AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50106

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50106.t1 MTR_5g081230 98.418 316 4 1 1 315 1 316 0.0 647
MS.gene50106.t1 MTR_1g079950 86.435 317 39 2 16 329 1 316 0.0 574
MS.gene50106.t1 MTR_1g079950 86.435 317 39 2 16 329 30 345 0.0 574
MS.gene50106.t1 MTR_1g079950 86.435 317 39 2 16 329 1 316 0.0 573
MS.gene50106.t1 MTR_1g079950 86.435 317 39 2 16 329 1 316 0.0 572
MS.gene50106.t1 MTR_7g116380 85.174 317 43 2 16 329 1 316 0.0 565
MS.gene50106.t1 MTR_7g116380 85.174 317 43 2 16 329 1 316 0.0 565
MS.gene50106.t1 MTR_1g043240 85.085 295 43 1 20 314 5 298 0.0 535
MS.gene50106.t1 MTR_1g074880 80.936 299 56 1 16 314 1 298 0.0 523
MS.gene50106.t1 MTR_1g074880 80.936 299 56 1 16 314 1 298 0.0 523
MS.gene50106.t1 MTR_8g098980 78.930 299 63 0 16 314 1 299 0.0 521
MS.gene50106.t1 MTR_8g005010 78.621 290 61 1 21 310 4 292 2.73e-175 491
MS.gene50106.t1 MTR_7g112870 75.163 306 73 1 16 321 5 307 3.84e-171 482
MS.gene50106.t1 MTR_1g079950 87.549 257 29 1 76 329 34 290 2.60e-170 479
MS.gene50106.t1 MTR_1g074880 83.333 240 40 0 75 314 4 243 1.05e-155 441
MS.gene50106.t1 MTR_1g074880 83.333 240 40 0 75 314 4 243 1.23e-155 441
MS.gene50106.t1 MTR_8g062430 45.333 300 157 3 23 321 6 299 4.77e-94 285
MS.gene50106.t1 MTR_5g093990 43.934 305 165 2 21 324 1 300 5.32e-94 285
MS.gene50106.t1 MTR_5g037200 45.667 300 156 3 23 321 6 299 2.79e-93 283
MS.gene50106.t1 MTR_7g107310 44.079 304 167 3 19 321 5 306 6.22e-93 283
MS.gene50106.t1 MTR_8g085610 46.350 274 145 2 42 314 22 294 2.38e-90 276
MS.gene50106.t1 MTR_1g039380 43.972 282 153 4 41 320 15 293 1.13e-88 271
MS.gene50106.t1 MTR_8g085610 45.556 270 145 2 46 314 2 270 3.65e-88 270
MS.gene50106.t1 MTR_1g039380 44.403 268 144 4 55 320 5 269 1.50e-85 263
MS.gene50106.t1 MTR_2g087530 46.006 313 153 6 14 310 521 833 1.42e-82 271
MS.gene50106.t1 MTR_2g087530 46.006 313 153 6 14 310 634 946 2.74e-82 272
MS.gene50106.t1 MTR_4g050540 45.687 313 154 6 14 310 639 951 9.77e-81 268
MS.gene50106.t1 MTR_1g089370 48.239 284 131 6 42 310 548 830 1.05e-80 266
MS.gene50106.t1 MTR_3g452710 40.476 294 164 5 8 295 158 446 8.53e-70 228
MS.gene50106.t1 MTR_3g452710 40.476 294 164 5 8 295 225 513 2.66e-69 229
MS.gene50106.t1 MTR_2g100130 37.662 308 173 7 2 295 63 365 4.38e-66 216
MS.gene50106.t1 MTR_2g100130 37.662 308 173 7 2 295 133 435 4.16e-65 216
MS.gene50106.t1 MTR_2g100130 37.662 308 173 7 2 295 162 464 9.68e-65 216
MS.gene50106.t1 MTR_2g100130 37.662 308 173 7 2 295 172 474 1.38e-64 216
MS.gene50106.t1 MTR_2g100130 37.662 308 173 7 2 295 172 474 1.61e-64 215
MS.gene50106.t1 MTR_2g100130 37.662 308 172 8 2 295 133 434 1.19e-63 212
MS.gene50106.t1 MTR_2g100130 37.662 308 172 8 2 295 172 473 2.84e-63 212
MS.gene50106.t1 MTR_2g100130 37.919 298 166 7 2 285 172 464 6.39e-63 211
MS.gene50106.t1 MTR_2g100160 43.548 248 132 5 55 295 138 384 3.38e-59 199
MS.gene50106.t1 MTR_5g037200 50.920 163 79 1 42 203 20 182 3.87e-56 184
MS.gene50106.t1 MTR_8g072600 33.835 266 126 7 69 284 129 394 4.40e-34 132
MS.gene50106.t1 MTR_8g072600 33.945 218 109 5 69 251 129 346 1.47e-27 112
MS.gene50106.t1 MTR_2g099710 28.938 273 148 11 47 284 211 472 1.54e-19 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50106.t1 AT2G39840 92.000 300 24 0 16 315 14 313 0.0 592
MS.gene50106.t1 AT5G59160 83.175 315 45 2 1 314 1 308 0.0 552
MS.gene50106.t1 AT5G59160 83.175 315 45 2 1 314 1 308 0.0 552
MS.gene50106.t1 AT5G59160 83.175 315 45 2 1 314 1 308 0.0 552
MS.gene50106.t1 AT2G29400 81.789 313 53 3 6 315 4 315 0.0 541
MS.gene50106.t1 AT3G46820 79.114 316 58 2 1 315 1 309 0.0 534
MS.gene50106.t1 AT1G64040 79.734 301 61 0 16 316 1 301 0.0 521
MS.gene50106.t1 AT4G11240 73.089 327 83 1 16 342 1 322 0.0 513
MS.gene50106.t1 AT5G43380 76.752 314 71 2 16 328 1 313 1.30e-178 501
MS.gene50106.t1 AT5G43380 76.752 314 71 2 16 328 1 313 2.89e-178 500
MS.gene50106.t1 AT5G43380 76.752 314 71 2 16 328 1 313 4.36e-178 499
MS.gene50106.t1 AT5G27840 73.333 315 81 1 15 329 8 319 4.52e-174 489
MS.gene50106.t1 AT5G27840 73.333 315 81 1 15 329 8 319 4.52e-174 489
MS.gene50106.t1 AT5G27840 74.919 307 74 1 15 321 8 311 4.89e-174 489
MS.gene50106.t1 AT5G27840 74.919 307 74 1 15 321 8 311 7.07e-174 489
MS.gene50106.t1 AT3G05580 74.267 307 76 1 15 321 8 311 3.28e-169 477
MS.gene50106.t1 AT3G05580 75.806 248 57 1 15 262 8 252 4.94e-136 390
MS.gene50106.t1 AT5G55260 46.479 284 151 1 42 324 17 300 1.25e-95 289
MS.gene50106.t1 AT4G26720 43.289 298 163 2 21 317 1 293 8.27e-95 287
MS.gene50106.t1 AT1G10430 45.333 300 157 3 23 321 6 299 1.08e-94 287
MS.gene50106.t1 AT1G10430 45.333 300 157 3 23 321 6 299 1.08e-94 287
MS.gene50106.t1 AT1G69960 46.975 281 147 2 42 321 21 300 3.65e-94 286
MS.gene50106.t1 AT2G42500 45.051 293 154 3 23 314 13 299 8.59e-94 285
MS.gene50106.t1 AT3G58500 44.369 293 156 3 23 314 13 299 5.21e-92 280
MS.gene50106.t1 AT1G59830 44.333 300 160 3 23 321 6 299 5.75e-92 280
MS.gene50106.t1 AT3G19980 43.972 282 153 4 41 320 15 293 4.74e-88 270
MS.gene50106.t1 AT1G50370 43.617 282 154 4 41 320 15 293 5.52e-88 270
MS.gene50106.t1 AT5G55260 40.615 325 151 2 42 324 17 341 4.62e-87 269
MS.gene50106.t1 AT4G03080 48.592 284 130 6 42 310 550 832 1.66e-82 271
MS.gene50106.t1 AT2G27210 45.048 313 156 6 14 310 640 952 1.50e-79 265
MS.gene50106.t1 AT2G27210 45.048 313 156 6 14 310 645 957 1.81e-79 265
MS.gene50106.t1 AT1G08420 45.048 313 156 6 14 310 651 963 5.78e-79 263
MS.gene50106.t1 AT1G08420 45.048 313 156 6 14 310 656 968 5.79e-79 263
MS.gene50106.t1 AT1G59830 46.774 248 125 3 23 269 6 247 6.14e-79 245
MS.gene50106.t1 AT1G03445 48.239 284 130 8 42 310 476 757 1.19e-78 259
MS.gene50106.t1 AT1G03445 48.239 284 130 8 42 310 476 757 1.61e-78 259
MS.gene50106.t1 AT2G42500 48.869 221 111 2 95 314 33 252 2.05e-73 231
MS.gene50106.t1 AT2G42810 41.156 294 162 5 8 295 160 448 1.61e-68 225
MS.gene50106.t1 AT2G42810 41.156 294 162 5 8 295 160 448 1.61e-68 225
MS.gene50106.t1 AT2G42810 41.156 294 162 5 8 295 160 448 1.61e-68 225
MS.gene50106.t1 AT2G42810 41.156 294 162 5 8 295 213 501 4.36e-68 225
MS.gene50106.t1 AT2G42810 41.156 294 162 5 8 295 214 502 4.51e-68 225
MS.gene50106.t1 AT2G42500 41.860 172 89 5 23 190 13 177 7.01e-42 146
MS.gene50106.t1 AT2G42500 41.566 166 88 4 23 184 13 173 7.21e-42 146
MS.gene50106.t1 AT2G42500 43.038 158 81 4 23 176 13 165 2.62e-41 144
MS.gene50106.t1 AT5G63870 32.830 265 126 9 71 284 79 342 2.98e-31 124
MS.gene50106.t1 AT5G63870 32.830 265 126 9 71 284 79 342 2.98e-31 124
MS.gene50106.t1 AT1G48120 29.195 298 151 8 47 284 628 925 1.42e-25 110
MS.gene50106.t1 AT5G63870 33.032 221 111 7 71 255 79 298 2.04e-25 105
MS.gene50106.t1 AT5G10900 30.189 265 137 9 71 293 225 483 1.53e-19 91.7
MS.gene50106.t1 AT5G10900 30.189 265 137 9 71 293 225 483 1.94e-19 91.3
MS.gene50106.t1 AT5G10900 32.143 224 126 7 71 274 225 442 2.34e-19 90.9

Find 114 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCTGACCTCACAAATT+TGG 0.198743 5.4:+63781544 MS.gene50106:CDS
CGGCCGCGCCGCGCCGCGTT+TGG 0.206223 5.4:-63782176 None:intergenic
GCTTCAAGTTCAAGCAAATT+AGG 0.250559 5.4:-63779669 None:intergenic
GATAACTGAACTTGCTTTCC+AGG 0.253465 5.4:-63779591 None:intergenic
CTCTTCCTCTTCCTCGGATC+TGG 0.254528 5.4:-63782466 None:intergenic
GACACAAAACGACTGTATTT+TGG 0.264852 5.4:+63782342 MS.gene50106:CDS
AAAGCCATATATCCTATTAA+TGG 0.271939 5.4:-63781402 None:intergenic
TTGTTAAGGCTCTTTGAGTA+TGG 0.289359 5.4:+63781230 MS.gene50106:CDS
GACGAGGCAGATTCCGGATT+TGG 0.290635 5.4:-63781568 None:intergenic
AATATACCACAAATCTTAAT+AGG 0.294724 5.4:-63779693 None:intergenic
TCTCTGCAGGCTTAAGAATC+TGG 0.306156 5.4:-63782016 None:intergenic
AGAGAAACAAGGGGAGGAAG+AGG 0.307325 5.4:+63782429 MS.gene50106:CDS
ACGAGTGTGCTTCCATTAAT+AGG 0.310559 5.4:+63781390 MS.gene50106:CDS
GCTTCCATTAATAGGATATA+TGG 0.311963 5.4:+63781398 MS.gene50106:CDS
AAGAGGAAGAGGAAAGATAA+TGG 0.327102 5.4:+63782478 MS.gene50106:CDS
TCAAATTCACCACAGTAGTT+TGG 0.333938 5.4:-63781945 None:intergenic
AGAGGAGTGTCCTACACTTT+TGG 0.354737 5.4:+63781677 MS.gene50106:CDS
GTTTGCTCTGTGATCTGCTT+TGG 0.359915 5.4:+63781612 MS.gene50106:CDS
CCTTATTTGTCGTGCTCATC+AGG 0.365242 5.4:+63781742 MS.gene50106:CDS
TGGTCCAAATTTGTGAGGTC+AGG 0.377025 5.4:-63781548 None:intergenic
GCTTTCCAGGTCGAGATAAT+CGG 0.389712 5.4:-63779578 None:intergenic
GAACTGGACGAGGCAGATTC+CGG 0.393173 5.4:-63781574 None:intergenic
ATAAGCAAGCAAAAGACATA+TGG 0.396629 5.4:-63781324 None:intergenic
ACCTGAGCTGGTTGCGGTTG+TGG 0.398008 5.4:-63779507 None:intergenic
TGGTAAAGATGTGAAGGGTT+GGG 0.416189 5.4:+63781643 MS.gene50106:CDS
GAAGGTTTAACGTGAGGCTT+TGG 0.417843 5.4:+63781441 MS.gene50106:CDS
TTCCGGCGAGTTTCCGGAGT+TGG 0.419708 5.4:+63782379 MS.gene50106:CDS
TCTTTCCTCTTCCTCTTCCT+CGG 0.432579 5.4:-63782472 None:intergenic
GAAGCTCCTATTAAGATTTG+TGG 0.437377 5.4:+63779687 MS.gene50106:CDS
GGCAGTACAGTGATTTGTTA+AGG 0.439229 5.4:+63781216 MS.gene50106:CDS
TGTTAAGGCTCTTTGAGTAT+GGG 0.442492 5.4:+63781231 MS.gene50106:CDS
TCACAAATTTGGACCAAATC+CGG 0.443187 5.4:+63781555 MS.gene50106:CDS
CCTGATGAGCACGACAAATA+AGG 0.445699 5.4:-63781742 None:intergenic
GGAGCGGAGCGGTCGGGTTG+CGG 0.450398 5.4:+63782284 MS.gene50106:CDS
TTTCTACAGGTTGTAGAGGA+TGG 0.456508 5.4:+63781876 MS.gene50106:intron
GAGAAACAAGGGGAGGAAGA+GGG 0.463065 5.4:+63782430 MS.gene50106:CDS
AGCAAACCAGTGTCGGGAAT+AGG 0.469815 5.4:-63781596 None:intergenic
GTTAAGGCTCTTTGAGTATG+GGG 0.473187 5.4:+63781232 MS.gene50106:CDS
CCAGTGTCGGGAATAGGAAC+TGG 0.483717 5.4:-63781590 None:intergenic
GGTAAAGATGTGAAGGGTTG+GGG 0.485097 5.4:+63781644 MS.gene50106:CDS
ATCGGACCTCCGTGAGTCGC+CGG 0.486009 5.4:-63779560 None:intergenic
CGGTGTTGGATGACATTATC+CGG 0.486367 5.4:+63779541 MS.gene50106:CDS
CAACCCTTCACATCTTTACC+AGG 0.486888 5.4:-63781641 None:intergenic
GATCTGCTTTGGTCTGATCC+TGG 0.488507 5.4:+63781623 MS.gene50106:CDS
CTGGTAAAGATGTGAAGGGT+TGG 0.489081 5.4:+63781642 MS.gene50106:CDS
ACTCGTGATTTCCCCTCAAA+AGG 0.490784 5.4:-63781373 None:intergenic
CAGATCCGAGGAAGAGGAAG+AGG 0.492314 5.4:+63782467 MS.gene50106:CDS
CGGTCGCGCTCTGACGCGCT+AGG 0.494522 5.4:-63782206 None:intergenic
ACCACAACCGCAACCAGCTC+AGG 0.495833 5.4:+63779506 MS.gene50106:CDS
TCACAGAGCAAACCAGTGTC+GGG 0.498739 5.4:-63781602 None:intergenic
GTTTCGCGGCCGCAATATTG+TGG 0.500818 5.4:+63782263 MS.gene50106:CDS
CGCGACCGAGTCGCGCGGTA+GGG 0.503124 5.4:+63782221 MS.gene50106:CDS
TCAATCACCTGAGCTGGTTG+CGG 0.503443 5.4:-63779513 None:intergenic
CGGATCAAAAGCGGGTTTCG+CGG 0.505761 5.4:+63782249 MS.gene50106:CDS
GGTTGGGGCATGAATGATAG+AGG 0.507092 5.4:+63781659 MS.gene50106:CDS
TATTGTGGAGCGGAGCGGTC+GGG 0.508082 5.4:+63782278 MS.gene50106:CDS
TGAATCCAGATCCGAGGAAG+AGG 0.509984 5.4:+63782461 MS.gene50106:CDS
TTCTACAGGTTGTAGAGGAT+GGG 0.512314 5.4:+63781877 MS.gene50106:intron
GGTGATTGATGAGGCGGTGT+TGG 0.514805 5.4:+63779527 MS.gene50106:CDS
CGGCCAAACGCGGCGCGGCG+CGG 0.515545 5.4:+63782173 MS.gene50106:CDS
GCCTCATCAATCACCTGAGC+TGG 0.516629 5.4:-63779519 None:intergenic
GGTCCAAATTTGTGAGGTCA+GGG 0.517305 5.4:-63781547 None:intergenic
CGGCGAGTTTCCGGAGTTGG+AGG 0.522487 5.4:+63782382 MS.gene50106:CDS
GGTATGAATTCTTTGCAGAC+AGG 0.527480 5.4:+63781898 MS.gene50106:CDS
TGTGGTGAATTTGACAATGC+TGG 0.536157 5.4:+63781954 MS.gene50106:CDS
GCAGTTAAAAGATTCTGTAA+AGG 0.537513 5.4:-63781468 None:intergenic
ATCACAGAGCAAACCAGTGT+CGG 0.537927 5.4:-63781603 None:intergenic
CTCTCTCCCCTAAAGCTCGC+CGG 0.539522 5.4:-63782410 None:intergenic
CTCCAACTCCGGAAACTCGC+CGG 0.540602 5.4:-63782381 None:intergenic
ATATTGTGGAGCGGAGCGGT+CGG 0.542437 5.4:+63782277 MS.gene50106:CDS
CCAGTTCCTATTCCCGACAC+TGG 0.551030 5.4:+63781590 MS.gene50106:CDS
TTAAGGCTCTTTGAGTATGG+GGG 0.557869 5.4:+63781233 MS.gene50106:CDS
GCGCGACCGAGTCGCGCGGT+AGG 0.563091 5.4:+63782220 MS.gene50106:CDS
TGATCCTGGTAAAGATGTGA+AGG 0.568216 5.4:+63781637 MS.gene50106:CDS
GGGAAAAGCGGATCAAAAGC+GGG 0.580807 5.4:+63782241 MS.gene50106:CDS
TAGGGGACTATGTCGATCGT+GGG 0.581599 5.4:+63781285 MS.gene50106:CDS
TTAGGGGACTATGTCGATCG+TGG 0.584691 5.4:+63781284 MS.gene50106:CDS
CTTTAGGGGAGAGAGAAACA+AGG 0.591003 5.4:+63782418 MS.gene50106:CDS
AGCTCAGGTGATTGATGAGG+CGG 0.591360 5.4:+63779521 MS.gene50106:CDS
CGGTCGGGTTGCGGTAAAAG+CGG 0.604776 5.4:+63782293 MS.gene50106:CDS
AAAATTCAGCCACCTTATCA+GGG 0.604962 5.4:-63781700 None:intergenic
AAGAGATAATTGGACTGAGG+AGG 0.607770 5.4:-63781260 None:intergenic
AATCTTTCTACAGGTTGTAG+AGG 0.609590 5.4:+63781872 MS.gene50106:intron
CGCAATATTGTGGAGCGGAG+CGG 0.611194 5.4:+63782273 MS.gene50106:CDS
CTTATCAGGGCCAAAAGTGT+AGG 0.611607 5.4:-63781687 None:intergenic
TCATCTATAAGAGCTGCCAC+AGG 0.614413 5.4:-63781494 None:intergenic
GAGAAAATATTGTGCATGCA+TGG 0.617309 5.4:+63781515 MS.gene50106:CDS
GTCCAAATTTGTGAGGTCAG+GGG 0.618457 5.4:-63781546 None:intergenic
AATAGCGGCCAAACGCGGCG+CGG 0.621554 5.4:+63782168 MS.gene50106:intron
GGATTTGGTCCAAATTTGTG+AGG 0.622555 5.4:-63781553 None:intergenic
AGTCGCGCGGTAGGGAAAAG+CGG 0.623948 5.4:+63782229 MS.gene50106:CDS
TCGGGAATAGGAACTGGACG+AGG 0.628912 5.4:-63781584 None:intergenic
TGAGCTGGTTGCGGTTGTGG+TGG 0.632704 5.4:-63779504 None:intergenic
AGGGAAAAGCGGATCAAAAG+CGG 0.633628 5.4:+63782240 MS.gene50106:CDS
CAGAGCGCGACCGAGTCGCG+CGG 0.633800 5.4:+63782216 MS.gene50106:CDS
CGCTCCGCTCCACAATATTG+CGG 0.634482 5.4:-63782272 None:intergenic
TTTATGATGAATGTAAGCGA+AGG 0.637254 5.4:+63781423 MS.gene50106:CDS
GCGGCCGCAATATTGTGGAG+CGG 0.637416 5.4:+63782268 MS.gene50106:CDS
TGACATTATCCGGCGACTCA+CGG 0.637466 5.4:+63779551 MS.gene50106:CDS
CTATAAGAGCTGCCACAGGA+AGG 0.639489 5.4:-63781490 None:intergenic
GGGGAGAGAGAAACAAGGGG+AGG 0.640038 5.4:+63782423 MS.gene50106:CDS
TTTAGGGGAGAGAGAAACAA+GGG 0.643335 5.4:+63782419 MS.gene50106:CDS
GAGGTCCGATTATCTCGACC+TGG 0.644071 5.4:+63779573 MS.gene50106:CDS
TGCAGGCTTAAGAATCTGGA+AGG 0.647935 5.4:-63782012 None:intergenic
TTGTCAATAGCGGCCAAACG+CGG 0.650608 5.4:+63782163 MS.gene50106:intron
GTAAGCGAAGGTTTAACGTG+AGG 0.650857 5.4:+63781435 MS.gene50106:CDS
TCAGAATCAATGAGTGCACA+AGG 0.654048 5.4:+63779477 None:intergenic
ACCAGCTCAGGTGATTGATG+AGG 0.656427 5.4:+63779518 MS.gene50106:CDS
GAGAACTGAATCCAGATCCG+AGG 0.658052 5.4:+63782455 MS.gene50106:CDS
TGCTGGTGCAATGATGAGTG+TGG 0.682861 5.4:+63781971 MS.gene50106:CDS
GATCCTGGTAAAGATGTGAA+GGG 0.727062 5.4:+63781638 MS.gene50106:CDS
AAAATATTGTGCATGCATGG+TGG 0.745802 5.4:+63781518 MS.gene50106:CDS
TTAGGGGAGAGAGAAACAAG+GGG 0.760972 5.4:+63782420 MS.gene50106:CDS
CATTATCCGGCGACTCACGG+AGG 0.795356 5.4:+63779554 MS.gene50106:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAAAAAGTATCAAAT+TGG - chr5.4:63780152-63780171 None:intergenic 10.0%
!!! AATATAAAAAGTATCAAATT+GGG - chr5.4:63780151-63780170 None:intergenic 10.0%
!!! ATTTGATACTTTTTATATTT+AGG + chr5.4:63780152-63780171 MS.gene50106:intron 10.0%
!!! TGGTTTAAAATATATTTTTA+CGG + chr5.4:63780298-63780317 MS.gene50106:intron 10.0%
!!! TTTGATACTTTTTATATTTA+GGG + chr5.4:63780153-63780172 MS.gene50106:intron 10.0%
!!! TTTTAAATATTCATGTTTTT+GGG + chr5.4:63780077-63780096 MS.gene50106:intron 10.0%
!!! TTTTTAAATATTCATGTTTT+TGG + chr5.4:63780076-63780095 MS.gene50106:intron 10.0%
!! AAAATAAAAGCTAAGAAAAA+AGG - chr5.4:63780120-63780139 None:intergenic 15.0%
!! AAACACAAAAAAAATCAAAA+TGG - chr5.4:63779745-63779764 None:intergenic 15.0%
!! AACACAAAAAAAATCAAAAT+GGG - chr5.4:63779744-63779763 None:intergenic 15.0%
!! CTAAAAATGAAAATATCAAA+TGG - chr5.4:63780394-63780413 None:intergenic 15.0%
!! TGAATAATAGAATAAAATGT+GGG + chr5.4:63780790-63780809 MS.gene50106:intron 15.0%
!! TTGAATAATAGAATAAAATG+TGG + chr5.4:63780789-63780808 MS.gene50106:intron 15.0%
!!! AATTGAATGTACTATTTTAT+TGG + chr5.4:63780961-63780980 MS.gene50106:intron 15.0%
!!! ATATAAAAAGTATCAAATTG+GGG - chr5.4:63780150-63780169 None:intergenic 15.0%
!!! ATGTAAATATTCATAACTTT+TGG + chr5.4:63780574-63780593 MS.gene50106:intron 15.0%
!!! TTTAATTTGATTGATTAACA+AGG + chr5.4:63779876-63779895 MS.gene50106:intron 15.0%
!!! TTTGATTTTTTTTGTGTTTA+GGG + chr5.4:63779746-63779765 MS.gene50106:intron 15.0%
!!! TTTTAAACATTCATGTTTTT+GGG + chr5.4:63780336-63780355 MS.gene50106:intron 15.0%
!!! TTTTGATTTTTTTTGTGTTT+AGG + chr5.4:63779745-63779764 MS.gene50106:intron 15.0%
!!! TTTTTAAACATTCATGTTTT+TGG + chr5.4:63780335-63780354 MS.gene50106:intron 15.0%
!!! TTTTTAATGTTGATGTTTTT+GGG + chr5.4:63780190-63780209 MS.gene50106:intron 15.0%
!!! TTTTTTAATGTTGATGTTTT+TGG + chr5.4:63780189-63780208 MS.gene50106:intron 15.0%
!! AATATACCACAAATCTTAAT+AGG - chr5.4:63779696-63779715 None:intergenic 20.0%
!! AATATACCCTAAAATTCAAA+AGG - chr5.4:63780752-63780771 None:intergenic 20.0%
!! ACACAAAAAAAATCAAAATG+GGG - chr5.4:63779743-63779762 None:intergenic 20.0%
!! ATATGCCTTAAAAACTAAAA+GGG - chr5.4:63780819-63780838 None:intergenic 20.0%
!! TATATGCCTTAAAAACTAAA+AGG - chr5.4:63780820-63780839 None:intergenic 20.0%
!!! AAAAATTGGTTTATCCTTTT+AGG + chr5.4:63780633-63780652 MS.gene50106:intron 20.0%
!!! AAAATTGGTTTATCCTTTTA+GGG + chr5.4:63780634-63780653 MS.gene50106:intron 20.0%
!!! AATTTGGAGCTTTTAATTTT+AGG + chr5.4:63779974-63779993 MS.gene50106:intron 20.0%
!!! AATTTTCAGGTGATATTTAT+GGG + chr5.4:63781016-63781035 MS.gene50106:intron 20.0%
!!! AGGTTGAACATATATTTTTA+GGG + chr5.4:63780539-63780558 MS.gene50106:intron 20.0%
!!! ATTTGGAGCTTTTAATTTTA+GGG + chr5.4:63779975-63779994 MS.gene50106:intron 20.0%
!!! CTTAATTTGTTTGATTTGTA+GGG + chr5.4:63780601-63780620 MS.gene50106:intron 20.0%
!!! GGGTTTAAAATACATTTTTA+GGG + chr5.4:63780037-63780056 MS.gene50106:intron 20.0%
!!! TCTTAATTTGTTTGATTTGT+AGG + chr5.4:63780600-63780619 MS.gene50106:intron 20.0%
!!! TTAGAACCTTTTGAATTTTA+GGG + chr5.4:63780743-63780762 MS.gene50106:intron 20.0%
!!! TTTGAATTTTAGGGTATATT+TGG + chr5.4:63780752-63780771 MS.gene50106:intron 20.0%
!!! TTTTAAATGTTCATGCTTTT+GGG + chr5.4:63779934-63779953 MS.gene50106:intron 20.0%
!!! TTTTGGGTATCTTAATTTTT+GGG + chr5.4:63780093-63780112 MS.gene50106:intron 20.0%
!!! TTTTTAAATGTTCATGCTTT+TGG + chr5.4:63779933-63779952 MS.gene50106:intron 20.0%
!!! TTTTTAAGGCATATAAAGTT+TGG + chr5.4:63780825-63780844 MS.gene50106:intron 20.0%
!!! TTTTTATTACGAAGGTTTTA+AGG + chr5.4:63779849-63779868 MS.gene50106:intron 20.0%
!!! TTTTTGGGTATCTTAATTTT+TGG + chr5.4:63780092-63780111 MS.gene50106:intron 20.0%
! AAAGCCATATATCCTATTAA+TGG - chr5.4:63781405-63781424 None:intergenic 25.0%
! AAGGATTGAAAAAGAAAATG+TGG + chr5.4:63779895-63779914 MS.gene50106:intron 25.0%
! ATTAAAATTGAAATCCCTGT+TGG + chr5.4:63780993-63781012 MS.gene50106:intron 25.0%
! TAGGGATTGAAGAAAAAAAT+TGG + chr5.4:63780619-63780638 MS.gene50106:intron 25.0%
! TTCCATTCCTTAATTAACTA+AGG + chr5.4:63782077-63782096 MS.gene50106:intron 25.0%
!! AATGTACTATTTTATTGGTC+TGG + chr5.4:63780966-63780985 MS.gene50106:intron 25.0%
!! AGTCCAATTATCTCTTTTTA+GGG + chr5.4:63781267-63781286 MS.gene50106:CDS 25.0%
!! GAGGTTGAACATATATTTTT+AGG + chr5.4:63780538-63780557 MS.gene50106:intron 25.0%
!! GTTAGAACCTTTTGAATTTT+AGG + chr5.4:63780742-63780761 MS.gene50106:intron 25.0%
!! TGTTTAATGTTGATGCTTTT+AGG + chr5.4:63780431-63780450 MS.gene50106:intron 25.0%
!! TTTTACCTTCTTTGTGAAAA+AGG + chr5.4:63781806-63781825 MS.gene50106:intron 25.0%
!!! AGTTTCAAGCTTTTAGTTTT+AGG + chr5.4:63780472-63780491 MS.gene50106:intron 25.0%
!!! ATGCTTAATTTGTTGCAATT+TGG + chr5.4:63779958-63779977 MS.gene50106:intron 25.0%
!!! GAATGGTTTTTTTAGTTGTT+TGG + chr5.4:63779773-63779792 MS.gene50106:intron 25.0%
!!! GAATTTTCAGGTGATATTTA+TGG + chr5.4:63781015-63781034 MS.gene50106:intron 25.0%
!!! GGGGTTTAAAATACATTTTT+AGG + chr5.4:63780036-63780055 MS.gene50106:intron 25.0%
!!! GTATGTTTGATTTGATTGAT+TGG + chr5.4:63780254-63780273 MS.gene50106:intron 25.0%
!!! GTGTATTTGATTTGATTGTT+GGG + chr5.4:63779997-63780016 MS.gene50106:intron 25.0%
!!! GTTTCAAGCTTTTAGTTTTA+GGG + chr5.4:63780473-63780492 MS.gene50106:intron 25.0%
!!! GTTTGAATCTTTTGGTTTTA+TGG + chr5.4:63780232-63780251 MS.gene50106:intron 25.0%
!!! TGAAAACTTTTTCCTTTTGA+GGG + chr5.4:63781361-63781380 MS.gene50106:CDS 25.0%
!!! TGATTTTTGTGGTCTTATAA+AGG + chr5.4:63782124-63782143 MS.gene50106:intron 25.0%
!!! TGTATTTGATTTGATTGTTG+GGG + chr5.4:63779998-63780017 MS.gene50106:intron 25.0%
!!! TTTAGTTGTTTGGTGATTTT+GGG + chr5.4:63779783-63779802 MS.gene50106:intron 25.0%
!!! TTTGATTTGATTGATTGGTA+GGG + chr5.4:63780259-63780278 MS.gene50106:intron 25.0%
!!! TTTGATTTGGTTGATTTGTA+GGG + chr5.4:63780500-63780519 MS.gene50106:intron 25.0%
!!! TTTTAGTTGTTTGGTGATTT+TGG + chr5.4:63779782-63779801 MS.gene50106:intron 25.0%
AAAAAGAGATAATTGGACTG+AGG - chr5.4:63781266-63781285 None:intergenic 30.0%
AACCAGACCTTAGTTAATTA+AGG - chr5.4:63782087-63782106 None:intergenic 30.0%
ATAAGCAAGCAAAAGACATA+TGG - chr5.4:63781327-63781346 None:intergenic 30.0%
CTAACTATATATGCCCTAAA+AGG - chr5.4:63780650-63780669 None:intergenic 30.0%
GACCTTAGTTAATTAAGGAA+TGG - chr5.4:63782082-63782101 None:intergenic 30.0%
GCAGTTAAAAGATTCTGTAA+AGG - chr5.4:63781471-63781490 None:intergenic 30.0%
GCTTCCATTAATAGGATATA+TGG + chr5.4:63781398-63781417 MS.gene50106:CDS 30.0%
GTAATCTGTAATCTTTCTAC+AGG + chr5.4:63781863-63781882 MS.gene50106:intron 30.0%
GTATATTTGGTTGTTTGGTA+GGG + chr5.4:63780765-63780784 MS.gene50106:intron 30.0%
TTAAGGCATATAAAGTTTGG+AGG + chr5.4:63780828-63780847 MS.gene50106:intron 30.0%
TTAGGGTATATTTGGTTGTT+TGG + chr5.4:63780760-63780779 MS.gene50106:intron 30.0%
TTCCTTAATTAACTAAGGTC+TGG + chr5.4:63782082-63782101 MS.gene50106:intron 30.0%
TTTATGATGAATGTAAGCGA+AGG + chr5.4:63781423-63781442 MS.gene50106:CDS 30.0%
! AAATCCCTGTTTGAATTTTC+AGG + chr5.4:63781182-63781201 MS.gene50106:intron 30.0%
! AGACTTGTAGATTGTTGTTA+AGG + chr5.4:63780914-63780933 MS.gene50106:intron 30.0%
! CAGTCCAATTATCTCTTTTT+AGG + chr5.4:63781266-63781285 MS.gene50106:CDS 30.0%
! CTCAAAAGGAAAAAGTTTTC+AGG - chr5.4:63781362-63781381 None:intergenic 30.0%
! GTCCAATTATCTCTTTTTAG+GGG + chr5.4:63781268-63781287 MS.gene50106:CDS 30.0%
! TGTTGCAAGTTTGAATCTTT+TGG + chr5.4:63780224-63780243 MS.gene50106:intron 30.0%
! TTGATTTGATTGATTGGTAG+GGG + chr5.4:63780260-63780279 MS.gene50106:intron 30.0%
! TTTAGGGGTTTTTATTACGA+AGG + chr5.4:63779841-63779860 MS.gene50106:intron 30.0%
! TTTGTGTTTAGGGTTTAGAA+TGG + chr5.4:63779756-63779775 MS.gene50106:intron 30.0%
! TTTTGCAAGTTTGTAGCTTT+TGG + chr5.4:63779817-63779836 MS.gene50106:intron 30.0%
!! ACTATTTTATTGGTCTGGTA+TGG + chr5.4:63780971-63780990 MS.gene50106:intron 30.0%
!! CTAAACTTGTGTTGCTTTAA+TGG + chr5.4:63781829-63781848 MS.gene50106:intron 30.0%
!! CTGAAAACTTTTTCCTTTTG+AGG + chr5.4:63781360-63781379 MS.gene50106:CDS 30.0%
!! GAAAACTTTTTCCTTTTGAG+GGG + chr5.4:63781362-63781381 MS.gene50106:CDS 30.0%
!! GCGTTTGAATTTGATTTTTG+TGG + chr5.4:63782113-63782132 MS.gene50106:intron 30.0%
!! GGTGTATTTGATTTGATTGT+TGG + chr5.4:63779996-63780015 MS.gene50106:intron 30.0%
!! GTTTGATTTGATTGATTGGT+AGG + chr5.4:63780258-63780277 MS.gene50106:intron 30.0%
!! GTTTGATTTGGTTGATTTGT+AGG + chr5.4:63780499-63780518 MS.gene50106:intron 30.0%
!! TAAAAAGTATCAAATTGGGG+TGG - chr5.4:63780147-63780166 None:intergenic 30.0%
!! TTTAGCCTTTTTCACAAAGA+AGG - chr5.4:63781814-63781833 None:intergenic 30.0%
!!! AATTTTCAGGTGACATTCAT+GGG + chr5.4:63781195-63781214 MS.gene50106:intron 30.0%
!!! AGTTTGTAGCTTTTGGTTTT+AGG + chr5.4:63779824-63779843 MS.gene50106:intron 30.0%
!!! CTTTTAGGGCATATATAGTT+AGG + chr5.4:63780648-63780667 MS.gene50106:intron 30.0%
!!! GGTTACCCTTTTAGTTTTTA+AGG + chr5.4:63780811-63780830 MS.gene50106:intron 30.0%
!!! GGTTATTTTTAAGTGTGTTG+TGG + chr5.4:63780935-63780954 MS.gene50106:intron 30.0%
!!! GTTTGTAGCTTTTGGTTTTA+GGG + chr5.4:63779825-63779844 MS.gene50106:intron 30.0%
!!! GTTTTAGGGTATGTTTGATT+TGG + chr5.4:63780487-63780506 MS.gene50106:intron 30.0%
!!! TTTGTAGCTTTTGGTTTTAG+GGG + chr5.4:63779826-63779845 MS.gene50106:intron 30.0%
AAAAAGAATGACACGAAGGA+GGG - chr5.4:63781790-63781809 None:intergenic 35.0%
AAAAATTCAGCCACCTTATC+AGG - chr5.4:63781704-63781723 None:intergenic 35.0%
AAAATATTGTGCATGCATGG+TGG + chr5.4:63781518-63781537 MS.gene50106:CDS 35.0%
AAAATTCAGCCACCTTATCA+GGG - chr5.4:63781703-63781722 None:intergenic 35.0%
AATCTTTCTACAGGTTGTAG+AGG + chr5.4:63781872-63781891 MS.gene50106:intron 35.0%
AGGGATTGAAGAAGAAAATG+AGG + chr5.4:63780519-63780538 MS.gene50106:intron 35.0%
AGGTAAAAAGAATGACACGA+AGG - chr5.4:63781794-63781813 None:intergenic 35.0%
ATCACCTGAAAATTCCAACA+GGG - chr5.4:63781010-63781029 None:intergenic 35.0%
GAAGCTCCTATTAAGATTTG+TGG + chr5.4:63779687-63779706 MS.gene50106:CDS 35.0%
GAGAAAATATTGTGCATGCA+TGG + chr5.4:63781515-63781534 MS.gene50106:CDS 35.0%
GGTATATTTGGTTGTTTGGT+AGG + chr5.4:63780764-63780783 MS.gene50106:intron 35.0%
GTCACCTGAAAATTCAAACA+GGG - chr5.4:63781189-63781208 None:intergenic 35.0%
GTCCCCTAAAAAGAGATAAT+TGG - chr5.4:63781273-63781292 None:intergenic 35.0%
TAAAAAGAATGACACGAAGG+AGG - chr5.4:63781791-63781810 None:intergenic 35.0%
TATCACCTGAAAATTCCAAC+AGG - chr5.4:63781011-63781030 None:intergenic 35.0%
TCAAAGTCTGTTGTCAATAG+CGG + chr5.4:63782153-63782172 MS.gene50106:intron 35.0%
TCAAATTCACCACAGTAGTT+TGG - chr5.4:63781948-63781967 None:intergenic 35.0%
TCACAAATTTGGACCAAATC+CGG + chr5.4:63781555-63781574 MS.gene50106:CDS 35.0%
TGATGTCAAACAAGATGTGA+TGG + chr5.4:63782054-63782073 MS.gene50106:intron 35.0%
TGGGGATTGAAGAAGAAAAT+GGG + chr5.4:63780016-63780035 MS.gene50106:intron 35.0%
TGTCACCTGAAAATTCAAAC+AGG - chr5.4:63781190-63781209 None:intergenic 35.0%
TGTTAAGGCTCTTTGAGTAT+GGG + chr5.4:63781231-63781250 MS.gene50106:CDS 35.0%
TTGGGGATTGAAGAAGAAAA+TGG + chr5.4:63780015-63780034 MS.gene50106:intron 35.0%
TTGTTAAGGCTCTTTGAGTA+TGG + chr5.4:63781230-63781249 MS.gene50106:CDS 35.0%
! AAATCCCTGTTGGAATTTTC+AGG + chr5.4:63781003-63781022 MS.gene50106:intron 35.0%
! ATTTTTGACAAGGCATGACT+TGG + chr5.4:63781718-63781737 MS.gene50106:CDS 35.0%
! GACACAAAACGACTGTATTT+TGG + chr5.4:63782342-63782361 MS.gene50106:CDS 35.0%
! GCTTCAAGTTCAAGCAAATT+AGG - chr5.4:63779672-63779691 None:intergenic 35.0%
! TCAAAATGGGGTGTCAAAAA+CGG - chr5.4:63779731-63779750 None:intergenic 35.0%
!!! AACTTTGTTTTCTTCTCTGC+AGG - chr5.4:63782032-63782051 None:intergenic 35.0%
!!! ACTGTATTTTGGTCATTTCG+AGG + chr5.4:63782353-63782372 MS.gene50106:CDS 35.0%
!!! GAATTTTCAGGTGACATTCA+TGG + chr5.4:63781194-63781213 MS.gene50106:intron 35.0%
AAGAGATAATTGGACTGAGG+AGG - chr5.4:63781263-63781282 None:intergenic 40.0%
ACGAGTGTGCTTCCATTAAT+AGG + chr5.4:63781390-63781409 MS.gene50106:CDS 40.0%
GATCCTGGTAAAGATGTGAA+GGG + chr5.4:63781638-63781657 MS.gene50106:CDS 40.0%
GGGGATTGAAGAAGAAAATG+GGG + chr5.4:63780017-63780036 MS.gene50106:intron 40.0%
GGTATGAATTCTTTGCAGAC+AGG + chr5.4:63781898-63781917 MS.gene50106:CDS 40.0%
GTTAAGGCTCTTTGAGTATG+GGG + chr5.4:63781232-63781251 MS.gene50106:CDS 40.0%
TGATCCTGGTAAAGATGTGA+AGG + chr5.4:63781637-63781656 MS.gene50106:CDS 40.0%
TGGTAAAGATGTGAAGGGTT+GGG + chr5.4:63781643-63781662 MS.gene50106:CDS 40.0%
TGTGGTGAATTTGACAATGC+TGG + chr5.4:63781954-63781973 MS.gene50106:CDS 40.0%
TTAAGGCTCTTTGAGTATGG+GGG + chr5.4:63781233-63781252 MS.gene50106:CDS 40.0%
TTCTACAGGTTGTAGAGGAT+GGG + chr5.4:63781877-63781896 MS.gene50106:intron 40.0%
TTTAGGGGAGAGAGAAACAA+GGG + chr5.4:63782419-63782438 MS.gene50106:CDS 40.0%
TTTCTACAGGTTGTAGAGGA+TGG + chr5.4:63781876-63781895 MS.gene50106:intron 40.0%
! AGGTGGCTGAATTTTTGACA+AGG + chr5.4:63781708-63781727 MS.gene50106:CDS 40.0%
! CAAAATGGGGTGTCAAAAAC+GGG - chr5.4:63779730-63779749 None:intergenic 40.0%
! GATAACTGAACTTGCTTTCC+AGG - chr5.4:63779594-63779613 None:intergenic 40.0%
! GGATTTGGTCCAAATTTGTG+AGG - chr5.4:63781556-63781575 None:intergenic 40.0%
! TGGTCATTTCGAGGTTTTTC+CGG + chr5.4:63782362-63782381 MS.gene50106:CDS 40.0%
! TTTTCAGCTCCAAACTACTG+TGG + chr5.4:63781936-63781955 MS.gene50106:CDS 40.0%
!! ATCTTTTAACTGCCTTCCTG+TGG + chr5.4:63781478-63781497 MS.gene50106:CDS 40.0%
!! GGCAGTACAGTGATTTGTTA+AGG + chr5.4:63781216-63781235 MS.gene50106:CDS 40.0%
ACTCGTGATTTCCCCTCAAA+AGG - chr5.4:63781376-63781395 None:intergenic 45.0%
AGGGAAAAGCGGATCAAAAG+CGG + chr5.4:63782240-63782259 MS.gene50106:CDS 45.0%
AGGGGTTGAAGAAGCAAATG+TGG + chr5.4:63780278-63780297 MS.gene50106:intron 45.0%
ATCACAGAGCAAACCAGTGT+CGG - chr5.4:63781606-63781625 None:intergenic 45.0%
CAACCCTTCACATCTTTACC+AGG - chr5.4:63781644-63781663 None:intergenic 45.0%
CCTGATGAGCACGACAAATA+AGG - chr5.4:63781745-63781764 None:intergenic 45.0%
CTGGTAAAGATGTGAAGGGT+TGG + chr5.4:63781642-63781661 MS.gene50106:CDS 45.0%
GAAGGTTTAACGTGAGGCTT+TGG + chr5.4:63781441-63781460 MS.gene50106:CDS 45.0%
GCTTTCCAGGTCGAGATAAT+CGG - chr5.4:63779581-63779600 None:intergenic 45.0%
GGTAAAGATGTGAAGGGTTG+GGG + chr5.4:63781644-63781663 MS.gene50106:CDS 45.0%
GGTCCAAATTTGTGAGGTCA+GGG - chr5.4:63781550-63781569 None:intergenic 45.0%
GTAAGCGAAGGTTTAACGTG+AGG + chr5.4:63781435-63781454 MS.gene50106:CDS 45.0%
GTCCAAATTTGTGAGGTCAG+GGG - chr5.4:63781549-63781568 None:intergenic 45.0%
GTTTGCTCTGTGATCTGCTT+TGG + chr5.4:63781612-63781631 MS.gene50106:CDS 45.0%
TCATCTATAAGAGCTGCCAC+AGG - chr5.4:63781497-63781516 None:intergenic 45.0%
TCTCTGCAGGCTTAAGAATC+TGG - chr5.4:63782019-63782038 None:intergenic 45.0%
TCTTTCCTCTTCCTCTTCCT+CGG - chr5.4:63782475-63782494 None:intergenic 45.0%
TGCAGGCTTAAGAATCTGGA+AGG - chr5.4:63782015-63782034 None:intergenic 45.0%
TGGTCCAAATTTGTGAGGTC+AGG - chr5.4:63781551-63781570 None:intergenic 45.0%
TGTGTCTCTCTCTCTCTTCA+TGG - chr5.4:63782328-63782347 None:intergenic 45.0%
TTAGGGGAGAGAGAAACAAG+GGG + chr5.4:63782420-63782439 MS.gene50106:CDS 45.0%
TTCCCCTGACCTCACAAATT+TGG + chr5.4:63781544-63781563 MS.gene50106:CDS 45.0%
! CCTTATTTGTCGTGCTCATC+AGG + chr5.4:63781742-63781761 MS.gene50106:CDS 45.0%
! CGGTGTTGGATGACATTATC+CGG + chr5.4:63779541-63779560 MS.gene50106:CDS 45.0%
! CTACACTTTTGGCCCTGATA+AGG + chr5.4:63781688-63781707 MS.gene50106:CDS 45.0%
! CTTATCAGGGCCAAAAGTGT+AGG - chr5.4:63781690-63781709 None:intergenic 45.0%
! CTTTAGGGGAGAGAGAAACA+AGG + chr5.4:63782418-63782437 MS.gene50106:CDS 45.0%
!! AGACGTGCAGCTTGTTGTTA+AGG + chr5.4:63781093-63781112 MS.gene50106:intron 45.0%
!!! AGAGGAGTGTCCTACACTTT+TGG + chr5.4:63781677-63781696 MS.gene50106:CDS 45.0%
AAGAATGACACGAAGGAGGG+AGG - chr5.4:63781787-63781806 None:intergenic 50.0%
ACCAGCTCAGGTGATTGATG+AGG + chr5.4:63779518-63779537 MS.gene50106:CDS 50.0%
AGAGAAACAAGGGGAGGAAG+AGG + chr5.4:63782429-63782448 MS.gene50106:CDS 50.0%
AGCTCAGGTGATTGATGAGG+CGG + chr5.4:63779521-63779540 MS.gene50106:CDS 50.0%
CTATAAGAGCTGCCACAGGA+AGG - chr5.4:63781493-63781512 None:intergenic 50.0%
GAGAAACAAGGGGAGGAAGA+GGG + chr5.4:63782430-63782449 MS.gene50106:CDS 50.0%
GAGAACTGAATCCAGATCCG+AGG + chr5.4:63782455-63782474 MS.gene50106:CDS 50.0%
GATCTGCTTTGGTCTGATCC+TGG + chr5.4:63781623-63781642 MS.gene50106:CDS 50.0%
GGGAAAAGCGGATCAAAAGC+GGG + chr5.4:63782241-63782260 MS.gene50106:CDS 50.0%
GGTTGGGGCATGAATGATAG+AGG + chr5.4:63781659-63781678 MS.gene50106:CDS 50.0%
TAGGGGACTATGTCGATCGT+GGG + chr5.4:63781285-63781304 MS.gene50106:CDS 50.0%
TCAATCACCTGAGCTGGTTG+CGG - chr5.4:63779516-63779535 None:intergenic 50.0%
TCACAGAGCAAACCAGTGTC+GGG - chr5.4:63781605-63781624 None:intergenic 50.0%
TGAATCCAGATCCGAGGAAG+AGG + chr5.4:63782461-63782480 MS.gene50106:CDS 50.0%
TGACATTATCCGGCGACTCA+CGG + chr5.4:63779551-63779570 MS.gene50106:CDS 50.0%
TGCTGGTGCAATGATGAGTG+TGG + chr5.4:63781971-63781990 MS.gene50106:CDS 50.0%
TTAGGGGACTATGTCGATCG+TGG + chr5.4:63781284-63781303 MS.gene50106:CDS 50.0%
TTGTCAATAGCGGCCAAACG+CGG + chr5.4:63782163-63782182 MS.gene50106:intron 50.0%
! AGCAAACCAGTGTCGGGAAT+AGG - chr5.4:63781599-63781618 None:intergenic 50.0%
! AGGTTTTTCCGGCGAGCTTT+AGG + chr5.4:63782402-63782421 MS.gene50106:CDS 50.0%
! AGGTTTTTCCGGCGAGTTTC+CGG + chr5.4:63782373-63782392 MS.gene50106:CDS 50.0%
! CACTTTTGGCCCTGATAAGG+TGG + chr5.4:63781691-63781710 MS.gene50106:CDS 50.0%
! GGTTTTTCCGGCGAGCTTTA+GGG + chr5.4:63782403-63782422 MS.gene50106:CDS 50.0%
! TCCGGAGTTGGAGGTTTTTC+CGG + chr5.4:63782391-63782410 MS.gene50106:CDS 50.0%
!! GTTTTTCCGGCGAGCTTTAG+GGG + chr5.4:63782404-63782423 MS.gene50106:CDS 50.0%
ATATTGTGGAGCGGAGCGGT+CGG + chr5.4:63782277-63782296 MS.gene50106:CDS 55.0%
CAGATCCGAGGAAGAGGAAG+AGG + chr5.4:63782467-63782486 MS.gene50106:CDS 55.0%
CCAGTTCCTATTCCCGACAC+TGG + chr5.4:63781590-63781609 MS.gene50106:CDS 55.0%
CGCAATATTGTGGAGCGGAG+CGG + chr5.4:63782273-63782292 MS.gene50106:CDS 55.0%
CGCTCCGCTCCACAATATTG+CGG - chr5.4:63782275-63782294 None:intergenic 55.0%
CTCTTCCTCTTCCTCGGATC+TGG - chr5.4:63782469-63782488 None:intergenic 55.0%
GAACTGGACGAGGCAGATTC+CGG - chr5.4:63781577-63781596 None:intergenic 55.0%
GACGAGGCAGATTCCGGATT+TGG - chr5.4:63781571-63781590 None:intergenic 55.0%
GAGGTCCGATTATCTCGACC+TGG + chr5.4:63779573-63779592 MS.gene50106:CDS 55.0%
GCCGGAAAAACCTCCAACTC+CGG - chr5.4:63782395-63782414 None:intergenic 55.0%
GCCTCATCAATCACCTGAGC+TGG - chr5.4:63779522-63779541 None:intergenic 55.0%
GGTGATTGATGAGGCGGTGT+TGG + chr5.4:63779527-63779546 MS.gene50106:CDS 55.0%
GTTTCGCGGCCGCAATATTG+TGG + chr5.4:63782263-63782282 MS.gene50106:CDS 55.0%
TCGGGAATAGGAACTGGACG+AGG - chr5.4:63781587-63781606 None:intergenic 55.0%
! CCAGTGTCGGGAATAGGAAC+TGG - chr5.4:63781593-63781612 None:intergenic 55.0%
! CGGATCAAAAGCGGGTTTCG+CGG + chr5.4:63782249-63782268 MS.gene50106:CDS 55.0%
!! CTGACGCGCTAGGCTGTTTT+CGG - chr5.4:63782199-63782218 None:intergenic 55.0%
ACCACAACCGCAACCAGCTC+AGG + chr5.4:63779506-63779525 MS.gene50106:CDS 60.0%
ACCTGAGCTGGTTGCGGTTG+TGG - chr5.4:63779510-63779529 None:intergenic 60.0%
AGTCGCGCGGTAGGGAAAAG+CGG + chr5.4:63782229-63782248 MS.gene50106:CDS 60.0%
CATTATCCGGCGACTCACGG+AGG + chr5.4:63779554-63779573 MS.gene50106:CDS 60.0%
CTCCAACTCCGGAAACTCGC+CGG - chr5.4:63782384-63782403 None:intergenic 60.0%
CTCTCTCCCCTAAAGCTCGC+CGG - chr5.4:63782413-63782432 None:intergenic 60.0%
GCGGCCGCAATATTGTGGAG+CGG + chr5.4:63782268-63782287 MS.gene50106:CDS 60.0%
GGGGAGAGAGAAACAAGGGG+AGG + chr5.4:63782423-63782442 MS.gene50106:CDS 60.0%
TATTGTGGAGCGGAGCGGTC+GGG + chr5.4:63782278-63782297 MS.gene50106:CDS 60.0%
TGAGCTGGTTGCGGTTGTGG+TGG - chr5.4:63779507-63779526 None:intergenic 60.0%
TTCCGGCGAGTTTCCGGAGT+TGG + chr5.4:63782379-63782398 MS.gene50106:CDS 60.0%
! CGGTCGGGTTGCGGTAAAAG+CGG + chr5.4:63782293-63782312 MS.gene50106:CDS 60.0%
! CTTTTCCCTACCGCGCGACT+CGG - chr5.4:63782229-63782248 None:intergenic 60.0%
AATAGCGGCCAAACGCGGCG+CGG + chr5.4:63782168-63782187 MS.gene50106:intron 65.0%
ATCGGACCTCCGTGAGTCGC+CGG - chr5.4:63779563-63779582 None:intergenic 65.0%
CGGCGAGTTTCCGGAGTTGG+AGG + chr5.4:63782382-63782401 MS.gene50106:CDS 65.0%
CAGAGCGCGACCGAGTCGCG+CGG + chr5.4:63782216-63782235 MS.gene50106:CDS 75.0%
CGCGACCGAGTCGCGCGGTA+GGG + chr5.4:63782221-63782240 MS.gene50106:CDS 75.0%
CGGTCGCGCTCTGACGCGCT+AGG - chr5.4:63782209-63782228 None:intergenic 75.0%
! GGAGCGGAGCGGTCGGGTTG+CGG + chr5.4:63782284-63782303 MS.gene50106:CDS 75.0%
! GCGCGACCGAGTCGCGCGGT+AGG + chr5.4:63782220-63782239 MS.gene50106:CDS 80.0%
! CGGCCAAACGCGGCGCGGCG+CGG + chr5.4:63782173-63782192 MS.gene50106:CDS 85.0%
! CGGCCGCGCCGCGCCGCGTT+TGG - chr5.4:63782179-63782198 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 63779486 63782497 63779486 ID=MS.gene50106
chr5.4 mRNA 63779486 63782497 63779486 ID=MS.gene50106.t1;Parent=MS.gene50106
chr5.4 exon 63779486 63779708 63779486 ID=MS.gene50106.t1.exon1;Parent=MS.gene50106.t1
chr5.4 CDS 63779486 63779708 63779486 ID=cds.MS.gene50106.t1;Parent=MS.gene50106.t1
chr5.4 exon 63781204 63781763 63781204 ID=MS.gene50106.t1.exon2;Parent=MS.gene50106.t1
chr5.4 CDS 63781204 63781763 63781204 ID=cds.MS.gene50106.t1;Parent=MS.gene50106.t1
chr5.4 exon 63781885 63782048 63781885 ID=MS.gene50106.t1.exon3;Parent=MS.gene50106.t1
chr5.4 CDS 63781885 63782048 63781885 ID=cds.MS.gene50106.t1;Parent=MS.gene50106.t1
chr5.4 exon 63782173 63782497 63782173 ID=MS.gene50106.t1.exon4;Parent=MS.gene50106.t1
chr5.4 CDS 63782173 63782497 63782173 ID=cds.MS.gene50106.t1;Parent=MS.gene50106.t1
Gene Sequence

>MS.gene50106

ATGAGTGCACAAGGACAACCACCACAACCGCAACCAGCTCAGGTGATTGATGAGGCGGTGTTGGATGACATTATCCGGCGACTCACGGAGGTCCGATTATCTCGACCTGGAAAGCAAGTTCAGTTATCTGAATCTGAGATCAAGCAGCTTTGTTCTGCTTCTAGAGATATCTTTCTTCAACAACCTAATTTGCTTGAACTTGAAGCTCCTATTAAGATTTGTGGTATATTTTTTATGCTTACCCGTTTTTGACACCCCATTTTGATTTTTTTTGTGTTTAGGGTTTAGAATGGTTTTTTTAGTTGTTTGGTGATTTTGGGTGTGCTTAATTTTTTGCAAGTTTGTAGCTTTTGGTTTTAGGGGTTTTTATTACGAAGGTTTTAAGGTATGTTTAATTTGATTGATTAACAAGGATTGAAAAAGAAAATGTGGATTAATTTTTTTTTATTTTTAAATGTTCATGCTTTTGGGTATGCTTAATTTGTTGCAATTTGGAGCTTTTAATTTTAGGGTGTATTTGATTTGATTGTTGGGGATTGAAGAAGAAAATGGGGTTTAAAATACATTTTTAGGGTTTAAACTTAAACATTTTTTTAAATATTCATGTTTTTGGGTATCTTAATTTTTGGGTCCTTTTTTCTTAGCTTTTATTTTACAGCCACCCCAATTTGATACTTTTTATATTTAGGGTTTAAATTACTTCTTTTTTAATGTTGATGTTTTTGGGTGTGCTTAATTTGTTGCAAGTTTGAATCTTTTGGTTTTATGGTATGTTTGATTTGATTGATTGGTAGGGGTTGAAGAAGCAAATGTGGTTTAAAATATATTTTTACGGTTTAAAATACATTTTTTTTAAACATTCATGTTTTTGGGTACTCTTTTTTATCTTGTATTTTTCAGCTACTCCATTTGATATTTTCATTTTTAGTGTTTAGATTACTTCTTTGTTTAATGTTGATGCTTTTAGGCATGCTTAATTTGTTGCAAGTTTCAAGCTTTTAGTTTTAGGGTATGTTTGATTTGGTTGATTTGTAGGGATTGAAGAAGAAAATGAGGTTGAACATATATTTTTAGGGTTTAATTTTTTTATGTAAATATTCATAACTTTTGGTATTCTTAATTTGTTTGATTTGTAGGGATTGAAGAAAAAAATTGGTTTATCCTTTTAGGGCATATATAGTTAGGAGTTTTGCGAGAGAAGTTAGTTTATGAACTTTTCTCTAAGTGTTTTTTTTTTCTTTCTATACTTGTTGCAAGTTAGAACCTTTTGAATTTTAGGGTATATTTGGTTGTTTGGTAGGGATTGAATAATAGAATAAAATGTGGGTTACCCTTTTAGTTTTTAAGGCATATAAAGTTTGGAGGTTTGTGAGAAAAACTATGTTTATGAACTTTTCTTTAAGTGTTTATTGTTTTTGCTTTGTCTTTAGACTTGTAGATTGTTGTTAAGGTTATTTTTAAGTGTGTTGTGGTTGAATTGAATGTACTATTTTATTGGTCTGGTATGATTAAAATTGAAATCCCTGTTGGAATTTTCAGGTGATATTTATGGGCAGACTATGTTTATGAACTTTTCTTTAAGTGTTTATTGTTTTTGCTTTGTCTTTAGACGTGCAGCTTGTTGTTAAGGTTATTTTTAAGTGTGTTGTGATTGAATTGAATGTACTATTTTATTGGTCTGGTATGGTTAAAGTTGAAATCCCTGTTTGAATTTTCAGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTCTTTGAGTATGGGGGTTTGCCTCCTCAGTCCAATTATCTCTTTTTAGGGGACTATGTCGATCGTGGGAAGCAGAGCTTAGAAACCATATGTCTTTTGCTTGCTTATAAAATCAAATATCCTGAAAACTTTTTCCTTTTGAGGGGAAATCACGAGTGTGCTTCCATTAATAGGATATATGGCTTTTATGATGAATGTAAGCGAAGGTTTAACGTGAGGCTTTGGAAAGCCTTTACAGAATCTTTTAACTGCCTTCCTGTGGCAGCTCTTATAGATGAGAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGACCTCACAAATTTGGACCAAATCCGGAATCTGCCTCGTCCAGTTCCTATTCCCGACACTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCTGGTAAAGATGTGAAGGGTTGGGGCATGAATGATAGAGGAGTGTCCTACACTTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAGGCATGACTTGGACCTTATTTGTCGTGCTCATCAGGTCACTATGTTTTTTTCGCTCCTCCCTCCTTCGTGTCATTCTTTTTACCTTCTTTGTGAAAAAGGCTAAACTTGTGTTGCTTTAATGGTAACTGACACTGTAATCTGTAATCTTTCTACAGGTTGTAGAGGATGGGTATGAATTCTTTGCAGACAGGCAACTTGTTACGATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGACGAGAACTTGATGTGCTCCTTCCAGATTCTTAAGCCTGCAGAGAAGAAAACAAAGTTCGTGATGTCAAACAAGATGTGATGGTTCCATTCCTTAATTAACTAAGGTCTGGTTTTTGTCGCGTTTGAATTTGATTTTTGTGGTCTTATAAAGGTGTTAGTCAAAGTCTGTTGTCAATAGCGGCCAAACGCGGCGCGGCGCGGCCGAAAACAGCCTAGCGCGTCAGAGCGCGACCGAGTCGCGCGGTAGGGAAAAGCGGATCAAAAGCGGGTTTCGCGGCCGCAATATTGTGGAGCGGAGCGGTCGGGTTGCGGTAAAAGCGGACGCTTTCTCCATGAAGAGAGAGAGAGACACAAAACGACTGTATTTTGGTCATTTCGAGGTTTTTCCGGCGAGTTTCCGGAGTTGGAGGTTTTTCCGGCGAGCTTTAGGGGAGAGAGAAACAAGGGGAGGAAGAGGGAAGAGAACTGAATCCAGATCCGAGGAAGAGGAAGAGGAAAGATAA
Protein sequence

>MS.gene50106.t1

MSAQGQPPQPQPAQVIDEAVLDDIIRRLTEVRLSRPGKQVQLSESEIKQLCSASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPQSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTESFNCLPVAALIDEKILCMHGGLSPDLTNLDQIRNLPRPVPIPDTGLLCDLLWSDPGKDVKGWGMNDRGVSYTFGPDKVAEFLTRHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKTNGQTRRGAAENSLARQSATESRGREKRIKSGFRGRNIVERSGRVAVKADAFSMKRERDTKRLYFGHFEVFPASFRSWRFFRRALGERETRGGRGKRTESRSEEEEEER