AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49664


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49664.t1 MTR_5g037200 100.000 306 0 0 1 306 1 306 0.0 642
MS.gene49664.t1 MTR_8g062430 97.386 306 8 0 1 306 1 306 0.0 626
MS.gene49664.t1 MTR_8g085610 80.263 304 60 0 3 306 5 308 0.0 534
MS.gene49664.t1 MTR_7g107310 79.070 301 63 0 6 306 13 313 0.0 522
MS.gene49664.t1 MTR_8g085610 81.915 282 51 0 25 306 3 284 0.0 504
MS.gene49664.t1 MTR_5g093990 66.118 304 101 2 5 306 2 305 1.54e-152 429
MS.gene49664.t1 MTR_5g037200 100.000 186 0 0 1 186 1 186 2.15e-136 385
MS.gene49664.t1 MTR_1g039380 55.960 302 132 1 6 306 2 303 8.03e-128 367
MS.gene49664.t1 MTR_1g039380 58.484 277 114 1 31 306 3 279 2.54e-123 354
MS.gene49664.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 2.96e-95 285
MS.gene49664.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 3.16e-95 285
MS.gene49664.t1 MTR_1g079950 45.819 299 153 3 4 294 3 300 3.48e-95 285
MS.gene49664.t1 MTR_7g112870 46.154 299 154 3 7 299 10 307 4.64e-95 284
MS.gene49664.t1 MTR_1g079950 45.819 299 153 3 4 294 32 329 5.54e-95 285
MS.gene49664.t1 MTR_5g081230 46.102 295 152 3 6 294 24 317 3.99e-94 281
MS.gene49664.t1 MTR_7g116380 47.826 276 142 2 20 294 26 300 5.71e-94 281
MS.gene49664.t1 MTR_7g116380 47.826 276 142 2 20 294 26 300 7.59e-94 281
MS.gene49664.t1 MTR_8g098980 48.679 265 134 2 20 283 27 290 2.02e-93 280
MS.gene49664.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 1.71e-91 275
MS.gene49664.t1 MTR_1g074880 48.175 274 140 2 20 292 26 298 1.82e-91 275
MS.gene49664.t1 MTR_8g005010 44.483 290 152 3 7 288 4 292 1.87e-91 274
MS.gene49664.t1 MTR_1g043240 45.804 286 153 2 20 304 26 310 2.47e-91 275
MS.gene49664.t1 MTR_1g079950 48.617 253 125 3 54 302 34 285 2.38e-83 254
MS.gene49664.t1 MTR_1g074880 50.622 241 117 2 53 292 4 243 1.28e-82 250
MS.gene49664.t1 MTR_1g074880 50.622 241 117 2 53 292 4 243 1.38e-82 250
MS.gene49664.t1 MTR_4g050540 39.792 289 160 5 24 298 673 961 7.60e-60 206
MS.gene49664.t1 MTR_3g452710 42.449 245 135 5 50 290 222 464 1.58e-59 197
MS.gene49664.t1 MTR_2g100130 37.884 293 171 7 7 290 93 383 5.77e-59 194
MS.gene49664.t1 MTR_3g452710 42.449 245 135 5 50 290 289 531 8.36e-59 197
MS.gene49664.t1 MTR_2g087530 39.932 293 155 8 24 298 555 844 3.76e-58 200
MS.gene49664.t1 MTR_2g100130 37.884 293 171 7 7 290 192 482 5.35e-58 194
MS.gene49664.t1 MTR_2g087530 39.932 293 155 8 24 298 668 957 5.83e-58 201
MS.gene49664.t1 MTR_2g100130 37.884 293 171 7 7 290 163 453 6.21e-58 193
MS.gene49664.t1 MTR_2g100130 37.884 293 171 7 7 290 202 492 6.77e-58 194
MS.gene49664.t1 MTR_1g089370 41.825 263 139 5 24 272 552 814 1.55e-57 199
MS.gene49664.t1 MTR_2g100130 37.931 290 169 7 7 287 202 489 1.02e-56 191
MS.gene49664.t1 MTR_2g100130 37.931 290 168 8 7 287 202 488 2.68e-55 187
MS.gene49664.t1 MTR_2g100130 37.931 290 168 8 7 287 163 449 3.68e-55 186
MS.gene49664.t1 MTR_2g100130 44.749 219 115 5 49 263 248 464 2.45e-54 184
MS.gene49664.t1 MTR_2g100160 40.891 247 139 6 49 290 158 402 2.37e-53 180
MS.gene49664.t1 MTR_8g072600 32.414 290 141 10 26 262 107 394 2.08e-31 122
MS.gene49664.t1 MTR_8g072600 33.333 252 120 8 20 225 93 342 1.52e-27 110
MS.gene49664.t1 MTR_2g099710 31.010 287 124 12 25 262 211 472 1.03e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49664.t1 AT1G10430 94.771 306 16 0 1 306 1 306 0.0 617
MS.gene49664.t1 AT1G10430 94.771 306 16 0 1 306 1 306 0.0 617
MS.gene49664.t1 AT1G59830 94.444 306 17 0 1 306 1 306 0.0 612
MS.gene49664.t1 AT1G69960 91.803 305 25 0 2 306 3 307 0.0 599
MS.gene49664.t1 AT2G42500 80.066 301 60 0 6 306 13 313 0.0 526
MS.gene49664.t1 AT3G58500 78.571 308 64 1 1 306 6 313 0.0 525
MS.gene49664.t1 AT1G59830 93.281 253 17 0 1 253 1 253 5.41e-180 497
MS.gene49664.t1 AT5G55260 66.118 304 101 2 5 306 2 305 3.06e-154 434
MS.gene49664.t1 AT4G26720 65.461 304 103 2 5 306 2 305 1.30e-153 432
MS.gene49664.t1 AT2G42500 68.771 301 47 1 6 306 13 266 2.72e-153 430
MS.gene49664.t1 AT5G55260 58.261 345 101 3 5 306 2 346 9.71e-146 414
MS.gene49664.t1 AT3G19980 55.960 302 132 1 6 306 2 303 1.69e-127 366
MS.gene49664.t1 AT1G50370 55.298 302 134 1 6 306 2 303 2.66e-126 363
MS.gene49664.t1 AT2G29400 47.253 273 143 1 20 292 43 314 7.15e-96 286
MS.gene49664.t1 AT2G39840 47.119 295 149 3 6 294 21 314 9.48e-96 286
MS.gene49664.t1 AT5G27840 47.635 296 148 3 1 290 8 302 1.40e-94 283
MS.gene49664.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.24e-94 283
MS.gene49664.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.37e-94 282
MS.gene49664.t1 AT5G27840 47.635 296 148 3 1 290 8 302 2.37e-94 282
MS.gene49664.t1 AT3G05580 47.586 290 145 3 7 290 14 302 2.36e-93 280
MS.gene49664.t1 AT1G64040 49.434 265 132 2 20 283 27 290 3.89e-93 279
MS.gene49664.t1 AT5G43380 46.667 285 143 3 7 283 6 289 3.64e-91 275
MS.gene49664.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene49664.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene49664.t1 AT5G59160 46.350 274 145 2 20 292 36 308 5.35e-91 273
MS.gene49664.t1 AT5G43380 46.667 285 143 3 7 283 6 289 5.58e-91 274
MS.gene49664.t1 AT4G11240 47.547 265 137 2 20 283 27 290 6.46e-91 273
MS.gene49664.t1 AT5G43380 46.667 285 143 3 7 283 6 289 7.04e-91 273
MS.gene49664.t1 AT3G46820 45.620 274 147 2 20 292 36 308 6.13e-89 268
MS.gene49664.t1 AT2G42500 73.214 168 40 2 1 163 6 173 2.94e-84 251
MS.gene49664.t1 AT2G42500 75.625 160 34 2 1 155 6 165 4.92e-83 248
MS.gene49664.t1 AT2G42500 70.857 175 44 3 1 170 6 178 1.20e-82 247
MS.gene49664.t1 AT3G05580 49.187 246 118 3 1 240 8 252 4.42e-80 243
MS.gene49664.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene49664.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene49664.t1 AT2G42810 42.537 268 144 6 31 290 201 466 1.05e-63 209
MS.gene49664.t1 AT2G42810 42.537 268 144 6 31 290 255 520 4.00e-63 208
MS.gene49664.t1 AT2G42810 42.537 268 144 6 31 290 254 519 4.31e-63 208
MS.gene49664.t1 AT4G03080 41.481 270 144 5 24 279 554 823 5.91e-60 205
MS.gene49664.t1 AT1G03445 41.328 271 142 7 24 279 480 748 1.36e-59 203
MS.gene49664.t1 AT1G03445 41.328 271 142 7 24 279 480 748 1.64e-59 203
MS.gene49664.t1 AT2G27210 39.655 290 160 6 24 298 674 963 1.20e-58 202
MS.gene49664.t1 AT2G27210 39.655 290 160 6 24 298 679 968 1.22e-58 202
MS.gene49664.t1 AT1G08420 40.741 270 146 5 24 279 685 954 4.25e-58 201
MS.gene49664.t1 AT1G08420 40.741 270 146 5 24 279 690 959 4.49e-58 201
MS.gene49664.t1 AT5G63870 32.353 306 142 11 49 291 79 382 1.71e-31 122
MS.gene49664.t1 AT5G63870 32.353 306 142 11 49 291 79 382 1.71e-31 122
MS.gene49664.t1 AT5G63870 36.449 214 97 7 49 225 79 290 2.34e-28 111
MS.gene49664.t1 AT1G48120 32.087 321 148 11 32 283 635 954 1.48e-26 110
MS.gene49664.t1 AT5G10900 28.514 249 143 9 20 239 191 433 8.15e-19 87.0
MS.gene49664.t1 AT5G10900 28.514 249 143 9 20 239 191 433 9.24e-19 87.0
MS.gene49664.t1 AT5G10900 28.514 249 143 9 20 239 191 433 9.53e-19 87.0

Find 83 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTAATTATCTCTTTA+TGG 0.113568 5.1:+27854832 MS.gene49664:CDS
CCACATCGGTAGCAGTAATT+TGG 0.207567 5.1:-27858427 None:intergenic
GATGAATGCTTGAGAAAATA+TGG 0.265964 5.1:+27857455 MS.gene49664:CDS
AGTGGAGACTGTTTCACTTT+TGG 0.279854 5.1:+27856735 MS.gene49664:CDS
ATGGCTGCCATTCTGGAAAT+TGG 0.280680 5.1:+27858454 MS.gene49664:CDS
TGGGAATATGGCTGCCATTC+TGG 0.284450 5.1:+27858447 MS.gene49664:CDS
GATACTAATTATCTCTTTAT+GGG 0.296309 5.1:+27854833 MS.gene49664:CDS
CTGCTACCGATGTGGGAATA+TGG 0.319446 5.1:+27858435 MS.gene49664:CDS
TGGAGGTCTCTCACCATCTT+TGG 0.327030 5.1:+27857639 MS.gene49664:CDS
TCTGGAAATTGGAGAGAATA+TGG 0.342558 5.1:+27858465 MS.gene49664:CDS
CATGGAGTGCAAGCCTTTAC+CGG 0.348936 5.1:+27854655 MS.gene49664:CDS
GACTGCCCTCATTGAGAGTC+AGG 0.351563 5.1:+27857529 MS.gene49664:CDS
ACCGGTGAAGTGTCCGGTTA+CGG 0.359368 5.1:+27854742 MS.gene49664:CDS
CCCAGACGATCGTTGTGGTT+GGG 0.364879 5.1:+27858158 MS.gene49664:CDS
GGCTCAATTTGCCTTGGAGC+TGG 0.369766 5.1:-27858511 None:intergenic
CCCCAACCACAACGATCGTC+TGG 0.379839 5.1:-27858159 None:intergenic
GAGATAGAATTACAATTCTC+AGG 0.380189 5.1:+27856779 MS.gene49664:CDS
ACGGTTTGTGGTGATATTCA+TGG 0.413148 5.1:+27854761 MS.gene49664:CDS
CTTACACTTGAGTAATTTGA+CGG 0.424338 5.1:-27856816 None:intergenic
TTCACATCCGCCTCCGGTAA+AGG 0.440700 5.1:-27854668 None:intergenic
ATATCACCACAAACCGTAAC+CGG 0.441931 5.1:-27854755 None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG 0.441934 5.1:+27854749 MS.gene49664:CDS
CCAGACGATCGTTGTGGTTG+GGG 0.450228 5.1:+27858159 MS.gene49664:CDS
AATATGGAAATGCCAATGTC+TGG 0.452706 5.1:+27857471 MS.gene49664:CDS
CGTGGTGCTGGATATACGTT+TGG 0.454119 5.1:+27858192 MS.gene49664:CDS
GGTATATCTCCACGTGGTGC+TGG 0.461540 5.1:+27858180 MS.gene49664:CDS
CGTTCAACCGGTGAAGTGTC+CGG 0.468440 5.1:+27854736 MS.gene49664:CDS
CCGCGCCTTGGATCGCATAC+AGG 0.472606 5.1:+27857678 MS.gene49664:CDS
TGAGGAATGGAACGTTCAAC+CGG 0.483631 5.1:+27854724 MS.gene49664:CDS
GGTGTCTTTCGTGTAGTGTC+AGG 0.485525 5.1:-27858532 None:intergenic
CTCTTTATGGGAGATTATGT+AGG 0.493968 5.1:+27854845 MS.gene49664:CDS
ACCCAGACGATCGTTGTGGT+TGG 0.495708 5.1:+27858157 MS.gene49664:CDS
GTGTCAGGCTCAATTTGCCT+TGG 0.498966 5.1:-27858517 None:intergenic
AGCGCCTTCACATCCGCCTC+CGG 0.505019 5.1:-27854674 None:intergenic
GGGCGATTCTTGTTGAGGAA+TGG 0.507448 5.1:+27854711 MS.gene49664:CDS
GGTAAAGAATTTCCAGACAT+TGG 0.508637 5.1:-27857483 None:intergenic
ATTCTCTCCAATTTCCAGAA+TGG 0.510452 5.1:-27858461 None:intergenic
TCGGATTGGTGGAAATGCTC+CGG 0.512157 5.1:+27854811 MS.gene49664:CDS
TCAATATAGGTTCCGCATGA+AGG 0.513509 5.1:+27858108 MS.gene49664:intron
AGGTAAATAATCAAACAAAT+CGG 0.517054 5.1:-27857504 None:intergenic
ATAAAGAGATAATTAGTATC+CGG 0.517202 5.1:-27854830 None:intergenic
GCTCAGTTCAATCACACAAA+TGG 0.518477 5.1:+27858228 MS.gene49664:CDS
CCAAATTACTGCTACCGATG+TGG 0.523948 5.1:+27858427 MS.gene49664:CDS
ACTGGATAATATCCGCGCCT+TGG 0.529586 5.1:+27857666 MS.gene49664:CDS
CAAATTACTGCTACCGATGT+GGG 0.532060 5.1:+27858428 MS.gene49664:CDS
GTGCAAGCCTTTACCGGAGG+CGG 0.534349 5.1:+27854661 MS.gene49664:CDS
TCGGCAGATCGAGAGTCTCA+TGG 0.543255 5.1:+27854637 MS.gene49664:CDS
CTCACCATCTTTGGATACAC+TGG 0.543454 5.1:+27857648 MS.gene49664:CDS
AGCGAGGGCGATTCTTGTTG+AGG 0.545800 5.1:+27854706 MS.gene49664:CDS
TTATCCAGTGTATCCAAAGA+TGG 0.549296 5.1:-27857652 None:intergenic
TTTACCGGAGGCGGATGTGA+AGG 0.556113 5.1:+27854670 MS.gene49664:CDS
CGATCCAGATCCGCGTGTGA+CGG 0.559405 5.1:-27854617 None:intergenic
TGCTGGATATACGTTTGGAC+AGG 0.564091 5.1:+27858197 MS.gene49664:CDS
ACCGTAACCGGACACTTCAC+CGG 0.565155 5.1:-27854743 None:intergenic
GGCGCTATGCGATCAAGCGA+GGG 0.566727 5.1:+27854691 MS.gene49664:CDS
TAGAGCTCATCAGCTTGTGA+TGG 0.570025 5.1:+27858266 MS.gene49664:CDS
AGATAGAATTACAATTCTCA+GGG 0.575342 5.1:+27856780 MS.gene49664:CDS
CATAAATTTATGCAGATCGT+GGG 0.576093 5.1:+27856704 MS.gene49664:intron
GACCAATGTGTGATCTCTTG+TGG 0.576863 5.1:+27858130 MS.gene49664:CDS
CGTCACACGCGGATCTGGAT+CGG 0.578779 5.1:+27854618 MS.gene49664:CDS
CCCAACCACAACGATCGTCT+GGG 0.580244 5.1:-27858158 None:intergenic
GCTCATCAGCTTGTGATGGA+AGG 0.582864 5.1:+27858270 MS.gene49664:CDS
TGCAGTTTGATCCAGCTCCA+AGG 0.585413 5.1:+27858500 MS.gene49664:CDS
AACCTCCTGTATGCGATCCA+AGG 0.586881 5.1:-27857683 None:intergenic
TTCAAACCTGACTCTCAATG+AGG 0.590959 5.1:-27857535 None:intergenic
AGGCGCTATGCGATCAAGCG+AGG 0.591197 5.1:+27854690 MS.gene49664:CDS
TTCAACCATGCCGTCACACG+CGG 0.601853 5.1:+27854607 None:intergenic
CGCCTTGGATCGCATACAGG+AGG 0.602261 5.1:+27857681 MS.gene49664:CDS
TCAAACCTGACTCTCAATGA+GGG 0.610004 5.1:-27857534 None:intergenic
TTGTGATGGAAGGATACAAT+TGG 0.613571 5.1:+27858280 MS.gene49664:CDS
CTCTCAATGAGGGCAGTCAG+AGG 0.620691 5.1:-27857524 None:intergenic
GGAAGGATACAATTGGTGCC+AGG 0.622019 5.1:+27858287 MS.gene49664:CDS
TGACACTACACGAAAGACAC+CGG 0.642789 5.1:+27858534 MS.gene49664:CDS
TCACACATTGGTCCTTCATG+CGG 0.659593 5.1:-27858120 None:intergenic
CCTGTATGCGATCCAAGGCG+CGG 0.673253 5.1:-27857678 None:intergenic
GGAGTGCAAGCCTTTACCGG+AGG 0.673342 5.1:+27854658 MS.gene49664:CDS
TGGCAGCCATATTCCCACAT+CGG 0.677796 5.1:-27858441 None:intergenic
AGATCGTGGGTACTATTCAG+TGG 0.679198 5.1:+27856717 MS.gene49664:intron
TCTGACCCAGACGATCGTTG+TGG 0.702404 5.1:+27858153 MS.gene49664:CDS
AACGTATATCCAGCACCACG+TGG 0.705317 5.1:-27858189 None:intergenic
GATAGAATTACAATTCTCAG+GGG 0.726280 5.1:+27856781 MS.gene49664:CDS
GACCACAAGAGATCACACAT+TGG 0.731997 5.1:-27858132 None:intergenic
GGTTGGGGTATATCTCCACG+TGG 0.804235 5.1:+27858174 MS.gene49664:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATGAAATATTAAATGA+GGG - chr5.1:27858021-27858040 None:intergenic 15.0%
!! CTATAAATTATAACACAATA+CGG - chr5.1:27855907-27855926 None:intergenic 15.0%
!! TAGTATCAAATAATTTACAT+TGG - chr5.1:27857749-27857768 None:intergenic 15.0%
!! TATTGAGTTTGATATATTAT+TGG + chr5.1:27855306-27855325 MS.gene49664:intron 15.0%
!! TTGAATATAAGAAACATAAA+AGG + chr5.1:27857375-27857394 MS.gene49664:intron 15.0%
!!! AGGTTAATTTGATTTATTTA+GGG + chr5.1:27854917-27854936 MS.gene49664:intron 15.0%
!!! ATAGTTATTTCAGTTTTATA+AGG + chr5.1:27855271-27855290 MS.gene49664:intron 15.0%
!!! TAAGGTTTGATTTTTTATTT+TGG + chr5.1:27855155-27855174 MS.gene49664:intron 15.0%
!!! TATATATAGTGTTTTGTTTT+CGG + chr5.1:27854975-27854994 MS.gene49664:intron 15.0%
!!! TTTGTAGTTTAATTTTGATA+CGG + chr5.1:27855642-27855661 MS.gene49664:intron 15.0%
!! AAATTTATGCCAGAATTATT+AGG - chr5.1:27856693-27856712 None:intergenic 20.0%
!! AGGTAAATAATCAAACAAAT+CGG - chr5.1:27857507-27857526 None:intergenic 20.0%
!! ATAAAGAGATAATTAGTATC+CGG - chr5.1:27854833-27854852 None:intergenic 20.0%
!! CAGAAATGAAATATTAAATG+AGG - chr5.1:27858022-27858041 None:intergenic 20.0%
!! GATACTAATTATCTCTTTAT+GGG + chr5.1:27854833-27854852 MS.gene49664:CDS 20.0%
!! TATTAAATGGCTATTATAAC+TGG + chr5.1:27857713-27857732 MS.gene49664:intron 20.0%
!!! ACAATTTTGCTTTTCAATAT+AGG + chr5.1:27858095-27858114 MS.gene49664:intron 20.0%
!!! ACTTGTCTTTTTATTTTTCT+TGG + chr5.1:27856021-27856040 MS.gene49664:intron 20.0%
!!! GAGGTTAATTTGATTTATTT+AGG + chr5.1:27854916-27854935 MS.gene49664:intron 20.0%
!!! GGATATACATATCATTTTAT+GGG + chr5.1:27856115-27856134 MS.gene49664:intron 20.0%
!!! GTCTTTTTTATTACTCTTTT+AGG + chr5.1:27858375-27858394 MS.gene49664:intron 20.0%
!!! GTTACTGTAATATATTTTGA+GGG + chr5.1:27856508-27856527 MS.gene49664:intron 20.0%
!!! TAATTGCTTCTTTTATATGT+TGG + chr5.1:27855386-27855405 MS.gene49664:intron 20.0%
!!! TCTAAAATCAAACATATGAT+TGG - chr5.1:27855701-27855720 None:intergenic 20.0%
!!! TGATACTAAGAACATTTTTA+TGG + chr5.1:27857761-27857780 MS.gene49664:intron 20.0%
!!! TGGATATACATATCATTTTA+TGG + chr5.1:27856114-27856133 MS.gene49664:intron 20.0%
!!! TGTTACTGTAATATATTTTG+AGG + chr5.1:27856507-27856526 MS.gene49664:intron 20.0%
!!! TTATGATGTTTTCTGAAAAA+TGG + chr5.1:27855433-27855452 MS.gene49664:intron 20.0%
!!! TTCATGTATGATAGAATTTT+TGG + chr5.1:27856083-27856102 MS.gene49664:intron 20.0%
!!! TTTATTTAGGGTTTGATTAT+TGG + chr5.1:27854929-27854948 MS.gene49664:intron 20.0%
! AATTAGATTATTTGCATCTG+TGG + chr5.1:27856652-27856671 MS.gene49664:intron 25.0%
! ACAATTCTCCTTTAAACAAA+TGG - chr5.1:27855993-27856012 None:intergenic 25.0%
! AGATAGAATTACAATTCTCA+GGG + chr5.1:27856780-27856799 MS.gene49664:CDS 25.0%
! AGCTGAATTAGATGTATATA+GGG + chr5.1:27855021-27855040 MS.gene49664:intron 25.0%
! ATGAATCAATCTAAGTGTTA+CGG - chr5.1:27858321-27858340 None:intergenic 25.0%
! ATTAGATTATTTGCATCTGT+GGG + chr5.1:27856653-27856672 MS.gene49664:intron 25.0%
! CAGAAAATCTGCAATAAAAA+AGG - chr5.1:27857613-27857632 None:intergenic 25.0%
! CCTCAAGAAAACAAAAAATT+AGG - chr5.1:27854900-27854919 None:intergenic 25.0%
! CTACAATTTCCTAATAATTC+TGG + chr5.1:27856681-27856700 MS.gene49664:intron 25.0%
! CTTGCTTAAAGTTTAAGAAT+AGG + chr5.1:27856918-27856937 MS.gene49664:intron 25.0%
! GAATTATTAGGAAATTGTAG+TGG - chr5.1:27856681-27856700 None:intergenic 25.0%
! GGATACTAATTATCTCTTTA+TGG + chr5.1:27854832-27854851 MS.gene49664:CDS 25.0%
! GTTGTATTTGTTTGACTAAT+TGG + chr5.1:27855475-27855494 MS.gene49664:intron 25.0%
! TAAAACACAAACACAATGAA+TGG - chr5.1:27856969-27856988 None:intergenic 25.0%
! TAAGTTTGAGCTCAAAAAAT+TGG + chr5.1:27856211-27856230 MS.gene49664:intron 25.0%
! TATATCTTTCTCAGTATTCT+GGG + chr5.1:27857102-27857121 MS.gene49664:intron 25.0%
! TTGTTCTTGAGATGAATTAT+TGG + chr5.1:27855184-27855203 MS.gene49664:intron 25.0%
!! ACTTAGATTGATTCATTTCA+AGG + chr5.1:27858325-27858344 MS.gene49664:intron 25.0%
!! AGGTGAATTTTATGCATATA+AGG + chr5.1:27855137-27855156 MS.gene49664:intron 25.0%
!! CTTGTATAAGAGGATTTTAT+AGG + chr5.1:27856335-27856354 MS.gene49664:intron 25.0%
!! TGTATTTGAGTCTATTTTGT+TGG + chr5.1:27855215-27855234 MS.gene49664:intron 25.0%
!!! AGTGTTTTAGTGAGTTTTTA+AGG + chr5.1:27857138-27857157 MS.gene49664:intron 25.0%
!!! ATAAAAAAGGTGTTAGACAA+TGG - chr5.1:27857600-27857619 None:intergenic 25.0%
!!! ATTTGTTTTCTTACCATTTC+AGG + chr5.1:27857420-27857439 MS.gene49664:intron 25.0%
!!! CCTAATTTTTTGTTTTCTTG+AGG + chr5.1:27854897-27854916 MS.gene49664:intron 25.0%
!!! GTATGATAGAATTTTTGGTT+TGG + chr5.1:27856088-27856107 MS.gene49664:intron 25.0%
!!! GTTTGATTATTGGTTTTATG+AGG + chr5.1:27854939-27854958 MS.gene49664:intron 25.0%
!!! TAGAATTTTTGGTTTGGAAT+TGG + chr5.1:27856094-27856113 MS.gene49664:intron 25.0%
!!! TCAAAGTGTCTATATTTTGA+CGG + chr5.1:27856395-27856414 MS.gene49664:intron 25.0%
!!! TGTATATAGGGTTTGATTTT+TGG + chr5.1:27855033-27855052 MS.gene49664:intron 25.0%
!!! TTATATGTTGGAGTCTTTTT+TGG + chr5.1:27855398-27855417 MS.gene49664:intron 25.0%
!!! TTTTTGGTTTTGGTATTTCT+TGG + chr5.1:27855049-27855068 MS.gene49664:intron 25.0%
AACACAATGAATGGAGTAAT+TGG - chr5.1:27856960-27856979 None:intergenic 30.0%
AACCAAGATCTGAAAAAATG+AGG - chr5.1:27855959-27855978 None:intergenic 30.0%
ACTTTGCATACCATACTTTA+GGG - chr5.1:27857818-27857837 None:intergenic 30.0%
AGGTGAATTTGATGCATATA+GGG + chr5.1:27855078-27855097 MS.gene49664:intron 30.0%
CATAAATTTATGCAGATCGT+GGG + chr5.1:27856704-27856723 MS.gene49664:intron 30.0%
CTATATCTTTCTCAGTATTC+TGG + chr5.1:27857101-27857120 MS.gene49664:intron 30.0%
CTTAACAACTTCAATATCTG+AGG + chr5.1:27856543-27856562 MS.gene49664:intron 30.0%
CTTACACTTGAGTAATTTGA+CGG - chr5.1:27856819-27856838 None:intergenic 30.0%
GAACTTGAAACTTGTATAAG+AGG + chr5.1:27856325-27856344 MS.gene49664:intron 30.0%
GAACTTTACATTGAGATAGA+TGG - chr5.1:27857012-27857031 None:intergenic 30.0%
GAGATAGAATTACAATTCTC+AGG + chr5.1:27856779-27856798 MS.gene49664:CDS 30.0%
GAGCTGAATTAGATGTATAT+AGG + chr5.1:27855020-27855039 MS.gene49664:intron 30.0%
GATAGAATTACAATTCTCAG+GGG + chr5.1:27856781-27856800 MS.gene49664:CDS 30.0%
GATGAATGCTTGAGAAAATA+TGG + chr5.1:27857455-27857474 MS.gene49664:CDS 30.0%
GGGAAAAAAGATCTTTAACT+TGG - chr5.1:27857797-27857816 None:intergenic 30.0%
TAATCCATATAACACTGTCA+GGG - chr5.1:27855797-27855816 None:intergenic 30.0%
TACAAGTGAAACATCATATC+TGG + chr5.1:27857228-27857247 MS.gene49664:intron 30.0%
TACTTTGCATACCATACTTT+AGG - chr5.1:27857819-27857838 None:intergenic 30.0%
TCTCAATGTAAAGTTCAATG+CGG + chr5.1:27857016-27857035 MS.gene49664:intron 30.0%
TGAATCAATCTAAGTGTTAC+GGG - chr5.1:27858320-27858339 None:intergenic 30.0%
TGCTAGATTCAGATGTAATA+AGG + chr5.1:27856570-27856589 MS.gene49664:intron 30.0%
TGTGCAACACAATTAAGAAA+CGG + chr5.1:27856181-27856200 MS.gene49664:intron 30.0%
TTAATCCATATAACACTGTC+AGG - chr5.1:27855798-27855817 None:intergenic 30.0%
TTGGTATTTCTTGGTTTATG+AGG + chr5.1:27855058-27855077 MS.gene49664:intron 30.0%
TTTACATTGAGATAGATGGA+TGG - chr5.1:27857008-27857027 None:intergenic 30.0%
! ATGATCTGATTGAGCTTTTT+CGG + chr5.1:27854792-27854811 MS.gene49664:CDS 30.0%
! GAGGTTTGTGTGTTATTAAA+TGG + chr5.1:27857700-27857719 MS.gene49664:intron 30.0%
! GATTGCAAAAAATCAAGTTG+CGG - chr5.1:27857059-27857078 None:intergenic 30.0%
! GTTGTCTGCATTTTTCTTTT+TGG + chr5.1:27857925-27857944 MS.gene49664:intron 30.0%
!! CTGTAATATATTTTGAGGGA+AGG + chr5.1:27856512-27856531 MS.gene49664:intron 30.0%
!! GTTATGTGCCATTTGTTTAA+AGG + chr5.1:27855982-27856001 MS.gene49664:intron 30.0%
!! TTTTCGGTTTTGGTGATTTT+TGG + chr5.1:27854991-27855010 MS.gene49664:intron 30.0%
!! TTTTCTTACCATTTCAGGTA+TGG + chr5.1:27857425-27857444 MS.gene49664:intron 30.0%
!!! ATCCTCATTTTTTCAGATCT+TGG + chr5.1:27855954-27855973 MS.gene49664:intron 30.0%
!!! ATCTTTTTTCCCCTAAAGTA+TGG + chr5.1:27857805-27857824 MS.gene49664:intron 30.0%
!!! ATGTTTTAAGTTTGTGTGAG+TGG + chr5.1:27856272-27856291 MS.gene49664:intron 30.0%
!!! TAGGGTTTGATTTTTGGTTT+TGG + chr5.1:27855039-27855058 MS.gene49664:intron 30.0%
!!! TAGTGTTTTGTTTTCGGTTT+TGG + chr5.1:27854981-27855000 MS.gene49664:intron 30.0%
!!! TGGAAATTGCTGTTTTTAGT+TGG + chr5.1:27855453-27855472 MS.gene49664:intron 30.0%
AATAACAGATTGGCATTCAC+AGG - chr5.1:27857312-27857331 None:intergenic 35.0%
AATATGGAAATGCCAATGTC+TGG + chr5.1:27857471-27857490 MS.gene49664:CDS 35.0%
AATCATTCCAACAGAAAAGC+AGG - chr5.1:27856053-27856072 None:intergenic 35.0%
AGAAAGAGTTGTAAAGTGTG+TGG + chr5.1:27857167-27857186 MS.gene49664:intron 35.0%
AGAATGGTTATAGCCAAAGT+TGG - chr5.1:27856598-27856617 None:intergenic 35.0%
AGTGACATGTGTTTGTATTG+AGG + chr5.1:27856471-27856490 MS.gene49664:intron 35.0%
ATCCCAAACCAATAACAGAT+TGG - chr5.1:27857322-27857341 None:intergenic 35.0%
ATTCTCTCCAATTTCCAGAA+TGG - chr5.1:27858464-27858483 None:intergenic 35.0%
CTCAATGTAAAGTTCAATGC+GGG + chr5.1:27857017-27857036 MS.gene49664:intron 35.0%
CTCTTTATGGGAGATTATGT+AGG + chr5.1:27854845-27854864 MS.gene49664:CDS 35.0%
CTTTGCATACCATACTTTAG+GGG - chr5.1:27857817-27857836 None:intergenic 35.0%
GAAACATGAAACATCCAAAG+AGG - chr5.1:27857999-27858018 None:intergenic 35.0%
GAAATGGTCAAGATTTAGTC+AGG - chr5.1:27855881-27855900 None:intergenic 35.0%
GAGGTGAATTTGATGCATAT+AGG + chr5.1:27855077-27855096 MS.gene49664:intron 35.0%
GCATAAATTTATGCAGATCG+TGG + chr5.1:27856703-27856722 MS.gene49664:intron 35.0%
GGTAAAGAATTTCCAGACAT+TGG - chr5.1:27857486-27857505 None:intergenic 35.0%
GTGCAACACAATTAAGAAAC+GGG + chr5.1:27856182-27856201 MS.gene49664:intron 35.0%
TAACACAATACGGACAGAAA+TGG - chr5.1:27855897-27855916 None:intergenic 35.0%
TACACAATAGCACATTCACT+CGG - chr5.1:27857267-27857286 None:intergenic 35.0%
TCAATGTAAAGTTCAATGCG+GGG + chr5.1:27857018-27857037 MS.gene49664:intron 35.0%
TCTGGAAATTGGAGAGAATA+TGG + chr5.1:27858465-27858484 MS.gene49664:CDS 35.0%
TGATATGTAGTCAGCTAGTT+TGG + chr5.1:27855577-27855596 MS.gene49664:intron 35.0%
TGCAACACAATTAAGAAACG+GGG + chr5.1:27856183-27856202 MS.gene49664:intron 35.0%
TGTGAATGCCAATCTGTTAT+TGG + chr5.1:27857311-27857330 MS.gene49664:intron 35.0%
TTATCCAGTGTATCCAAAGA+TGG - chr5.1:27857655-27857674 None:intergenic 35.0%
TTCTTAATTGTGTTGCACAC+CGG - chr5.1:27856180-27856199 None:intergenic 35.0%
TTTACCCTGACAGTGTTATA+TGG + chr5.1:27855790-27855809 MS.gene49664:intron 35.0%
! ATGCCAATCTGTTATTGGTT+TGG + chr5.1:27857316-27857335 MS.gene49664:intron 35.0%
! ATGTAATAAGGTGCCAACTT+TGG + chr5.1:27856582-27856601 MS.gene49664:intron 35.0%
! GGTTTGGGATGATATGAAAT+TGG + chr5.1:27857332-27857351 MS.gene49664:intron 35.0%
! TGCATATAGGGTGTGATTTT+TGG + chr5.1:27855090-27855109 MS.gene49664:intron 35.0%
! TGTGTTTTACAACTTTCTGC+TGG + chr5.1:27856980-27856999 MS.gene49664:intron 35.0%
! TTGCAGATTTTCTGTTTGCA+TGG + chr5.1:27857619-27857638 MS.gene49664:intron 35.0%
! TTGTGATGGAAGGATACAAT+TGG + chr5.1:27858280-27858299 MS.gene49664:CDS 35.0%
!! AATGGATAGTGGTTTTACCA+AGG + chr5.1:27857192-27857211 MS.gene49664:intron 35.0%
!! ACTCTTTTAGGAGAAGAATG+TGG + chr5.1:27858387-27858406 MS.gene49664:intron 35.0%
!! ATGGATAGTGGTTTTACCAA+GGG + chr5.1:27857193-27857212 MS.gene49664:intron 35.0%
!! TATTTTGAGGGAAGGTTATG+AGG + chr5.1:27856520-27856539 MS.gene49664:intron 35.0%
!! TGCCAATCTGTTATTGGTTT+GGG + chr5.1:27857317-27857336 MS.gene49664:intron 35.0%
!! TGGTGATGTTTGCTTTTATG+AGG + chr5.1:27855117-27855136 MS.gene49664:intron 35.0%
!!! GTTGGAGTCTTTTTTGGAAA+GGG + chr5.1:27855404-27855423 MS.gene49664:intron 35.0%
!!! GTTGGTTTTTGATGAGTGTT+TGG + chr5.1:27855233-27855252 MS.gene49664:intron 35.0%
!!! TGTTGGAGTCTTTTTTGGAA+AGG + chr5.1:27855403-27855422 MS.gene49664:intron 35.0%
!!! TTGGTGTTGTGTTCGAATTT+TGG + chr5.1:27855325-27855344 MS.gene49664:intron 35.0%
AATGTAAAGTTCAATGCGGG+GGG + chr5.1:27857020-27857039 MS.gene49664:intron 40.0%
ACGGTTTGTGGTGATATTCA+TGG + chr5.1:27854761-27854780 MS.gene49664:CDS 40.0%
ATATCACCACAAACCGTAAC+CGG - chr5.1:27854758-27854777 None:intergenic 40.0%
ATTCCAACAGAAAAGCAGGA+GGG - chr5.1:27856049-27856068 None:intergenic 40.0%
CAAATTACTGCTACCGATGT+GGG + chr5.1:27858428-27858447 MS.gene49664:CDS 40.0%
CAATGTAAAGTTCAATGCGG+GGG + chr5.1:27857019-27857038 MS.gene49664:intron 40.0%
CCAGTAAGCGAATCAAAGAA+TGG - chr5.1:27856614-27856633 None:intergenic 40.0%
CGTAGAAACCATACCTGAAA+TGG - chr5.1:27857436-27857455 None:intergenic 40.0%
GCTCAGTTCAATCACACAAA+TGG + chr5.1:27858228-27858247 MS.gene49664:CDS 40.0%
GTTGTAAAGTGTGTGGTGAA+TGG + chr5.1:27857174-27857193 MS.gene49664:intron 40.0%
TCAAACCTGACTCTCAATGA+GGG - chr5.1:27857537-27857556 None:intergenic 40.0%
TCAATATAGGTTCCGCATGA+AGG + chr5.1:27858108-27858127 MS.gene49664:intron 40.0%
TTCAAACCTGACTCTCAATG+AGG - chr5.1:27857538-27857557 None:intergenic 40.0%
TTGTGTAGACGTGAATTACG+TGG + chr5.1:27857280-27857299 MS.gene49664:intron 40.0%
! AACCTCTACGACATGGTTTT+AGG - chr5.1:27858050-27858069 None:intergenic 40.0%
! AAGCAAAATTGTCACTTGCC+AGG - chr5.1:27858087-27858106 None:intergenic 40.0%
! AGTGGAGACTGTTTCACTTT+TGG + chr5.1:27856735-27856754 MS.gene49664:CDS 40.0%
! CAGATTTTCTGTTTGCATGG+AGG + chr5.1:27857622-27857641 MS.gene49664:intron 40.0%
! CCATTCTTTGATTCGCTTAC+TGG + chr5.1:27856611-27856630 MS.gene49664:intron 40.0%
!!! AGGGTGTGATTTTTGGTTCT+TGG + chr5.1:27855097-27855116 MS.gene49664:intron 40.0%
!!! ATTGAGCTTTTTCGGATTGG+TGG + chr5.1:27854800-27854819 MS.gene49664:CDS 40.0%
!!! CTGATTGAGCTTTTTCGGAT+TGG + chr5.1:27854797-27854816 MS.gene49664:CDS 40.0%
AGATCGTGGGTACTATTCAG+TGG + chr5.1:27856717-27856736 MS.gene49664:intron 45.0%
AGTGTGTGGTGAATGGATAG+TGG + chr5.1:27857181-27857200 MS.gene49664:intron 45.0%
AGTTACTATCACACCGTAGG+GGG + chr5.1:27856143-27856162 MS.gene49664:intron 45.0%
ATGTAAAGTTCAATGCGGGG+GGG + chr5.1:27857021-27857040 MS.gene49664:intron 45.0%
CAGTATTCTGGGTGATGTTC+TGG + chr5.1:27857113-27857132 MS.gene49664:intron 45.0%
CAGTTACTATCACACCGTAG+GGG + chr5.1:27856142-27856161 MS.gene49664:intron 45.0%
CATTCCAACAGAAAAGCAGG+AGG - chr5.1:27856050-27856069 None:intergenic 45.0%
CCAAATTACTGCTACCGATG+TGG + chr5.1:27858427-27858446 MS.gene49664:CDS 45.0%
CCACATCGGTAGCAGTAATT+TGG - chr5.1:27858430-27858449 None:intergenic 45.0%
CCATGTGCTTTATGCCTCTT+TGG + chr5.1:27857982-27858001 MS.gene49664:intron 45.0%
CTCACCATCTTTGGATACAC+TGG + chr5.1:27857648-27857667 MS.gene49664:CDS 45.0%
GACCAATGTGTGATCTCTTG+TGG + chr5.1:27858130-27858149 MS.gene49664:CDS 45.0%
GACCACAAGAGATCACACAT+TGG - chr5.1:27858135-27858154 None:intergenic 45.0%
GAGGCATAAAGCACATGGTA+AGG - chr5.1:27857980-27857999 None:intergenic 45.0%
GCAGTTACTATCACACCGTA+GGG + chr5.1:27856141-27856160 MS.gene49664:intron 45.0%
GGTTGACTGGATATATTGCC+TGG + chr5.1:27858066-27858085 MS.gene49664:intron 45.0%
TAGAGCTCATCAGCTTGTGA+TGG + chr5.1:27858266-27858285 MS.gene49664:CDS 45.0%
TCACACATTGGTCCTTCATG+CGG - chr5.1:27858123-27858142 None:intergenic 45.0%
TGACACTACACGAAAGACAC+CGG + chr5.1:27858534-27858553 MS.gene49664:CDS 45.0%
TGAGGAATGGAACGTTCAAC+CGG + chr5.1:27854724-27854743 MS.gene49664:CDS 45.0%
TGCAGTTACTATCACACCGT+AGG + chr5.1:27856140-27856159 MS.gene49664:intron 45.0%
TGCCTAAAACCATGTCGTAG+AGG + chr5.1:27858045-27858064 MS.gene49664:intron 45.0%
TGCTGGATATACGTTTGGAC+AGG + chr5.1:27858197-27858216 MS.gene49664:CDS 45.0%
TGTTTCACTTGTACGCTCCA+TGG - chr5.1:27857221-27857240 None:intergenic 45.0%
TTCCAACAGAAAAGCAGGAG+GGG - chr5.1:27856048-27856067 None:intergenic 45.0%
! ATGGCTGCCATTCTGGAAAT+TGG + chr5.1:27858454-27858473 MS.gene49664:CDS 45.0%
! CCAAAGAGGCATAAAGCACA+TGG - chr5.1:27857985-27858004 None:intergenic 45.0%
!! GGAGACTGTTTCACTTTTGG+TGG + chr5.1:27856738-27856757 MS.gene49664:CDS 45.0%
AACCTCCTGTATGCGATCCA+AGG - chr5.1:27857686-27857705 None:intergenic 50.0%
AACGTATATCCAGCACCACG+TGG - chr5.1:27858192-27858211 None:intergenic 50.0%
AAGTGTCCGGTTACGGTTTG+TGG + chr5.1:27854749-27854768 MS.gene49664:CDS 50.0%
ACCATGTCGTAGAGGTTGAC+TGG + chr5.1:27858053-27858072 MS.gene49664:intron 50.0%
ACTGGATAATATCCGCGCCT+TGG + chr5.1:27857666-27857685 MS.gene49664:CDS 50.0%
CATGGAGTGCAAGCCTTTAC+CGG + chr5.1:27854655-27854674 MS.gene49664:CDS 50.0%
CTGCTACCGATGTGGGAATA+TGG + chr5.1:27858435-27858454 MS.gene49664:CDS 50.0%
GGGCGATTCTTGTTGAGGAA+TGG + chr5.1:27854711-27854730 MS.gene49664:CDS 50.0%
GGTGTCTTTCGTGTAGTGTC+AGG - chr5.1:27858535-27858554 None:intergenic 50.0%
GTGTCAGGCTCAATTTGCCT+TGG - chr5.1:27858520-27858539 None:intergenic 50.0%
TATCACACCGTAGGGGGTTA+GGG + chr5.1:27856149-27856168 MS.gene49664:intron 50.0%
TCCAACAGAAAAGCAGGAGG+GGG - chr5.1:27856047-27856066 None:intergenic 50.0%
TCCAGTCAACCTCTACGACA+TGG - chr5.1:27858057-27858076 None:intergenic 50.0%
TGCAGTTTGATCCAGCTCCA+AGG + chr5.1:27858500-27858519 MS.gene49664:CDS 50.0%
TGGAGGTCTCTCACCATCTT+TGG + chr5.1:27857639-27857658 MS.gene49664:CDS 50.0%
TGGCAGCCATATTCCCACAT+CGG - chr5.1:27858444-27858463 None:intergenic 50.0%
TGGGAATATGGCTGCCATTC+TGG + chr5.1:27858447-27858466 MS.gene49664:CDS 50.0%
! CGTGGTGCTGGATATACGTT+TGG + chr5.1:27858192-27858211 MS.gene49664:CDS 50.0%
! GCTCATCAGCTTGTGATGGA+AGG + chr5.1:27858270-27858289 MS.gene49664:CDS 50.0%
! GGAAGGATACAATTGGTGCC+AGG + chr5.1:27858287-27858306 MS.gene49664:CDS 50.0%
!! TCGGATTGGTGGAAATGCTC+CGG + chr5.1:27854811-27854830 MS.gene49664:CDS 50.0%
!!! TGGTTTTACCAAGGGCACCA+TGG + chr5.1:27857201-27857220 MS.gene49664:intron 50.0%
AAGTTCAATGCGGGGGGGTT+CGG + chr5.1:27857026-27857045 MS.gene49664:intron 55.0%
ACCCAGACGATCGTTGTGGT+TGG + chr5.1:27858157-27858176 MS.gene49664:CDS 55.0%
ACCGTAACCGGACACTTCAC+CGG - chr5.1:27854746-27854765 None:intergenic 55.0%
AGCGAGGGCGATTCTTGTTG+AGG + chr5.1:27854706-27854725 MS.gene49664:CDS 55.0%
AGTGTTACGGGTCAGTCACC+TGG - chr5.1:27858308-27858327 None:intergenic 55.0%
CCAGACGATCGTTGTGGTTG+GGG + chr5.1:27858159-27858178 MS.gene49664:CDS 55.0%
CCCAACCACAACGATCGTCT+GGG - chr5.1:27858161-27858180 None:intergenic 55.0%
CCCAGACGATCGTTGTGGTT+GGG + chr5.1:27858158-27858177 MS.gene49664:CDS 55.0%
CTATCACACCGTAGGGGGTT+AGG + chr5.1:27856148-27856167 MS.gene49664:intron 55.0%
CTCTCAATGAGGGCAGTCAG+AGG - chr5.1:27857527-27857546 None:intergenic 55.0%
GACTGCCCTCATTGAGAGTC+AGG + chr5.1:27857529-27857548 MS.gene49664:CDS 55.0%
GGCTCAATTTGCCTTGGAGC+TGG - chr5.1:27858514-27858533 None:intergenic 55.0%
GGTATATCTCCACGTGGTGC+TGG + chr5.1:27858180-27858199 MS.gene49664:CDS 55.0%
GGTTGGGGTATATCTCCACG+TGG + chr5.1:27858174-27858193 MS.gene49664:CDS 55.0%
TCGGCAGATCGAGAGTCTCA+TGG + chr5.1:27854637-27854656 MS.gene49664:CDS 55.0%
TCTGACCCAGACGATCGTTG+TGG + chr5.1:27858153-27858172 MS.gene49664:CDS 55.0%
TTCACATCCGCCTCCGGTAA+AGG - chr5.1:27854671-27854690 None:intergenic 55.0%
TTTACCGGAGGCGGATGTGA+AGG + chr5.1:27854670-27854689 MS.gene49664:CDS 55.0%
! ACCGGTGAAGTGTCCGGTTA+CGG + chr5.1:27854742-27854761 MS.gene49664:CDS 55.0%
! CGTTCAACCGGTGAAGTGTC+CGG + chr5.1:27854736-27854755 MS.gene49664:CDS 55.0%
AGGCGCTATGCGATCAAGCG+AGG + chr5.1:27854690-27854709 MS.gene49664:CDS 60.0%
CCCCAACCACAACGATCGTC+TGG - chr5.1:27858162-27858181 None:intergenic 60.0%
CCTGTATGCGATCCAAGGCG+CGG - chr5.1:27857681-27857700 None:intergenic 60.0%
CGATCCAGATCCGCGTGTGA+CGG - chr5.1:27854620-27854639 None:intergenic 60.0%
CGCCTTGGATCGCATACAGG+AGG + chr5.1:27857681-27857700 MS.gene49664:CDS 60.0%
CGTCACACGCGGATCTGGAT+CGG + chr5.1:27854618-27854637 MS.gene49664:CDS 60.0%
GGAGTGCAAGCCTTTACCGG+AGG + chr5.1:27854658-27854677 MS.gene49664:CDS 60.0%
GGCGCTATGCGATCAAGCGA+GGG + chr5.1:27854691-27854710 MS.gene49664:CDS 60.0%
GTGCAAGCCTTTACCGGAGG+CGG + chr5.1:27854661-27854680 MS.gene49664:CDS 60.0%
TGTACGCTCCATGGTGCCCT+TGG - chr5.1:27857212-27857231 None:intergenic 60.0%
!! GCCCCCTCCTGCTTTTCTGT+TGG + chr5.1:27856043-27856062 MS.gene49664:intron 60.0%
AGCGCCTTCACATCCGCCTC+CGG - chr5.1:27854677-27854696 None:intergenic 65.0%
CACACCGTAGGGGGTTAGGG+TGG + chr5.1:27856152-27856171 MS.gene49664:intron 65.0%
CCGCGCCTTGGATCGCATAC+AGG + chr5.1:27857678-27857697 MS.gene49664:CDS 65.0%
GGCACCACCCTAACCCCCTA+CGG - chr5.1:27856159-27856178 None:intergenic 65.0%
GTAGGGGGTTAGGGTGGTGC+CGG + chr5.1:27856158-27856177 MS.gene49664:intron 65.0%
! CAATGCGGGGGGGTTCGGTT+AGG + chr5.1:27857031-27857050 MS.gene49664:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 27854614 27858570 27854614 ID=MS.gene49664
chr5.1 mRNA 27854614 27858570 27854614 ID=MS.gene49664.t1;Parent=MS.gene49664
chr5.1 exon 27854614 27854866 27854614 ID=MS.gene49664.t1.exon1;Parent=MS.gene49664.t1
chr5.1 CDS 27854614 27854866 27854614 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
chr5.1 exon 27856719 27856833 27856719 ID=MS.gene49664.t1.exon2;Parent=MS.gene49664.t1
chr5.1 CDS 27856719 27856833 27856719 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
chr5.1 exon 27857442 27857550 27857442 ID=MS.gene49664.t1.exon3;Parent=MS.gene49664.t1
chr5.1 CDS 27857442 27857550 27857442 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
chr5.1 exon 27857625 27857702 27857625 ID=MS.gene49664.t1.exon4;Parent=MS.gene49664.t1
chr5.1 CDS 27857625 27857702 27857625 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
chr5.1 exon 27858117 27858308 27858117 ID=MS.gene49664.t1.exon5;Parent=MS.gene49664.t1
chr5.1 CDS 27858117 27858308 27858117 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
chr5.1 exon 27858397 27858570 27858397 ID=MS.gene49664.t1.exon6;Parent=MS.gene49664.t1
chr5.1 CDS 27858397 27858570 27858397 ID=cds.MS.gene49664.t1;Parent=MS.gene49664.t1
Gene Sequence

>MS.gene49664

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTCATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGGGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGGTTAGTTTCTTGAATTCGATTCTTAAAATTCCTAATTTTTTGTTTTCTTGAGGTTAATTTGATTTATTTAGGGTTTGATTATTGGTTTTATGAGGTTAATTTGATTTATATATATAGTGTTTTGTTTTCGGTTTTGGTGATTTTTGGTTTTATGAGCTGAATTAGATGTATATAGGGTTTGATTTTTGGTTTTGGTATTTCTTGGTTTATGAGGTGAATTTGATGCATATAGGGTGTGATTTTTGGTTCTTGGTGATGTTTGCTTTTATGAGGTGAATTTTATGCATATAAGGTTTGATTTTTTATTTTGGTAATTTTTGTTCTTGAGATGAATTATTGGTTTTGTGTTGTATTTGAGTCTATTTTGTTGGTTTTTGATGAGTGTTTGGTTGTTATATTTGAAGATAGTTATTTCAGTTTTATAAGGTGAATTGATGTATATTGAGTTTGATATATTATTGGTGTTGTGTTCGAATTTTGGTAGTTTTTTTTGTTTTATAGTTTAATTTGATATTGTAATAATTGCTTCTTTTATATGTTGGAGTCTTTTTTGGAAAGGGTTTTGTTTATGATGTTTTCTGAAAAATGGAAATTGCTGTTTTTAGTTGGTTGTATTTGTTTGACTAATTGGTGAGTGATTGTGTAAAATTGTCATGTTTGTTGTGTAACTGTTGAAGCAACATGATTTAGATGCTTCTTTCGCTGTTTATTGATATGTAGTCAGCTAGTTTGGATCAATATCAAAGCAATGTCGAGATCATGTGATTAGTCAAATTTTGTAGTTTAATTTTGATACGGTGTAGAAAGTTTTGCACTTTCAACAAATCACAACCAATCATATGTTTGATTTTAGAAGTAGTTTTGATCAAAGTCAAACATTTCAAATGATCAGTCGATTACGATTGATTGACAGTGTAAAAATCTTTACCCTGACAGTGTTATATGGATTAAGTACTAACTTTTTTTTTTTTATAAATGTCACGCTAAGTTTTATGCATGTTTTATTAGTTGCCTGACTAAATCTTGACCATTTCTGTCCGTATTGTGTTATAATTTATAGCTTCATGTCACTGTTGAAATGTATAATATCCTCATTTTTTCAGATCTTGGTTTTAGTTATGTGCCATTTGTTTAAAGGAGAATTGTTTGATAAAACTTGTCTTTTTATTTTTCTTGGCCCCCTCCTGCTTTTCTGTTGGAATGATTGTTAATGTTATTCATGTATGATAGAATTTTTGGTTTGGAATTGGATATACATATCATTTTATGGGAGTGCAGTTACTATCACACCGTAGGGGGTTAGGGTGGTGCCGGTGTGCAACACAATTAAGAAACGGGGAGATATAAGTTTGAGCTCAAAAAATTGGATAAATGTAAAATAGTCTTGCTAGTTGTGAATTTCTTAATGTTTTAAGTTTGTGTGAGTGGCAAGTGATGACAAAAGAGAGATTGTTCAATGAACTTGAAACTTGTATAAGAGGATTTTATAGGATAAATGTCAGTGCTACTGCTAAGTGAAGTTCTATTGTCAAAGTGTCTATATTTTGACGGAATTTGCTGATAGCATAAAAATGACATAAGTGTGATAGCATAAAAATGACATAAGTGACATGTGTTTGTATTGAGGTATCAAAATTGAGTGTTACTGTAATATATTTTGAGGGAAGGTTATGAGGCTTAACAACTTCAATATCTGAGGATGTTGCTAGATTCAGATGTAATAAGGTGCCAACTTTGGCTATAACCATTCTTTGATTCGCTTACTGGATTTAATTATTATGTTCAAATTAGATTATTTGCATCTGTGGGAACCACTACAATTTCCTAATAATTCTGGCATAAATTTATGCAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTAAGAACACTTTCTTCTCAAATTACTCATTGCTATTTGCGTATGTAAATATTATCATGTTTAAGCTGAAGTTTCATTATAATTCTTGCTTAAAGTTTAAGAATAGGTTAATGATGAGCATCTCCAATTACTCCATTCATTGTGTTTGTGTTTTACAACTTTCTGCTGGCTCCATCCATCTATCTCAATGTAAAGTTCAATGCGGGGGGGTTCGGTTAGGAGCCGCAACTTGATTTTTTGCAATCATATTATGATATTCTTATTTTTCTATATCTTTCTCAGTATTCTGGGTGATGTTCTGGATAGTGTTTTAGTGAGTTTTTAAGGCTTTAGAGAAAGAGTTGTAAAGTGTGTGGTGAATGGATAGTGGTTTTACCAAGGGCACCATGGAGCGTACAAGTGAAACATCATATCTGGCTTGTGTGCGTATCCGAGTGAATGTGCTATTGTGTAGACGTGAATTACGTGGTTCATGCCTGTGAATGCCAATCTGTTATTGGTTTGGGATGATATGAAATTGGAAAAGAGAAAAATGTAATCTTTGAATATAAGAAACATAAAAGGAATTTTATTTTTGAAGTTGTTAATTTGTTTTCTTACCATTTCAGGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGGTTTGAACTTCAATATGTTTCAAAATGTTTCTCTGATTTCTTTATGCCATTGTCTAACACCTTTTTTATTGCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTTGTGTGTTATTAAATGGCTATTATAACTGGCAATATCTTACCAATGTAAATTATTTGATACTAAGAACATTTTTATGGAAAGCATGTTCCAAGTTAAAGATCTTTTTTCCCCTAAAGTATGGTATGCAAAGTAATATATTTTATTTGATATTTCAACTTGCAATTCTTCGTTGTAGTTTGTAATTGCTTTCATGTTTCATTTTGTCGATAGTTTAGAAAGTTGTCTGCATTTTTCTTTTTGGTTGAATCAACTATTAATTATTTGCTTCAGCCTTACCATGTGCTTTATGCCTCTTTGGATGTTTCATGTTTCCCTCATTTAATATTTCATTTCTGTATTGCCTAAAACCATGTCGTAGAGGTTGACTGGATATATTGCCTGGCAAGTGACAATTTTGCTTTTCAATATAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGTGACTGACCCGTAACACTTAGATTGATTCATTTCAAGGATACTTATTACGCTCTATGTATTGACTGTCTTTTTTATTACTCTTTTAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA

Protein sequence

>MS.gene49664.t1

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL