AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23125

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23125.t1 MTR_7g112870 98.423 317 5 0 1 317 1 317 0.0 640
MS.gene23125.t1 MTR_1g079950 75.235 319 73 2 1 313 26 344 0.0 506
MS.gene23125.t1 MTR_1g079950 75.556 315 71 2 5 313 1 315 3.00e-180 501
MS.gene23125.t1 MTR_1g079950 75.556 315 71 2 5 313 1 315 4.22e-180 500
MS.gene23125.t1 MTR_1g079950 75.556 315 71 2 5 313 1 315 9.36e-180 499
MS.gene23125.t1 MTR_7g116380 74.921 315 73 2 5 313 1 315 1.29e-177 494
MS.gene23125.t1 MTR_7g116380 74.921 315 73 2 5 313 1 315 1.90e-177 494
MS.gene23125.t1 MTR_8g098980 72.500 320 79 3 5 317 1 318 3.94e-177 493
MS.gene23125.t1 MTR_5g081230 76.923 299 66 1 5 300 17 315 5.71e-172 479
MS.gene23125.t1 MTR_1g074880 72.727 308 78 2 5 306 1 308 4.36e-171 478
MS.gene23125.t1 MTR_1g074880 72.727 308 78 2 5 306 1 308 8.44e-171 476
MS.gene23125.t1 MTR_1g043240 71.565 313 83 3 5 312 1 312 7.32e-169 472
MS.gene23125.t1 MTR_8g005010 74.048 289 73 1 10 296 4 292 7.08e-165 461
MS.gene23125.t1 MTR_1g079950 79.116 249 48 1 62 306 34 282 9.16e-151 426
MS.gene23125.t1 MTR_1g074880 76.000 250 56 1 61 306 4 253 1.91e-145 410
MS.gene23125.t1 MTR_1g074880 76.000 250 56 1 61 306 4 253 3.39e-145 409
MS.gene23125.t1 MTR_8g062430 46.154 299 154 3 10 307 7 299 1.23e-95 285
MS.gene23125.t1 MTR_7g107310 46.392 291 149 3 10 299 14 298 1.64e-94 283
MS.gene23125.t1 MTR_5g037200 46.488 299 153 3 10 307 7 299 2.02e-94 282
MS.gene23125.t1 MTR_5g093990 47.331 281 147 1 28 307 17 297 3.70e-93 279
MS.gene23125.t1 MTR_8g085610 46.392 291 149 3 10 299 9 293 3.90e-93 279
MS.gene23125.t1 MTR_8g085610 46.840 269 141 2 32 299 2 269 7.62e-90 270
MS.gene23125.t1 MTR_1g039380 44.643 280 147 4 10 287 3 276 7.21e-88 265
MS.gene23125.t1 MTR_1g039380 46.400 250 131 3 40 287 4 252 6.96e-85 257
MS.gene23125.t1 MTR_2g087530 47.078 308 144 6 8 296 639 946 5.09e-80 262
MS.gene23125.t1 MTR_1g089370 43.068 339 164 8 5 315 524 861 1.22e-79 259
MS.gene23125.t1 MTR_4g050540 46.926 309 145 6 7 296 643 951 3.47e-79 259
MS.gene23125.t1 MTR_2g087530 45.625 320 155 6 7 307 525 844 1.91e-78 256
MS.gene23125.t1 MTR_3g452710 41.786 280 155 5 8 281 169 446 2.38e-71 229
MS.gene23125.t1 MTR_3g452710 41.786 280 155 5 8 281 236 513 1.30e-70 228
MS.gene23125.t1 MTR_2g100130 40.569 281 158 6 8 281 87 365 2.41e-68 219
MS.gene23125.t1 MTR_2g100130 40.569 281 158 6 8 281 186 464 2.27e-67 219
MS.gene23125.t1 MTR_2g100130 40.569 281 158 6 8 281 196 474 3.11e-67 219
MS.gene23125.t1 MTR_2g100130 40.569 281 158 6 8 281 157 435 3.52e-67 218
MS.gene23125.t1 MTR_2g100130 38.889 306 167 7 8 295 196 499 3.56e-67 219
MS.gene23125.t1 MTR_2g100130 38.889 306 166 8 8 295 157 459 7.43e-66 214
MS.gene23125.t1 MTR_2g100130 38.889 306 166 8 8 295 196 498 8.68e-66 215
MS.gene23125.t1 MTR_2g100130 41.111 270 150 6 8 270 196 463 9.35e-66 214
MS.gene23125.t1 MTR_2g100160 37.829 304 176 7 6 298 104 405 6.12e-61 200
MS.gene23125.t1 MTR_5g037200 49.730 185 87 2 10 193 7 186 8.71e-60 191
MS.gene23125.t1 MTR_8g072600 30.938 320 155 11 42 299 119 434 1.96e-34 130
MS.gene23125.t1 MTR_8g072600 32.900 231 115 7 42 236 119 345 2.64e-28 112
MS.gene23125.t1 MTR_2g099710 30.417 240 126 9 61 270 244 472 1.46e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23125.t1 AT5G27840 87.066 317 36 1 1 317 5 316 0.0 570
MS.gene23125.t1 AT3G05580 87.066 317 36 1 1 317 5 316 0.0 570
MS.gene23125.t1 AT5G27840 87.742 310 38 0 1 310 5 314 0.0 567
MS.gene23125.t1 AT5G27840 90.909 297 27 0 1 297 5 301 0.0 566
MS.gene23125.t1 AT5G27840 90.909 297 27 0 1 297 5 301 0.0 566
MS.gene23125.t1 AT3G46820 75.166 302 71 1 2 299 6 307 7.12e-174 484
MS.gene23125.t1 AT5G59160 75.578 303 70 1 2 300 6 308 7.61e-174 484
MS.gene23125.t1 AT5G59160 75.578 303 70 1 2 300 6 308 7.61e-174 484
MS.gene23125.t1 AT5G59160 75.578 303 70 1 2 300 6 308 7.61e-174 484
MS.gene23125.t1 AT2G39840 76.254 299 68 1 5 300 14 312 1.28e-173 484
MS.gene23125.t1 AT2G29400 75.083 301 69 2 5 300 15 314 1.03e-172 481
MS.gene23125.t1 AT1G64040 72.013 318 84 2 5 317 1 318 1.37e-172 481
MS.gene23125.t1 AT4G11240 69.811 318 91 2 5 317 1 318 1.83e-169 473
MS.gene23125.t1 AT3G05580 89.516 248 26 0 1 248 5 252 1.76e-168 468
MS.gene23125.t1 AT5G43380 70.846 319 86 3 5 316 1 319 1.51e-166 466
MS.gene23125.t1 AT5G43380 70.846 319 86 3 5 316 1 319 3.21e-166 465
MS.gene23125.t1 AT5G43380 70.846 319 86 3 5 316 1 319 6.99e-166 464
MS.gene23125.t1 AT2G42500 47.635 296 147 4 6 299 9 298 8.97e-97 288
MS.gene23125.t1 AT5G55260 47.405 289 146 2 28 315 17 300 4.85e-96 286
MS.gene23125.t1 AT3G58500 47.079 291 147 3 10 299 14 298 1.95e-95 285
MS.gene23125.t1 AT1G10430 46.488 299 153 3 10 307 7 299 1.31e-94 283
MS.gene23125.t1 AT1G10430 46.488 299 153 3 10 307 7 299 1.31e-94 283
MS.gene23125.t1 AT1G69960 45.485 299 156 3 10 307 8 300 1.82e-94 282
MS.gene23125.t1 AT1G59830 45.485 299 156 3 10 307 7 299 8.11e-93 278
MS.gene23125.t1 AT4G26720 45.985 274 147 1 28 300 17 290 9.76e-93 278
MS.gene23125.t1 AT5G55260 41.515 330 146 3 28 315 17 341 1.28e-87 266
MS.gene23125.t1 AT3G19980 44.643 280 147 4 10 287 3 276 2.44e-87 264
MS.gene23125.t1 AT1G50370 44.286 280 148 4 10 287 3 276 2.50e-87 264
MS.gene23125.t1 AT1G59830 48.988 247 119 3 10 255 7 247 1.22e-81 248
MS.gene23125.t1 AT4G03080 45.779 308 150 7 5 296 526 832 1.72e-79 259
MS.gene23125.t1 AT2G27210 43.363 339 161 7 7 314 644 982 1.42e-77 255
MS.gene23125.t1 AT2G27210 43.363 339 161 7 7 314 649 987 1.49e-77 255
MS.gene23125.t1 AT1G08420 45.000 320 157 6 7 307 655 974 1.14e-76 253
MS.gene23125.t1 AT1G08420 45.000 320 157 6 7 307 660 979 1.18e-76 253
MS.gene23125.t1 AT1G03445 40.356 337 174 9 4 315 451 785 1.64e-76 249
MS.gene23125.t1 AT2G42500 50.455 220 107 2 81 299 33 251 2.57e-76 234
MS.gene23125.t1 AT1G03445 41.956 317 166 8 4 304 451 765 3.91e-76 248
MS.gene23125.t1 AT2G42810 42.160 287 155 6 1 281 167 448 2.20e-69 224
MS.gene23125.t1 AT2G42810 42.160 287 155 6 1 281 167 448 2.20e-69 224
MS.gene23125.t1 AT2G42810 42.160 287 155 6 1 281 167 448 2.20e-69 224
MS.gene23125.t1 AT2G42810 42.160 287 155 6 1 281 220 501 6.73e-69 224
MS.gene23125.t1 AT2G42810 42.160 287 155 6 1 281 221 502 7.41e-69 224
MS.gene23125.t1 AT2G42500 45.882 170 82 4 6 170 9 173 3.62e-46 154
MS.gene23125.t1 AT2G42500 45.763 177 84 5 6 177 9 178 4.65e-46 154
MS.gene23125.t1 AT2G42500 47.531 162 75 4 6 162 9 165 3.16e-45 152
MS.gene23125.t1 AT5G63870 32.581 310 148 9 51 299 73 382 2.44e-37 138
MS.gene23125.t1 AT5G63870 32.581 310 148 9 51 299 73 382 2.44e-37 138
MS.gene23125.t1 AT5G63870 34.513 226 113 5 51 241 73 298 2.97e-31 119
MS.gene23125.t1 AT1G48120 30.537 298 143 8 35 270 630 925 1.34e-26 110
MS.gene23125.t1 AT5G10900 30.153 262 141 11 57 279 225 483 6.32e-21 93.6
MS.gene23125.t1 AT5G10900 30.153 262 141 11 57 279 225 483 7.09e-21 93.6
MS.gene23125.t1 AT5G10900 30.153 262 141 11 57 279 225 483 8.11e-21 93.2

Find 71 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCCCCGCCATAATT+TGG 0.189229 7.2:+4179495 None:intergenic
AAACCTGCTGATAAAGAATT+TGG 0.231736 7.2:-4179414 MS.gene23125:CDS
CGAGGTGTTTCGTGTACTTT+TGG 0.244051 7.2:-4180327 MS.gene23125:CDS
GCTGCAAATTACTTGTTTCT+TGG 0.257569 7.2:-4180738 MS.gene23125:CDS
ATATTCTCTGCCCCAAATTA+TGG 0.268724 7.2:-4179507 MS.gene23125:CDS
CAAATTCCCCGCCATAATTT+GGG 0.269829 7.2:+4179496 None:intergenic
GGTTTATCTTTGCATCTTCA+TGG 0.299589 7.2:+4180616 None:intergenic
GGAGACTATATGCTTGCTTT+TGG 0.332948 7.2:-4180685 MS.gene23125:CDS
ATGATCTTGATCTTATTTGC+AGG 0.336140 7.2:-4180272 MS.gene23125:CDS
GTCTCTTGTGCGATCTGCTT+TGG 0.337128 7.2:-4180392 MS.gene23125:CDS
GAGACCGCTGTCTGGAATTT+CGG 0.338263 7.2:+4180410 None:intergenic
GCAAAGATAAACCGAATATA+TGG 0.352537 7.2:-4180606 MS.gene23125:CDS
GATAGAGTTTATCTCTTAAG+AGG 0.369598 7.2:-4180642 MS.gene23125:CDS
AGACAGAGGGAAGCAAAGTT+TGG 0.370499 7.2:-4180706 MS.gene23125:CDS
CAACCCTCAGCGTTAGGATC+AGG 0.386986 7.2:+4180363 None:intergenic
CGATTGCTTTAACTGTTTGC+CGG 0.396470 7.2:-4180529 MS.gene23125:CDS
AAGAAGATTGTTAGAAGGAA+AGG 0.405161 7.2:-4181788 MS.gene23125:CDS
TGATCCTAACGCTGAGGGTT+GGG 0.410803 7.2:-4180361 MS.gene23125:CDS
TCTTATTTGCAGGGGTCATC+AGG 0.413370 7.2:-4180262 MS.gene23125:intron
GTAAAAGGAGGTTCAATGTT+AGG 0.413611 7.2:-4180569 MS.gene23125:CDS
TTCTTATAGGTTGTGGAGGA+TGG 0.418589 7.2:-4179564 MS.gene23125:intron
GGCCTACAAAATAAGATATC+CGG 0.419399 7.2:-4180664 MS.gene23125:CDS
AACGACAATGGAAGGAGAAA+TGG 0.424864 7.2:-4181836 None:intergenic
GTGATAAGAAGATTGTTAGA+AGG 0.438726 7.2:-4181793 MS.gene23125:CDS
CTTCCAAATTCTTTATCAGC+AGG 0.440807 7.2:+4179411 None:intergenic
CGTGCTCCCATCCGCATTTG+CGG 0.444802 7.2:-4181670 MS.gene23125:intron
CTTAAGAGATAAACTCTATC+CGG 0.451063 7.2:+4180645 None:intergenic
GACTAGATCTATCCCTGTGC+AGG 0.453447 7.2:+4179261 None:intergenic
CTGCATGCAGGTGATATTCA+TGG 0.458163 7.2:-4180810 MS.gene23125:intron
TCGCACAAGAGACCGCTGTC+TGG 0.467988 7.2:+4180402 None:intergenic
TCTGCCCAACCCTCAGCGTT+AGG 0.475726 7.2:+4180357 None:intergenic
GCACGAAGATCGAGAAGAAT+AGG 0.484459 7.2:+4181688 None:intergenic
CGAGAAGAATAGGTTGAGAG+AGG 0.490202 7.2:+4181698 None:intergenic
AGAAGATTGTTAGAAGGAAA+GGG 0.491790 7.2:-4181787 MS.gene23125:CDS
GGAGGTTCAATGTTAGGCTA+TGG 0.496598 7.2:-4180563 MS.gene23125:CDS
CGGCAAACAGTTAAAGCAAT+CGG 0.514394 7.2:+4180530 None:intergenic
TGATCTTGATCTTATTTGCA+GGG 0.521526 7.2:-4180271 MS.gene23125:CDS
GGAAGGAGAAATGGACAAAA+CGG 0.528497 7.2:-4181827 MS.gene23125:CDS
TACTAACCGCAAATGCGGAT+GGG 0.543656 7.2:+4181664 None:intergenic
CTGATCCTAACGCTGAGGGT+TGG 0.544593 7.2:-4180362 MS.gene23125:CDS
AGAAACAAGTAATTTGCAGC+TGG 0.546090 7.2:+4180741 None:intergenic
GGCATAGGAACGACAATGGA+AGG 0.548710 7.2:-4181844 None:intergenic
TAGATCTATCCCTGTGCAGG+GGG 0.550107 7.2:+4179264 None:intergenic
TCTCTGCCCCAAATTATGGC+GGG 0.558401 7.2:-4179503 MS.gene23125:CDS
AACCCTCAGCGTTAGGATCA+GGG 0.560456 7.2:+4180364 None:intergenic
GACCCTGATCCTAACGCTGA+GGG 0.563933 7.2:-4180366 MS.gene23125:CDS
AACAAGTAATTTGCAGCTGG+AGG 0.567978 7.2:+4180744 None:intergenic
CCGCTGTCTGGAATTTCGGT+AGG 0.569213 7.2:+4180414 None:intergenic
TCATCAATGAGTGCAGCTAC+CGG 0.570663 7.2:+4180510 None:intergenic
GAGAAAATACTTTGTATGCA+TGG 0.574695 7.2:-4180489 MS.gene23125:CDS
TTGGTGATTATGTAGACAGA+GGG 0.580074 7.2:-4180719 MS.gene23125:CDS
ACTAGATCTATCCCTGTGCA+GGG 0.580786 7.2:+4179262 None:intergenic
CTCTGCCCCAAATTATGGCG+GGG 0.582113 7.2:-4179502 MS.gene23125:CDS
GTACTAACCGCAAATGCGGA+TGG 0.584337 7.2:+4181663 None:intergenic
TTTATGATGAATGTAAAAGG+AGG 0.586309 7.2:-4180581 MS.gene23125:CDS
GGCGGGGAATTTGACAACGC+TGG 0.591736 7.2:-4179486 MS.gene23125:CDS
AGATTGTTAGAAGGAAAGGG+AGG 0.602378 7.2:-4181784 MS.gene23125:CDS
TTCTCTGCCCCAAATTATGG+CGG 0.611120 7.2:-4179504 MS.gene23125:CDS
ACAAGTAATTTGCAGCTGGA+GGG 0.614880 7.2:+4180745 None:intergenic
CTTGGTGATTATGTAGACAG+AGG 0.622438 7.2:-4180720 MS.gene23125:CDS
ATCAGATAAGAGAGGTTACG+AGG 0.624724 7.2:-4180437 MS.gene23125:CDS
AAAAGTACTAACCGCAAATG+CGG 0.624956 7.2:+4181659 None:intergenic
AAATTCCCCGCCATAATTTG+GGG 0.631186 7.2:+4179497 None:intergenic
TGACCCTGATCCTAACGCTG+AGG 0.633433 7.2:-4180367 MS.gene23125:CDS
GATCTTGATCTTATTTGCAG+GGG 0.650810 7.2:-4180270 MS.gene23125:CDS
CTAGATCTATCCCTGTGCAG+GGG 0.653548 7.2:+4179263 None:intergenic
CAAAAGTACACGAAACACCT+CGG 0.655383 7.2:+4180328 None:intergenic
AAATTTAGATCAGATAAGAG+AGG 0.664730 7.2:-4180445 MS.gene23125:CDS
GGTTGGGCAGATAGTGACCG+AGG 0.706364 7.2:-4180345 MS.gene23125:CDS
AAAATACTTTGTATGCATGG+AGG 0.710478 7.2:-4180486 MS.gene23125:CDS
CCTACCGAAATTCCAGACAG+CGG 0.761713 7.2:-4180414 MS.gene23125:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTTACTAAAAGT+TGG - chr7.2:4180011-4180030 MS.gene23125:intron 10.0%
!!! CTATTTTTCAAAAATATATA+CGG - chr7.2:4179568-4179587 MS.gene23125:intron 10.0%
!! ATTATTCAGTTTCTATTAAA+TGG + chr7.2:4180192-4180211 None:intergenic 15.0%
!! CTCAAAAAAAAAAAAAAAGT+TGG - chr7.2:4180045-4180064 MS.gene23125:intron 15.0%
!!! ATCAAAAATGAATTTTAAGA+AGG - chr7.2:4181716-4181735 MS.gene23125:CDS 15.0%
!!! GTTTTTACAATTAAGAATAT+TGG - chr7.2:4179680-4179699 MS.gene23125:intron 15.0%
!! AAAATATTTAGGAATGAAAC+TGG - chr7.2:4181076-4181095 MS.gene23125:intron 20.0%
!! AGATAAGAAAGTCAATATAT+TGG + chr7.2:4181381-4181400 None:intergenic 20.0%
!! ATATCAACGAATTTCAAAAT+GGG + chr7.2:4181003-4181022 None:intergenic 20.0%
!! CATCATAAAAACCATATATT+CGG + chr7.2:4180506-4180525 None:intergenic 20.0%
!! TAAAACCTATATCAAACATA+TGG - chr7.2:4179977-4179996 MS.gene23125:intron 20.0%
!! TATATCAACGAATTTCAAAA+TGG + chr7.2:4181004-4181023 None:intergenic 20.0%
!! TTAAGAATATTGGTCATTTA+AGG - chr7.2:4179690-4179709 MS.gene23125:intron 20.0%
!! TTTAATTCATGATAGATGAA+GGG + chr7.2:4180098-4180117 None:intergenic 20.0%
!!! AAAAGTAACTAGATGAATTT+TGG + chr7.2:4180923-4180942 None:intergenic 20.0%
!!! ATGAATTTTGGAAATTATGA+AGG + chr7.2:4180911-4180930 None:intergenic 20.0%
!!! CATAGTCTTGTATATATATT+TGG - chr7.2:4181770-4181789 MS.gene23125:CDS 20.0%
!!! GTGCAATTTTTTTTTCTTAT+AGG - chr7.2:4181521-4181540 MS.gene23125:intron 20.0%
!!! GTTTTTATGATGAATGTAAA+AGG - chr7.2:4180514-4180533 MS.gene23125:CDS 20.0%
!!! TGATCTAAATTTTGTAATTC+AGG + chr7.2:4180645-4180664 None:intergenic 20.0%
!!! TTATTGAGACTTTTTGAATA+TGG - chr7.2:4180324-4180343 MS.gene23125:CDS 20.0%
!!! TTTTAAAATATTGCAGATAG+AGG + chr7.2:4180144-4180163 None:intergenic 20.0%
!!! TTTTAATTCATGATAGATGA+AGG + chr7.2:4180099-4180118 None:intergenic 20.0%
!!! TTTTTTTTTCTTATAGGTTG+TGG - chr7.2:4181527-4181546 MS.gene23125:intron 20.0%
!!! TTTTTTTTTTTGAGCAATAC+AGG + chr7.2:4180039-4180058 None:intergenic 20.0%
! AAAATATATCACGAAAACCA+AGG - chr7.2:4179770-4179789 MS.gene23125:intron 25.0%
! AAATTTAGATCAGATAAGAG+AGG - chr7.2:4180653-4180672 MS.gene23125:CDS 25.0%
! TAATTTAATGACCGTGATAA+AGG + chr7.2:4181053-4181072 None:intergenic 25.0%
! TCAAAAATATATACGGAGTT+TGG - chr7.2:4179575-4179594 MS.gene23125:intron 25.0%
! TTGAGAATTGTGGTTAAATA+TGG - chr7.2:4179886-4179905 MS.gene23125:intron 25.0%
! TTTATGATGAATGTAAAAGG+AGG - chr7.2:4180517-4180536 MS.gene23125:CDS 25.0%
!! GTAAATTTTGTTGAGAATTG+TGG - chr7.2:4179876-4179895 MS.gene23125:intron 25.0%
!! TTTCTCTCTCTTTCAAATTT+TGG - chr7.2:4179474-4179493 MS.gene23125:CDS 25.0%
AAAATACTTTGTATGCATGG+AGG - chr7.2:4180612-4180631 MS.gene23125:CDS 30.0%
AAACCTGCTGATAAAGAATT+TGG - chr7.2:4181684-4181703 MS.gene23125:CDS 30.0%
AAGAAGATTGTTAGAAGGAA+AGG - chr7.2:4179310-4179329 MS.gene23125:intron 30.0%
AGAAGATTGTTAGAAGGAAA+GGG - chr7.2:4179311-4179330 MS.gene23125:intron 30.0%
ATGAAACTGGAACAATTAAG+TGG - chr7.2:4181089-4181108 MS.gene23125:intron 30.0%
ATTCGTTGATATACAGTTTG+TGG - chr7.2:4181011-4181030 MS.gene23125:intron 30.0%
CAAAAAGTCTCAATAAGTCT+TGG + chr7.2:4180320-4180339 None:intergenic 30.0%
CATCAGGAACAACAAAAAAT+AGG + chr7.2:4180254-4180273 None:intergenic 30.0%
CTTAAGAGATAAACTCTATC+CGG + chr7.2:4180456-4180475 None:intergenic 30.0%
GAGAAAATACTTTGTATGCA+TGG - chr7.2:4180609-4180628 MS.gene23125:CDS 30.0%
GATAGAGTTTATCTCTTAAG+AGG - chr7.2:4180456-4180475 MS.gene23125:CDS 30.0%
GCAAAGATAAACCGAATATA+TGG - chr7.2:4180492-4180511 MS.gene23125:CDS 30.0%
GTGATAAGAAGATTGTTAGA+AGG - chr7.2:4179305-4179324 MS.gene23125:intron 30.0%
TCTTGCCATATGTTTGATAT+AGG + chr7.2:4179985-4180004 None:intergenic 30.0%
TGAAACTGGAACAATTAAGT+GGG - chr7.2:4181090-4181109 MS.gene23125:intron 30.0%
TGAAAGAGAGAGAAAACAAA+AGG + chr7.2:4179469-4179488 None:intergenic 30.0%
TTATCATTATGCTCGTATGA+AGG + chr7.2:4180872-4180891 None:intergenic 30.0%
! ATGATCTTGATCTTATTTGC+AGG - chr7.2:4180826-4180845 MS.gene23125:intron 30.0%
! TGATCTTGATCTTATTTGCA+GGG - chr7.2:4180827-4180846 MS.gene23125:intron 30.0%
! TTGAGACTTTTTGAATATGG+TGG - chr7.2:4180327-4180346 MS.gene23125:CDS 30.0%
!!! ATCCGGATATCTTATTTTGT+AGG + chr7.2:4180439-4180458 None:intergenic 30.0%
!!! TTTTTTCTTATAGGTTGTGG+AGG - chr7.2:4181530-4181549 MS.gene23125:intron 30.0%
AAAGATTGCATGGTAACTTG+GGG - chr7.2:4181181-4181200 MS.gene23125:intron 35.0%
ACATCAAATTACATGGGAAC+TGG - chr7.2:4179809-4179828 MS.gene23125:intron 35.0%
ATATTCTCTGCCCCAAATTA+TGG - chr7.2:4181591-4181610 MS.gene23125:intron 35.0%
CGTCGAACATCAAATTACAT+GGG - chr7.2:4179803-4179822 MS.gene23125:intron 35.0%
CTTCCAAATTCTTTATCAGC+AGG + chr7.2:4181690-4181709 None:intergenic 35.0%
GAAAGATTGCATGGTAACTT+GGG - chr7.2:4181180-4181199 MS.gene23125:intron 35.0%
GGAACAACAAAAAATAGGTG+TGG + chr7.2:4180249-4180268 None:intergenic 35.0%
GGCCTACAAAATAAGATATC+CGG - chr7.2:4180434-4180453 MS.gene23125:CDS 35.0%
GGTTTATCTTTGCATCTTCA+TGG + chr7.2:4180485-4180504 None:intergenic 35.0%
GTAAAAGGAGGTTCAATGTT+AGG - chr7.2:4180529-4180548 MS.gene23125:CDS 35.0%
TACCATGCAATCTTTCCTAA+CGG + chr7.2:4181176-4181195 None:intergenic 35.0%
TCGTCGAACATCAAATTACA+TGG - chr7.2:4179802-4179821 MS.gene23125:intron 35.0%
TGACATTGCTACCATAATCA+AGG - chr7.2:4179939-4179958 MS.gene23125:intron 35.0%
TGAGACCTTAATCAGAAGTT+GGG + chr7.2:4181492-4181511 None:intergenic 35.0%
! AGAAACAAGTAATTTGCAGC+TGG + chr7.2:4180360-4180379 None:intergenic 35.0%
! GAAGCAATCTAAAGTAGACT+TGG - chr7.2:4181131-4181150 MS.gene23125:intron 35.0%
! GATCTTGATCTTATTTGCAG+GGG - chr7.2:4180828-4180847 MS.gene23125:intron 35.0%
! GCTGCAAATTACTTGTTTCT+TGG - chr7.2:4180360-4180379 MS.gene23125:CDS 35.0%
! TTGGTGATTATGTAGACAGA+GGG - chr7.2:4180379-4180398 MS.gene23125:CDS 35.0%
!! AAAAGTACTAACCGCAAATG+CGG + chr7.2:4179442-4179461 None:intergenic 35.0%
!!! AAGCAAGTTTTTTTCCCGTT+AGG - chr7.2:4181158-4181177 MS.gene23125:intron 35.0%
!!! TGATGTTGTCGCAGATTTTT+TGG - chr7.2:4180797-4180816 MS.gene23125:CDS 35.0%
AAATTCCCCGCCATAATTTG+GGG + chr7.2:4181604-4181623 None:intergenic 40.0%
ACCATAATCAAGGTTGTGGA+CGG - chr7.2:4179949-4179968 MS.gene23125:intron 40.0%
ACCATGCAATCTTTCCTAAC+GGG + chr7.2:4181175-4181194 None:intergenic 40.0%
AGATTGTTAGAAGGAAAGGG+AGG - chr7.2:4179314-4179333 MS.gene23125:intron 40.0%
ATCAGATAAGAGAGGTTACG+AGG - chr7.2:4180661-4180680 MS.gene23125:CDS 40.0%
CAAATTACATGGGAACTGGA+GGG - chr7.2:4179813-4179832 MS.gene23125:intron 40.0%
CAAATTCCCCGCCATAATTT+GGG + chr7.2:4181605-4181624 None:intergenic 40.0%
CGATTGCTTTAACTGTTTGC+CGG - chr7.2:4180569-4180588 MS.gene23125:CDS 40.0%
CGGCAAACAGTTAAAGCAAT+CGG + chr7.2:4180571-4180590 None:intergenic 40.0%
GAATTGCATAGTGCAACTAC+AGG + chr7.2:4180073-4180092 None:intergenic 40.0%
GAGACCTTAATCAGAAGTTG+GGG + chr7.2:4181491-4181510 None:intergenic 40.0%
GCTAGTGTATAATTCGACTC+TGG + chr7.2:4181429-4181448 None:intergenic 40.0%
GGAAAGATTGCATGGTAACT+TGG - chr7.2:4181179-4181198 MS.gene23125:intron 40.0%
GGAAGGAGAAATGGACAAAA+CGG - chr7.2:4179271-4179290 MS.gene23125:intron 40.0%
GTGAGACCTTAATCAGAAGT+TGG + chr7.2:4181493-4181512 None:intergenic 40.0%
TAAGACCAAAGGAGATGTGT+CGG - chr7.2:4179837-4179856 MS.gene23125:intron 40.0%
TACAATGTGAGTGATGCAAG+AGG + chr7.2:4181248-4181267 None:intergenic 40.0%
TCAAATTACATGGGAACTGG+AGG - chr7.2:4179812-4179831 MS.gene23125:intron 40.0%
TCAAATTCCCCGCCATAATT+TGG + chr7.2:4181606-4181625 None:intergenic 40.0%
TGCTACCATAATCAAGGTTG+TGG - chr7.2:4179945-4179964 MS.gene23125:intron 40.0%
TTATGCTCGTATGAAGGAAG+AGG + chr7.2:4180866-4180885 None:intergenic 40.0%
TTCGACGAAGAGATAAACCT+TGG + chr7.2:4179790-4179809 None:intergenic 40.0%
TTCTTATAGGTTGTGGAGGA+TGG - chr7.2:4181534-4181553 MS.gene23125:intron 40.0%
TTTGCCCCAACTTCTGATTA+AGG - chr7.2:4181484-4181503 MS.gene23125:intron 40.0%
! AACAAGTAATTTGCAGCTGG+AGG + chr7.2:4180357-4180376 None:intergenic 40.0%
! ACAAGTAATTTGCAGCTGGA+GGG + chr7.2:4180356-4180375 None:intergenic 40.0%
! CAAAAGTACACGAAACACCT+CGG + chr7.2:4180773-4180792 None:intergenic 40.0%
! CTTGGTGATTATGTAGACAG+AGG - chr7.2:4180378-4180397 MS.gene23125:CDS 40.0%
! GGAGACTATATGCTTGCTTT+TGG - chr7.2:4180413-4180432 MS.gene23125:CDS 40.0%
! TGATAGCGCAACCTTTATCA+CGG - chr7.2:4181039-4181058 MS.gene23125:intron 40.0%
!!! TTTTGTTGTTCCTGATGTCG+TGG - chr7.2:4180257-4180276 MS.gene23125:intron 40.0%
AACTGGAGGGATAAGACCAA+AGG - chr7.2:4179826-4179845 MS.gene23125:intron 45.0%
ACCGTCCACAACCTTGATTA+TGG + chr7.2:4179953-4179972 None:intergenic 45.0%
AGACAGAGGGAAGCAAAGTT+TGG - chr7.2:4180392-4180411 MS.gene23125:CDS 45.0%
AGCAAAAGAACCACGACATC+AGG + chr7.2:4180270-4180289 None:intergenic 45.0%
CTGCATGCAGGTGATATTCA+TGG - chr7.2:4180288-4180307 MS.gene23125:CDS 45.0%
GCACGAAGATCGAGAAGAAT+AGG + chr7.2:4179413-4179432 None:intergenic 45.0%
GGAGGTTCAATGTTAGGCTA+TGG - chr7.2:4180535-4180554 MS.gene23125:CDS 45.0%
GTGTATAATTCGACTCTGGC+TGG + chr7.2:4181425-4181444 None:intergenic 45.0%
TACTAACCGCAAATGCGGAT+GGG + chr7.2:4179437-4179456 None:intergenic 45.0%
TCATCAATGAGTGCAGCTAC+CGG + chr7.2:4180591-4180610 None:intergenic 45.0%
TCCCGTTAGGAAAGATTGCA+TGG - chr7.2:4181171-4181190 MS.gene23125:intron 45.0%
TCTCGCGTTGCAAGCAATAT+GGG + chr7.2:4181329-4181348 None:intergenic 45.0%
TTCTCTGCCCCAAATTATGG+CGG - chr7.2:4181594-4181613 MS.gene23125:intron 45.0%
! CGAGAAGAATAGGTTGAGAG+AGG + chr7.2:4179403-4179422 None:intergenic 45.0%
! TAACTTGGGGCTTCGATTTG+CGG - chr7.2:4181194-4181213 MS.gene23125:intron 45.0%
! TCTTATTTGCAGGGGTCATC+AGG - chr7.2:4180836-4180855 MS.gene23125:intron 45.0%
!! CGAGGTGTTTCGTGTACTTT+TGG - chr7.2:4180771-4180790 MS.gene23125:CDS 45.0%
!! TTAAATTAATGAAAATATTT+AGG - chr7.2:4181065-4181084 MS.gene23125:intron 5.0%
AACCCTCAGCGTTAGGATCA+GGG + chr7.2:4180737-4180756 None:intergenic 50.0%
CCTACCGAAATTCCAGACAG+CGG - chr7.2:4180684-4180703 MS.gene23125:CDS 50.0%
GTACTAACCGCAAATGCGGA+TGG + chr7.2:4179438-4179457 None:intergenic 50.0%
GTCTCGCGTTGCAAGCAATA+TGG + chr7.2:4181330-4181349 None:intergenic 50.0%
GTCTCTTGTGCGATCTGCTT+TGG - chr7.2:4180706-4180725 MS.gene23125:CDS 50.0%
TCTCTGCCCCAAATTATGGC+GGG - chr7.2:4181595-4181614 MS.gene23125:intron 50.0%
TGATCCTAACGCTGAGGGTT+GGG - chr7.2:4180737-4180756 MS.gene23125:CDS 50.0%
! GAGACCGCTGTCTGGAATTT+CGG + chr7.2:4180691-4180710 None:intergenic 50.0%
! GTGGTTCTTTTGCTGCATGC+AGG - chr7.2:4180276-4180295 MS.gene23125:CDS 50.0%
CAACCCTCAGCGTTAGGATC+AGG + chr7.2:4180738-4180757 None:intergenic 55.0%
CTCTGCCCCAAATTATGGCG+GGG - chr7.2:4181596-4181615 MS.gene23125:intron 55.0%
CTGATCCTAACGCTGAGGGT+TGG - chr7.2:4180736-4180755 MS.gene23125:CDS 55.0%
GACCCTGATCCTAACGCTGA+GGG - chr7.2:4180732-4180751 MS.gene23125:CDS 55.0%
GAGAGCCGACACATCTCCTT+TGG + chr7.2:4179845-4179864 None:intergenic 55.0%
TGACCCTGATCCTAACGCTG+AGG - chr7.2:4180731-4180750 MS.gene23125:CDS 55.0%
! CCGCTGTCTGGAATTTCGGT+AGG + chr7.2:4180687-4180706 None:intergenic 55.0%
CGTGCTCCCATCCGCATTTG+CGG - chr7.2:4179428-4179447 MS.gene23125:CDS 60.0%
GGCGGGGAATTTGACAACGC+TGG - chr7.2:4181612-4181631 MS.gene23125:intron 60.0%
GGTTGGGCAGATAGTGACCG+AGG - chr7.2:4180753-4180772 MS.gene23125:CDS 60.0%
TCGCACAAGAGACCGCTGTC+TGG + chr7.2:4180699-4180718 None:intergenic 60.0%
TCTGCCCAACCCTCAGCGTT+AGG + chr7.2:4180744-4180763 None:intergenic 60.0%
TTTCTGCAGCCCCCTGCACA+GGG - chr7.2:4181825-4181844 MS.gene23125:CDS 60.0%
! CTTGGGGCTTCGATTTGCGG+AGG - chr7.2:4181197-4181216 MS.gene23125:intron 60.0%
! TTTTCTGCAGCCCCCTGCAC+AGG - chr7.2:4181824-4181843 MS.gene23125:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4179269 4181851 4179269 ID=MS.gene23125
chr7.2 mRNA 4179269 4181851 4179269 ID=MS.gene23125.t1;Parent=MS.gene23125
chr7.2 exon 4181671 4181851 4181671 ID=MS.gene23125.t1.exon1;Parent=MS.gene23125.t1
chr7.2 CDS 4181671 4181851 4181671 ID=cds.MS.gene23125.t1;Parent=MS.gene23125.t1
chr7.2 exon 4180263 4180822 4180263 ID=MS.gene23125.t1.exon2;Parent=MS.gene23125.t1
chr7.2 CDS 4180263 4180822 4180263 ID=cds.MS.gene23125.t1;Parent=MS.gene23125.t1
chr7.2 exon 4179383 4179577 4179383 ID=MS.gene23125.t1.exon3;Parent=MS.gene23125.t1
chr7.2 CDS 4179383 4179577 4179383 ID=cds.MS.gene23125.t1;Parent=MS.gene23125.t1
chr7.2 exon 4179269 4179286 4179269 ID=MS.gene23125.t1.exon4;Parent=MS.gene23125.t1
chr7.2 CDS 4179269 4179286 4179269 ID=cds.MS.gene23125.t1;Parent=MS.gene23125.t1
Gene Sequence

>MS.gene23125

ATGGAAGGAGAAATGGACAAAACGGTGCTAGATGATGTGATAAGAAGATTGTTAGAAGGAAAGGGAGGAAAACAAGTACAACTTTCTGAATCTGAGATTCGTCAACTTTGCATCAATGCAAGACAAATCTTCCTCTCTCAACCTATTCTTCTCGATCTTCGTGCTCCCATCCGCATTTGCGGTTAGTACTTTTATCTCCTTTTGTTTTCTCTCTCTTTCAAATTTTGGAGATGTATGTTTTTTCTTATCAATCTATTGAATCTCATAAATTATTCATTCTCGCTTCTTTTGTTAACAAACTATTTTTCAAAAATATATACGGAGTTTGGAGATGAAGAAATTATTGTTTTTTTTTTTTTTTGCATAAGATGATGAAAGATTAATTAGAAGTTATTAAAAATGAAAACTAATGTTTTTACAATTAAGAATATTGGTCATTTAAGGAAGACAATAACAACTTTGATACATGTTTTGTTAATTTAATGAAATATATGAAATATTAAAATATATCACGAAAACCAAGGTTTATCTCTTCGTCGAACATCAAATTACATGGGAACTGGAGGGATAAGACCAAAGGAGATGTGTCGGCTCTCAAGTTGAGATCGTAAATTTTGTTGAGAATTGTGGTTAAATATGGTTGACGTAGATCATGCAATCACAATGTTGTTGACATTGCTACCATAATCAAGGTTGTGGACGGTTTTTTAAAACCTATATCAAACATATGGCAAGAAAATGAAATATATATTTACTAAAAGTTGGTTCCTGTATTGCTCAAAAAAAAAAAAAAAGTTGGTTCCTGTAGTTGCACTATGCAATTCTTCCCTTCATCTATCATGAATTAAAATTTGACGCATTTGCATTCTTTTCCTCTATCTGCAATATTTTAAAAGAAAACAATCTTATATATCTGCATGCCATTTAATAGAAACTGAATAATGTAATTTGCATTTTAAAGTTTATCAATGACATTGCCACACCTATTTTTTGTTGTTCCTGATGTCGTGGTTCTTTTGCTGCATGCAGGTGATATTCATGGTCAATACCAAGACTTATTGAGACTTTTTGAATATGGTGGCTACCCTCCAGCTGCAAATTACTTGTTTCTTGGTGATTATGTAGACAGAGGGAAGCAAAGTTTGGAGACTATATGCTTGCTTTTGGCCTACAAAATAAGATATCCGGATAGAGTTTATCTCTTAAGAGGAAACCATGAAGATGCAAAGATAAACCGAATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTCACCGATTGCTTTAACTGTTTGCCGGTAGCTGCACTCATTGATGAGAAAATACTTTGTATGCATGGAGGACTTTCTCCTGAATTACAAAATTTAGATCAGATAAGAGAGGTTACGAGGCCTACCGAAATTCCAGACAGCGGTCTCTTGTGCGATCTGCTTTGGTCTGACCCTGATCCTAACGCTGAGGGTTGGGCAGATAGTGACCGAGGTGTTTCGTGTACTTTTGGATCTGATGTTGTCGCAGATTTTTTGGATAAAAATGATCTTGATCTTATTTGCAGGGGTCATCAGGTAAACCTCTTCCTTCATACGAGCATAATGATAAAATCGATACATGTTTTCCTTCATAATTTCCAAAATTCATCTAGTTACTTTTTAACTAAAAAAGCTAGTTAAAAAAGTTACAAGATTCTAGTCATTTTAATTATTAATACCCATTTTGAAATTCGTTGATATACAGTTTGTGGACTTCTGATAGCGCAACCTTTATCACGGTCATTAAATTAATGAAAATATTTAGGAATGAAACTGGAACAATTAAGTGGGTGTTTGTGTTAAAATTAAGAAGCAATCTAAAGTAGACTTGGTCAAAAGCAAGTTTTTTTCCCGTTAGGAAAGATTGCATGGTAACTTGGGGCTTCGATTTGCGGAGGTGTAAACTGATACACACGTGAACAACCTCTTGCATCACTCACATTGTATGTTATGTTTCACATCAATTCTTTCACAATACATTTCTCGCATTCTATGTATTTCTTTCCCATATTGCTTGCAACGCGAGACTTCATTGATTTATTTTTAGTTGATGTAACCAATATATTGACTTTCTTATCTAACATGCATATCATGTCAAGACCAGCCAGAGTCGAATTATACACTAGCATTCATTCAATTTTTTTCATTCGATTTTATGTTACTTTGCCCCAACTTCTGATTAAGGTCTCACTTTACTCTGTGCAATTTTTTTTTCTTATAGGTTGTGGAGGATGGATATGAGTTTTTCGCTAAAAGAAGATTAGTTACGATATTCTCTGCCCCAAATTATGGCGGGGAATTTGACAACGCTGGTGCGTTATTGAGCGTTGATGAATCTCTTGTATGTTCGTTTGAGATACTGAAACCTGCTGATAAAGAATTTGGAAGTAGTTCATCAAAAATGAATTTTAAGAAGGTAAATTTCAACTATCAATTGTCTGAATTTCTCATAGTCTTGTATATATATTTGGATGTTTGTGTATATAAATATGTTGTTTAACTTTTTCTGCAGCCCCCTGCACAGGGATAG
Protein sequence

>MS.gene23125.t1

MEGEMDKTVLDDVIRRLLEGKGGKQVQLSESEIRQLCINARQIFLSQPILLDLRAPIRICGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDRVYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELQNLDQIREVTRPTEIPDSGLLCDLLWSDPDPNAEGWADSDRGVSCTFGSDVVADFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPADKEFGSSSSKMNFKKPPAQG