AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99972

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99972.t1 MTR_8g062430 100.000 306 0 0 1 306 1 306 0.0 643
MS.gene99972.t1 MTR_5g037200 97.386 306 8 0 1 306 1 306 0.0 626
MS.gene99972.t1 MTR_8g085610 79.605 304 62 0 3 306 5 308 0.0 532
MS.gene99972.t1 MTR_7g107310 78.738 301 64 0 6 306 13 313 0.0 523
MS.gene99972.t1 MTR_8g085610 80.919 283 54 0 24 306 2 284 0.0 504
MS.gene99972.t1 MTR_5g093990 66.118 304 101 2 5 306 2 305 1.38e-153 432
MS.gene99972.t1 MTR_5g037200 96.774 186 6 0 1 186 1 186 9.64e-132 373
MS.gene99972.t1 MTR_1g039380 56.954 302 129 1 6 306 2 303 5.45e-129 369
MS.gene99972.t1 MTR_1g039380 59.206 277 112 1 31 306 3 279 9.50e-124 355
MS.gene99972.t1 MTR_1g079950 46.488 299 151 3 4 294 3 300 1.59e-97 290
MS.gene99972.t1 MTR_1g079950 46.488 299 151 3 4 294 3 300 2.26e-97 290
MS.gene99972.t1 MTR_1g079950 46.488 299 151 3 4 294 3 300 3.27e-97 290
MS.gene99972.t1 MTR_1g079950 46.488 299 151 3 4 294 32 329 3.81e-97 290
MS.gene99972.t1 MTR_7g112870 45.819 299 155 3 7 299 10 307 6.98e-96 286
MS.gene99972.t1 MTR_7g116380 45.819 299 153 3 4 294 3 300 2.21e-95 285
MS.gene99972.t1 MTR_7g116380 45.819 299 153 3 4 294 3 300 2.25e-95 285
MS.gene99972.t1 MTR_5g081230 45.763 295 153 3 6 294 24 317 4.38e-95 284
MS.gene99972.t1 MTR_8g098980 48.302 265 135 2 20 283 27 290 2.04e-93 280
MS.gene99972.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 7.38e-93 278
MS.gene99972.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 8.11e-93 278
MS.gene99972.t1 MTR_8g005010 44.138 290 153 3 7 288 4 292 4.84e-92 275
MS.gene99972.t1 MTR_1g043240 45.455 286 154 2 20 304 26 310 5.17e-92 276
MS.gene99972.t1 MTR_1g079950 48.617 253 125 3 54 302 34 285 3.59e-84 256
MS.gene99972.t1 MTR_1g074880 50.207 241 118 2 53 292 4 243 4.40e-83 252
MS.gene99972.t1 MTR_1g074880 50.207 241 118 2 53 292 4 243 4.45e-83 251
MS.gene99972.t1 MTR_4g050540 39.792 289 160 5 24 298 673 961 1.40e-60 208
MS.gene99972.t1 MTR_3g452710 42.857 245 134 5 50 290 222 464 5.84e-60 199
MS.gene99972.t1 MTR_2g100130 38.225 293 170 7 7 290 93 383 2.12e-59 195
MS.gene99972.t1 MTR_3g452710 42.857 245 134 5 50 290 289 531 3.42e-59 198
MS.gene99972.t1 MTR_2g087530 39.041 292 159 7 24 298 555 844 4.94e-59 202
MS.gene99972.t1 MTR_2g087530 39.041 292 159 7 24 298 668 957 1.13e-58 202
MS.gene99972.t1 MTR_1g089370 41.573 267 142 5 20 272 548 814 1.64e-58 201
MS.gene99972.t1 MTR_2g100130 38.225 293 170 7 7 290 163 453 1.90e-58 194
MS.gene99972.t1 MTR_2g100130 38.225 293 170 7 7 290 202 492 2.08e-58 195
MS.gene99972.t1 MTR_2g100130 38.225 293 170 7 7 290 192 482 2.16e-58 195
MS.gene99972.t1 MTR_2g100130 38.276 290 168 7 7 287 202 489 2.53e-57 192
MS.gene99972.t1 MTR_2g100130 38.276 290 167 8 7 287 202 488 5.59e-56 189
MS.gene99972.t1 MTR_2g100130 38.276 290 167 8 7 287 163 449 1.30e-55 187
MS.gene99972.t1 MTR_2g100130 40.000 265 149 6 7 263 202 464 7.97e-55 186
MS.gene99972.t1 MTR_2g100160 41.296 247 138 6 49 290 158 402 1.11e-53 181
MS.gene99972.t1 MTR_8g072600 32.414 290 141 11 26 262 107 394 6.54e-31 120
MS.gene99972.t1 MTR_8g072600 33.193 238 119 9 26 225 107 342 5.19e-27 108
MS.gene99972.t1 MTR_2g099710 30.847 295 130 12 17 262 203 472 3.45e-22 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99972.t1 AT1G10430 93.791 306 19 0 1 306 1 306 0.0 612
MS.gene99972.t1 AT1G10430 93.791 306 19 0 1 306 1 306 0.0 612
MS.gene99972.t1 AT1G59830 93.791 306 19 0 1 306 1 306 0.0 608
MS.gene99972.t1 AT1G69960 91.803 305 25 0 2 306 3 307 0.0 598
MS.gene99972.t1 AT2G42500 78.571 308 64 1 1 306 6 313 0.0 528
MS.gene99972.t1 AT3G58500 78.247 308 65 1 1 306 6 313 0.0 528
MS.gene99972.t1 AT1G59830 92.490 253 19 0 1 253 1 253 2.86e-178 493
MS.gene99972.t1 AT5G55260 66.118 304 101 2 5 306 2 305 1.39e-155 437
MS.gene99972.t1 AT4G26720 65.461 304 103 2 5 306 2 305 3.86e-155 436
MS.gene99972.t1 AT2G42500 67.532 308 51 2 1 306 6 266 4.82e-154 432
MS.gene99972.t1 AT5G55260 58.261 345 101 3 5 306 2 346 4.40e-147 417
MS.gene99972.t1 AT3G19980 56.291 302 131 1 6 306 2 303 9.08e-128 366
MS.gene99972.t1 AT1G50370 55.960 302 132 1 6 306 2 303 1.93e-127 365
MS.gene99972.t1 AT2G39840 47.458 295 148 3 6 294 21 314 1.84e-97 290
MS.gene99972.t1 AT2G29400 46.886 273 144 1 20 292 43 314 1.88e-96 287
MS.gene99972.t1 AT5G27840 47.297 296 149 3 1 290 8 302 1.41e-95 285
MS.gene99972.t1 AT5G27840 47.297 296 149 3 1 290 8 302 1.74e-95 285
MS.gene99972.t1 AT5G27840 47.297 296 149 3 1 290 8 302 1.74e-95 285
MS.gene99972.t1 AT5G27840 47.297 296 149 3 1 290 8 302 2.28e-95 285
MS.gene99972.t1 AT1G64040 49.811 265 131 2 20 283 27 290 9.95e-95 283
MS.gene99972.t1 AT3G05580 46.622 296 151 3 1 290 8 302 4.62e-94 281
MS.gene99972.t1 AT5G43380 47.719 285 140 4 7 283 6 289 1.79e-92 278
MS.gene99972.t1 AT5G43380 47.719 285 140 4 7 283 6 289 1.90e-92 278
MS.gene99972.t1 AT4G11240 47.547 265 137 2 20 283 27 290 2.45e-92 277
MS.gene99972.t1 AT5G43380 47.719 285 140 4 7 283 6 289 2.94e-92 277
MS.gene99972.t1 AT5G59160 45.985 274 146 2 20 292 36 308 1.37e-91 275
MS.gene99972.t1 AT5G59160 45.985 274 146 2 20 292 36 308 1.37e-91 275
MS.gene99972.t1 AT5G59160 45.985 274 146 2 20 292 36 308 1.37e-91 275
MS.gene99972.t1 AT3G46820 45.255 274 148 2 20 292 36 308 1.09e-89 270
MS.gene99972.t1 AT2G42500 72.619 168 41 2 1 163 6 173 3.95e-84 251
MS.gene99972.t1 AT2G42500 75.000 160 35 2 1 155 6 165 5.36e-83 248
MS.gene99972.t1 AT2G42500 70.857 175 44 3 1 170 6 178 8.54e-83 248
MS.gene99972.t1 AT3G05580 48.780 246 119 3 1 240 8 252 9.65e-81 245
MS.gene99972.t1 AT2G42810 42.910 268 143 6 31 290 201 466 2.55e-64 210
MS.gene99972.t1 AT2G42810 42.910 268 143 6 31 290 201 466 2.55e-64 210
MS.gene99972.t1 AT2G42810 42.910 268 143 6 31 290 201 466 2.55e-64 210
MS.gene99972.t1 AT2G42810 42.910 268 143 6 31 290 254 519 6.99e-64 210
MS.gene99972.t1 AT2G42810 42.910 268 143 6 31 290 255 520 8.91e-64 210
MS.gene99972.t1 AT1G03445 42.182 275 142 7 20 279 476 748 9.54e-62 209
MS.gene99972.t1 AT1G03445 42.182 275 142 7 20 279 476 748 1.04e-61 209
MS.gene99972.t1 AT4G03080 41.241 274 147 5 20 279 550 823 5.11e-61 208
MS.gene99972.t1 AT2G27210 39.655 290 160 6 24 298 679 968 2.56e-59 204
MS.gene99972.t1 AT2G27210 39.655 290 160 6 24 298 674 963 2.59e-59 204
MS.gene99972.t1 AT1G08420 40.741 270 146 5 24 279 690 959 6.78e-59 203
MS.gene99972.t1 AT1G08420 40.741 270 146 5 24 279 685 954 7.58e-59 203
MS.gene99972.t1 AT5G63870 33.225 307 138 12 49 291 79 382 6.82e-32 123
MS.gene99972.t1 AT5G63870 33.225 307 138 12 49 291 79 382 6.82e-32 123
MS.gene99972.t1 AT5G63870 37.674 215 93 8 49 225 79 290 1.34e-28 112
MS.gene99972.t1 AT1G48120 31.562 320 151 10 32 283 635 954 8.43e-26 108
MS.gene99972.t1 AT5G10900 27.044 318 175 13 27 293 198 509 2.82e-18 85.5
MS.gene99972.t1 AT5G10900 28.926 242 137 9 27 239 198 433 4.19e-18 85.1
MS.gene99972.t1 AT5G10900 28.926 242 137 9 27 239 198 433 4.36e-18 85.1

Find 97 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACTAATTACCTCTTTA+TGG 0.084088 8.4:+39170026 MS.gene99972:CDS
CCACATCGGTAACAGTAATT+TGG 0.223140 8.4:-39173442 None:intergenic
CGTGGAGACTGTTTCACTTC+TGG 0.243845 8.4:+39171441 MS.gene99972:CDS
ACTGGAAATTGGAGAAAATA+TGG 0.260651 8.4:+39173480 MS.gene99972:CDS
GATGAATGCTTGAGAAAATA+TGG 0.265964 8.4:+39172469 MS.gene99972:CDS
CGATCAAGCTAGGGCCATTC+TGG 0.276005 8.4:+39169894 MS.gene99972:CDS
CATACTAATTACCTCTTTAT+GGG 0.311686 8.4:+39170027 MS.gene99972:CDS
CCATCAGGTGCTCGATTTGC+CGG 0.314120 8.4:-39169831 None:intergenic
ATGGCTGCCATACTGGAAAT+TGG 0.317792 8.4:+39173469 MS.gene99972:CDS
CGTGGTGCTGGATACACATT+TGG 0.338634 8.4:+39173196 MS.gene99972:CDS
GAGTAATTTGACGGCTTTCA+TGG 0.338735 8.4:-39171513 None:intergenic
CTGTTACCGATGTGGGAATA+TGG 0.351002 8.4:+39173450 MS.gene99972:CDS
GGCTCAATTTGCCTGGGTGC+TGG 0.354397 8.4:-39173526 None:intergenic
TACTGCCCTCATTGAGAGTC+AGG 0.370380 8.4:+39172543 MS.gene99972:CDS
TGGGAATATGGCTGCCATAC+TGG 0.390298 8.4:+39173462 MS.gene99972:CDS
CTTATTGAGTTGTTTCGTAT+TGG 0.399765 8.4:+39169991 MS.gene99972:CDS
TAGAGCTCACCAGCTTGTTA+TGG 0.402914 8.4:+39173270 MS.gene99972:CDS
ACTCAATAAGATCATAAAAC+TGG 0.409693 8.4:-39169978 None:intergenic
TGGAGGTCTCTCACCTTCAT+TGG 0.417060 8.4:+39172654 MS.gene99972:CDS
AAGTGTCCTGTCACCGTTTG+CGG 0.417318 8.4:+39169943 MS.gene99972:CDS
AGTGTCGGGCTCAATTTGCC+TGG 0.423275 8.4:-39173533 None:intergenic
CCTGATGATCGCTGTGGGTG+GGG 0.425400 8.4:+39173163 MS.gene99972:CDS
CCCCACCCACAGCGATCATC+AGG 0.426163 8.4:-39173163 None:intergenic
CATACACTTGAGTAATTTGA+CGG 0.445144 8.4:-39171522 None:intergenic
GGAATATCCCCACGTGGTGC+TGG 0.445251 8.4:+39173184 MS.gene99972:CDS
TGGAGTCTTGCGTGTAGTGT+CGG 0.445253 8.4:-39173548 None:intergenic
ATTGAGTTGTTTCGTATTGG+TGG 0.447736 8.4:+39169994 MS.gene99972:CDS
CTCTTTATGGGTGATTATGT+AGG 0.447757 8.4:+39170039 MS.gene99972:CDS
GCTGGTGAGCTCTAGATATG+AGG 0.452749 8.4:-39173261 None:intergenic
TTGTTATGGAAGGATACAAT+TGG 0.456190 8.4:+39173284 MS.gene99972:CDS
AATATGGAAATGCCAACGTC+TGG 0.464018 8.4:+39172485 MS.gene99972:CDS
TCCTGATGATCGCTGTGGGT+GGG 0.465804 8.4:+39173162 MS.gene99972:CDS
ATCTCTGTAACGGACTTTCA+AGG 0.469042 8.4:-39171467 None:intergenic
TCAGAGGCTTGCACTCCATC+AGG 0.472802 8.4:-39169846 None:intergenic
TTCACCTCCGCTTCCGTCAG+AGG 0.478531 8.4:-39169862 None:intergenic
AGGCTCTTTGCGATCAAGCT+AGG 0.485211 8.4:+39169884 MS.gene99972:CDS
TTGAGTTGTTTCGTATTGGT+GGG 0.488530 8.4:+39169995 MS.gene99972:CDS
GGAGTCTTGCGTGTAGTGTC+GGG 0.492442 8.4:-39173547 None:intergenic
ACCGTTTGCGGCGATATTCA+CGG 0.492974 8.4:+39169955 MS.gene99972:CDS
GCCGTGAATATCGCCGCAAA+CGG 0.504478 8.4:-39169956 None:intergenic
CTCTCAATGAGGGCAGTAAG+AGG 0.509482 8.4:-39172538 None:intergenic
ATATCGCCGCAAACGGTGAC+AGG 0.514092 8.4:-39169949 None:intergenic
ATCCTGATGATCGCTGTGGG+TGG 0.515614 8.4:+39173161 MS.gene99972:CDS
TGACAGGACACTTGACAGGC+TGG 0.515948 8.4:-39169933 None:intergenic
ACGGTGACAGGACACTTGAC+AGG 0.523754 8.4:-39169937 None:intergenic
CTACATAATCACCCATAAAG+AGG 0.526191 8.4:-39170038 None:intergenic
TCTGACGGAAGCGGAGGTGA+AGG 0.527508 8.4:+39169864 MS.gene99972:CDS
CGTCTCAAGCGGATCTAGAC+CGG 0.531102 8.4:+39169812 MS.gene99972:CDS
TGTTATGGAAGGATACAATT+GGG 0.532814 8.4:+39173285 MS.gene99972:CDS
CAAATTACTGTTACCGATGT+GGG 0.533275 8.4:+39173443 MS.gene99972:CDS
GTGCAAGCCTCTGACGGAAG+CGG 0.537103 8.4:+39169855 MS.gene99972:CDS
AGATATGAGGGAGAGGCCAT+TGG 0.538544 8.4:-39173248 None:intergenic
GGCTCTTTGCGATCAAGCTA+GGG 0.543574 8.4:+39169885 MS.gene99972:CDS
GTGGTGCTGGATACACATTT+GGG 0.547351 8.4:+39173197 MS.gene99972:CDS
ATAAAGAGGTAATTAGTATG+AGG 0.550822 8.4:-39170024 None:intergenic
CTCACCTTCATTGGATACAC+TGG 0.551568 8.4:+39172663 MS.gene99972:CDS
ACTGGATAACATCAGAGCAT+TGG 0.553616 8.4:+39172681 MS.gene99972:CDS
GATGGAGTGCAAGCCTCTGA+CGG 0.557849 8.4:+39169849 MS.gene99972:CDS
GTTCCACTCTTCAACCAGAA+TGG 0.558462 8.4:-39169908 None:intergenic
TGCTGGATACACATTTGGGC+AGG 0.558690 8.4:+39173201 MS.gene99972:CDS
TTCAATTTGATCCAGCACCC+AGG 0.565144 8.4:+39173515 MS.gene99972:CDS
TTATCCAGTGTATCCAATGA+AGG 0.566154 8.4:-39172667 None:intergenic
GGAGACTGTTTCACTTCTGG+TGG 0.567017 8.4:+39171444 MS.gene99972:CDS
GGAAGGATACAATTGGGCTC+AGG 0.571725 8.4:+39173291 MS.gene99972:CDS
CTGGTGAGCTCTAGATATGA+GGG 0.574822 8.4:-39173260 None:intergenic
CCAAATTACTGTTACCGATG+TGG 0.577639 8.4:+39173442 MS.gene99972:CDS
GTGTCGGGCTCAATTTGCCT+GGG 0.578249 8.4:-39173532 None:intergenic
TGTATCCTTCCATAACAAGC+TGG 0.579948 8.4:-39173279 None:intergenic
TTGTAATTCTATCTCTGTAA+CGG 0.581751 8.4:-39171477 None:intergenic
CCGGCAAATCGAGCACCTGA+TGG 0.583477 8.4:+39169831 MS.gene99972:CDS
AGCATTGGATCGTATTCAAG+AGG 0.590091 8.4:+39172696 MS.gene99972:CDS
TGGATCGATGCCGTCTCAAG+CGG 0.594661 8.4:+39169801 None:intergenic
CGGATCCTGATGATCGCTGT+GGG 0.595343 8.4:+39173158 MS.gene99972:CDS
GAGCTCTAGATATGAGGGAG+AGG 0.596342 8.4:-39173255 None:intergenic
CAAGCCTCTGACGGAAGCGG+AGG 0.596393 8.4:+39169858 MS.gene99972:CDS
GGGCCATTCTGGTTGAAGAG+TGG 0.600636 8.4:+39169905 MS.gene99972:CDS
CGGTCTAGATCCGCTTGAGA+CGG 0.604182 8.4:-39169811 None:intergenic
TCTCAGTTCAATCATACCAA+TGG 0.609973 8.4:+39173232 MS.gene99972:CDS
GGTAAAGAATTTCCAGACGT+TGG 0.612776 8.4:-39172497 None:intergenic
GCTCACCAGCTTGTTATGGA+AGG 0.615138 8.4:+39173274 MS.gene99972:CDS
TCACACATTGGTCCTTCGTG+TGG 0.618298 8.4:-39173124 None:intergenic
TCGAACCTGACTCTCAATGA+GGG 0.619866 8.4:-39172548 None:intergenic
GACCAATGTGTGATCTCTTG+TGG 0.621435 8.4:+39173134 MS.gene99972:CDS
CTCGAACCTGACTCTCAATG+AGG 0.628770 8.4:-39172549 None:intergenic
TGTGTATCCAGCACCACGTG+GGG 0.629248 8.4:-39173191 None:intergenic
CAGAAGTGAAACAGTCTCCA+CGG 0.636967 8.4:-39171440 None:intergenic
AATGTGTGATCTCTTGTGGT+CGG 0.643842 8.4:+39173138 MS.gene99972:CDS
AGGTAAATAATCAAACAAGT+CGG 0.653175 8.4:-39172518 None:intergenic
TCGGATCCTGATGATCGCTG+TGG 0.656549 8.4:+39173157 MS.gene99972:CDS
ATGTGTATCCAGCACCACGT+GGG 0.665979 8.4:-39173192 None:intergenic
ACATTATAGGTTCCACACGA+AGG 0.678528 8.4:+39173112 MS.gene99972:intron
AGATCGTGGATACTATTCCG+TGG 0.679125 8.4:+39171423 MS.gene99972:intron
AATGTGTATCCAGCACCACG+TGG 0.679832 8.4:-39173193 None:intergenic
TGGCAGCCATATTCCCACAT+CGG 0.682984 8.4:-39173456 None:intergenic
GATAGAATTACAATTCTCAG+AGG 0.691020 8.4:+39171487 MS.gene99972:CDS
GACCACAAGAGATCACACAT+TGG 0.740012 8.4:-39173136 None:intergenic
GGGTGGGGAATATCCCCACG+TGG 0.745078 8.4:+39173178 MS.gene99972:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAACAATATTTATTAAA+AGG + chr8.4:39171938-39171957 MS.gene99972:intron 10.0%
!! ATAAAAAATATTTGCCTATT+AGG - chr8.4:39171024-39171043 None:intergenic 15.0%
!! ATAAATGTTGGTATATAATA+CGG + chr8.4:39170413-39170432 MS.gene99972:intron 15.0%
!! ATTTCAAATCTTTGATTAAT+TGG - chr8.4:39172308-39172327 None:intergenic 15.0%
!!! GATATAGTTTTGTTTAAATA+AGG - chr8.4:39170791-39170810 None:intergenic 15.0%
!!! TAATAGGCAAATATTTTTTA+TGG + chr8.4:39171023-39171042 MS.gene99972:intron 15.0%
!!! TATTTTTCTTTAAAATCTGA+GGG + chr8.4:39170838-39170857 MS.gene99972:intron 15.0%
!!! TGTTTTTTTTTGTGATTTTT+TGG + chr8.4:39170066-39170085 MS.gene99972:intron 15.0%
!!! TTATTTTCTTAAATTAGCAT+AGG - chr8.4:39170286-39170305 None:intergenic 15.0%
!!! TTTATGTTGATAACTATTTT+AGG + chr8.4:39173390-39173409 MS.gene99972:intron 15.0%
!! AAACTGTAATTGTACATTAT+AGG + chr8.4:39173099-39173118 MS.gene99972:intron 20.0%
!! AGAATATAGTATATATCAGT+AGG + chr8.4:39170566-39170585 MS.gene99972:intron 20.0%
!! ATGCAGATAGAAATATTATA+GGG + chr8.4:39171828-39171847 MS.gene99972:intron 20.0%
!! CTTCATATATATTGTTTAAC+AGG - chr8.4:39171973-39171992 None:intergenic 20.0%
!! TTGAAATTGAAGTTTGAATT+TGG + chr8.4:39170155-39170174 MS.gene99972:intron 20.0%
!!! AATAAACATTTTGTTTCTAG+TGG - chr8.4:39172358-39172377 None:intergenic 20.0%
!!! AATTTTTGTTGGTTTAATTG+AGG + chr8.4:39172856-39172875 MS.gene99972:intron 20.0%
!!! ACAAAATATTTTTGCACTTT+TGG - chr8.4:39170935-39170954 None:intergenic 20.0%
!!! AGATTAATGTGTTATTAGTT+TGG + chr8.4:39171119-39171138 MS.gene99972:intron 20.0%
!!! ATCATACTCTTTAAAAATGT+GGG - chr8.4:39171249-39171268 None:intergenic 20.0%
!!! ATTTTTGTTGGTTTAATTGA+GGG + chr8.4:39172857-39172876 MS.gene99972:intron 20.0%
!!! GTATTTTTCTTTAAAATCTG+AGG + chr8.4:39170837-39170856 MS.gene99972:intron 20.0%
!!! TATCATACTCTTTAAAAATG+TGG - chr8.4:39171250-39171269 None:intergenic 20.0%
!!! TATTTCTGTTTTTACCTAAT+AGG + chr8.4:39171007-39171026 MS.gene99972:intron 20.0%
!!! TTTTTTTTCCAAATTTGTCA+AGG + chr8.4:39170636-39170655 MS.gene99972:intron 20.0%
! AAATGTTGAGACATAAATGT+TGG + chr8.4:39170401-39170420 MS.gene99972:intron 25.0%
! AATTCTATAGTGCTTATAAG+AGG + chr8.4:39170713-39170732 MS.gene99972:intron 25.0%
! AATTTGATACTTGGAACATT+TGG + chr8.4:39170130-39170149 MS.gene99972:intron 25.0%
! ACAAAATAATCACAACCATA+AGG - chr8.4:39170466-39170485 None:intergenic 25.0%
! ACTCAATAAGATCATAAAAC+TGG - chr8.4:39169981-39170000 None:intergenic 25.0%
! AGGTAAATAATCAAACAAGT+CGG - chr8.4:39172521-39172540 None:intergenic 25.0%
! ATAAAGAGGTAATTAGTATG+AGG - chr8.4:39170027-39170046 None:intergenic 25.0%
! ATCATGAGAATGAAAAATGA+TGG - chr8.4:39171717-39171736 None:intergenic 25.0%
! ATGAAATTGAAAAGTTACGA+GGG + chr8.4:39170532-39170551 MS.gene99972:intron 25.0%
! ATTGGGTAAGGAAAATAATT+GGG - chr8.4:39171605-39171624 None:intergenic 25.0%
! CATACTAATTACCTCTTTAT+GGG + chr8.4:39170027-39170046 MS.gene99972:CDS 25.0%
! CTTATAAGCACTATAGAATT+TGG - chr8.4:39170713-39170732 None:intergenic 25.0%
! GATGCAGATAGAAATATTAT+AGG + chr8.4:39171827-39171846 MS.gene99972:intron 25.0%
! TATGAAATTGAAAAGTTACG+AGG + chr8.4:39170531-39170550 MS.gene99972:intron 25.0%
! TATTGGGTAAGGAAAATAAT+TGG - chr8.4:39171606-39171625 None:intergenic 25.0%
! TCATACTAATTACCTCTTTA+TGG + chr8.4:39170026-39170045 MS.gene99972:CDS 25.0%
! TCCAAGTATCAAATTCAAAT+TGG - chr8.4:39170125-39170144 None:intergenic 25.0%
! TCCAATTTGAATTTGATACT+TGG + chr8.4:39170121-39170140 MS.gene99972:intron 25.0%
! TTCACAACTTAAACATAAGA+CGG - chr8.4:39172817-39172836 None:intergenic 25.0%
! TTGTAATTCTATCTCTGTAA+CGG - chr8.4:39171480-39171499 None:intergenic 25.0%
!! AATATCTGTATTTTACTCTC+TGG + chr8.4:39171057-39171076 MS.gene99972:intron 25.0%
!! TCATACTCTTTAAAAATGTG+GGG - chr8.4:39171248-39171267 None:intergenic 25.0%
!! TTTGATGTTGCAATTTTTGT+TGG + chr8.4:39172845-39172864 MS.gene99972:intron 25.0%
!! TTTTCATTCTCATGATTATG+TGG + chr8.4:39171721-39171740 MS.gene99972:intron 25.0%
!!! ATTAATGAAGCATTGTCATA+AGG - chr8.4:39171397-39171416 None:intergenic 25.0%
!!! ATTTTCTTAGGCTTTTAAGA+TGG + chr8.4:39172953-39172972 MS.gene99972:intron 25.0%
!!! GAAGTTTGAATTTGGAATTT+TGG + chr8.4:39170163-39170182 MS.gene99972:intron 25.0%
!!! GGATGAGATATTTAGTTTTA+GGG + chr8.4:39171742-39171761 MS.gene99972:intron 25.0%
!!! TGGATGAGATATTTAGTTTT+AGG + chr8.4:39171741-39171760 MS.gene99972:intron 25.0%
!!! TTTATTTGTTGAAGTGTTGA+TGG + chr8.4:39170505-39170524 MS.gene99972:intron 25.0%
!!! TTTTTGGTATGAATTTTCTG+TGG + chr8.4:39170082-39170101 MS.gene99972:intron 25.0%
AATACGTTCCTTGACAAATT+TGG - chr8.4:39170647-39170666 None:intergenic 30.0%
AATCGTATCATTCTTGGTAT+GGG + chr8.4:39172171-39172190 MS.gene99972:intron 30.0%
ACTGACAATTGAACTCTATT+GGG - chr8.4:39171622-39171641 None:intergenic 30.0%
ACTGGAAATTGGAGAAAATA+TGG + chr8.4:39173480-39173499 MS.gene99972:CDS 30.0%
ATATGAAGCATGTAACTGAT+AGG + chr8.4:39171985-39172004 MS.gene99972:intron 30.0%
ATCCATAGGTTAGTAATGAA+GGG + chr8.4:39171651-39171670 MS.gene99972:intron 30.0%
ATGATGCACAAATATGATAC+TGG - chr8.4:39171273-39171292 None:intergenic 30.0%
ATTACTAACCTATGGATAGA+CGG - chr8.4:39171648-39171667 None:intergenic 30.0%
CAGAAAACCTGAAATATATC+AGG - chr8.4:39172628-39172647 None:intergenic 30.0%
CATACACTTGAGTAATTTGA+CGG - chr8.4:39171525-39171544 None:intergenic 30.0%
CTAACTTCCTGATATATTTC+AGG + chr8.4:39172618-39172637 MS.gene99972:intron 30.0%
GAAAAATAAGAGAATCACAG+AGG + chr8.4:39172040-39172059 MS.gene99972:intron 30.0%
GAAATATATCAGGAAGTTAG+AGG - chr8.4:39172618-39172637 None:intergenic 30.0%
GAATGAGTAGTAAAATTCCT+TGG + chr8.4:39171857-39171876 MS.gene99972:intron 30.0%
GATAGAATTACAATTCTCAG+AGG + chr8.4:39171487-39171506 MS.gene99972:CDS 30.0%
GATGAATGCTTGAGAAAATA+TGG + chr8.4:39172469-39172488 MS.gene99972:CDS 30.0%
GTATATAATACGGAGTAGTA+TGG + chr8.4:39170423-39170442 MS.gene99972:intron 30.0%
GTATATATCAGTAGGACTTT+AGG + chr8.4:39170574-39170593 MS.gene99972:intron 30.0%
GTTGATATTAACATGCAACA+TGG + chr8.4:39171879-39171898 MS.gene99972:intron 30.0%
TAAACTAGAGAGAAACCTTA+TGG + chr8.4:39170448-39170467 MS.gene99972:intron 30.0%
TAGAAATATTATAGGGTGTG+AGG + chr8.4:39171835-39171854 MS.gene99972:intron 30.0%
TATCCATAGGTTAGTAATGA+AGG + chr8.4:39171650-39171669 MS.gene99972:intron 30.0%
TATTCTGATGCAGTTTCTAT+CGG + chr8.4:39172246-39172265 MS.gene99972:intron 30.0%
TCATTAATTCATACAGATCG+TGG + chr8.4:39171409-39171428 MS.gene99972:intron 30.0%
TCATTAGATATAGCAACAGA+AGG - chr8.4:39173369-39173388 None:intergenic 30.0%
TGAAATTGAAAAGTTACGAG+GGG + chr8.4:39170533-39170552 MS.gene99972:intron 30.0%
TGTTATGGAAGGATACAATT+GGG + chr8.4:39173285-39173304 MS.gene99972:CDS 30.0%
TTCAACAAATAAAGCTTTGC+TGG - chr8.4:39170498-39170517 None:intergenic 30.0%
TTGCATGTTAATATCAACCA+AGG - chr8.4:39171877-39171896 None:intergenic 30.0%
TTGGGTAAGGAAAATAATTG+GGG - chr8.4:39171604-39171623 None:intergenic 30.0%
TTGTTATGGAAGGATACAAT+TGG + chr8.4:39173284-39173303 MS.gene99972:CDS 30.0%
! ATTTTCTCCAATTTCCAGTA+TGG - chr8.4:39173479-39173498 None:intergenic 30.0%
! CTTATTGAGTTGTTTCGTAT+TGG + chr8.4:39169991-39170010 MS.gene99972:CDS 30.0%
! TTTGAAACTGAGGTATATCA+AGG + chr8.4:39170680-39170699 MS.gene99972:intron 30.0%
!! TCTTTTGACTAATTGTATGC+CGG + chr8.4:39172592-39172611 MS.gene99972:intron 30.0%
!! TTTCTTTAAAATCTGAGGGA+AGG + chr8.4:39170842-39170861 MS.gene99972:intron 30.0%
!!! ATTACAGTTTTTAGCATACC+TGG - chr8.4:39173089-39173108 None:intergenic 30.0%
!!! GTGAAACAATTTGGTTTTGT+GGG + chr8.4:39171679-39171698 MS.gene99972:intron 30.0%
!!! TCTCTTATTTTTCCTAACAC+AGG - chr8.4:39172033-39172052 None:intergenic 30.0%
!!! TTACAGTTTTTAGCATACCT+GGG - chr8.4:39173088-39173107 None:intergenic 30.0%
!!! TTGTTGTTTTAATACGCTGT+AGG + chr8.4:39170212-39170231 MS.gene99972:intron 30.0%
!!! TTTTAAGATGGCTCATCTTT+TGG + chr8.4:39172965-39172984 MS.gene99972:intron 30.0%
AAACTGAGGTATATCAAGGT+TGG + chr8.4:39170684-39170703 MS.gene99972:intron 35.0%
AACCCTTCATTACTAACCTA+TGG - chr8.4:39171656-39171675 None:intergenic 35.0%
AATTCCTCTGTCAATAACAG+TGG + chr8.4:39172200-39172219 MS.gene99972:intron 35.0%
ACGATGTTAACTGAATTGCT+TGG + chr8.4:39173051-39173070 MS.gene99972:intron 35.0%
ACTTGGAGTGCATGTTTAAA+AGG + chr8.4:39171905-39171924 MS.gene99972:intron 35.0%
AGGGTTTAGGTGAAACAATT+TGG + chr8.4:39171670-39171689 MS.gene99972:intron 35.0%
AGGTTAGTAATGAAGGGTTT+AGG + chr8.4:39171657-39171676 MS.gene99972:intron 35.0%
ATCGTATCATTCTTGGTATG+GGG + chr8.4:39172172-39172191 MS.gene99972:intron 35.0%
CAAATTACTGTTACCGATGT+GGG + chr8.4:39173443-39173462 MS.gene99972:CDS 35.0%
CAATCGTATCATTCTTGGTA+TGG + chr8.4:39172170-39172189 MS.gene99972:intron 35.0%
CAATTGAACTCTATTGGGTA+AGG - chr8.4:39171617-39171636 None:intergenic 35.0%
CACTGACAATTGAACTCTAT+TGG - chr8.4:39171623-39171642 None:intergenic 35.0%
CTACATAATCACCCATAAAG+AGG - chr8.4:39170041-39170060 None:intergenic 35.0%
CTCTTTATGGGTGATTATGT+AGG + chr8.4:39170039-39170058 MS.gene99972:CDS 35.0%
CTTGGAGTGCATGTTTAAAA+GGG + chr8.4:39171906-39171925 MS.gene99972:intron 35.0%
CTTTGCAATCGTATCATTCT+TGG + chr8.4:39172165-39172184 MS.gene99972:intron 35.0%
TAACAAACAGCATTCCACTA+AGG - chr8.4:39172992-39173011 None:intergenic 35.0%
TATACAGAAGATGCTCAAAG+AGG + chr8.4:39170961-39170980 MS.gene99972:intron 35.0%
TCTCAGTTCAATCATACCAA+TGG + chr8.4:39173232-39173251 MS.gene99972:CDS 35.0%
TTATCCAGTGTATCCAATGA+AGG - chr8.4:39172670-39172689 None:intergenic 35.0%
TTGAACGTAATCATGTGTGT+TGG + chr8.4:39170311-39170330 MS.gene99972:intron 35.0%
! ATATTTCTATCTGCATCCTC+AGG - chr8.4:39171824-39171843 None:intergenic 35.0%
! ATCCTTGCTGCAATTTTCTT+AGG + chr8.4:39172941-39172960 MS.gene99972:intron 35.0%
! ATTGAGTTGTTTCGTATTGG+TGG + chr8.4:39169994-39170013 MS.gene99972:CDS 35.0%
! CTGTTTGAAGTTTGAAACTG+AGG + chr8.4:39170670-39170689 MS.gene99972:intron 35.0%
! TGGTTAGTTAGAAGACTTTG+AGG + chr8.4:39172106-39172125 MS.gene99972:intron 35.0%
! TTAGTTAGAAGACTTTGAGG+TGG + chr8.4:39172109-39172128 MS.gene99972:intron 35.0%
! TTGAGTTGTTTCGTATTGGT+GGG + chr8.4:39169995-39170014 MS.gene99972:CDS 35.0%
!! AACAGAAGGTATTACTCAAG+AGG - chr8.4:39173355-39173374 None:intergenic 35.0%
!! AAGACTTTGAGGTGGTTATA+AGG + chr8.4:39172117-39172136 MS.gene99972:intron 35.0%
!! ACAGAAGGTATTACTCAAGA+GGG - chr8.4:39173354-39173373 None:intergenic 35.0%
!! ACTATTTTAGGAGAAGAACG+TGG + chr8.4:39173402-39173421 MS.gene99972:intron 35.0%
!!! GGTGAAACAATTTGGTTTTG+TGG + chr8.4:39171678-39171697 MS.gene99972:intron 35.0%
AAAATGCCAGCACATCATGT+TGG - chr8.4:39171574-39171593 None:intergenic 40.0%
AACATGCAACATGGATCACT+TGG + chr8.4:39171888-39171907 MS.gene99972:intron 40.0%
AATATGGAAATGCCAACGTC+TGG + chr8.4:39172485-39172504 MS.gene99972:CDS 40.0%
AATGTGTGATCTCTTGTGGT+CGG + chr8.4:39173138-39173157 MS.gene99972:CDS 40.0%
ACATTATAGGTTCCACACGA+AGG + chr8.4:39173112-39173131 MS.gene99972:intron 40.0%
ACTGGATAACATCAGAGCAT+TGG + chr8.4:39172681-39172700 MS.gene99972:CDS 40.0%
AGCCTAAGAAAATTGCAGCA+AGG - chr8.4:39172946-39172965 None:intergenic 40.0%
CCAAATTACTGTTACCGATG+TGG + chr8.4:39173442-39173461 MS.gene99972:CDS 40.0%
CCACATCGGTAACAGTAATT+TGG - chr8.4:39173445-39173464 None:intergenic 40.0%
CTAACTAACCAACAGCTGTT+AGG - chr8.4:39172097-39172116 None:intergenic 40.0%
GAAGAGCTGAAATTGAGTGA+AGG - chr8.4:39171300-39171319 None:intergenic 40.0%
GAGAAATATGTTCCTGCTGA+AGG - chr8.4:39172884-39172903 None:intergenic 40.0%
GAGTAATTTGACGGCTTTCA+TGG - chr8.4:39171516-39171535 None:intergenic 40.0%
GGTAAAGAATTTCCAGACGT+TGG - chr8.4:39172500-39172519 None:intergenic 40.0%
GTGTCAAGTGTCTTTGTCAA+TGG - chr8.4:39170245-39170264 None:intergenic 40.0%
TATATCAGGAAGTTAGAGGC+CGG - chr8.4:39172614-39172633 None:intergenic 40.0%
TCGTATCATTCTTGGTATGG+GGG + chr8.4:39172173-39172192 MS.gene99972:intron 40.0%
TGATGCAGTTTCTATCGGTA+AGG + chr8.4:39172251-39172270 MS.gene99972:intron 40.0%
TGTATCCTTCCATAACAAGC+TGG - chr8.4:39173282-39173301 None:intergenic 40.0%
TGTCAGATACTGACACATGT+CGG + chr8.4:39170334-39170353 MS.gene99972:intron 40.0%
TGTCATAAGGAAATTGCAGC+AGG - chr8.4:39171384-39171403 None:intergenic 40.0%
! ACTGAATTGCTTGGTGATTG+CGG + chr8.4:39173060-39173079 MS.gene99972:intron 40.0%
! AGCATTGGATCGTATTCAAG+AGG + chr8.4:39172696-39172715 MS.gene99972:CDS 40.0%
!! ATCTCTGTAACGGACTTTCA+AGG - chr8.4:39171470-39171489 None:intergenic 40.0%
!!! ACAATTTGGTTTTGTGGGAC+TGG + chr8.4:39171684-39171703 MS.gene99972:intron 40.0%
!!! TTTCAGGTTTTCTGCTTGCA+TGG + chr8.4:39172634-39172653 MS.gene99972:intron 40.0%
AACCAACAGCTGTTAGGTAC+CGG - chr8.4:39172091-39172110 None:intergenic 45.0%
AGATCGTGGATACTATTCCG+TGG + chr8.4:39171423-39171442 MS.gene99972:intron 45.0%
AGTGAAGCTCTGTGATGTCA+CGG + chr8.4:39170597-39170616 MS.gene99972:intron 45.0%
ATGGCTGCCATACTGGAAAT+TGG + chr8.4:39173469-39173488 MS.gene99972:CDS 45.0%
CAGAAGTGAAACAGTCTCCA+CGG - chr8.4:39171443-39171462 None:intergenic 45.0%
CCATACCTGAAAGCAGAAGA+TGG - chr8.4:39172442-39172461 None:intergenic 45.0%
CTCACCTTCATTGGATACAC+TGG + chr8.4:39172663-39172682 MS.gene99972:CDS 45.0%
CTGAAAGCAGAAGATGGAGA+AGG - chr8.4:39172436-39172455 None:intergenic 45.0%
CTGTTACCGATGTGGGAATA+TGG + chr8.4:39173450-39173469 MS.gene99972:CDS 45.0%
CTTCTCCATCTTCTGCTTTC+AGG + chr8.4:39172434-39172453 MS.gene99972:intron 45.0%
GACACACCTTTGAGTAGAGT+GGG + chr8.4:39170363-39170382 MS.gene99972:intron 45.0%
GACCAATGTGTGATCTCTTG+TGG + chr8.4:39173134-39173153 MS.gene99972:CDS 45.0%
GACCACAAGAGATCACACAT+TGG - chr8.4:39173139-39173158 None:intergenic 45.0%
GAGACCACTGTTATTGACAG+AGG - chr8.4:39172207-39172226 None:intergenic 45.0%
GGAGAAGGCTTTCGATGAAA+TGG - chr8.4:39172421-39172440 None:intergenic 45.0%
GTTCCACTCTTCAACCAGAA+TGG - chr8.4:39169911-39169930 None:intergenic 45.0%
TCAGTGAACCGTCTATCCAT+AGG + chr8.4:39171637-39171656 MS.gene99972:intron 45.0%
TCGAACCTGACTCTCAATGA+GGG - chr8.4:39172551-39172570 None:intergenic 45.0%
TTAATTGAGGGACCTTCAGC+AGG + chr8.4:39172869-39172888 MS.gene99972:intron 45.0%
TTCAATTTGATCCAGCACCC+AGG + chr8.4:39173515-39173534 MS.gene99972:CDS 45.0%
TTCTCACCAACATGATGTGC+TGG + chr8.4:39171565-39171584 MS.gene99972:intron 45.0%
TTTGTGCCCACTCTACTCAA+AGG - chr8.4:39170372-39170391 None:intergenic 45.0%
! AAGGAGAGTGAGAGCATATC+AGG + chr8.4:39172136-39172155 MS.gene99972:intron 45.0%
! ACCTTCCGAGTGATAATGAC+CGG + chr8.4:39172069-39172088 MS.gene99972:intron 45.0%
! ACTCTACTCAAAGGTGTGTC+GGG - chr8.4:39170363-39170382 None:intergenic 45.0%
! CACTCTACTCAAAGGTGTGT+CGG - chr8.4:39170364-39170383 None:intergenic 45.0%
! CCATCTTCTGCTTTCAGGTA+TGG + chr8.4:39172439-39172458 MS.gene99972:intron 45.0%
! GCTCATCTTTTGGTCCTTAG+TGG + chr8.4:39172975-39172994 MS.gene99972:intron 45.0%
! GTGGTGCTGGATACACATTT+GGG + chr8.4:39173197-39173216 MS.gene99972:CDS 45.0%
!! AGGTACCGGTCATTATCACT+CGG - chr8.4:39172077-39172096 None:intergenic 45.0%
!! CTGGTGAGCTCTAGATATGA+GGG - chr8.4:39173263-39173282 None:intergenic 45.0%
!! TAGAGCTCACCAGCTTGTTA+TGG + chr8.4:39173270-39173289 MS.gene99972:CDS 45.0%
!!! TGCACTTTTGGTGCTTCAGA+AGG - chr8.4:39170923-39170942 None:intergenic 45.0%
AAGTGTCCTGTCACCGTTTG+CGG + chr8.4:39169943-39169962 MS.gene99972:CDS 50.0%
AATGTGTATCCAGCACCACG+TGG - chr8.4:39173196-39173215 None:intergenic 50.0%
ACCGGTCATTATCACTCGGA+AGG - chr8.4:39172073-39172092 None:intergenic 50.0%
ACCGTTTGCGGCGATATTCA+CGG + chr8.4:39169955-39169974 MS.gene99972:CDS 50.0%
AGATATGAGGGAGAGGCCAT+TGG - chr8.4:39173251-39173270 None:intergenic 50.0%
AGGCTCTTTGCGATCAAGCT+AGG + chr8.4:39169884-39169903 MS.gene99972:CDS 50.0%
ATGTGTATCCAGCACCACGT+GGG - chr8.4:39173195-39173214 None:intergenic 50.0%
ATTGCAGCAGGTATCAGCAG+AGG - chr8.4:39171372-39171391 None:intergenic 50.0%
CGACACACCTTTGAGTAGAG+TGG + chr8.4:39170362-39170381 MS.gene99972:intron 50.0%
CGTGGAGACTGTTTCACTTC+TGG + chr8.4:39171441-39171460 MS.gene99972:CDS 50.0%
CTAACACAGGCCCGACTAAT+CGG - chr8.4:39172020-39172039 None:intergenic 50.0%
CTCGAACCTGACTCTCAATG+AGG - chr8.4:39172552-39172571 None:intergenic 50.0%
CTCTCAATGAGGGCAGTAAG+AGG - chr8.4:39172541-39172560 None:intergenic 50.0%
GGAAGGATACAATTGGGCTC+AGG + chr8.4:39173291-39173310 MS.gene99972:CDS 50.0%
GGAGACTGTTTCACTTCTGG+TGG + chr8.4:39171444-39171463 MS.gene99972:CDS 50.0%
GGCTCTTTGCGATCAAGCTA+GGG + chr8.4:39169885-39169904 MS.gene99972:CDS 50.0%
TAACACAGGCCCGACTAATC+GGG - chr8.4:39172019-39172038 None:intergenic 50.0%
TACTGCCCTCATTGAGAGTC+AGG + chr8.4:39172543-39172562 MS.gene99972:CDS 50.0%
TCACACATTGGTCCTTCGTG+TGG - chr8.4:39173127-39173146 None:intergenic 50.0%
TGCTGGATACACATTTGGGC+AGG + chr8.4:39173201-39173220 MS.gene99972:CDS 50.0%
TGGAGGTCTCTCACCTTCAT+TGG + chr8.4:39172654-39172673 MS.gene99972:CDS 50.0%
TGGAGTCTTGCGTGTAGTGT+CGG - chr8.4:39173551-39173570 None:intergenic 50.0%
TGGCAGCCATATTCCCACAT+CGG - chr8.4:39173459-39173478 None:intergenic 50.0%
TGGGAATATGGCTGCCATAC+TGG + chr8.4:39173462-39173481 MS.gene99972:CDS 50.0%
! CAGGTTTTCTGCTTGCATGG+AGG + chr8.4:39172637-39172656 MS.gene99972:intron 50.0%
! CGTGGTGCTGGATACACATT+TGG + chr8.4:39173196-39173215 MS.gene99972:CDS 50.0%
!! GAGCTCTAGATATGAGGGAG+AGG - chr8.4:39173258-39173277 None:intergenic 50.0%
!! GCTCACCAGCTTGTTATGGA+AGG + chr8.4:39173274-39173293 MS.gene99972:CDS 50.0%
!! GCTGGTGAGCTCTAGATATG+AGG - chr8.4:39173264-39173283 None:intergenic 50.0%
AACACAGGCCCGACTAATCG+GGG - chr8.4:39172018-39172037 None:intergenic 55.0%
ACGGTGACAGGACACTTGAC+AGG - chr8.4:39169940-39169959 None:intergenic 55.0%
ATATCGCCGCAAACGGTGAC+AGG - chr8.4:39169952-39169971 None:intergenic 55.0%
ATCCTGATGATCGCTGTGGG+TGG + chr8.4:39173161-39173180 MS.gene99972:CDS 55.0%
CGATCAAGCTAGGGCCATTC+TGG + chr8.4:39169894-39169913 MS.gene99972:CDS 55.0%
CGGATCCTGATGATCGCTGT+GGG + chr8.4:39173158-39173177 MS.gene99972:CDS 55.0%
CGGTCTAGATCCGCTTGAGA+CGG - chr8.4:39169814-39169833 None:intergenic 55.0%
CGTCTCAAGCGGATCTAGAC+CGG + chr8.4:39169812-39169831 MS.gene99972:CDS 55.0%
GACCGGTACCTAACAGCTGT+TGG + chr8.4:39172086-39172105 MS.gene99972:intron 55.0%
GAGCTGTCTACGAGATCCTG+AGG + chr8.4:39171805-39171824 MS.gene99972:intron 55.0%
GATGGAGTGCAAGCCTCTGA+CGG + chr8.4:39169849-39169868 MS.gene99972:CDS 55.0%
GCCGTGAATATCGCCGCAAA+CGG - chr8.4:39169959-39169978 None:intergenic 55.0%
GGAGTCTTGCGTGTAGTGTC+GGG - chr8.4:39173550-39173569 None:intergenic 55.0%
GTGTCGGGCTCAATTTGCCT+GGG - chr8.4:39173535-39173554 None:intergenic 55.0%
TCAGAGGCTTGCACTCCATC+AGG - chr8.4:39169849-39169868 None:intergenic 55.0%
TCCTGATGATCGCTGTGGGT+GGG + chr8.4:39173162-39173181 MS.gene99972:CDS 55.0%
TCGGATCCTGATGATCGCTG+TGG + chr8.4:39173157-39173176 MS.gene99972:CDS 55.0%
TGACAGGACACTTGACAGGC+TGG - chr8.4:39169936-39169955 None:intergenic 55.0%
TGTGTATCCAGCACCACGTG+GGG - chr8.4:39173194-39173213 None:intergenic 55.0%
! AGTGTCGGGCTCAATTTGCC+TGG - chr8.4:39173536-39173555 None:intergenic 55.0%
! CCATCAGGTGCTCGATTTGC+CGG - chr8.4:39169834-39169853 None:intergenic 55.0%
! CGATTAGTCGGGCCTGTGTT+AGG + chr8.4:39172018-39172037 MS.gene99972:intron 55.0%
! GGGCCATTCTGGTTGAAGAG+TGG + chr8.4:39169905-39169924 MS.gene99972:CDS 55.0%
ACACAGGCCCGACTAATCGG+GGG - chr8.4:39172017-39172036 None:intergenic 60.0%
CCGGCAAATCGAGCACCTGA+TGG + chr8.4:39169831-39169850 MS.gene99972:CDS 60.0%
CCTGATGATCGCTGTGGGTG+GGG + chr8.4:39173163-39173182 MS.gene99972:CDS 60.0%
GGAATATCCCCACGTGGTGC+TGG + chr8.4:39173184-39173203 MS.gene99972:CDS 60.0%
GGCAACAGCCCCCGATTAGT+CGG + chr8.4:39172006-39172025 MS.gene99972:intron 60.0%
GGCTCAATTTGCCTGGGTGC+TGG - chr8.4:39173529-39173548 None:intergenic 60.0%
GTGCAAGCCTCTGACGGAAG+CGG + chr8.4:39169855-39169874 MS.gene99972:CDS 60.0%
TCTGACGGAAGCGGAGGTGA+AGG + chr8.4:39169864-39169883 MS.gene99972:CDS 60.0%
TTCACCTCCGCTTCCGTCAG+AGG - chr8.4:39169865-39169884 None:intergenic 60.0%
! GCAACAGCCCCCGATTAGTC+GGG + chr8.4:39172007-39172026 MS.gene99972:intron 60.0%
CAAGCCTCTGACGGAAGCGG+AGG + chr8.4:39169858-39169877 MS.gene99972:CDS 65.0%
CCCCACCCACAGCGATCATC+AGG - chr8.4:39173166-39173185 None:intergenic 65.0%
GGGTGGGGAATATCCCCACG+TGG + chr8.4:39173178-39173197 MS.gene99972:CDS 65.0%
! GCTTGGTGATTGCGGCACCC+AGG + chr8.4:39173068-39173087 MS.gene99972:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 39169808 39173585 39169808 ID=MS.gene99972
chr8.4 mRNA 39169808 39173585 39169808 ID=MS.gene99972.t1;Parent=MS.gene99972
chr8.4 exon 39169808 39170060 39169808 ID=MS.gene99972.t1.exon1;Parent=MS.gene99972.t1
chr8.4 CDS 39169808 39170060 39169808 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
chr8.4 exon 39171425 39171539 39171425 ID=MS.gene99972.t1.exon2;Parent=MS.gene99972.t1
chr8.4 CDS 39171425 39171539 39171425 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
chr8.4 exon 39172456 39172564 39172456 ID=MS.gene99972.t1.exon3;Parent=MS.gene99972.t1
chr8.4 CDS 39172456 39172564 39172456 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
chr8.4 exon 39172640 39172717 39172640 ID=MS.gene99972.t1.exon4;Parent=MS.gene99972.t1
chr8.4 CDS 39172640 39172717 39172640 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
chr8.4 exon 39173121 39173312 39173121 ID=MS.gene99972.t1.exon5;Parent=MS.gene99972.t1
chr8.4 CDS 39173121 39173312 39173121 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
chr8.4 exon 39173412 39173585 39173412 ID=MS.gene99972.t1.exon6;Parent=MS.gene99972.t1
chr8.4 CDS 39173412 39173585 39173412 ID=cds.MS.gene99972.t1;Parent=MS.gene99972.t1
Gene Sequence

>MS.gene99972

ATGCCGTCTCAAGCGGATCTAGACCGGCAAATCGAGCACCTGATGGAGTGCAAGCCTCTGACGGAAGCGGAGGTGAAGGCTCTTTGCGATCAAGCTAGGGCCATTCTGGTTGAAGAGTGGAACGTCCAGCCTGTCAAGTGTCCTGTCACCGTTTGCGGCGATATTCACGGCCAGTTTTATGATCTTATTGAGTTGTTTCGTATTGGTGGGAATGCTCCTCATACTAATTACCTCTTTATGGGTGATTATGTAGGTGCGTGTTTTTTTTTGTGATTTTTTGGTATGAATTTTCTGTGGTTATGACTCAGAGATTTCCAATTTGAATTTGATACTTGGAACATTTGGTATTGAAATTGAAGTTTGAATTTGGAATTTTGGTTATTAGATCTTGTTGTGTGTAAGTTTTGTTGTTTTAATACGCTGTAGGTTATGAACCATTGACAAAGACACTTGACACGACACTGACACATCGACACCTATGCTAATTTAAGAAAATAACTAAATTGAACGTAATCATGTGTGTTGGTGTCAGATACTGACACATGTCGGACACCCGACACACCTTTGAGTAGAGTGGGCACAAAGAAACGAAGAAATGTTGAGACATAAATGTTGGTATATAATACGGAGTAGTATGGAGTAAACTAGAGAGAAACCTTATGGTTGTGATTATTTTGTATGTTAGTACCAGCAAAGCTTTATTTGTTGAAGTGTTGATGGACGTATGAAATTGAAAAGTTACGAGGGGATTTTTTTATAGAATATAGTATATATCAGTAGGACTTTAGGAGTGAAGCTCTGTGATGTCACGGATCAGTACTTTGATAATTTTTTTTCCAAATTTGTCAAGGAACGTATTATTCTGTTTGAAGTTTGAAACTGAGGTATATCAAGGTTGGTATCCAAATTCTATAGTGCTTATAAGAGGTAGTATGATTCTTCAGCTTTCAATTTCTTATTTTTTTGTTAAGATTTCAATTCCTTATTTAAACAAAACTATATCTCTAAGAAAACTTATTAAGCTTTATTGTATTTTTCTTTAAAATCTGAGGGAAGGACGTGCTTAACTATGTGTTGTGAAGAAGTTAAAAGTTCAGCTTTAGTAAGTGCTACCTTCTGAAGCACCAAAAGTGCAAAAATATTTTGTCTCATCTATACAGAAGATGCTCAAAGAGGAGAGTGTCATTAATATTTGATACTATTTCTGTTTTTACCTAATAGGCAAATATTTTTTATGGAAGTGATATATAATATCTGTATTTTACTCTCTGGTTAGTAATTTTTTATTAGTATGTTATTTTAGATAATAAAAGATTAATGTGTTATTAGTTTGGACTTATAGAATTGCAAACATATATTTATTAATTTCAACATATATTTACTATGTTTTATGATTACTTTGATGCATATCTATATTTCAGTTGACATCATTTATTGCCCCACATTTTTAAAGAGTATGATACCAGTATCATATTTGTGCATCATATCGCCTTCACTCAATTTCAGCTCTTCTATCATCTTACTGCTTTTAATTGTTTTCTAATTATAATTATAATATACACCTCTGCTGATACCTGCTGCAATTTCCTTATGACAATGCTTCATTAATTCATACAGATCGTGGATACTATTCCGTGGAGACTGTTTCACTTCTGGTGGCCTTGAAAGTCCGTTACAGAGATAGAATTACAATTCTCAGAGGAAACCATGAAAGCCGTCAAATTACTCAAGTGTATGCACTACTTCTCATTATATGTTTCTCACCAACATGATGTGCTGGCATTTTTGTTAAGCCCCAATTATTTTCCTTACCCAATAGAGTTCAATTGTCAGTGAACCGTCTATCCATAGGTTAGTAATGAAGGGTTTAGGTGAAACAATTTGGTTTTGTGGGACTGGAATTCTTCCATCATTTTTCATTCTCATGATTATGTGGATGAGATATTTAGTTTTAGGGAATAAATTCAAATAATATGATATATGTTCGTTGTTGTTTTGAGCTGTCTACGAGATCCTGAGGATGCAGATAGAAATATTATAGGGTGTGAGGAATGAGTAGTAAAATTCCTTGGTTGATATTAACATGCAACATGGATCACTTGGAGTGCATGTTTAAAAGGGCACACTAACTGTAAACAATATTTATTAAAAGGACTCACTAACCTGTTAAACAATATATATGAAGCATGTAACTGATAGGCAACAGCCCCCGATTAGTCGGGCCTGTGTTAGGAAAAATAAGAGAATCACAGAGGATCATAACCTTCCGAGTGATAATGACCGGTACCTAACAGCTGTTGGTTAGTTAGAAGACTTTGAGGTGGTTATAAGGAGAGTGAGAGCATATCAGGAAGTATCTTTGCAATCGTATCATTCTTGGTATGGGGGAGTTAATTCCTCTGTCAATAACAGTGGTCTCTGTTTTTCATTTTTTTCTTTATTCTGATGCAGTTTCTATCGGTAAGGTGCATCTGTGTGACACTTGTTAATGTTAACACCAATTAATCAAAGATTTGAAATAGAAAAAGAAAAAAAAATCTCTATAAACCACTAGAAACAAAATGTTTATTTTAATATGAAAATAAAAAAATGTTTGAATCTGTTGCTTTGCCATTTCATCGAAAGCCTTCTCCATCTTCTGCTTTCAGGTATGGCTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAACGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTACCTCTTACTGCCCTCATTGAGAGTCAGGTTCGAGTTATATATGTTGCAGAACATTCTTTTGACTAATTGTATGCCGGCCTCTAACTTCCTGATATATTTCAGGTTTTCTGCTTGCATGGAGGTCTCTCACCTTCATTGGATACACTGGATAACATCAGAGCATTGGATCGTATTCAAGAGGTTTGTGTGTAGCTTAATGCTATGCATTGTCTTTTGATTCATTTGATAATAAGAGCAGTTTTTTTTATCTGAAGAATGACATCTTGAGCTAAACATCCGTCTTATGTTTAAGTTGTGAAATACTTGATTTGATGTTGCAATTTTTGTTGGTTTAATTGAGGGACCTTCAGCAGGAACATATTTCTCATACAATTTTTTTTAATCAAATATCTTGTATGCTATCATCCTTGCTGCAATTTTCTTAGGCTTTTAAGATGGCTCATCTTTTGGTCCTTAGTGGAATGCTGTTTGTTAATACTGATATTGTCTTGACATGTATTGACAATGTTATTGACGATGTTAACTGAATTGCTTGGTGATTGCGGCACCCAGGTATGCTAAAAACTGTAATTGTACATTATAGGTTCCACACGAAGGACCAATGTGTGATCTCTTGTGGTCGGATCCTGATGATCGCTGTGGGTGGGGAATATCCCCACGTGGTGCTGGATACACATTTGGGCAGGATATAGCTTCTCAGTTCAATCATACCAATGGCCTCTCCCTCATATCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGGCTCAGGTGACTGACAAATATTTTAAATCAGTTAATTATATTTACCCTCTTGAGTAATACCTTCTGTTGCTATATCTAATGACTTTATGTTGATAACTATTTTAGGAGAAGAACGTGGTCACTGTATTTAGTGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTGGAAATTGGAGAAAATATGGATCAAAATTTTCTTCAATTTGATCCAGCACCCAGGCAAATTGAGCCCGACACTACACGCAAGACTCCAGACTATTTTTTATAA
Protein sequence

>MS.gene99972.t1

MPSQADLDRQIEHLMECKPLTEAEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPHTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWAQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL