AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032713

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032713.t1 MTR_5g037200 100.000 306 0 0 1 306 1 306 0.0 642
MS.gene032713.t1 MTR_8g062430 97.386 306 8 0 1 306 1 306 0.0 626
MS.gene032713.t1 MTR_8g085610 80.263 304 60 0 3 306 5 308 0.0 534
MS.gene032713.t1 MTR_7g107310 79.070 301 63 0 6 306 13 313 0.0 522
MS.gene032713.t1 MTR_8g085610 81.915 282 51 0 25 306 3 284 0.0 504
MS.gene032713.t1 MTR_5g093990 66.118 304 101 2 5 306 2 305 1.54e-152 429
MS.gene032713.t1 MTR_5g037200 100.000 186 0 0 1 186 1 186 2.15e-136 385
MS.gene032713.t1 MTR_1g039380 55.960 302 132 1 6 306 2 303 8.03e-128 367
MS.gene032713.t1 MTR_1g039380 58.484 277 114 1 31 306 3 279 2.54e-123 354
MS.gene032713.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 2.96e-95 285
MS.gene032713.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 3.16e-95 285
MS.gene032713.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 3.48e-95 285
MS.gene032713.t1 MTR_7g112870 46.154 299 154 3 7 299 10 307 4.64e-95 284
MS.gene032713.t1 MTR_1g079950 45.819 299 153 3 4 294 32 329 5.54e-95 285
MS.gene032713.t1 MTR_5g081230 46.102 295 152 3 6 294 24 317 3.99e-94 281
MS.gene032713.t1 MTR_7g116380 47.826 276 142 2 20 294 26 300 5.71e-94 281
MS.gene032713.t1 MTR_7g116380 47.826 276 142 2 20 294 26 300 7.59e-94 281
MS.gene032713.t1 MTR_8g098980 48.679 265 134 2 20 283 27 290 2.02e-93 280
MS.gene032713.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 1.71e-91 275
MS.gene032713.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 1.82e-91 275
MS.gene032713.t1 MTR_8g005010 44.483 290 152 3 7 288 4 292 1.87e-91 274
MS.gene032713.t1 MTR_1g043240 45.804 286 153 2 20 304 26 310 2.47e-91 275
MS.gene032713.t1 MTR_1g079950 48.617 253 125 3 54 302 34 285 2.38e-83 254
MS.gene032713.t1 MTR_1g074880 50.622 241 117 2 53 292 4 243 1.28e-82 250
MS.gene032713.t1 MTR_1g074880 50.622 241 117 2 53 292 4 243 1.38e-82 250
MS.gene032713.t1 MTR_4g050540 39.792 289 160 5 24 298 673 961 7.60e-60 206
MS.gene032713.t1 MTR_3g452710 42.449 245 135 5 50 290 222 464 1.58e-59 197
MS.gene032713.t1 MTR_2g100130 37.884 293 171 7 7 290 93 383 5.77e-59 194
MS.gene032713.t1 MTR_3g452710 42.449 245 135 5 50 290 289 531 8.36e-59 197
MS.gene032713.t1 MTR_2g087530 39.932 293 155 8 24 298 555 844 3.76e-58 200
MS.gene032713.t1 MTR_2g100130 37.884 293 171 7 7 290 192 482 5.35e-58 194
MS.gene032713.t1 MTR_2g087530 39.932 293 155 8 24 298 668 957 5.83e-58 201
MS.gene032713.t1 MTR_2g100130 37.884 293 171 7 7 290 163 453 6.21e-58 193
MS.gene032713.t1 MTR_2g100130 37.884 293 171 7 7 290 202 492 6.77e-58 194
MS.gene032713.t1 MTR_1g089370 41.825 263 139 5 24 272 552 814 1.55e-57 199
MS.gene032713.t1 MTR_2g100130 37.931 290 169 7 7 287 202 489 1.02e-56 191
MS.gene032713.t1 MTR_2g100130 37.931 290 168 8 7 287 202 488 2.68e-55 187
MS.gene032713.t1 MTR_2g100130 37.931 290 168 8 7 287 163 449 3.68e-55 186
MS.gene032713.t1 MTR_2g100130 44.749 219 115 5 49 263 248 464 2.45e-54 184
MS.gene032713.t1 MTR_2g100160 40.891 247 139 6 49 290 158 402 2.37e-53 180
MS.gene032713.t1 MTR_8g072600 32.414 290 141 10 26 262 107 394 2.08e-31 122
MS.gene032713.t1 MTR_8g072600 33.333 252 120 8 20 225 93 342 1.52e-27 110
MS.gene032713.t1 MTR_2g099710 31.010 287 124 12 25 262 211 472 1.03e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032713.t1 AT1G10430 94.771 306 16 0 1 306 1 306 0.0 617
MS.gene032713.t1 AT1G10430 94.771 306 16 0 1 306 1 306 0.0 617
MS.gene032713.t1 AT1G59830 94.444 306 17 0 1 306 1 306 0.0 612
MS.gene032713.t1 AT1G69960 91.803 305 25 0 2 306 3 307 0.0 599
MS.gene032713.t1 AT2G42500 80.066 301 60 0 6 306 13 313 0.0 526
MS.gene032713.t1 AT3G58500 78.571 308 64 1 1 306 6 313 0.0 525
MS.gene032713.t1 AT1G59830 93.281 253 17 0 1 253 1 253 5.41e-180 497
MS.gene032713.t1 AT5G55260 66.118 304 101 2 5 306 2 305 3.06e-154 434
MS.gene032713.t1 AT4G26720 65.461 304 103 2 5 306 2 305 1.30e-153 432
MS.gene032713.t1 AT2G42500 68.771 301 47 1 6 306 13 266 2.72e-153 430
MS.gene032713.t1 AT5G55260 58.261 345 101 3 5 306 2 346 9.71e-146 414
MS.gene032713.t1 AT3G19980 55.960 302 132 1 6 306 2 303 1.69e-127 366
MS.gene032713.t1 AT1G50370 55.298 302 134 1 6 306 2 303 2.66e-126 363
MS.gene032713.t1 AT2G29400 47.253 273 143 1 20 292 43 314 7.15e-96 286
MS.gene032713.t1 AT2G39840 47.119 295 149 3 6 294 21 314 9.48e-96 286
MS.gene032713.t1 AT5G27840 47.635 296 148 3 1 290 8 302 1.40e-94 283
MS.gene032713.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.24e-94 283
MS.gene032713.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.37e-94 282
MS.gene032713.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.37e-94 282
MS.gene032713.t1 AT3G05580 47.586 290 145 3 7 290 14 302 2.36e-93 280
MS.gene032713.t1 AT1G64040 49.434 265 132 2 20 283 27 290 3.89e-93 279
MS.gene032713.t1 AT5G43380 46.667 285 143 3 7 283 6 289 3.64e-91 275
MS.gene032713.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene032713.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene032713.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene032713.t1 AT5G43380 46.667 285 143 3 7 283 6 289 5.58e-91 274
MS.gene032713.t1 AT4G11240 47.547 265 137 2 20 283 27 290 6.46e-91 273
MS.gene032713.t1 AT5G43380 46.667 285 143 3 7 283 6 289 7.04e-91 273
MS.gene032713.t1 AT3G46820 45.620 274 147 2 20 292 36 308 6.13e-89 268
MS.gene032713.t1 AT2G42500 73.214 168 40 2 1 163 6 173 2.94e-84 251
MS.gene032713.t1 AT2G42500 75.625 160 34 2 1 155 6 165 4.92e-83 248
MS.gene032713.t1 AT2G42500 70.857 175 44 3 1 170 6 178 1.20e-82 247
MS.gene032713.t1 AT3G05580 49.187 246 118 3 1 240 8 252 4.42e-80 243
MS.gene032713.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene032713.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene032713.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene032713.t1 AT2G42810 42.537 268 144 6 31 290 255 520 4.00e-63 208
MS.gene032713.t1 AT2G42810 42.537 268 144 6 31 290 254 519 4.31e-63 208
MS.gene032713.t1 AT4G03080 41.481 270 144 5 24 279 554 823 5.91e-60 205
MS.gene032713.t1 AT1G03445 41.328 271 142 7 24 279 480 748 1.36e-59 203
MS.gene032713.t1 AT1G03445 41.328 271 142 7 24 279 480 748 1.64e-59 203
MS.gene032713.t1 AT2G27210 39.655 290 160 6 24 298 674 963 1.20e-58 202
MS.gene032713.t1 AT2G27210 39.655 290 160 6 24 298 679 968 1.22e-58 202
MS.gene032713.t1 AT1G08420 40.741 270 146 5 24 279 685 954 4.25e-58 201
MS.gene032713.t1 AT1G08420 40.741 270 146 5 24 279 690 959 4.49e-58 201
MS.gene032713.t1 AT5G63870 32.353 306 142 11 49 291 79 382 1.71e-31 122
MS.gene032713.t1 AT5G63870 32.353 306 142 11 49 291 79 382 1.71e-31 122
MS.gene032713.t1 AT5G63870 36.449 214 97 7 49 225 79 290 2.34e-28 111
MS.gene032713.t1 AT1G48120 32.087 321 148 11 32 283 635 954 1.48e-26 110
MS.gene032713.t1 AT5G10900 28.514 249 143 9 20 239 191 433 8.15e-19 87.0
MS.gene032713.t1 AT5G10900 28.514 249 143 9 20 239 191 433 9.24e-19 87.0
MS.gene032713.t1 AT5G10900 28.514 249 143 9 20 239 191 433 9.53e-19 87.0

Find 84 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTAATTATCTCTTTA+TGG 0.113568 5.4:+26798227 MS.gene032713:CDS
CCACATCGGTAGCAGTAATT+TGG 0.207567 5.4:-26801814 None:intergenic
GATGAATGCTTGAGAAAATA+TGG 0.265964 5.4:+26800842 MS.gene032713:CDS
AGTGGAGACTGTTTCACTTT+TGG 0.279854 5.4:+26800126 MS.gene032713:CDS
ATGGCTGCCATTCTGGAAAT+TGG 0.280680 5.4:+26801841 MS.gene032713:CDS
TGGGAATATGGCTGCCATTC+TGG 0.284450 5.4:+26801834 MS.gene032713:CDS
GATACTAATTATCTCTTTAT+GGG 0.296309 5.4:+26798228 MS.gene032713:CDS
CTGCTACCGATGTGGGAATA+TGG 0.319446 5.4:+26801822 MS.gene032713:CDS
TGGAGGTCTCTCACCATCTT+TGG 0.327030 5.4:+26801026 MS.gene032713:CDS
TCTGGAAATTGGAGAGAATA+TGG 0.342558 5.4:+26801852 MS.gene032713:CDS
CATGGAGTGCAAGCCTTTAC+CGG 0.348936 5.4:+26798050 MS.gene032713:CDS
GACTGCCCTCATTGAGAGTC+AGG 0.351563 5.4:+26800916 MS.gene032713:CDS
ACCGGTGAAGTGTCCGGTTA+CGG 0.359368 5.4:+26798137 MS.gene032713:CDS
CCCAGACGATCGTTGTGGTT+GGG 0.364879 5.4:+26801545 MS.gene032713:CDS
GGCTCAATTTGCCTTGGAGC+TGG 0.369766 5.4:-26801898 None:intergenic
CCCCAACCACAACGATCGTC+TGG 0.379839 5.4:-26801546 None:intergenic
GAGATAGAATTACAATTCTC+AGG 0.380189 5.4:+26800170 MS.gene032713:CDS
ACGGTTTGTGGTGATATTCA+TGG 0.413148 5.4:+26798156 MS.gene032713:CDS
CTTACACTTGAGTAATTTGA+CGG 0.424338 5.4:-26800207 None:intergenic
TTCACATCCGCCTCCGGTAA+AGG 0.440700 5.4:-26798063 None:intergenic
ATATCACCACAAACCGTAAC+CGG 0.441931 5.4:-26798150 None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG 0.441934 5.4:+26798144 MS.gene032713:CDS
CCAGACGATCGTTGTGGTTG+GGG 0.450228 5.4:+26801546 MS.gene032713:CDS
AATATGGAAATGCCAATGTC+TGG 0.452706 5.4:+26800858 MS.gene032713:CDS
CGTGGTGCTGGATATACGTT+TGG 0.454119 5.4:+26801579 MS.gene032713:CDS
GGTATATCTCCACGTGGTGC+TGG 0.461540 5.4:+26801567 MS.gene032713:CDS
CGTTCAACCGGTGAAGTGTC+CGG 0.468440 5.4:+26798131 MS.gene032713:CDS
CCGCGCCTTGGATCGCATAC+AGG 0.472606 5.4:+26801065 MS.gene032713:CDS
TGAGGAATGGAACGTTCAAC+CGG 0.483631 5.4:+26798119 MS.gene032713:CDS
GGTGTCTTTCGTGTAGTGTC+AGG 0.485525 5.4:-26801919 None:intergenic
CTCTTTATGGGAGATTATGT+AGG 0.493968 5.4:+26798240 MS.gene032713:CDS
ACCCAGACGATCGTTGTGGT+TGG 0.495708 5.4:+26801544 MS.gene032713:CDS
GTGTCAGGCTCAATTTGCCT+TGG 0.498966 5.4:-26801904 None:intergenic
AGCGCCTTCACATCCGCCTC+CGG 0.505019 5.4:-26798069 None:intergenic
GGGCGATTCTTGTTGAGGAA+TGG 0.507448 5.4:+26798106 MS.gene032713:CDS
GGTAAAGAATTTCCAGACAT+TGG 0.508637 5.4:-26800870 None:intergenic
ATTCTCTCCAATTTCCAGAA+TGG 0.510452 5.4:-26801848 None:intergenic
TCGGATTGGTGGAAATGCTC+CGG 0.512157 5.4:+26798206 MS.gene032713:CDS
TCAATATAGGTTCCGCATGA+AGG 0.513509 5.4:+26801495 MS.gene032713:intron
AGGTAAATAATCAAACAAAT+CGG 0.517054 5.4:-26800891 None:intergenic
ATAAAGAGATAATTAGTATC+CGG 0.517202 5.4:-26798225 None:intergenic
GCTCAGTTCAATCACACAAA+TGG 0.518477 5.4:+26801615 MS.gene032713:CDS
CCAAATTACTGCTACCGATG+TGG 0.523948 5.4:+26801814 MS.gene032713:CDS
ACTGGATAATATCCGCGCCT+TGG 0.529586 5.4:+26801053 MS.gene032713:CDS
CAAATTACTGCTACCGATGT+GGG 0.532060 5.4:+26801815 MS.gene032713:CDS
GTGCAAGCCTTTACCGGAGG+CGG 0.534349 5.4:+26798056 MS.gene032713:CDS
TCGGCAGATCGAGAGTCTCA+TGG 0.543255 5.4:+26798032 MS.gene032713:CDS
CTCACCATCTTTGGATACAC+TGG 0.543454 5.4:+26801035 MS.gene032713:CDS
AGCGAGGGCGATTCTTGTTG+AGG 0.545800 5.4:+26798101 MS.gene032713:CDS
TTATCCAGTGTATCCAAAGA+TGG 0.549296 5.4:-26801039 None:intergenic
TTTACCGGAGGCGGATGTGA+AGG 0.556113 5.4:+26798065 MS.gene032713:CDS
CGATCCAGATCCGCGTGTGA+CGG 0.559405 5.4:-26798012 None:intergenic
TGCTGGATATACGTTTGGAC+AGG 0.564091 5.4:+26801584 MS.gene032713:CDS
ACCGTAACCGGACACTTCAC+CGG 0.565155 5.4:-26798138 None:intergenic
GGCGCTATGCGATCAAGCGA+GGG 0.566727 5.4:+26798086 MS.gene032713:CDS
TAGAGCTCATCAGCTTGTGA+TGG 0.570025 5.4:+26801653 MS.gene032713:CDS
AGATAGAATTACAATTCTCA+GGG 0.575342 5.4:+26800171 MS.gene032713:CDS
CATAAATTTATGCAGATCGT+GGG 0.576093 5.4:+26800095 MS.gene032713:intron
GACCAATGTGTGATCTCTTG+TGG 0.576863 5.4:+26801517 MS.gene032713:CDS
CGTCACACGCGGATCTGGAT+CGG 0.578779 5.4:+26798013 MS.gene032713:CDS
CCCAACCACAACGATCGTCT+GGG 0.580244 5.4:-26801545 None:intergenic
GCTCATCAGCTTGTGATGGA+AGG 0.582864 5.4:+26801657 MS.gene032713:CDS
TGCAGTTTGATCCAGCTCCA+AGG 0.585413 5.4:+26801887 MS.gene032713:CDS
AACCTCCTGTATGCGATCCA+AGG 0.586881 5.4:-26801070 None:intergenic
TTCAAACCTGACTCTCAATG+AGG 0.590959 5.4:-26800922 None:intergenic
AGGCGCTATGCGATCAAGCG+AGG 0.591197 5.4:+26798085 MS.gene032713:CDS
TTCAACCATGCCGTCACACG+CGG 0.601853 5.4:+26798002 None:intergenic
CGCCTTGGATCGCATACAGG+AGG 0.602261 5.4:+26801068 MS.gene032713:CDS
TCAAACCTGACTCTCAATGA+GGG 0.610004 5.4:-26800921 None:intergenic
TTGTGATGGAAGGATACAAT+TGG 0.613571 5.4:+26801667 MS.gene032713:CDS
CTCTCAATGAGGGCAGTCAG+AGG 0.620691 5.4:-26800911 None:intergenic
GGAAGGATACAATTGGTGCC+AGG 0.622019 5.4:+26801674 MS.gene032713:CDS
TGACACTACACGAAAGACAC+CGG 0.642789 5.4:+26801921 MS.gene032713:CDS
TCACACATTGGTCCTTCATG+CGG 0.659593 5.4:-26801507 None:intergenic
CCTGTATGCGATCCAAGGCG+CGG 0.673253 5.4:-26801065 None:intergenic
GGAGTGCAAGCCTTTACCGG+AGG 0.673342 5.4:+26798053 MS.gene032713:CDS
TGGCAGCCATATTCCCACAT+CGG 0.677796 5.4:-26801828 None:intergenic
AGATCGTGGGTACTATTCAG+TGG 0.679198 5.4:+26800108 MS.gene032713:intron
ACTCGTTTAGGAGAAGAATG+TGG 0.692802 5.4:+26801774 MS.gene032713:intron
TCTGACCCAGACGATCGTTG+TGG 0.702404 5.4:+26801540 MS.gene032713:CDS
AACGTATATCCAGCACCACG+TGG 0.705317 5.4:-26801576 None:intergenic
GATAGAATTACAATTCTCAG+GGG 0.726280 5.4:+26800172 MS.gene032713:CDS
GACCACAAGAGATCACACAT+TGG 0.731997 5.4:-26801519 None:intergenic
GGTTGGGGTATATCTCCACG+TGG 0.804235 5.4:+26801561 MS.gene032713:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATGAAATATTAAATGA+GGG - chr5.4:26801408-26801427 None:intergenic 15.0%
!! CTATAAATTATAACACAATA+CGG - chr5.4:26799306-26799325 None:intergenic 15.0%
!! TAGTATCAAATAATTTACAT+TGG - chr5.4:26801136-26801155 None:intergenic 15.0%
!! TATTGAGTTTGATATATTAT+TGG + chr5.4:26798701-26798720 MS.gene032713:intron 15.0%
!! TTGAATATAAGAAACATAAA+AGG + chr5.4:26800762-26800781 MS.gene032713:intron 15.0%
!!! ACATAAAAGGAATTTTATTT+TGG + chr5.4:26800775-26800794 MS.gene032713:intron 15.0%
!!! AGGTTAATTTGATTTATTTA+GGG + chr5.4:26798312-26798331 MS.gene032713:intron 15.0%
!!! ATAGTTATTTCAGTTTTTTA+AGG + chr5.4:26798666-26798685 MS.gene032713:intron 15.0%
!!! TAAGGTTTGATTTTTTATTT+TGG + chr5.4:26798550-26798569 MS.gene032713:intron 15.0%
!!! TATATATAGTGTTTTGTTTT+CGG + chr5.4:26798370-26798389 MS.gene032713:intron 15.0%
!!! TTTGTAGTTTAATTTTGATA+CGG + chr5.4:26799037-26799056 MS.gene032713:intron 15.0%
!! AAATTTATGCCAGAATTATT+AGG - chr5.4:26800084-26800103 None:intergenic 20.0%
!! AGGTAAATAATCAAACAAAT+CGG - chr5.4:26800894-26800913 None:intergenic 20.0%
!! ATAAAGAGATAATTAGTATC+CGG - chr5.4:26798228-26798247 None:intergenic 20.0%
!! CAGAAATGAAATATTAAATG+AGG - chr5.4:26801409-26801428 None:intergenic 20.0%
!! GATACTAATTATCTCTTTAT+GGG + chr5.4:26798228-26798247 MS.gene032713:CDS 20.0%
!! TATTAAATGGCTATTATAAC+TGG + chr5.4:26801100-26801119 MS.gene032713:intron 20.0%
!!! ACAATTTTGCTTTTCAATAT+AGG + chr5.4:26801482-26801501 MS.gene032713:intron 20.0%
!!! ACTTGTCTTTTTATTTTTCT+TGG + chr5.4:26799420-26799439 MS.gene032713:intron 20.0%
!!! GAGGTTAATTTGATTTATTT+AGG + chr5.4:26798311-26798330 MS.gene032713:intron 20.0%
!!! GGATATACATATCATTTTAT+GGG + chr5.4:26799514-26799533 MS.gene032713:intron 20.0%
!!! GTTACTGTAATATATTTTGA+GGG + chr5.4:26799899-26799918 MS.gene032713:intron 20.0%
!!! TCTAAAATCAAACATATGAT+TGG - chr5.4:26799096-26799115 None:intergenic 20.0%
!!! TGATACTAAGAACATTTTTA+TGG + chr5.4:26801148-26801167 MS.gene032713:intron 20.0%
!!! TGGATATACATATCATTTTA+TGG + chr5.4:26799513-26799532 MS.gene032713:intron 20.0%
!!! TGTTACTGTAATATATTTTG+AGG + chr5.4:26799898-26799917 MS.gene032713:intron 20.0%
!!! TTATGATGTTTTCTGAAAAA+TGG + chr5.4:26798828-26798847 MS.gene032713:intron 20.0%
!!! TTCATGTATGATAGAATTTT+TGG + chr5.4:26799482-26799501 MS.gene032713:intron 20.0%
!!! TTTATTTAGGGTTTGATTAT+TGG + chr5.4:26798324-26798343 MS.gene032713:intron 20.0%
! AATTAGATTATTTGCATCTG+TGG + chr5.4:26800043-26800062 MS.gene032713:intron 25.0%
! AGATAGAATTACAATTCTCA+GGG + chr5.4:26800171-26800190 MS.gene032713:CDS 25.0%
! AGCTGAATTAGATGTATATA+GGG + chr5.4:26798416-26798435 MS.gene032713:intron 25.0%
! ATGAATCAATCTAAGTGTTA+CGG - chr5.4:26801708-26801727 None:intergenic 25.0%
! ATTAGATTATTTGCATCTGT+GGG + chr5.4:26800044-26800063 MS.gene032713:intron 25.0%
! CAGAAAATCTGCAATAAAAA+AGG - chr5.4:26801000-26801019 None:intergenic 25.0%
! CCTCAAGAAAACAAAAAATT+AGG - chr5.4:26798295-26798314 None:intergenic 25.0%
! CTACAATTTCCTAATAATTC+TGG + chr5.4:26800072-26800091 MS.gene032713:intron 25.0%
! CTTGCTTAAAGTTTAAGAAT+AGG + chr5.4:26800309-26800328 MS.gene032713:intron 25.0%
! GAATTATTAGGAAATTGTAG+TGG - chr5.4:26800072-26800091 None:intergenic 25.0%
! GGATACTAATTATCTCTTTA+TGG + chr5.4:26798227-26798246 MS.gene032713:CDS 25.0%
! GTTGTATTTGTTTGACTAAT+TGG + chr5.4:26798870-26798889 MS.gene032713:intron 25.0%
! TAAAACACAAACACAATGAA+TGG - chr5.4:26800360-26800379 None:intergenic 25.0%
! TAAGTTTGAGCTCAAAAAAT+TGG + chr5.4:26799610-26799629 MS.gene032713:intron 25.0%
! TACTAGATTCAGATGTAATA+AGG + chr5.4:26799961-26799980 MS.gene032713:intron 25.0%
! TATATCTTTCTCAGTATTCT+GGG + chr5.4:26800489-26800508 MS.gene032713:intron 25.0%
! TTGTTCTTGAGATGAATTAT+TGG + chr5.4:26798579-26798598 MS.gene032713:intron 25.0%
!! ACTTAGATTGATTCATTTCA+AGG + chr5.4:26801712-26801731 MS.gene032713:intron 25.0%
!! AGGTGAATTTTATGCATATA+AGG + chr5.4:26798532-26798551 MS.gene032713:intron 25.0%
!! TAACTGCTTCTTTTATATGT+TGG + chr5.4:26798781-26798800 MS.gene032713:intron 25.0%
!! TGTATTTGAGTCTATTTTGT+TGG + chr5.4:26798610-26798629 MS.gene032713:intron 25.0%
!!! AGTGTTTTAGTGAGTTTTTA+AGG + chr5.4:26800525-26800544 MS.gene032713:intron 25.0%
!!! ATAAAAAAGGTGTTAGACAA+TGG - chr5.4:26800987-26801006 None:intergenic 25.0%
!!! ATATATTATTGGTGTTGTGT+TGG + chr5.4:26798712-26798731 MS.gene032713:intron 25.0%
!!! ATTTGTTTTCTTACCATTTC+AGG + chr5.4:26800807-26800826 MS.gene032713:intron 25.0%
!!! CCTAATTTTTTGTTTTCTTG+AGG + chr5.4:26798292-26798311 MS.gene032713:intron 25.0%
!!! GTATGATAGAATTTTTGGTT+TGG + chr5.4:26799487-26799506 MS.gene032713:intron 25.0%
!!! GTCTTTTTTATTACTCGTTT+AGG + chr5.4:26801762-26801781 MS.gene032713:intron 25.0%
!!! GTTATGTGCTATTTGTTTAA+AGG + chr5.4:26799381-26799400 MS.gene032713:intron 25.0%
!!! GTTTGATTATTGGTTTTATG+AGG + chr5.4:26798334-26798353 MS.gene032713:intron 25.0%
!!! TAGAATTTTTGGTTTGGAAT+TGG + chr5.4:26799493-26799512 MS.gene032713:intron 25.0%
!!! TCAAAGTGTCTATATTTTGA+CGG + chr5.4:26799788-26799807 MS.gene032713:intron 25.0%
!!! TGTATATAGGGTTTGATTTT+TGG + chr5.4:26798428-26798447 MS.gene032713:intron 25.0%
!!! TTATATGTTGGAGTCTTTTT+TGG + chr5.4:26798793-26798812 MS.gene032713:intron 25.0%
!!! TTTTTGGTTTTGGTATTTCT+TGG + chr5.4:26798444-26798463 MS.gene032713:intron 25.0%
AACACAATGAATGGAGTAAT+TGG - chr5.4:26800351-26800370 None:intergenic 30.0%
AACCAAGATCTGAAAAAATG+AGG - chr5.4:26799358-26799377 None:intergenic 30.0%
AGGTGAATTTGATGCATATA+GGG + chr5.4:26798473-26798492 MS.gene032713:intron 30.0%
CATAAATTTATGCAGATCGT+GGG + chr5.4:26800095-26800114 MS.gene032713:intron 30.0%
CATTGAACTTTACATTGAGA+TGG - chr5.4:26800403-26800422 None:intergenic 30.0%
CTATATCTTTCTCAGTATTC+TGG + chr5.4:26800488-26800507 MS.gene032713:intron 30.0%
CTTAACAACTTCAATATCTG+AGG + chr5.4:26799934-26799953 MS.gene032713:intron 30.0%
CTTACACTTGAGTAATTTGA+CGG - chr5.4:26800210-26800229 None:intergenic 30.0%
GAGATAGAATTACAATTCTC+AGG + chr5.4:26800170-26800189 MS.gene032713:CDS 30.0%
GAGCTGAATTAGATGTATAT+AGG + chr5.4:26798415-26798434 MS.gene032713:intron 30.0%
GATAGAATTACAATTCTCAG+GGG + chr5.4:26800172-26800191 MS.gene032713:CDS 30.0%
GATGAATGCTTGAGAAAATA+TGG + chr5.4:26800842-26800861 MS.gene032713:CDS 30.0%
GGGAAAAAAGATCTTTAACT+TGG - chr5.4:26801184-26801203 None:intergenic 30.0%
TAAGTGACATGTTTGTATTG+AGG + chr5.4:26799862-26799881 MS.gene032713:intron 30.0%
TAATCCATATAACACTGTCA+GGG - chr5.4:26799192-26799211 None:intergenic 30.0%
TACAAGTGAAACATCATATC+TGG + chr5.4:26800615-26800634 MS.gene032713:intron 30.0%
TCTCAATGTAAAGTTCAATG+CGG + chr5.4:26800403-26800422 MS.gene032713:intron 30.0%
TGAATCAATCTAAGTGTTAC+GGG - chr5.4:26801707-26801726 None:intergenic 30.0%
TGCAACACAATTAAGAAACA+GGG + chr5.4:26799582-26799601 MS.gene032713:intron 30.0%
TTAATCCATATAACACTGTC+AGG - chr5.4:26799193-26799212 None:intergenic 30.0%
TTGGTATTTCTTGGTTTATG+AGG + chr5.4:26798453-26798472 MS.gene032713:intron 30.0%
! ATGATCTGATTGAGCTTTTT+CGG + chr5.4:26798187-26798206 MS.gene032713:CDS 30.0%
! CTTGTATGAGAGGATTTTAT+AGG + chr5.4:26799734-26799753 MS.gene032713:intron 30.0%
! GAGGTTTGTGTGTTATTAAA+TGG + chr5.4:26801087-26801106 MS.gene032713:intron 30.0%
! GTTGTCTGCATTTTTCTTTT+TGG + chr5.4:26801312-26801331 MS.gene032713:intron 30.0%
!! CTGTAATATATTTTGAGGGA+AGG + chr5.4:26799903-26799922 MS.gene032713:intron 30.0%
!! TTTTCGGTTTTGGTGATTTT+TGG + chr5.4:26798386-26798405 MS.gene032713:intron 30.0%
!! TTTTCTTACCATTTCAGGTA+TGG + chr5.4:26800812-26800831 MS.gene032713:intron 30.0%
!!! ATCCTCATTTTTTCAGATCT+TGG + chr5.4:26799353-26799372 MS.gene032713:intron 30.0%
!!! ATCTTTTTTCCCTTGAAGTA+TGG + chr5.4:26801192-26801211 MS.gene032713:intron 30.0%
!!! ATGTTTTAAGTTTGTGTGAG+TGG + chr5.4:26799671-26799690 MS.gene032713:intron 30.0%
!!! TAGGGTTTGATTTTTGGTTT+TGG + chr5.4:26798434-26798453 MS.gene032713:intron 30.0%
!!! TAGTGTTTTGTTTTCGGTTT+TGG + chr5.4:26798376-26798395 MS.gene032713:intron 30.0%
!!! TGGAAATTGCTGTTTTTAGT+TGG + chr5.4:26798848-26798867 MS.gene032713:intron 30.0%
AATAACAGATTGGCATTCAC+AGG - chr5.4:26800699-26800718 None:intergenic 35.0%
AATATGGAAATGCCAATGTC+TGG + chr5.4:26800858-26800877 MS.gene032713:CDS 35.0%
AATCATTCCAACAGAAAAGC+AGG - chr5.4:26799452-26799471 None:intergenic 35.0%
ACACAATACGGACAAAGAAA+TGG - chr5.4:26799294-26799313 None:intergenic 35.0%
ACTTTGCATACCATACTTCA+AGG - chr5.4:26801205-26801224 None:intergenic 35.0%
AGAAAGAGTTGTAAAGTGTG+TGG + chr5.4:26800554-26800573 MS.gene032713:intron 35.0%
AGAATGGTTATAGCCAAAGT+TGG - chr5.4:26799989-26800008 None:intergenic 35.0%
ATCCCAAACCAATAACAGAT+TGG - chr5.4:26800709-26800728 None:intergenic 35.0%
ATTCTCTCCAATTTCCAGAA+TGG - chr5.4:26801851-26801870 None:intergenic 35.0%
CTCAATGTAAAGTTCAATGC+GGG + chr5.4:26800404-26800423 MS.gene032713:intron 35.0%
CTCTTTATGGGAGATTATGT+AGG + chr5.4:26798240-26798259 MS.gene032713:CDS 35.0%
CTTTGCATACCATACTTCAA+GGG - chr5.4:26801204-26801223 None:intergenic 35.0%
GAAACATGAAACATCCAAAG+AGG - chr5.4:26801386-26801405 None:intergenic 35.0%
GAAATGGTCAAGATTTAGTC+AGG - chr5.4:26799278-26799297 None:intergenic 35.0%
GAACTTGAAACTTGTATGAG+AGG + chr5.4:26799724-26799743 MS.gene032713:intron 35.0%
GAACTTTACATTGAGATGGA+TGG - chr5.4:26800399-26800418 None:intergenic 35.0%
GAGGTGAATTTGATGCATAT+AGG + chr5.4:26798472-26798491 MS.gene032713:intron 35.0%
GATTGCAAAAAATCAAGCTG+CGG - chr5.4:26800446-26800465 None:intergenic 35.0%
GCATAAATTTATGCAGATCG+TGG + chr5.4:26800094-26800113 MS.gene032713:intron 35.0%
GGTAAAGAATTTCCAGACAT+TGG - chr5.4:26800873-26800892 None:intergenic 35.0%
GTGCAACACAATTAAGAAAC+AGG + chr5.4:26799581-26799600 MS.gene032713:intron 35.0%
TACACAATAGCACATTCACT+CGG - chr5.4:26800654-26800673 None:intergenic 35.0%
TCAATGTAAAGTTCAATGCG+GGG + chr5.4:26800405-26800424 MS.gene032713:intron 35.0%
TCTGGAAATTGGAGAGAATA+TGG + chr5.4:26801852-26801871 MS.gene032713:CDS 35.0%
TGATATGTAGTCAGCTAGTT+TGG + chr5.4:26798972-26798991 MS.gene032713:intron 35.0%
TGTGAATGCCAATCTGTTAT+TGG + chr5.4:26800698-26800717 MS.gene032713:intron 35.0%
TTATCCAGTGTATCCAAAGA+TGG - chr5.4:26801042-26801061 None:intergenic 35.0%
TTCTTAATTGTGTTGCACAC+CGG - chr5.4:26799579-26799598 None:intergenic 35.0%
TTTACCCTGACAGTGTTATA+TGG + chr5.4:26799185-26799204 MS.gene032713:intron 35.0%
! ATGCCAATCTGTTATTGGTT+TGG + chr5.4:26800703-26800722 MS.gene032713:intron 35.0%
! ATGTAATAAGGTGCCAACTT+TGG + chr5.4:26799973-26799992 MS.gene032713:intron 35.0%
! GGTTTGGGATGATATGAAAT+TGG + chr5.4:26800719-26800738 MS.gene032713:intron 35.0%
! TGCATATAGGGTGTGATTTT+TGG + chr5.4:26798485-26798504 MS.gene032713:intron 35.0%
! TGTGTTTTACAACTTTCTGC+TGG + chr5.4:26800371-26800390 MS.gene032713:intron 35.0%
! TTGCAGATTTTCTGTTTGCA+TGG + chr5.4:26801006-26801025 MS.gene032713:intron 35.0%
! TTGTGATGGAAGGATACAAT+TGG + chr5.4:26801667-26801686 MS.gene032713:CDS 35.0%
!! AATGGATAGTGGTTTTACCA+AGG + chr5.4:26800579-26800598 MS.gene032713:intron 35.0%
!! ATGGATAGTGGTTTTACCAA+GGG + chr5.4:26800580-26800599 MS.gene032713:intron 35.0%
!! TATTTTGAGGGAAGGTTATG+AGG + chr5.4:26799911-26799930 MS.gene032713:intron 35.0%
!! TGCCAATCTGTTATTGGTTT+GGG + chr5.4:26800704-26800723 MS.gene032713:intron 35.0%
!! TGGTGATGTTTGCTTTTATG+AGG + chr5.4:26798512-26798531 MS.gene032713:intron 35.0%
!!! GTTGGAGTCTTTTTTGGAAA+GGG + chr5.4:26798799-26798818 MS.gene032713:intron 35.0%
!!! GTTGGTTTTTGATGAGTGTT+TGG + chr5.4:26798628-26798647 MS.gene032713:intron 35.0%
!!! TGTTGGAGTCTTTTTTGGAA+AGG + chr5.4:26798798-26798817 MS.gene032713:intron 35.0%
!!! TTGGTGTTGTGTTGGAATTT+TGG + chr5.4:26798720-26798739 MS.gene032713:intron 35.0%
AATGTAAAGTTCAATGCGGG+GGG + chr5.4:26800407-26800426 MS.gene032713:intron 40.0%
ACGGTTTGTGGTGATATTCA+TGG + chr5.4:26798156-26798175 MS.gene032713:CDS 40.0%
ACTCGTTTAGGAGAAGAATG+TGG + chr5.4:26801774-26801793 MS.gene032713:intron 40.0%
ATATCACCACAAACCGTAAC+CGG - chr5.4:26798153-26798172 None:intergenic 40.0%
ATTCCAACAGAAAAGCAGGA+GGG - chr5.4:26799448-26799467 None:intergenic 40.0%
CAAATTACTGCTACCGATGT+GGG + chr5.4:26801815-26801834 MS.gene032713:CDS 40.0%
CAATGTAAAGTTCAATGCGG+GGG + chr5.4:26800406-26800425 MS.gene032713:intron 40.0%
CCAGTAAGCGAATCAAAGAA+TGG - chr5.4:26800005-26800024 None:intergenic 40.0%
CGTAGAAACCATACCTGAAA+TGG - chr5.4:26800823-26800842 None:intergenic 40.0%
GCTCAGTTCAATCACACAAA+TGG + chr5.4:26801615-26801634 MS.gene032713:CDS 40.0%
GTTGTAAAGTGTGTGGTGAA+TGG + chr5.4:26800561-26800580 MS.gene032713:intron 40.0%
TCAAACCTGACTCTCAATGA+GGG - chr5.4:26800924-26800943 None:intergenic 40.0%
TCAATATAGGTTCCGCATGA+AGG + chr5.4:26801495-26801514 MS.gene032713:intron 40.0%
TTCAAACCTGACTCTCAATG+AGG - chr5.4:26800925-26800944 None:intergenic 40.0%
TTGTGTAGACGTGAATTACG+TGG + chr5.4:26800667-26800686 MS.gene032713:intron 40.0%
! AACCTCTACGACATGGTTTT+AGG - chr5.4:26801437-26801456 None:intergenic 40.0%
! AAGCAAAATTGTCACTTGCC+AGG - chr5.4:26801474-26801493 None:intergenic 40.0%
! AGTGGAGACTGTTTCACTTT+TGG + chr5.4:26800126-26800145 MS.gene032713:CDS 40.0%
! CAGATTTTCTGTTTGCATGG+AGG + chr5.4:26801009-26801028 MS.gene032713:intron 40.0%
! CCATTCTTTGATTCGCTTAC+TGG + chr5.4:26800002-26800021 MS.gene032713:intron 40.0%
!!! AGGGTGTGATTTTTGGTTCT+TGG + chr5.4:26798492-26798511 MS.gene032713:intron 40.0%
!!! ATTGAGCTTTTTCGGATTGG+TGG + chr5.4:26798195-26798214 MS.gene032713:CDS 40.0%
!!! CTGATTGAGCTTTTTCGGAT+TGG + chr5.4:26798192-26798211 MS.gene032713:CDS 40.0%
AGATCGTGGGTACTATTCAG+TGG + chr5.4:26800108-26800127 MS.gene032713:intron 45.0%
AGTGTGTGGTGAATGGATAG+TGG + chr5.4:26800568-26800587 MS.gene032713:intron 45.0%
AGTTACTATCACACCGTAGG+GGG + chr5.4:26799542-26799561 MS.gene032713:intron 45.0%
ATGTAAAGTTCAATGCGGGG+GGG + chr5.4:26800408-26800427 MS.gene032713:intron 45.0%
CAGTATTCTGGGTGATGTTG+TGG + chr5.4:26800500-26800519 MS.gene032713:intron 45.0%
CAGTTACTATCACACCGTAG+GGG + chr5.4:26799541-26799560 MS.gene032713:intron 45.0%
CATTCCAACAGAAAAGCAGG+AGG - chr5.4:26799449-26799468 None:intergenic 45.0%
CCAAATTACTGCTACCGATG+TGG + chr5.4:26801814-26801833 MS.gene032713:CDS 45.0%
CCACATCGGTAGCAGTAATT+TGG - chr5.4:26801817-26801836 None:intergenic 45.0%
CTCACCATCTTTGGATACAC+TGG + chr5.4:26801035-26801054 MS.gene032713:CDS 45.0%
GACCAATGTGTGATCTCTTG+TGG + chr5.4:26801517-26801536 MS.gene032713:CDS 45.0%
GACCACAAGAGATCACACAT+TGG - chr5.4:26801522-26801541 None:intergenic 45.0%
GCAGTTACTATCACACCGTA+GGG + chr5.4:26799540-26799559 MS.gene032713:intron 45.0%
GGTTGACTGGATATATTGCC+TGG + chr5.4:26801453-26801472 MS.gene032713:intron 45.0%
TAGAGCTCATCAGCTTGTGA+TGG + chr5.4:26801653-26801672 MS.gene032713:CDS 45.0%
TCACACATTGGTCCTTCATG+CGG - chr5.4:26801510-26801529 None:intergenic 45.0%
TGACACTACACGAAAGACAC+CGG + chr5.4:26801921-26801940 MS.gene032713:CDS 45.0%
TGAGGAATGGAACGTTCAAC+CGG + chr5.4:26798119-26798138 MS.gene032713:CDS 45.0%
TGCAGTTACTATCACACCGT+AGG + chr5.4:26799539-26799558 MS.gene032713:intron 45.0%
TGCCTAAAACCATGTCGTAG+AGG + chr5.4:26801432-26801451 MS.gene032713:intron 45.0%
TGCTGGATATACGTTTGGAC+AGG + chr5.4:26801584-26801603 MS.gene032713:CDS 45.0%
TGTTTCACTTGTACGCTCCA+TGG - chr5.4:26800608-26800627 None:intergenic 45.0%
TTCCAACAGAAAAGCAGGAG+GGG - chr5.4:26799447-26799466 None:intergenic 45.0%
! ATGGCTGCCATTCTGGAAAT+TGG + chr5.4:26801841-26801860 MS.gene032713:CDS 45.0%
!! GGAGACTGTTTCACTTTTGG+TGG + chr5.4:26800129-26800148 MS.gene032713:CDS 45.0%
AACCTCCTGTATGCGATCCA+AGG - chr5.4:26801073-26801092 None:intergenic 50.0%
AACGTATATCCAGCACCACG+TGG - chr5.4:26801579-26801598 None:intergenic 50.0%
AAGTGTCCGGTTACGGTTTG+TGG + chr5.4:26798144-26798163 MS.gene032713:CDS 50.0%
ACCATGTCGTAGAGGTTGAC+TGG + chr5.4:26801440-26801459 MS.gene032713:intron 50.0%
ACTGGATAATATCCGCGCCT+TGG + chr5.4:26801053-26801072 MS.gene032713:CDS 50.0%
CATGGAGTGCAAGCCTTTAC+CGG + chr5.4:26798050-26798069 MS.gene032713:CDS 50.0%
CCATGTGCTCTATGCCTCTT+TGG + chr5.4:26801369-26801388 MS.gene032713:intron 50.0%
CTGCTACCGATGTGGGAATA+TGG + chr5.4:26801822-26801841 MS.gene032713:CDS 50.0%
GAGGCATAGAGCACATGGTA+AGG - chr5.4:26801367-26801386 None:intergenic 50.0%
GGGCGATTCTTGTTGAGGAA+TGG + chr5.4:26798106-26798125 MS.gene032713:CDS 50.0%
GGTGTCTTTCGTGTAGTGTC+AGG - chr5.4:26801922-26801941 None:intergenic 50.0%
GTGTCAGGCTCAATTTGCCT+TGG - chr5.4:26801907-26801926 None:intergenic 50.0%
TATCACACCGTAGGGGGTTA+GGG + chr5.4:26799548-26799567 MS.gene032713:intron 50.0%
TCCAACAGAAAAGCAGGAGG+GGG - chr5.4:26799446-26799465 None:intergenic 50.0%
TCCAGTCAACCTCTACGACA+TGG - chr5.4:26801444-26801463 None:intergenic 50.0%
TGCAGTTTGATCCAGCTCCA+AGG + chr5.4:26801887-26801906 MS.gene032713:CDS 50.0%
TGGAGGTCTCTCACCATCTT+TGG + chr5.4:26801026-26801045 MS.gene032713:CDS 50.0%
TGGCAGCCATATTCCCACAT+CGG - chr5.4:26801831-26801850 None:intergenic 50.0%
TGGGAATATGGCTGCCATTC+TGG + chr5.4:26801834-26801853 MS.gene032713:CDS 50.0%
! CCAAAGAGGCATAGAGCACA+TGG - chr5.4:26801372-26801391 None:intergenic 50.0%
! CGTGGTGCTGGATATACGTT+TGG + chr5.4:26801579-26801598 MS.gene032713:CDS 50.0%
! GCTCATCAGCTTGTGATGGA+AGG + chr5.4:26801657-26801676 MS.gene032713:CDS 50.0%
! GGAAGGATACAATTGGTGCC+AGG + chr5.4:26801674-26801693 MS.gene032713:CDS 50.0%
!! TCGGATTGGTGGAAATGCTC+CGG + chr5.4:26798206-26798225 MS.gene032713:CDS 50.0%
!!! TGGTTTTACCAAGGGCACCA+TGG + chr5.4:26800588-26800607 MS.gene032713:intron 50.0%
AAGTTCAATGCGGGGGGGTT+CGG + chr5.4:26800413-26800432 MS.gene032713:intron 55.0%
ACCCAGACGATCGTTGTGGT+TGG + chr5.4:26801544-26801563 MS.gene032713:CDS 55.0%
ACCGTAACCGGACACTTCAC+CGG - chr5.4:26798141-26798160 None:intergenic 55.0%
AGCGAGGGCGATTCTTGTTG+AGG + chr5.4:26798101-26798120 MS.gene032713:CDS 55.0%
AGTGTTACGGGTCAGTCACC+TGG - chr5.4:26801695-26801714 None:intergenic 55.0%
CCAGACGATCGTTGTGGTTG+GGG + chr5.4:26801546-26801565 MS.gene032713:CDS 55.0%
CCCAACCACAACGATCGTCT+GGG - chr5.4:26801548-26801567 None:intergenic 55.0%
CCCAGACGATCGTTGTGGTT+GGG + chr5.4:26801545-26801564 MS.gene032713:CDS 55.0%
CTATCACACCGTAGGGGGTT+AGG + chr5.4:26799547-26799566 MS.gene032713:intron 55.0%
CTCTCAATGAGGGCAGTCAG+AGG - chr5.4:26800914-26800933 None:intergenic 55.0%
GACTGCCCTCATTGAGAGTC+AGG + chr5.4:26800916-26800935 MS.gene032713:CDS 55.0%
GGCTCAATTTGCCTTGGAGC+TGG - chr5.4:26801901-26801920 None:intergenic 55.0%
GGTATATCTCCACGTGGTGC+TGG + chr5.4:26801567-26801586 MS.gene032713:CDS 55.0%
GGTTGGGGTATATCTCCACG+TGG + chr5.4:26801561-26801580 MS.gene032713:CDS 55.0%
TCGGCAGATCGAGAGTCTCA+TGG + chr5.4:26798032-26798051 MS.gene032713:CDS 55.0%
TCTGACCCAGACGATCGTTG+TGG + chr5.4:26801540-26801559 MS.gene032713:CDS 55.0%
TTCACATCCGCCTCCGGTAA+AGG - chr5.4:26798066-26798085 None:intergenic 55.0%
TTTACCGGAGGCGGATGTGA+AGG + chr5.4:26798065-26798084 MS.gene032713:CDS 55.0%
! ACCGGTGAAGTGTCCGGTTA+CGG + chr5.4:26798137-26798156 MS.gene032713:CDS 55.0%
! CGTTCAACCGGTGAAGTGTC+CGG + chr5.4:26798131-26798150 MS.gene032713:CDS 55.0%
AGGCGCTATGCGATCAAGCG+AGG + chr5.4:26798085-26798104 MS.gene032713:CDS 60.0%
CCCCAACCACAACGATCGTC+TGG - chr5.4:26801549-26801568 None:intergenic 60.0%
CCTGTATGCGATCCAAGGCG+CGG - chr5.4:26801068-26801087 None:intergenic 60.0%
CGATCCAGATCCGCGTGTGA+CGG - chr5.4:26798015-26798034 None:intergenic 60.0%
CGCCTTGGATCGCATACAGG+AGG + chr5.4:26801068-26801087 MS.gene032713:CDS 60.0%
CGTCACACGCGGATCTGGAT+CGG + chr5.4:26798013-26798032 MS.gene032713:CDS 60.0%
GGAGTGCAAGCCTTTACCGG+AGG + chr5.4:26798053-26798072 MS.gene032713:CDS 60.0%
GGCGCTATGCGATCAAGCGA+GGG + chr5.4:26798086-26798105 MS.gene032713:CDS 60.0%
GTGCAAGCCTTTACCGGAGG+CGG + chr5.4:26798056-26798075 MS.gene032713:CDS 60.0%
TGTACGCTCCATGGTGCCCT+TGG - chr5.4:26800599-26800618 None:intergenic 60.0%
!! GCCCCCTCCTGCTTTTCTGT+TGG + chr5.4:26799442-26799461 MS.gene032713:intron 60.0%
AGCGCCTTCACATCCGCCTC+CGG - chr5.4:26798072-26798091 None:intergenic 65.0%
CACACCGTAGGGGGTTAGGG+TGG + chr5.4:26799551-26799570 MS.gene032713:intron 65.0%
CCGCGCCTTGGATCGCATAC+AGG + chr5.4:26801065-26801084 MS.gene032713:CDS 65.0%
GGCACCACCCTAACCCCCTA+CGG - chr5.4:26799558-26799577 None:intergenic 65.0%
GTAGGGGGTTAGGGTGGTGC+CGG + chr5.4:26799557-26799576 MS.gene032713:intron 65.0%
! CAATGCGGGGGGGTTCGGTT+AGG + chr5.4:26800418-26800437 MS.gene032713:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 26798009 26801957 26798009 ID=MS.gene032713
chr5.4 mRNA 26798009 26801957 26798009 ID=MS.gene032713.t1;Parent=MS.gene032713
chr5.4 exon 26798009 26798261 26798009 ID=MS.gene032713.t1.exon1;Parent=MS.gene032713.t1
chr5.4 CDS 26798009 26798261 26798009 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
chr5.4 exon 26800110 26800224 26800110 ID=MS.gene032713.t1.exon2;Parent=MS.gene032713.t1
chr5.4 CDS 26800110 26800224 26800110 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
chr5.4 exon 26800829 26800937 26800829 ID=MS.gene032713.t1.exon3;Parent=MS.gene032713.t1
chr5.4 CDS 26800829 26800937 26800829 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
chr5.4 exon 26801012 26801089 26801012 ID=MS.gene032713.t1.exon4;Parent=MS.gene032713.t1
chr5.4 CDS 26801012 26801089 26801012 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
chr5.4 exon 26801504 26801695 26801504 ID=MS.gene032713.t1.exon5;Parent=MS.gene032713.t1
chr5.4 CDS 26801504 26801695 26801504 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
chr5.4 exon 26801784 26801957 26801784 ID=MS.gene032713.t1.exon6;Parent=MS.gene032713.t1
chr5.4 CDS 26801784 26801957 26801784 ID=cds.MS.gene032713.t1;Parent=MS.gene032713.t1
Gene Sequence

>MS.gene032713

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTCATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGGGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGGTTAGTTTCTTGAATTCGATTCTTAAAATTCCTAATTTTTTGTTTTCTTGAGGTTAATTTGATTTATTTAGGGTTTGATTATTGGTTTTATGAGGTTAATTTGATTTATATATATAGTGTTTTGTTTTCGGTTTTGGTGATTTTTGGTTTTATGAGCTGAATTAGATGTATATAGGGTTTGATTTTTGGTTTTGGTATTTCTTGGTTTATGAGGTGAATTTGATGCATATAGGGTGTGATTTTTGGTTCTTGGTGATGTTTGCTTTTATGAGGTGAATTTTATGCATATAAGGTTTGATTTTTTATTTTGGTAATTTTTGTTCTTGAGATGAATTATTGGTTTTGTGTTGTATTTGAGTCTATTTTGTTGGTTTTTGATGAGTGTTTGGTTGTTATATTTGAAGATAGTTATTTCAGTTTTTTAAGGTGAATTGATGTATATTGAGTTTGATATATTATTGGTGTTGTGTTGGAATTTTGGTAGTTTTTTTTGTTTTATAGTTTAATTTGATATTGTAATAACTGCTTCTTTTATATGTTGGAGTCTTTTTTGGAAAGGGTTTTGTTTATGATGTTTTCTGAAAAATGGAAATTGCTGTTTTTAGTTGGTTGTATTTGTTTGACTAATTGGTGAGTGATTGTGTAAAATTGTCATGTTTGTTGTGTAACTGTTGAAGCAACATGATTTAGATGCTTCTTTCGCTGTTTATTGATATGTAGTCAGCTAGTTTGGATCAATATCAAAGCAATGTCGAGATCATGTGATTAGTCAAATTTTGTAGTTTAATTTTGATACGGTGTAGAAAGTTTTGCACTTTCAACAAATCACAACCAATCATATGTTTGATTTTAGAAGTAGTTTTGATCAAAGTCAAACATTTCAAATGATCAGTCGATTACGATCGATTGACAGTGTAAAAATCTTTACCCTGACAGTGTTATATGGATTAAGTACTAACTTTTTTTTTTTATAAATGTTACGCTAGTTTGTTTTATGCATGTTTTATTAGTTGCCTGACTAAATCTTGACCATTTCTTTGTCCGTATTGTGTTATAATTTATAGCTTCATGTCACTGTTGAAATGTATAATATCCTCATTTTTTCAGATCTTGGTTTTAGTTATGTGCTATTTGTTTAAAGGAGAATTGTTTGATAAAACTTGTCTTTTTATTTTTCTTGGCCCCCTCCTGCTTTTCTGTTGGAATGATTGTTAATGTTATTCATGTATGATAGAATTTTTGGTTTGGAATTGGATATACATATCATTTTATGGGAGTGCAGTTACTATCACACCGTAGGGGGTTAGGGTGGTGCCGGTGTGCAACACAATTAAGAAACAGGGAGATATAAGTTTGAGCTCAAAAAATTGGATAAATGTAAAATAGTCTTGCTAGTTGTGAATTTCTTAATGTTTTAAGTTTGTGTGAGTGGCAAGTGATGACAAAAGAGAGATTGTTCAATGAACTTGAAACTTGTATGAGAGGATTTTATAGGATAAATGTCAGTGCTAAGTGAAGTTCTATTGTCAAAGTGTCTATATTTTGACGGAATTTGCTGATAGCATAAAAATGACATAAGTGTGATAGCATAAAAATGACATAAGTGACATGTTTGTATTGAGGTATCAAAATTGAGTGTTACTGTAATATATTTTGAGGGAAGGTTATGAGGCTTAACAACTTCAATATCTGAGGATGTTACTAGATTCAGATGTAATAAGGTGCCAACTTTGGCTATAACCATTCTTTGATTCGCTTACTGGATTTAATTATTATGTTCAAATTAGATTATTTGCATCTGTGGGAACCACTACAATTTCCTAATAATTCTGGCATAAATTTATGCAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTAAGAACACTTTCTTCTCAAATTACTCATTGCTATTTGCGTATGTAAATATTATCATGTTTAAGCTGAAGTTTCATTATAATTCTTGCTTAAAGTTTAAGAATAGGTTAATGATGAGCATCTCCAATTACTCCATTCATTGTGTTTGTGTTTTACAACTTTCTGCTGGCTCCATCCATCTCAATGTAAAGTTCAATGCGGGGGGGTTCGGTTAGGAGCCGCAGCTTGATTTTTTGCAATCATATTATGATATTCTTATTTTTCTATATCTTTCTCAGTATTCTGGGTGATGTTGTGGATAGTGTTTTAGTGAGTTTTTAAGGCTTTAGAGAAAGAGTTGTAAAGTGTGTGGTGAATGGATAGTGGTTTTACCAAGGGCACCATGGAGCGTACAAGTGAAACATCATATCTGGCTTGTGTGCGTATCCGAGTGAATGTGCTATTGTGTAGACGTGAATTACGTGGTTCATGCCTGTGAATGCCAATCTGTTATTGGTTTGGGATGATATGAAATTGGAAAAGAGAAAAATGTAATCTTTGAATATAAGAAACATAAAAGGAATTTTATTTTGGAAGTTGTTAATTTGTTTTCTTACCATTTCAGGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGGTTTGAACTTCAATATGTTTCAAAATGTTTCTCTGATTTCTTTATGCCATTGTCTAACACCTTTTTTATTGCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTTGTGTGTTATTAAATGGCTATTATAACTGGCAATATCTTACCAATGTAAATTATTTGATACTAAGAACATTTTTATGGAAAGCATGTTCCAAGTTAAAGATCTTTTTTCCCTTGAAGTATGGTATGCAAAGTAATATATTTTATTTGATATTTCAACTTGCAATTCTTCGTTGTAGTTTGTAATTGCTTTCATGTTTCATTTTGTCGATAGTTTAGAAAGTTGTCTGCATTTTTCTTTTTGGTTGAATCAACTATTAATTATTTGCTTCAGCCTTACCATGTGCTCTATGCCTCTTTGGATGTTTCATGTTTCCCTCATTTAATATTTCATTTCTGTATTGCCTAAAACCATGTCGTAGAGGTTGACTGGATATATTGCCTGGCAAGTGACAATTTTGCTTTTCAATATAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGTGACTGACCCGTAACACTTAGATTGATTCATTTCAAGGATACTTATTACGCTCTATGTATTGACTGTCTTTTTTATTACTCGTTTAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA
Protein sequence

>MS.gene032713.t1

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL