGG 0.698302 4.2:+5449669 MS.gene048874:CDS
TTCTCTGCACCAAATTACTG+TGG 0.705308 4.2:+5450666 MS.gene048874:CDS
AAGATCCTTTGCATGCATGG+GGG 0.732102 4.2:+5449764 MS.gene048874:CDS
GAAGCAAGTTCATCTTACCG+AGG 0.743441 4.2:+5448188 MS.gene048874:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTAATTTTTAATT+GGG + chr4.2:5448443-5448462 MS.gene048874:intron 0.0%
!!! TTTTAATTTTAATTTTTAAT+TGG + chr4.2:5448442-5448461 MS.gene048874:intron 0.0%
!! TATAATTTATGTAATTGAAT+TGG + chr4.2:5448397-5448416 MS.gene048874:intron 10.0%
!! ACAAGTTTAAAAACTATTAA+TGG + chr4.2:5451480-5451499 MS.gene048874:intron 15.0%
!! TATATAAATCTACACAAAAT+CGG - chr4.2:5451255-5451274 None:intergenic 15.0%
!! TATTTATAATGATAATTGAG+CGG + chr4.2:5450179-5450198 MS.gene048874:intron 15.0%
!!! AACTCATAGATTTTAATTTT+AGG + chr4.2:5449050-5449069 MS.gene048874:intron 15.0%
!!! ACTCATAGATTTTAATTTTA+GGG + chr4.2:5449051-5449070 MS.gene048874:intron 15.0%
!!! ATGTTTCCTTTTAATATTTT+GGG + chr4.2:5450579-5450598 MS.gene048874:intron 15.0%
!!! CATTCATATTTTTAACAAAA+TGG - chr4.2:5449266-5449285 None:intergenic 15.0%
!! AAACTTATTGTATATACAGA+CGG - chr4.2:5450098-5450117 None:intergenic 20.0%
!! ATAAATCTATACACAAAATC+AGG - chr4.2:5451039-5451058 None:intergenic 20.0%
!! CTATTTATAAATTATAGCCA+AGG - chr4.2:5450073-5450092 None:intergenic 20.0%
!! TGCATATAAAATCAAATACA+AGG + chr4.2:5449586-5449605 MS.gene048874:CDS 20.0%
!!! CATTATATTTTTACCTTATG+AGG - chr4.2:5450822-5450841 None:intergenic 20.0%
!!! GATGTTTCCTTTTAATATTT+TGG + chr4.2:5450578-5450597 MS.gene048874:intron 20.0%
!!! TCATACACTTTTTTAATGAA+TGG + chr4.2:5448562-5448581 MS.gene048874:intron 20.0%
!!! TGTATTTGATTTTATATGCA+AGG - chr4.2:5449586-5449605 None:intergenic 20.0%
!!! TGTTTCCTTTTAATATTTTG+GGG + chr4.2:5450580-5450599 MS.gene048874:intron 20.0%
!!! TTTTAATTTTTAATTGGGGT+CGG + chr4.2:5448448-5448467 MS.gene048874:intron 20.0%
!!! TTTTTAAACTTGTCTTAACT+TGG - chr4.2:5451473-5451492 None:intergenic 20.0%
! AAAAAAAAAAAAGCTTCCTG+TGG + chr4.2:5451656-5451675 MS.gene048874:intron 25.0%
! AAAAAAAAAAAGCTTCCTGT+GGG + chr4.2:5451657-5451676 MS.gene048874:intron 25.0%
! AAAAAGAGGTAGTTAAACAA+AGG - chr4.2:5450433-5450452 None:intergenic 25.0%
! ACATAAATCTACACAAAATC+AGG - chr4.2:5451361-5451380 None:intergenic 25.0%
! ATATGTTCAATAACCAACTT+AGG - chr4.2:5451007-5451026 None:intergenic 25.0%
! GATTCTATGTATATGTGTAT+GGG + chr4.2:5450878-5450897 MS.gene048874:intron 25.0%
! TAACAAAATGGAAAAGCTTT+AGG - chr4.2:5449254-5449273 None:intergenic 25.0%
! TATGAAACTTCTGAATTCTT+TGG - chr4.2:5451162-5451181 None:intergenic 25.0%
! TGATTCTATGTATATGTGTA+TGG + chr4.2:5450877-5450896 MS.gene048874:intron 25.0%
! TGATTGCTTTAATTGTTTAC+CGG + chr4.2:5449721-5449740 MS.gene048874:CDS 25.0%
! TTAAAAACTTGGATCAGATA+CGG + chr4.2:5449801-5449820 MS.gene048874:CDS 25.0%
! TTATAAATTATAGCCAAGGA+TGG - chr4.2:5450069-5450088 None:intergenic 25.0%
! TTATGTAATTGAATTGGTAG+TGG + chr4.2:5448403-5448422 MS.gene048874:intron 25.0%
! TTGTGATATTTAATGAGTTC+TGG + chr4.2:5451833-5451852 MS.gene048874:intron 25.0%
!! GAAGCAAATTACTTATTTCT+TGG + chr4.2:5449512-5449531 MS.gene048874:CDS 25.0%
!! TTGGGTTTATCTCAAATTTT+TGG + chr4.2:5448948-5448967 MS.gene048874:intron 25.0%
!!! AAGATACCACAAATTTTGAT+AGG - chr4.2:5448288-5448307 None:intergenic 25.0%
!!! AAGCTTTTTTTTTTTTGGGT+GGG - chr4.2:5451652-5451671 None:intergenic 25.0%
!!! ACAGGAAGCTTTTTTTTTTT+TGG - chr4.2:5451657-5451676 None:intergenic 25.0%
!!! AGAAATAAGTAATTTGCTTC+AGG - chr4.2:5449512-5449531 None:intergenic 25.0%
!!! CAGGAAGCTTTTTTTTTTTT+GGG - chr4.2:5451656-5451675 None:intergenic 25.0%
!!! GTTTCCTTTTAATATTTTGG+GGG + chr4.2:5450581-5450600 MS.gene048874:intron 25.0%
!!! TATATTTTTACCTTATGAGG+TGG - chr4.2:5450819-5450838 None:intergenic 25.0%
!!! TTGAGTTGAATTTGTTTTTG+TGG + chr4.2:5448626-5448645 MS.gene048874:intron 25.0%
!!! TTGGACACTTTAATTTTGAT+GGG - chr4.2:5451510-5451529 None:intergenic 25.0%
!!! TTGTTTTTGTGGTTTTTGAT+AGG + chr4.2:5448637-5448656 MS.gene048874:intron 25.0%
!!! TTTAATTTTTAATTGGGGTC+GGG + chr4.2:5448449-5448468 MS.gene048874:intron 25.0%
!!! TTTGGACACTTTAATTTTGA+TGG - chr4.2:5451511-5451530 None:intergenic 25.0%
AAAATGGTGAATTGTGTCTA+TGG - chr4.2:5451561-5451580 None:intergenic 30.0%
AAACATCAGATCAGATTTAC+TGG - chr4.2:5450565-5450584 None:intergenic 30.0%
ACTTCAACACCTCATAAATA+TGG + chr4.2:5450377-5450396 MS.gene048874:intron 30.0%
AGAAGTTTCATAACTTCTAC+TGG + chr4.2:5451306-5451325 MS.gene048874:intron 30.0%
AGAATGATCCCATATTTATG+AGG - chr4.2:5450389-5450408 None:intergenic 30.0%
AGGTGTTTCATTTACATTTG+GGG + chr4.2:5449925-5449944 MS.gene048874:CDS 30.0%
AGTAAAGGATATGACAAAGT+TGG + chr4.2:5450235-5450254 MS.gene048874:intron 30.0%
ATTCTATGTATATGTGCATG+GGG + chr4.2:5451089-5451108 MS.gene048874:intron 30.0%
CATGTTATCAACTTATCATC+AGG + chr4.2:5449220-5449239 MS.gene048874:intron 30.0%
CTTCAACACCTCATAAATAT+GGG + chr4.2:5450378-5450397 MS.gene048874:intron 30.0%
GAAACCATAAATACGATTGA+TGG - chr4.2:5449651-5449670 None:intergenic 30.0%
GATTCTATGTATATGTGCAT+GGG + chr4.2:5451088-5451107 MS.gene048874:intron 30.0%
GTAAAGGATATGACAAAGTT+GGG + chr4.2:5450236-5450255 MS.gene048874:intron 30.0%
TGATTCTATGTATATGTGCA+TGG + chr4.2:5451087-5451106 MS.gene048874:intron 30.0%
TTATATATTTGTCTGTGTGC+TGG + chr4.2:5450491-5450510 MS.gene048874:intron 30.0%
TTATTTGTGTTTCCACATTG+CGG + chr4.2:5448731-5448750 MS.gene048874:intron 30.0%
TTCTCCTGAACTTAAAAACT+TGG + chr4.2:5449790-5449809 MS.gene048874:CDS 30.0%
! AAGTTTCATGTCACTTAAGT+TGG + chr4.2:5451207-5451226 MS.gene048874:intron 30.0%
! GAGGTGTTTCATTTACATTT+GGG + chr4.2:5449924-5449943 MS.gene048874:CDS 30.0%
! GGTTTAAACAATTTGTTTGC+AGG + chr4.2:5449428-5449447 MS.gene048874:intron 30.0%
! TGGTTTTTGATAGGATTGTT+TGG + chr4.2:5448646-5448665 MS.gene048874:intron 30.0%
!! AATAAGTAATTTGCTTCAGG+TGG - chr4.2:5449509-5449528 None:intergenic 30.0%
!! ATAAGTAATTTGCTTCAGGT+GGG - chr4.2:5449508-5449527 None:intergenic 30.0%
!! ATTGCTTTAGAGAAACATCT+TGG + chr4.2:5451428-5451447 MS.gene048874:intron 30.0%
!! TTGCTTTAGAGAAACATCTT+GGG + chr4.2:5451429-5451448 MS.gene048874:intron 30.0%
!!! AGCTTTTTTTTTTTTGGGTG+GGG - chr4.2:5451651-5451670 None:intergenic 30.0%
!!! AGTTTTAAGCACAAAGGAAA+GGG - chr4.2:5450356-5450375 None:intergenic 30.0%
!!! CACTTTTTTAATGAATGGCT+AGG + chr4.2:5448567-5448586 MS.gene048874:intron 30.0%
!!! GAAGCTTTTTTTTTTTTGGG+TGG - chr4.2:5451653-5451672 None:intergenic 30.0%
!!! GAAGTTAGTTTTAAGCACAA+AGG - chr4.2:5450362-5450381 None:intergenic 30.0%
!!! TAGTTTTAAGCACAAAGGAA+AGG - chr4.2:5450357-5450376 None:intergenic 30.0%
!!! TGATCCAAGTTTTTAAGTTC+AGG - chr4.2:5449797-5449816 None:intergenic 30.0%
!!! TTTTAATTTTAGGGATGCAG+TGG + chr4.2:5449060-5449079 MS.gene048874:intron 30.0%
AAAAAGAGATTCAACGTTCG+CGG + chr4.2:5451528-5451547 MS.gene048874:intron 35.0%
AAGTTTCATGTCACCTAAGT+TGG + chr4.2:5450991-5451010 MS.gene048874:intron 35.0%
ACACACAACATAATGAGACA+AGG - chr4.2:5449350-5449369 None:intergenic 35.0%
ACAGTGGTCAAAAGCAAAAT+AGG - chr4.2:5449389-5449408 None:intergenic 35.0%
ACCATAAATACGATTGATGG+AGG - chr4.2:5449648-5449667 None:intergenic 35.0%
ACTAAACTGATTGACAACCA+AGG - chr4.2:5448831-5448850 None:intergenic 35.0%
ATTGAAATCAACCAAGCTAC+AGG - chr4.2:5450022-5450041 None:intergenic 35.0%
CTAAACTGATTGACAACCAA+GGG - chr4.2:5448830-5448849 None:intergenic 35.0%
GAAGCTCCTATCAAAATTTG+TGG + chr4.2:5448279-5448298 MS.gene048874:CDS 35.0%
GAGAAAGACTACATGAGTAA+AGG + chr4.2:5450220-5450239 MS.gene048874:intron 35.0%
GATCCTGATAAAGATCTTGA+GGG + chr4.2:5449884-5449903 MS.gene048874:CDS 35.0%
GTCATCTGTAAGTGTTAAAC+TGG + chr4.2:5449407-5449426 MS.gene048874:intron 35.0%
TAAACTGATTGACAACCAAG+GGG - chr4.2:5448829-5448848 None:intergenic 35.0%
TCAAACTCACCACAGTAATT+TGG - chr4.2:5450678-5450697 None:intergenic 35.0%
TGATAAAGATCTTGAGGGAT+GGG + chr4.2:5449889-5449908 MS.gene048874:CDS 35.0%
TGATCCTGATAAAGATCTTG+AGG + chr4.2:5449883-5449902 MS.gene048874:CDS 35.0%
TTAACACTTACAGATGACAG+TGG - chr4.2:5449405-5449424 None:intergenic 35.0%
TTCTATGTATATGTGCATGG+GGG + chr4.2:5451090-5451109 MS.gene048874:intron 35.0%
TTCTTTCTTCTGTGAATTCC+CGG + chr4.2:5448870-5448889 MS.gene048874:intron 35.0%
TTGAAATCAACCAAGCTACA+GGG - chr4.2:5450021-5450040 None:intergenic 35.0%
! ACCATTTTCTTGTGGTTTCT+AGG + chr4.2:5451573-5451592 MS.gene048874:intron 35.0%
! ACGGGTCGACTAAAATTTTT+AGG + chr4.2:5451705-5451724 MS.gene048874:intron 35.0%
! AGGGGTATATAAGTGAGAAA+TGG + chr4.2:5451593-5451612 MS.gene048874:intron 35.0%
! CACAATTCACCATTTTCTTG+TGG + chr4.2:5451565-5451584 MS.gene048874:intron 35.0%
! CCATTTTCTTGTGGTTTCTA+GGG + chr4.2:5451574-5451593 MS.gene048874:intron 35.0%
! CGAGGTGTTTCATTTACATT+TGG + chr4.2:5449923-5449942 MS.gene048874:CDS 35.0%
! GCTTCAAGTTCAAGAAGATT+AGG - chr4.2:5448264-5448283 None:intergenic 35.0%
! GTTTTCTTCAGACAATCAAG+TGG + chr4.2:5448668-5448687 MS.gene048874:intron 35.0%
! TCTTAACTTGGTAACAGCAT+AGG - chr4.2:5451461-5451480 None:intergenic 35.0%
! TTTAATTAAAGCGGCACTGA+GGG + chr4.2:5448488-5448507 MS.gene048874:intron 35.0%
! TTTTGCACATACTGTGGTTT+TGG + chr4.2:5449157-5449176 MS.gene048874:intron 35.0%
!! AGTAAGAGTGTGTTTGGTTT+TGG - chr4.2:5449194-5449213 None:intergenic 35.0%
!! CATTTTCTTGTGGTTTCTAG+GGG + chr4.2:5451575-5451594 MS.gene048874:intron 35.0%
!! CTCTAAAGTAAGAGTGTGTT+TGG - chr4.2:5449200-5449219 None:intergenic 35.0%
!! GTTTTAAGCACAAAGGAAAG+GGG - chr4.2:5450355-5450374 None:intergenic 35.0%
!! TGCATGTTTGATTTGACGTT+TGG + chr4.2:5449090-5449109 MS.gene048874:intron 35.0%
!! TTTTAATTAAAGCGGCACTG+AGG + chr4.2:5448487-5448506 MS.gene048874:intron 35.0%
!!! CTTTTAAGGCTGTTCGAATA+CGG + chr4.2:5449476-5449495 MS.gene048874:CDS 35.0%
!!! TTTAGCTTTTGCACATACTG+TGG + chr4.2:5449151-5449170 MS.gene048874:intron 35.0%
!!! TTTTAAGGCTGTTCGAATAC+GGG + chr4.2:5449477-5449496 MS.gene048874:CDS 35.0%
!!! TTTTTTTTTTTGGGTGGGGA+GGG - chr4.2:5451647-5451666 None:intergenic 35.0%
!!! TTTTTTTTTTTTGGGTGGGG+AGG - chr4.2:5451648-5451667 None:intergenic 35.0%
AAAAGAGATTCAACGTTCGC+GGG + chr4.2:5451529-5451548 MS.gene048874:intron 40.0%
AAAAGCAAAATAGGACCTGG+AGG - chr4.2:5449380-5449399 None:intergenic 40.0%
AAAAGCCCACTTATCTAACG+TGG + chr4.2:5449026-5449045 MS.gene048874:intron 40.0%
AAACCCAAAAACACACCACA+AGG - chr4.2:5448936-5448955 None:intergenic 40.0%
AAAGTCCCAGATCATGGTTT+GGG + chr4.2:5449113-5449132 MS.gene048874:intron 40.0%
AAGAAGGGCAAAGTTGGATT+TGG + chr4.2:5450768-5450787 MS.gene048874:CDS 40.0%
AAGCTTGTATCAGCGAAGAA+CGG + chr4.2:5448156-5448175 MS.gene048874:CDS 40.0%
ACCCTGGAATAACAGGTATA+TGG - chr4.2:5451859-5451878 None:intergenic 40.0%
ACTGAAGTCTTCCGATAAGA+AGG + chr4.2:5450752-5450771 MS.gene048874:CDS 40.0%
AGAAATGGCTATGCTCTTTG+GGG + chr4.2:5451608-5451627 MS.gene048874:intron 40.0%
AGAAGATCCTTTGCATGCAT+GGG + chr4.2:5449762-5449781 MS.gene048874:CDS 40.0%
AGACAAGGCAATCAAACTAG+GGG - chr4.2:5449335-5449354 None:intergenic 40.0%
AGGAGAACTTCTTTCTTCTC+AGG + chr4.2:5449606-5449625 MS.gene048874:CDS 40.0%
AGTATCTCTTCCTGTTGAGA+TGG + chr4.2:5448799-5448818 MS.gene048874:intron 40.0%
AGTTGCCACGTTAGATAAGT+GGG - chr4.2:5449034-5449053 None:intergenic 40.0%
ATATACCTGTTATTCCAGGG+TGG + chr4.2:5451858-5451877 MS.gene048874:intron 40.0%
ATCTCAACAGGAAGAGATAC+TGG - chr4.2:5448800-5448819 None:intergenic 40.0%
ATGCACAACACGACTGAATA+TGG + chr4.2:5450315-5450334 MS.gene048874:intron 40.0%
ATTATAGCCAAGGATGGCAT+TGG - chr4.2:5450063-5450082 None:intergenic 40.0%
CATCCCTCAAGATCTTTATC+AGG - chr4.2:5449890-5449909 None:intergenic 40.0%
CATGATCTGGCACATCAATA+GGG - chr4.2:5449838-5449857 None:intergenic 40.0%
CCCTAGAAACCACAAGAAAA+TGG - chr4.2:5451577-5451596 None:intergenic 40.0%
CGTATTCGAACAGCCTTAAA+AGG - chr4.2:5449478-5449497 None:intergenic 40.0%
CTGAAGTCTTCCGATAAGAA+GGG + chr4.2:5450753-5450772 MS.gene048874:CDS 40.0%
CTGATAAAGATCTTGAGGGA+TGG + chr4.2:5449888-5449907 MS.gene048874:CDS 40.0%
CTTGGAGATTATGTTGATCG+TGG + chr4.2:5449530-5449549 MS.gene048874:CDS 40.0%
GAGAAATGGCTATGCTCTTT+GGG + chr4.2:5451607-5451626 MS.gene048874:intron 40.0%
GAGAACTTCTTTCTTCTCAG+GGG + chr4.2:5449608-5449627 MS.gene048874:CDS 40.0%
GAGACAAGGCAATCAAACTA+GGG - chr4.2:5449336-5449355 None:intergenic 40.0%
GATAAAGATCTTGAGGGATG+GGG + chr4.2:5449890-5449909 MS.gene048874:CDS 40.0%
GCAGCCCCCAAAATATTAAA+AGG - chr4.2:5450588-5450607 None:intergenic 40.0%
GCCATATACCTGTTATTCCA+GGG + chr4.2:5451855-5451874 MS.gene048874:intron 40.0%
GCCTCCATCAATCGTATTTA+TGG + chr4.2:5449644-5449663 MS.gene048874:CDS 40.0%
GCCTTAAAAGGTCTGAAAAC+TGG - chr4.2:5449466-5449485 None:intergenic 40.0%
GGAGAACTTCTTTCTTCTCA+GGG + chr4.2:5449607-5449626 MS.gene048874:CDS 40.0%
GTATCTCTTCCTGTTGAGAT+GGG + chr4.2:5448800-5448819 MS.gene048874:intron 40.0%
GTCAAAAGCAAAATAGGACC+TGG - chr4.2:5449383-5449402 None:intergenic 40.0%
TAGTCGACCCGTATACATAA+GGG - chr4.2:5451697-5451716 None:intergenic 40.0%
TATACCTGTTATTCCAGGGT+GGG + chr4.2:5451859-5451878 MS.gene048874:intron 40.0%
TATCGGAAGACTTCAGTATC+TGG - chr4.2:5450749-5450768 None:intergenic 40.0%
TCCAACTTTGCCCTTCTTAT+CGG - chr4.2:5450766-5450785 None:intergenic 40.0%
TGAGAAATGGCTATGCTCTT+TGG + chr4.2:5451606-5451625 MS.gene048874:intron 40.0%
TGAGACAAGGCAATCAAACT+AGG - chr4.2:5449337-5449356 None:intergenic 40.0%
TGCTTCTTTCGACACTTCTT+TGG + chr4.2:5448599-5448618 MS.gene048874:intron 40.0%
TTAGTCGACCCGTATACATA+AGG - chr4.2:5451698-5451717 None:intergenic 40.0%
TTCCGTAAACCAGATACTCA+AGG - chr4.2:5449301-5449320 None:intergenic 40.0%
TTCTCTGCACCAAATTACTG+TGG + chr4.2:5450666-5450685 MS.gene048874:CDS 40.0%
! ATTGGGATTTTGCTTCGCTT+AGG + chr4.2:5450517-5450536 MS.gene048874:intron 40.0%
! ATTTACATTTGGGGCTGACA+AGG + chr4.2:5449934-5449953 MS.gene048874:CDS 40.0%
! CACCTTGAGTATCTGGTTTA+CGG + chr4.2:5449296-5449315 MS.gene048874:intron 40.0%
! CACGACTGAATATGGTTTTC+TGG + chr4.2:5450323-5450342 MS.gene048874:intron 40.0%
! GACTGAATATGGTTTTCTGG+CGG + chr4.2:5450326-5450345 MS.gene048874:intron 40.0%
! GCCAGTTTTCAGACCTTTTA+AGG + chr4.2:5449462-5449481 MS.gene048874:CDS 40.0%
! GCGAACGTTGAATCTCTTTT+TGG - chr4.2:5451529-5451548 None:intergenic 40.0%
! TCAGCTTTGTACTTCTGCTA+AGG + chr4.2:5448221-5448240 MS.gene048874:CDS 40.0%
! TTGGGATTTTGCTTCGCTTA+GGG + chr4.2:5450518-5450537 MS.gene048874:intron 40.0%
! TTTAAGGCTGTTCGAATACG+GGG + chr4.2:5449478-5449497 MS.gene048874:CDS 40.0%
! TTTTGCCCAAACCATGATCT+GGG - chr4.2:5449121-5449140 None:intergenic 40.0%
!! TCAGTTTAGTTTGAAACCCC+TGG + chr4.2:5448841-5448860 MS.gene048874:intron 40.0%
!! TGTGGTGAGTTTGATAATGC+CGG + chr4.2:5450684-5450703 MS.gene048874:CDS 40.0%
!!! GTGTGTTTGGTTTTGGCATT+CGG - chr4.2:5449187-5449206 None:intergenic 40.0%
!!! GTTTTTTGCCAAACGTAAGC+TGG + chr4.2:5450635-5450654 MS.gene048874:CDS 40.0%
!!! TTTTTTTTTTGGGTGGGGAG+GGG - chr4.2:5451646-5451665 None:intergenic 40.0%
AAAGGTCTGAAAACTGGCCA+TGG - chr4.2:5449460-5449479 None:intergenic 45.0%
AAGATCCTTTGCATGCATGG+GGG + chr4.2:5449764-5449783 MS.gene048874:CDS 45.0%
AAGCTGACGAATATCAGCCT+CGG - chr4.2:5448208-5448227 None:intergenic 45.0%
AATTGAGCGGTGAGACTTGA+AGG + chr4.2:5450192-5450211 MS.gene048874:intron 45.0%
ACAAGGCAATCAAACTAGGG+GGG - chr4.2:5449333-5449352 None:intergenic 45.0%
AGAAGAAAGAAGCTCGACCA+GGG - chr4.2:5448861-5448880 None:intergenic 45.0%
ATCCACACTCATCATAGCAC+CGG - chr4.2:5450706-5450725 None:intergenic 45.0%
CAGTATGCTCCTGACATAAG+GGG - chr4.2:5448913-5448932 None:intergenic 45.0%
CCATGATCTGGCACATCAAT+AGG - chr4.2:5449839-5449858 None:intergenic 45.0%
CCTATTGATGTGCCAGATCA+TGG + chr4.2:5449836-5449855 MS.gene048874:CDS 45.0%
CTGAGGCTGTATGAGATAGA+AGG + chr4.2:5448772-5448791 MS.gene048874:intron 45.0%
CTTCTGTGAATTCCCGGTTT+AGG + chr4.2:5448876-5448895 MS.gene048874:intron 45.0%
GAAAGTCCCAGATCATGGTT+TGG + chr4.2:5449112-5449131 MS.gene048874:intron 45.0%
GAAGATCCTTTGCATGCATG+GGG + chr4.2:5449763-5449782 MS.gene048874:CDS 45.0%
GAAGCAAGTTCATCTTACCG+AGG + chr4.2:5448188-5448207 MS.gene048874:CDS 45.0%
GACAAGGCAATCAAACTAGG+GGG - chr4.2:5449334-5449353 None:intergenic 45.0%
GAGAAGATCCTTTGCATGCA+TGG + chr4.2:5449761-5449780 MS.gene048874:CDS 45.0%
GAGTTGCCACGTTAGATAAG+TGG - chr4.2:5449035-5449054 None:intergenic 45.0%
GCAGTATGCTCCTGACATAA+GGG - chr4.2:5448914-5448933 None:intergenic 45.0%
GGCAATAACTCATCAAGACC+TGG + chr4.2:5450789-5450808 MS.gene048874:CDS 45.0%
GGCCATATACCTGTTATTCC+AGG + chr4.2:5451854-5451873 MS.gene048874:intron 45.0%
GTTTCTACGATGAGTGCAAG+AGG + chr4.2:5449666-5449685 MS.gene048874:CDS 45.0%
GTTTGGAAAGTCCCAGATCA+TGG + chr4.2:5449107-5449126 MS.gene048874:intron 45.0%
TACAGTCACCAGCTTACGTT+TGG - chr4.2:5450646-5450665 None:intergenic 45.0%
TCATCTACTAGAGCAGCAAC+CGG - chr4.2:5449743-5449762 None:intergenic 45.0%
TCCGATAAGAAGGGCAAAGT+TGG + chr4.2:5450762-5450781 MS.gene048874:CDS 45.0%
TCTGATATGTAGAGCTCACC+AGG + chr4.2:5449988-5450007 MS.gene048874:CDS 45.0%
TGATTGACCAATGCCATCCT+TGG + chr4.2:5450053-5450072 MS.gene048874:intron 45.0%
TGTGTTTCCACATTGCGGAT+GGG + chr4.2:5448736-5448755 MS.gene048874:intron 45.0%
TTAAGGCTGTTCGAATACGG+GGG + chr4.2:5449479-5449498 MS.gene048874:CDS 45.0%
TTGGCCTGTTGACATTTGTG+CGG + chr4.2:5448967-5448986 MS.gene048874:intron 45.0%
TTGTGTGTGTATCTTCCTCC+AGG + chr4.2:5449362-5449381 MS.gene048874:intron 45.0%
TTGTGTTTCCACATTGCGGA+TGG + chr4.2:5448735-5448754 MS.gene048874:intron 45.0%
TTGTTTGCAGGAGATGTCCA+TGG + chr4.2:5449440-5449459 MS.gene048874:intron 45.0%
! ACCAGATACTCAAGGTGTCA+AGG - chr4.2:5449293-5449312 None:intergenic 45.0%
! ACTGCCTTGTGGTGTGTTTT+TGG + chr4.2:5448929-5448948 MS.gene048874:intron 45.0%
! CCAGATACTCAAGGTGTCAA+GGG - chr4.2:5449292-5449311 None:intergenic 45.0%
! CTGCCTTGTGGTGTGTTTTT+GGG + chr4.2:5448930-5448949 MS.gene048874:intron 45.0%
! CTTTTGCCCAAACCATGATC+TGG - chr4.2:5449122-5449141 None:intergenic 45.0%
! GGAGGTATAATGTTCGTCTC+TGG + chr4.2:5449687-5449706 MS.gene048874:CDS 45.0%
! TAAGCACATGCTTTGAGCAG+AGG + chr4.2:5450156-5450175 MS.gene048874:intron 45.0%
! TGGGATTTTGCTTCGCTTAG+GGG + chr4.2:5450519-5450538 MS.gene048874:intron 45.0%
! TGTCTGTGTGCTGGTGTATT+GGG + chr4.2:5450500-5450519 MS.gene048874:intron 45.0%
! TTGTCTGTGTGCTGGTGTAT+TGG + chr4.2:5450499-5450518 MS.gene048874:intron 45.0%
!!! TTTTTTTTTGGGTGGGGAGG+GGG - chr4.2:5451645-5451664 None:intergenic 45.0%
!! TTAAAAAAAAAAAAAAAAAG+AGG - chr4.2:5450447-5450466 None:intergenic 5.0%
!!! TTAATTTTAATTTTTAATTG+GGG + chr4.2:5448444-5448463 MS.gene048874:intron 5.0%
!!! TTTTTTTTTTTTAATTAAAG+CGG + chr4.2:5448479-5448498 MS.gene048874:intron 5.0%
!!! TTTTTTTTTTTTTTTAATTG+CGG + chr4.2:5450450-5450469 MS.gene048874:intron 5.0%
AAAGTCCCCCATGCATGCAA+AGG - chr4.2:5449772-5449791 None:intergenic 50.0%
AAGCTACAGGGTTCGTTACC+TGG - chr4.2:5450009-5450028 None:intergenic 50.0%
AAGGGGTTTCCCATCTCAAC+AGG - chr4.2:5448812-5448831 None:intergenic 50.0%
ACCTGGAACTCCACCTCATA+AGG + chr4.2:5450806-5450825 MS.gene048874:CDS 50.0%
ACCTTATGAGGTGGAGTTCC+AGG - chr4.2:5450810-5450829 None:intergenic 50.0%
AGGTAACGAACCCTGTAGCT+TGG + chr4.2:5450008-5450027 MS.gene048874:intron 50.0%
AGTGCCGCACAAATGTCAAC+AGG - chr4.2:5448974-5448993 None:intergenic 50.0%
CAGAAGAAAGAAGCTCGACC+AGG - chr4.2:5448862-5448881 None:intergenic 50.0%
CCCTTGACACCTTGAGTATC+TGG + chr4.2:5449289-5449308 MS.gene048874:intron 50.0%
CTGTGAATTCCCGGTTTAGG+TGG + chr4.2:5448879-5448898 MS.gene048874:intron 50.0%
GAAGAAAGAAGCTCGACCAG+GGG - chr4.2:5448860-5448879 None:intergenic 50.0%
GGATGGGGAGAAAATGATCG+AGG + chr4.2:5449905-5449924 MS.gene048874:CDS 50.0%
GGCAGTATGCTCCTGACATA+AGG - chr4.2:5448915-5448934 None:intergenic 50.0%
GTGTTTCCACATTGCGGATG+GGG + chr4.2:5448737-5448756 MS.gene048874:intron 50.0%
GTTGACATTTGTGCGGCACT+CGG + chr4.2:5448974-5448993 MS.gene048874:intron 50.0%
TATCAGGATCAGCCCACAGA+AGG - chr4.2:5449874-5449893 None:intergenic 50.0%
TCCCGGTTTAGGTGGTATCT+GGG + chr4.2:5448887-5448906 MS.gene048874:intron 50.0%
TCTACGATGAGTGCAAGAGG+AGG + chr4.2:5449669-5449688 MS.gene048874:CDS 50.0%
TCTTCCCACCCTGGAATAAC+AGG - chr4.2:5451866-5451885 None:intergenic 50.0%
TGGGGGGTTATAATGCACTG+AGG + chr4.2:5448755-5448774 MS.gene048874:intron 50.0%
TGTGCGGCACTCGGTTTAAA+TGG + chr4.2:5448983-5449002 MS.gene048874:intron 50.0%
TGTTGAGATGGGAAACCCCT+TGG + chr4.2:5448811-5448830 MS.gene048874:intron 50.0%
TGTTTCCACATTGCGGATGG+GGG + chr4.2:5448738-5448757 MS.gene048874:intron 50.0%
TTCCCGGTTTAGGTGGTATC+TGG + chr4.2:5448886-5448905 MS.gene048874:intron 50.0%
! GATTGATGGAGGCGCATTCA+TGG - chr4.2:5449637-5449656 None:intergenic 50.0%
! GCGTCTCAGGTTGTAGAAGA+TGG + chr4.2:5450606-5450625 MS.gene048874:intron 50.0%
ACCCCGGCCCTTATGTATAC+GGG + chr4.2:5451687-5451706 MS.gene048874:intron 55.0%
ACCCGTATACATAAGGGCCG+GGG - chr4.2:5451691-5451710 None:intergenic 55.0%
ATAACCCCCCATCCGCAATG+TGG - chr4.2:5448746-5448765 None:intergenic 55.0%
CCTTCTCTGCGACCTTCTGT+GGG + chr4.2:5449859-5449878 MS.gene048874:CDS 55.0%
CGACCCGTATACATAAGGGC+CGG - chr4.2:5451693-5451712 None:intergenic 55.0%
GACCCCGGCCCTTATGTATA+CGG + chr4.2:5451686-5451705 MS.gene048874:intron 55.0%
GACCCGTATACATAAGGGCC+GGG - chr4.2:5451692-5451711 None:intergenic 55.0%
GCCCAGATACCACCTAAACC+GGG - chr4.2:5448891-5448910 None:intergenic 55.0%
GGCCCAGATACCACCTAAAC+CGG - chr4.2:5448892-5448911 None:intergenic 55.0%
GTATCTGGGCCCCTTATGTC+AGG + chr4.2:5448901-5448920 MS.gene048874:intron 55.0%
GTTTCCACATTGCGGATGGG+GGG + chr4.2:5448739-5448758 MS.gene048874:intron 55.0%
TCGCAGAGAAGGCCATGATC+TGG - chr4.2:5449851-5449870 None:intergenic 55.0%
! GTCAGGAGCATACTGCCTTG+TGG + chr4.2:5448918-5448937 MS.gene048874:intron 55.0%
!! TATTTTGGGGGCTGCGTCTC+AGG + chr4.2:5450593-5450612 MS.gene048874:intron 55.0%
!! TGCCGGTGCTATGATGAGTG+TGG + chr4.2:5450701-5450720 MS.gene048874:CDS 55.0%
CCCACAGAAGGTCGCAGAGA+AGG - chr4.2:5449862-5449881 None:intergenic 60.0%
GCCTTCTCTGCGACCTTCTG+TGG + chr4.2:5449858-5449877 MS.gene048874:CDS 60.0%
TCCTGTGGGAGAAGTGACCC+CGG + chr4.2:5451671-5451690 MS.gene048874:intron 60.0%
GCCGGGGTCACTTCTCCCAC+AGG - chr4.2:5451675-5451694 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 5448123 5451890 5448123 ID=MS.gene048874
chr4.2 mRNA 5448123 5451890 5448123 ID=MS.gene048874.t1;Parent=MS.gene048874
chr4.2 exon 5448123 5448300 5448123 ID=MS.gene048874.t1.exon1;Parent=MS.gene048874.t1
chr4.2 CDS 5448123 5448300 5448123 ID=cds.MS.gene048874.t1;Parent=MS.gene048874.t1
chr4.2 exon 5449450 5450009 5449450 ID=MS.gene048874.t1.exon2;Parent=MS.gene048874.t1
chr4.2 CDS 5449450 5450009 5449450 ID=cds.MS.gene048874.t1;Parent=MS.gene048874.t1
chr4.2 exon 5450615 5450827 5450615 ID=MS.gene048874.t1.exon3;Parent=MS.gene048874.t1
chr4.2 CDS 5450615 5450827 5450615 ID=cds.MS.gene048874.t1;Parent=MS.gene048874.t1
chr4.2 exon 5451876 5451890 5451876 ID=MS.gene048874.t1.exon4;Parent=MS.gene048874.t1
chr4.2 CDS 5451876 5451890 5451876 ID=cds.MS.gene048874.t1;Parent=MS.gene048874.t1
Gene Sequence

>MS.gene048874

ATGGATGATACGGTGCTTGATGATATCATAAAGAAGCTTGTATCAGCGAAGAACGGAAGAACAACGAAGCAAGTTCATCTTACCGAGGCTGATATTCGTCAGCTTTGTACTTCTGCTAAGGAGATCTTTCTCAGTCAACCTAATCTTCTTGAACTTGAAGCTCCTATCAAAATTTGTGGTATCTTTCTTTTTTCTTTTCAATTAGCAATTATTATAATCTTGTTTCTTTGTGCTGATTATTATAATTCATTTTTACTCGTAATCTTCATTTTGTTATAATTTATGTAATTGAATTGGTAGTGGCACGCAGTTCTGTTAATTTTAATTTTAATTTTTAATTGGGGTCGGGTGATTTTTTTTTTTTTTTTAATTAAAGCGGCACTGAGGGTAGTTGAACTCGTGAGCTCTTACTTCTGAACGCATAATTTCTGTTAATAGATCATACACTTTTTTAATGAATGGCTAGGTTTTTGTTATGCTTCTTTCGACACTTCTTTGGTAGCTTGAGTTGAATTTGTTTTTGTGGTTTTTGATAGGATTGTTTGGTTTTCTTCAGACAATCAAGTGGTTTTCTGCACGACATCATTTCAAATAAGTTTCTTGTTTAATTATTTGTGTTTCCACATTGCGGATGGGGGGTTATAATGCACTGAGGCTGTATGAGATAGAAGGAGCCAGTATCTCTTCCTGTTGAGATGGGAAACCCCTTGGTTGTCAATCAGTTTAGTTTGAAACCCCTGGTCGAGCTTCTTTCTTCTGTGAATTCCCGGTTTAGGTGGTATCTGGGCCCCTTATGTCAGGAGCATACTGCCTTGTGGTGTGTTTTTGGGTTTATCTCAAATTTTTGGCCTGTTGACATTTGTGCGGCACTCGGTTTAAATGGTCGATACTTGTAAACATTTTAAAAGCCCACTTATCTAACGTGGCAACTCATAGATTTTAATTTTAGGGATGCAGTGGTATTTAGTGCATGTTTGATTTGACGTTTGGAAAGTCCCAGATCATGGTTTGGGCAAAAGCTTGTCTCTTTTAGCTTTTGCACATACTGTGGTTTTGGAGTTCCGAATGCCAAAACCAAACACACTCTTACTTTAGAGCATGTTATCAACTTATCATCAGGTTTTCTTACCTAAAGCTTTTCCATTTTGTTAAAAATATGAATGTTACCCTTGACACCTTGAGTATCTGGTTTACGGAATTAAATATTCCCCCCTAGTTTGATTGCCTTGTCTCATTATGTTGTGTGTGTATCTTCCTCCAGGTCCTATTTTGCTTTTGACCACTGTCATCTGTAAGTGTTAAACTGGTTTAAACAATTTGTTTGCAGGAGATGTCCATGGCCAGTTTTCAGACCTTTTAAGGCTGTTCGAATACGGGGGATACCCACCTGAAGCAAATTACTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTGCTCCTTGCATATAAAATCAAATACAAGGAGAACTTCTTTCTTCTCAGGGGCAACCATGAATGCGCCTCCATCAATCGTATTTATGGTTTCTACGATGAGTGCAAGAGGAGGTATAATGTTCGTCTCTGGAAGACGTTTACTGATTGCTTTAATTGTTTACCGGTTGCTGCTCTAGTAGATGAGAAGATCCTTTGCATGCATGGGGGACTTTCTCCTGAACTTAAAAACTTGGATCAGATACGGAATATTGCTCGCCCTATTGATGTGCCAGATCATGGCCTTCTCTGCGACCTTCTGTGGGCTGATCCTGATAAAGATCTTGAGGGATGGGGAGAAAATGATCGAGGTGTTTCATTTACATTTGGGGCTGACAAGGTTGTTGAGTTTCTTGAGCATCATGATCTTGATCTGATATGTAGAGCTCACCAGGTAACGAACCCTGTAGCTTGGTTGATTTCAATGATTTTATTCTTGATTGACCAATGCCATCCTTGGCTATAATTTATAAATAGTACCGTCTGTATATACAATAAGTTTGAAATTTACTGATTATTGCTCAAATTGTTTTAAAAAAATAAGCACATGCTTTGAGCAGAGGTATTTATAATGATAATTGAGCGGTGAGACTTGAAGGAATAAGAGAAAGACTACATGAGTAAAGGATATGACAAAGTTGGGTTTTAAGACAGACAAATTAGTTACTATTGTAAAGTCTTGTTAATTTATGATTTTTAATGCACAACACGACTGAATATGGTTTTCTGGCGGCTTCCCCTTTCCTTTGTGCTTAAAACTAACTTCAACACCTCATAAATATGGGATCATTCTTATTTATGTTCAATTGACGATCCTTTGTTTAACTACCTCTTTTTTTTTTTTTTTTTAATTGCGGATGTCTTTGTATACTGTATTATATATTTGTCTGTGTGCTGGTGTATTGGGATTTTGCTTCGCTTAGGGGTCTTAATTCTTTTTAATAAACCAGTAAATCTGATCTGATGTTTCCTTTTAATATTTTGGGGGCTGCGTCTCAGGTTGTAGAAGATGGATATGAGTTTTTTGCCAAACGTAAGCTGGTGACTGTATTCTCTGCACCAAATTACTGTGGTGAGTTTGATAATGCCGGTGCTATGATGAGTGTGGATGACTCATTGACATGCTCTTTCCAGATACTGAAGTCTTCCGATAAGAAGGGCAAAGTTGGATTTGGCAATAACTCATCAAGACCTGGAACTCCACCTCATAAGGTAAAAATATAATGATTGTTATGCATGTACTTGTTCGTTAAAACACACGTGATTCTATGTATATGTGTATGGGTGTCTATGTATTGCATGTTTAAATGCATGTCATAAACTTGAATTATAATTAAAGAAGTCAGAAGTTTCATAACTTCAACTAGCAAATATGAAGTTTCATGTCACCTAAGTTGGTTATTGAACATATGATGATATGCCTGATTTTGTGTATAGATTTATATATCATTTTAAGCACTAAGACATTATTTGATTCTATGTATATGTGCATGGGGGTCTATGTATTGCATGTTTAAATGCATAATATAAACTTGAGTTATAACCAAAGAATTCAGAAGTTTCATAACTTCAACTAGTATTAGCAAATATGAAGTTTCATGTCACTTAAGTTGGTTATTGAACACATGATGATATGCCGATTTTGTGTAGATTTATATATCATATTAAGCATCAAGACATCAAAGAAGTCAGAAGTTTCATAACTTCTACTGGTATTGTCGTATTGAACATATAATGATATACCTGATTTTGTGTAGATTTATGTATCATTTTAAGTACTAAGACATGATACAGATAATTCGTTCGAAGTGCATTGCTTTAGAGAAACATCTTGGGTGAAATCCTATGCTGTTACCAAGTTAAGACAAGTTTAAAAACTATTAATGGTTTTCCCATCAAAATTAAAGTGTCCAAAAAGAGATTCAACGTTCGCGGGCATTAGCCATAGACACAATTCACCATTTTCTTGTGGTTTCTAGGGGTATATAAGTGAGAAATGGCTATGCTCTTTGGGGCAATTCTATCTCCCCCTCCCCACCCAAAAAAAAAAAAGCTTCCTGTGGGAGAAGTGACCCCGGCCCTTATGTATACGGGTCGACTAAAATTTTTAGGACTTCATTTATTTACTTTGTAAAATTACTTTAACTGTTTGTTTATAAAAGCATAAGAAAATTGACTTGCTACTTTCTTTTGATTGAATCACATGCTGCATATCTTTTGTGATATTTAATGAGTTCTGGCCATATACCTGTTATTCCAGGGTGGGAAGAATTAA
Protein sequence

>MS.gene048874.t1

MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKDLEGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSDKKGKVGFGNNSSRPGTPPHKGGKN