Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32487.t1 | XP_003616511.1 | 98.8 | 324 | 3 | 1 | 1 | 323 | 1 | 324 | 4.40E-187 | 663.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32487.t1 | P48484 | 91.6 | 308 | 26 | 0 | 16 | 323 | 14 | 321 | 2.0e-172 | 606.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32487.t1 | G7K216 | 98.8 | 324 | 3 | 1 | 1 | 323 | 1 | 324 | 3.2e-187 | 663.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene58553 | MS.gene32487 | PPI |
MS.gene012239 | MS.gene32487 | PPI |
MS.gene06018 | MS.gene32487 | PPI |
MS.gene23125 | MS.gene32487 | PPI |
MS.gene55750 | MS.gene32487 | PPI |
MS.gene32487 | MS.gene63084 | PPI |
MS.gene89706 | MS.gene32487 | PPI |
MS.gene24845 | MS.gene32487 | PPI |
MS.gene000895 | MS.gene32487 | PPI |
MS.gene051828 | MS.gene32487 | PPI |
MS.gene55751 | MS.gene32487 | PPI |
MS.gene048874 | MS.gene32487 | PPI |
MS.gene072506 | MS.gene32487 | PPI |
MS.gene99972 | MS.gene32487 | PPI |
MS.gene21700 | MS.gene32487 | PPI |
MS.gene051793 | MS.gene32487 | PPI |
MS.gene32487 | MS.gene25326 | PPI |
MS.gene050914 | MS.gene32487 | PPI |
MS.gene032713 | MS.gene32487 | PPI |
MS.gene32487 | MS.gene49664 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32487.t1 | MTR_5g081230 | 98.765 | 324 | 3 | 1 | 1 | 323 | 1 | 324 | 0.0 | 658 |
MS.gene32487.t1 | MTR_1g079950 | 89.404 | 302 | 31 | 1 | 16 | 317 | 30 | 330 | 0.0 | 571 |
MS.gene32487.t1 | MTR_1g079950 | 89.404 | 302 | 31 | 1 | 16 | 317 | 1 | 301 | 0.0 | 571 |
MS.gene32487.t1 | MTR_1g079950 | 89.404 | 302 | 31 | 1 | 16 | 317 | 1 | 301 | 0.0 | 570 |
MS.gene32487.t1 | MTR_1g079950 | 89.404 | 302 | 31 | 1 | 16 | 317 | 1 | 301 | 0.0 | 569 |
MS.gene32487.t1 | MTR_7g116380 | 87.748 | 302 | 36 | 1 | 16 | 317 | 1 | 301 | 0.0 | 560 |
MS.gene32487.t1 | MTR_7g116380 | 87.748 | 302 | 36 | 1 | 16 | 317 | 1 | 301 | 0.0 | 560 |
MS.gene32487.t1 | MTR_1g043240 | 83.946 | 299 | 47 | 1 | 16 | 314 | 1 | 298 | 0.0 | 531 |
MS.gene32487.t1 | MTR_1g074880 | 81.126 | 302 | 56 | 1 | 16 | 317 | 1 | 301 | 0.0 | 524 |
MS.gene32487.t1 | MTR_1g074880 | 81.126 | 302 | 56 | 1 | 16 | 317 | 1 | 301 | 0.0 | 523 |
MS.gene32487.t1 | MTR_8g098980 | 78.105 | 306 | 67 | 0 | 16 | 321 | 1 | 306 | 0.0 | 521 |
MS.gene32487.t1 | MTR_8g005010 | 78.276 | 290 | 62 | 1 | 21 | 310 | 4 | 292 | 5.12e-175 | 486 |
MS.gene32487.t1 | MTR_7g112870 | 76.589 | 299 | 67 | 1 | 16 | 314 | 5 | 300 | 3.13e-171 | 478 |
MS.gene32487.t1 | MTR_1g079950 | 91.322 | 242 | 21 | 0 | 76 | 317 | 34 | 275 | 4.20e-171 | 477 |
MS.gene32487.t1 | MTR_1g074880 | 83.128 | 243 | 41 | 0 | 75 | 317 | 4 | 246 | 1.58e-157 | 441 |
MS.gene32487.t1 | MTR_1g074880 | 83.128 | 243 | 41 | 0 | 75 | 317 | 4 | 246 | 2.08e-157 | 441 |
MS.gene32487.t1 | MTR_8g062430 | 45.763 | 295 | 153 | 3 | 23 | 316 | 6 | 294 | 4.29e-95 | 284 |
MS.gene32487.t1 | MTR_5g093990 | 44.108 | 297 | 160 | 2 | 21 | 316 | 1 | 292 | 2.08e-94 | 282 |
MS.gene32487.t1 | MTR_7g107310 | 44.595 | 296 | 157 | 3 | 20 | 314 | 10 | 299 | 4.07e-94 | 282 |
MS.gene32487.t1 | MTR_5g037200 | 46.102 | 295 | 152 | 3 | 23 | 316 | 6 | 294 | 4.60e-94 | 281 |
MS.gene32487.t1 | MTR_8g085610 | 46.350 | 274 | 145 | 2 | 42 | 314 | 22 | 294 | 6.01e-92 | 276 |
MS.gene32487.t1 | MTR_1g039380 | 42.657 | 286 | 161 | 3 | 33 | 316 | 7 | 291 | 8.95e-90 | 270 |
MS.gene32487.t1 | MTR_8g085610 | 45.556 | 270 | 145 | 2 | 46 | 314 | 2 | 270 | 1.21e-89 | 270 |
MS.gene32487.t1 | MTR_1g039380 | 43.939 | 264 | 145 | 3 | 55 | 316 | 5 | 267 | 5.16e-87 | 263 |
MS.gene32487.t1 | MTR_2g087530 | 46.006 | 313 | 153 | 6 | 14 | 310 | 521 | 833 | 6.80e-83 | 268 |
MS.gene32487.t1 | MTR_2g087530 | 46.006 | 313 | 153 | 6 | 14 | 310 | 634 | 946 | 2.08e-82 | 269 |
MS.gene32487.t1 | MTR_1g089370 | 48.239 | 284 | 131 | 6 | 42 | 310 | 548 | 830 | 2.21e-81 | 264 |
MS.gene32487.t1 | MTR_4g050540 | 45.687 | 313 | 154 | 6 | 14 | 310 | 639 | 951 | 4.65e-81 | 265 |
MS.gene32487.t1 | MTR_3g452710 | 40.476 | 294 | 164 | 5 | 8 | 295 | 158 | 446 | 7.35e-71 | 228 |
MS.gene32487.t1 | MTR_3g452710 | 40.476 | 294 | 164 | 5 | 8 | 295 | 225 | 513 | 4.04e-70 | 228 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 173 | 7 | 2 | 295 | 63 | 365 | 2.11e-67 | 216 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 173 | 7 | 2 | 295 | 133 | 435 | 1.57e-66 | 216 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 173 | 7 | 2 | 295 | 172 | 474 | 3.22e-66 | 216 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 173 | 7 | 2 | 295 | 162 | 464 | 3.25e-66 | 216 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 173 | 7 | 2 | 295 | 172 | 474 | 3.63e-66 | 216 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 172 | 8 | 2 | 295 | 133 | 434 | 2.59e-65 | 213 |
MS.gene32487.t1 | MTR_2g100130 | 37.662 | 308 | 172 | 8 | 2 | 295 | 172 | 473 | 5.46e-65 | 213 |
MS.gene32487.t1 | MTR_2g100130 | 37.919 | 298 | 166 | 7 | 2 | 285 | 172 | 464 | 1.44e-64 | 212 |
MS.gene32487.t1 | MTR_2g100160 | 43.548 | 248 | 132 | 5 | 55 | 295 | 138 | 384 | 1.89e-60 | 199 |
MS.gene32487.t1 | MTR_5g037200 | 51.534 | 163 | 78 | 1 | 42 | 203 | 20 | 182 | 9.99e-58 | 186 |
MS.gene32487.t1 | MTR_8g072600 | 31.613 | 310 | 151 | 9 | 69 | 317 | 129 | 438 | 2.64e-36 | 136 |
MS.gene32487.t1 | MTR_8g072600 | 33.184 | 223 | 114 | 5 | 68 | 255 | 128 | 350 | 4.84e-29 | 114 |
MS.gene32487.t1 | MTR_2g099710 | 28.896 | 308 | 167 | 13 | 47 | 313 | 211 | 507 | 2.83e-21 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32487.t1 | AT2G39840 | 91.262 | 309 | 27 | 0 | 15 | 323 | 13 | 321 | 0.0 | 599 |
MS.gene32487.t1 | AT5G59160 | 82.132 | 319 | 49 | 2 | 1 | 318 | 1 | 312 | 0.0 | 550 |
MS.gene32487.t1 | AT5G59160 | 82.132 | 319 | 49 | 2 | 1 | 318 | 1 | 312 | 0.0 | 550 |
MS.gene32487.t1 | AT5G59160 | 82.132 | 319 | 49 | 2 | 1 | 318 | 1 | 312 | 0.0 | 550 |
MS.gene32487.t1 | AT2G29400 | 81.329 | 316 | 55 | 3 | 6 | 318 | 4 | 318 | 0.0 | 541 |
MS.gene32487.t1 | AT3G46820 | 78.616 | 318 | 60 | 2 | 1 | 317 | 1 | 311 | 0.0 | 531 |
MS.gene32487.t1 | AT1G64040 | 79.801 | 302 | 61 | 0 | 16 | 317 | 1 | 302 | 0.0 | 519 |
MS.gene32487.t1 | AT4G11240 | 76.623 | 308 | 72 | 0 | 16 | 323 | 1 | 308 | 0.0 | 513 |
MS.gene32487.t1 | AT5G43380 | 77.850 | 307 | 67 | 1 | 16 | 322 | 1 | 306 | 1.82e-180 | 502 |
MS.gene32487.t1 | AT5G43380 | 77.850 | 307 | 67 | 1 | 16 | 322 | 1 | 306 | 5.14e-180 | 500 |
MS.gene32487.t1 | AT5G43380 | 77.850 | 307 | 67 | 1 | 16 | 322 | 1 | 306 | 1.27e-179 | 499 |
MS.gene32487.t1 | AT5G27840 | 77.104 | 297 | 65 | 1 | 15 | 311 | 8 | 301 | 2.82e-174 | 486 |
MS.gene32487.t1 | AT5G27840 | 77.104 | 297 | 65 | 1 | 15 | 311 | 8 | 301 | 3.61e-174 | 486 |
MS.gene32487.t1 | AT5G27840 | 77.104 | 297 | 65 | 1 | 15 | 311 | 8 | 301 | 3.61e-174 | 486 |
MS.gene32487.t1 | AT5G27840 | 77.104 | 297 | 65 | 1 | 15 | 311 | 8 | 301 | 5.46e-174 | 485 |
MS.gene32487.t1 | AT3G05580 | 76.768 | 297 | 66 | 1 | 15 | 311 | 8 | 301 | 5.93e-170 | 474 |
MS.gene32487.t1 | AT3G05580 | 75.806 | 248 | 57 | 1 | 15 | 262 | 8 | 252 | 3.86e-137 | 389 |
MS.gene32487.t1 | AT5G55260 | 46.099 | 282 | 151 | 1 | 42 | 322 | 17 | 298 | 1.04e-96 | 288 |
MS.gene32487.t1 | AT1G10430 | 45.763 | 295 | 153 | 3 | 23 | 316 | 6 | 294 | 1.33e-95 | 285 |
MS.gene32487.t1 | AT1G10430 | 45.763 | 295 | 153 | 3 | 23 | 316 | 6 | 294 | 1.33e-95 | 285 |
MS.gene32487.t1 | AT4G26720 | 42.761 | 297 | 164 | 2 | 21 | 316 | 1 | 292 | 2.34e-95 | 285 |
MS.gene32487.t1 | AT2G42500 | 47.445 | 274 | 142 | 2 | 42 | 314 | 27 | 299 | 5.95e-95 | 284 |
MS.gene32487.t1 | AT1G69960 | 47.101 | 276 | 144 | 2 | 42 | 316 | 21 | 295 | 3.79e-94 | 282 |
MS.gene32487.t1 | AT3G58500 | 46.715 | 274 | 144 | 2 | 42 | 314 | 27 | 299 | 2.40e-93 | 280 |
MS.gene32487.t1 | AT1G59830 | 44.746 | 295 | 156 | 3 | 23 | 316 | 6 | 294 | 6.48e-93 | 279 |
MS.gene32487.t1 | AT3G19980 | 42.657 | 286 | 161 | 3 | 33 | 316 | 7 | 291 | 3.49e-89 | 269 |
MS.gene32487.t1 | AT1G50370 | 42.308 | 286 | 162 | 3 | 33 | 316 | 7 | 291 | 3.85e-89 | 269 |
MS.gene32487.t1 | AT5G55260 | 40.248 | 323 | 151 | 2 | 42 | 322 | 17 | 339 | 4.11e-88 | 268 |
MS.gene32487.t1 | AT4G03080 | 45.031 | 322 | 159 | 7 | 6 | 310 | 512 | 832 | 3.19e-83 | 269 |
MS.gene32487.t1 | AT1G59830 | 47.177 | 248 | 124 | 3 | 23 | 269 | 6 | 247 | 7.69e-81 | 246 |
MS.gene32487.t1 | AT2G27210 | 48.029 | 279 | 131 | 5 | 46 | 310 | 674 | 952 | 7.07e-80 | 262 |
MS.gene32487.t1 | AT2G27210 | 48.029 | 279 | 131 | 5 | 46 | 310 | 679 | 957 | 7.45e-80 | 262 |
MS.gene32487.t1 | AT1G03445 | 47.887 | 284 | 131 | 8 | 42 | 310 | 476 | 757 | 1.40e-79 | 258 |
MS.gene32487.t1 | AT1G03445 | 47.887 | 284 | 131 | 8 | 42 | 310 | 476 | 757 | 1.54e-79 | 258 |
MS.gene32487.t1 | AT1G08420 | 45.048 | 313 | 156 | 6 | 14 | 310 | 656 | 968 | 3.65e-79 | 260 |
MS.gene32487.t1 | AT1G08420 | 45.048 | 313 | 156 | 6 | 14 | 310 | 651 | 963 | 4.04e-79 | 260 |
MS.gene32487.t1 | AT2G42500 | 48.869 | 221 | 111 | 2 | 95 | 314 | 33 | 252 | 8.59e-75 | 231 |
MS.gene32487.t1 | AT2G42810 | 41.156 | 294 | 162 | 5 | 8 | 295 | 160 | 448 | 3.28e-69 | 223 |
MS.gene32487.t1 | AT2G42810 | 41.156 | 294 | 162 | 5 | 8 | 295 | 160 | 448 | 3.28e-69 | 223 |
MS.gene32487.t1 | AT2G42810 | 41.156 | 294 | 162 | 5 | 8 | 295 | 160 | 448 | 3.28e-69 | 223 |
MS.gene32487.t1 | AT2G42810 | 41.156 | 294 | 162 | 5 | 8 | 295 | 214 | 502 | 8.28e-69 | 224 |
MS.gene32487.t1 | AT2G42810 | 41.156 | 294 | 162 | 5 | 8 | 295 | 213 | 501 | 8.64e-69 | 224 |
MS.gene32487.t1 | AT2G42500 | 45.578 | 147 | 76 | 3 | 42 | 184 | 27 | 173 | 8.28e-43 | 146 |
MS.gene32487.t1 | AT2G42500 | 45.752 | 153 | 77 | 4 | 42 | 190 | 27 | 177 | 1.38e-42 | 145 |
MS.gene32487.t1 | AT2G42500 | 47.482 | 139 | 69 | 3 | 42 | 176 | 27 | 165 | 4.89e-42 | 144 |
MS.gene32487.t1 | AT5G63870 | 30.744 | 309 | 151 | 11 | 71 | 317 | 79 | 386 | 2.33e-32 | 124 |
MS.gene32487.t1 | AT5G63870 | 30.744 | 309 | 151 | 11 | 71 | 317 | 79 | 386 | 2.33e-32 | 124 |
MS.gene32487.t1 | AT5G63870 | 33.032 | 221 | 111 | 7 | 71 | 255 | 79 | 298 | 1.75e-26 | 106 |
MS.gene32487.t1 | AT1G48120 | 29.195 | 298 | 151 | 8 | 47 | 284 | 628 | 925 | 2.17e-26 | 110 |
MS.gene32487.t1 | AT5G10900 | 29.851 | 268 | 140 | 9 | 68 | 293 | 222 | 483 | 2.12e-20 | 92.4 |
MS.gene32487.t1 | AT5G10900 | 29.851 | 268 | 140 | 9 | 68 | 293 | 222 | 483 | 2.73e-20 | 92.0 |
MS.gene32487.t1 | AT5G10900 | 29.851 | 268 | 140 | 9 | 68 | 293 | 222 | 483 | 2.99e-20 | 91.7 |
Find 78 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTCATGATTTCCCCTTAAA+AGG | 0.188046 | 5.1:-63155530 | None:intergenic |
TTCCCCTGACCTCACAAATT+TGG | 0.198743 | 5.1:+63155701 | MS.gene32487:CDS |
GCTTCAAGTTCAAGCAAATT+AGG | 0.250559 | 5.1:-63153784 | None:intergenic |
GATAACTGAACTTGCTTTCC+AGG | 0.253465 | 5.1:-63153706 | None:intergenic |
AAAGCCATATATCCTATTAA+TGG | 0.271939 | 5.1:-63155559 | None:intergenic |
TTGTTAAGGCTCTTTGAGTA+TGG | 0.289359 | 5.1:+63155387 | MS.gene32487:CDS |
GACGAGGCAGATTCCGGATT+TGG | 0.290635 | 5.1:-63155725 | None:intergenic |
AATATACCACAAATCTTAAT+AGG | 0.294724 | 5.1:-63153808 | None:intergenic |
TCTCTGCAGGCTTAAGAATC+TGG | 0.306156 | 5.1:-63156172 | None:intergenic |
GCTTCCATTAATAGGATATA+TGG | 0.311963 | 5.1:+63155555 | MS.gene32487:CDS |
ATGAGTGTGCTTCCATTAAT+AGG | 0.319656 | 5.1:+63155547 | MS.gene32487:CDS |
TCAAATTCACCACAGTAGTT+TGG | 0.333938 | 5.1:-63156101 | None:intergenic |
AGAGGAGTGTCCTACACTTT+TGG | 0.354737 | 5.1:+63155834 | MS.gene32487:CDS |
GTTTGCTCTGTGATCTGCTT+TGG | 0.359915 | 5.1:+63155769 | MS.gene32487:CDS |
CCTTATTTGTCGTGCTCATC+AGG | 0.365242 | 5.1:+63155899 | MS.gene32487:CDS |
TGGTCCAAATTTGTGAGGTC+AGG | 0.377025 | 5.1:-63155705 | None:intergenic |
GCTTTCCAGGTCGAGATAAT+CGG | 0.389712 | 5.1:-63153693 | None:intergenic |
GAACTGGACGAGGCAGATTC+CGG | 0.393173 | 5.1:-63155731 | None:intergenic |
ACCTGAGCTGGTTGCGGTTG+TGG | 0.398008 | 5.1:-63153622 | None:intergenic |
TGGTAAAGATGTGAAGGGTT+GGG | 0.416189 | 5.1:+63155800 | MS.gene32487:CDS |
ATAAGCAAGCAAAAGGCATA+TGG | 0.417221 | 5.1:-63155481 | None:intergenic |
GAAGGTTTAACGTGAGGCTT+TGG | 0.417843 | 5.1:+63155598 | MS.gene32487:CDS |
GAAGCTCCTATTAAGATTTG+TGG | 0.437377 | 5.1:+63153802 | MS.gene32487:CDS |
GGCAGTACAGTGATTTGTTA+AGG | 0.439229 | 5.1:+63155373 | MS.gene32487:CDS |
TGTTAAGGCTCTTTGAGTAT+GGG | 0.442492 | 5.1:+63155388 | MS.gene32487:CDS |
TCACAAATTTGGACCAAATC+CGG | 0.443187 | 5.1:+63155712 | MS.gene32487:CDS |
CCTGATGAGCACGACAAATA+AGG | 0.445699 | 5.1:-63155899 | None:intergenic |
TTTCTACAGGTTGTAGAGGA+TGG | 0.456508 | 5.1:+63156032 | MS.gene32487:intron |
AGCAAACCAGTGTCGGGAAT+AGG | 0.469815 | 5.1:-63155753 | None:intergenic |
GTTAAGGCTCTTTGAGTATG+GGG | 0.473187 | 5.1:+63155389 | MS.gene32487:CDS |
CCAGTGTCGGGAATAGGAAC+TGG | 0.483717 | 5.1:-63155747 | None:intergenic |
GGTAAAGATGTGAAGGGTTG+GGG | 0.485097 | 5.1:+63155801 | MS.gene32487:CDS |
ATCGGACCTCCGTGAGTCGC+CGG | 0.486009 | 5.1:-63153675 | None:intergenic |
CGGTGTTGGATGACATTATC+CGG | 0.486367 | 5.1:+63153656 | MS.gene32487:CDS |
CAACCCTTCACATCTTTACC+AGG | 0.486888 | 5.1:-63155798 | None:intergenic |
GATCTGCTTTGGTCTGATCC+TGG | 0.488507 | 5.1:+63155780 | MS.gene32487:CDS |
CTGGTAAAGATGTGAAGGGT+TGG | 0.489081 | 5.1:+63155799 | MS.gene32487:CDS |
ACCACAACCGCAACCAGCTC+AGG | 0.495833 | 5.1:+63153621 | MS.gene32487:CDS |
TCACAGAGCAAACCAGTGTC+GGG | 0.498739 | 5.1:-63155759 | None:intergenic |
TCAATCACCTGAGCTGGTTG+CGG | 0.503443 | 5.1:-63153628 | None:intergenic |
GGTTGGGGCATGAATGATAG+AGG | 0.507092 | 5.1:+63155816 | MS.gene32487:CDS |
TTCTACAGGTTGTAGAGGAT+GGG | 0.512314 | 5.1:+63156033 | MS.gene32487:intron |
GGTGATTGATGAGGCGGTGT+TGG | 0.514805 | 5.1:+63153642 | MS.gene32487:CDS |
GCCTCATCAATCACCTGAGC+TGG | 0.516629 | 5.1:-63153634 | None:intergenic |
GGTCCAAATTTGTGAGGTCA+GGG | 0.517305 | 5.1:-63155704 | None:intergenic |
GGTATGAATTCTTTGCAGAC+AGG | 0.527480 | 5.1:+63156054 | MS.gene32487:CDS |
TGTGGTGAATTTGACAATGC+TGG | 0.536157 | 5.1:+63156110 | MS.gene32487:CDS |
GCAGTTAAAAGATTCTGTAA+AGG | 0.537513 | 5.1:-63155625 | None:intergenic |
ATCACAGAGCAAACCAGTGT+CGG | 0.537927 | 5.1:-63155760 | None:intergenic |
CCAGTTCCTATTCCCGACAC+TGG | 0.551030 | 5.1:+63155747 | MS.gene32487:CDS |
TTAAGGCTCTTTGAGTATGG+GGG | 0.557869 | 5.1:+63155390 | MS.gene32487:CDS |
TGATCCTGGTAAAGATGTGA+AGG | 0.568216 | 5.1:+63155794 | MS.gene32487:CDS |
TAGGGGACTATGTCGATCGT+GGG | 0.581599 | 5.1:+63155442 | MS.gene32487:CDS |
TTAGGGGACTATGTCGATCG+TGG | 0.584691 | 5.1:+63155441 | MS.gene32487:CDS |
AGCTCAGGTGATTGATGAGG+CGG | 0.591360 | 5.1:+63153636 | MS.gene32487:CDS |
AAAATTCAGCCACCTTATCA+GGG | 0.604962 | 5.1:-63155857 | None:intergenic |
AATCTTTCTACAGGTTGTAG+AGG | 0.609590 | 5.1:+63156028 | MS.gene32487:intron |
CTTATCAGGGCCAAAAGTGT+AGG | 0.611607 | 5.1:-63155844 | None:intergenic |
TCATCTATAAGAGCTGCCAC+AGG | 0.614413 | 5.1:-63155651 | None:intergenic |
GAGAAAATATTGTGCATGCA+TGG | 0.617309 | 5.1:+63155672 | MS.gene32487:CDS |
GTCCAAATTTGTGAGGTCAG+GGG | 0.618457 | 5.1:-63155703 | None:intergenic |
AAGAGATAATTAGACTGAGG+AGG | 0.620172 | 5.1:-63155417 | None:intergenic |
GGATTTGGTCCAAATTTGTG+AGG | 0.622555 | 5.1:-63155710 | None:intergenic |
TCGGGAATAGGAACTGGACG+AGG | 0.628912 | 5.1:-63155741 | None:intergenic |
TGAGCTGGTTGCGGTTGTGG+TGG | 0.632704 | 5.1:-63153619 | None:intergenic |
TTTATGATGAATGTAAGCGA+AGG | 0.637254 | 5.1:+63155580 | MS.gene32487:CDS |
TGACATTATCCGGCGACTCA+CGG | 0.637466 | 5.1:+63153666 | MS.gene32487:CDS |
CTATAAGAGCTGCCACAGGA+AGG | 0.639489 | 5.1:-63155647 | None:intergenic |
TGATGTCAAACAAGATGTGA+TGG | 0.642691 | 5.1:+63156210 | MS.gene32487:CDS |
GAGGTCCGATTATCTCGACC+TGG | 0.644071 | 5.1:+63153688 | MS.gene32487:CDS |
TGCAGGCTTAAGAATCTGGA+AGG | 0.647935 | 5.1:-63156168 | None:intergenic |
GTAAGCGAAGGTTTAACGTG+AGG | 0.650857 | 5.1:+63155592 | MS.gene32487:CDS |
TCAGAATCAATGAGTGCACA+AGG | 0.654048 | 5.1:+63153592 | None:intergenic |
ACCAGCTCAGGTGATTGATG+AGG | 0.656427 | 5.1:+63153633 | MS.gene32487:CDS |
TGCTGGTGCAATGATGAGTG+TGG | 0.682861 | 5.1:+63156127 | MS.gene32487:CDS |
GATCCTGGTAAAGATGTGAA+GGG | 0.727062 | 5.1:+63155795 | MS.gene32487:CDS |
AAAATATTGTGCATGCATGG+TGG | 0.745802 | 5.1:+63155675 | MS.gene32487:CDS |
CATTATCCGGCGACTCACGG+AGG | 0.795356 | 5.1:+63153669 | MS.gene32487:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAAAAGATAAGAAAAA+AGG | - | chr5.1:63154225-63154244 | None:intergenic | 10.0% |
!!! | AAATATAAAAAGTATCAAAT+TGG | - | chr5.1:63154257-63154276 | None:intergenic | 10.0% |
!!! | AATATAAAAAGTATCAAATT+GGG | - | chr5.1:63154256-63154275 | None:intergenic | 10.0% |
!!! | ATTTGATACTTTTTATATTT+AGG | + | chr5.1:63154257-63154276 | MS.gene32487:intron | 10.0% |
!!! | TGGTTTATAATATATTTTTA+CGG | + | chr5.1:63154403-63154422 | MS.gene32487:intron | 10.0% |
!!! | TTTGATACTTTTTATATTTA+GGG | + | chr5.1:63154258-63154277 | MS.gene32487:intron | 10.0% |
!!! | TTTTAAATATTCATGTTTTT+GGG | + | chr5.1:63154182-63154201 | MS.gene32487:intron | 10.0% |
!!! | TTTTTAAATATTCATGTTTT+TGG | + | chr5.1:63154181-63154200 | MS.gene32487:intron | 10.0% |
!! | AAAAACAAAAAACATCAAAA+TGG | - | chr5.1:63153860-63153879 | None:intergenic | 15.0% |
!! | AAAACAAAAAACATCAAAAT+GGG | - | chr5.1:63153859-63153878 | None:intergenic | 15.0% |
!! | CTAAAATTGAAAATATCAAA+TGG | - | chr5.1:63154501-63154520 | None:intergenic | 15.0% |
!! | TGAAAAATACAAGATAAAAA+AGG | - | chr5.1:63154472-63154491 | None:intergenic | 15.0% |
!! | TGAATAATAAAATAGAATGT+GGG | + | chr5.1:63154935-63154954 | MS.gene32487:intron | 15.0% |
!! | TTGAATAATAAAATAGAATG+TGG | + | chr5.1:63154934-63154953 | MS.gene32487:intron | 15.0% |
!!! | AATTGAATGTACTATTTTAT+TGG | + | chr5.1:63155131-63155150 | MS.gene32487:intron | 15.0% |
!!! | ATATAAAAAGTATCAAATTG+GGG | - | chr5.1:63154255-63154274 | None:intergenic | 15.0% |
!!! | CTAGATATTTTTTTAACTTT+TGG | + | chr5.1:63154683-63154702 | MS.gene32487:intron | 15.0% |
!!! | TTTAATTTGATTGATTAACA+AGG | + | chr5.1:63153992-63154011 | MS.gene32487:intron | 15.0% |
!!! | TTTGATGTTTTTTGTTTTTA+GGG | + | chr5.1:63153861-63153880 | MS.gene32487:intron | 15.0% |
!!! | TTTTAAACATTCATGTTTTT+GGG | + | chr5.1:63154442-63154461 | MS.gene32487:intron | 15.0% |
!!! | TTTTGATGTTTTTTGTTTTT+AGG | + | chr5.1:63153860-63153879 | MS.gene32487:intron | 15.0% |
!!! | TTTTTAAACATTCATGTTTT+TGG | + | chr5.1:63154441-63154460 | MS.gene32487:intron | 15.0% |
!!! | TTTTTAATGTTGATGTTTTT+GGG | + | chr5.1:63154295-63154314 | MS.gene32487:intron | 15.0% |
!!! | TTTTTTAATGTTGATGTTTT+TGG | + | chr5.1:63154294-63154313 | MS.gene32487:intron | 15.0% |
!! | AAACAAAAAACATCAAAATG+GGG | - | chr5.1:63153858-63153877 | None:intergenic | 20.0% |
!! | AATATACCACAAATCTTAAT+AGG | - | chr5.1:63153811-63153830 | None:intergenic | 20.0% |
!! | AATATACCCTAAAATTCAAA+AGG | - | chr5.1:63154897-63154916 | None:intergenic | 20.0% |
!! | ATATGCCTTAAAAACTAAAA+GGG | - | chr5.1:63154964-63154983 | None:intergenic | 20.0% |
!! | TATATGCCTTAAAAACTAAA+AGG | - | chr5.1:63154965-63154984 | None:intergenic | 20.0% |
!!! | AAAAATTGGTTTATCCTTTT+AGG | + | chr5.1:63154779-63154798 | MS.gene32487:intron | 20.0% |
!!! | AAAATTGGTTTATCCTTTTA+GGG | + | chr5.1:63154780-63154799 | MS.gene32487:intron | 20.0% |
!!! | AATTTGGAGCTTTTAATTTT+AGG | + | chr5.1:63154086-63154105 | MS.gene32487:intron | 20.0% |
!!! | AGTCTAATTATCTCTTTTTA+GGG | + | chr5.1:63155424-63155443 | MS.gene32487:CDS | 20.0% |
!!! | ATTTGGAGCTTTTAATTTTA+GGG | + | chr5.1:63154087-63154106 | MS.gene32487:intron | 20.0% |
!!! | GGGTTTAAAATACATTTTTA+GGG | + | chr5.1:63154149-63154168 | MS.gene32487:intron | 20.0% |
!!! | GTATATTTGATTGATTTGTA+GGG | + | chr5.1:63154747-63154766 | MS.gene32487:intron | 20.0% |
!!! | TGAAAACTTTTTCCTTTTAA+GGG | + | chr5.1:63155518-63155537 | MS.gene32487:CDS | 20.0% |
!!! | TGGTTGAACATTTATTTTTA+GGG | + | chr5.1:63154646-63154665 | MS.gene32487:intron | 20.0% |
!!! | TTAGAACCTTTTGAATTTTA+GGG | + | chr5.1:63154888-63154907 | MS.gene32487:intron | 20.0% |
!!! | TTTGAATTTTAGGGTATATT+TGG | + | chr5.1:63154897-63154916 | MS.gene32487:intron | 20.0% |
!!! | TTTTGGGTATCTTAATTTTT+GGG | + | chr5.1:63154198-63154217 | MS.gene32487:intron | 20.0% |
!!! | TTTTTAAGGCATATAAAGTT+TGG | + | chr5.1:63154970-63154989 | MS.gene32487:intron | 20.0% |
!!! | TTTTTAATGTTCATGCTTTT+GGG | + | chr5.1:63154046-63154065 | MS.gene32487:intron | 20.0% |
!!! | TTTTTGGGTATCTTAATTTT+TGG | + | chr5.1:63154197-63154216 | MS.gene32487:intron | 20.0% |
!!! | TTTTTTAATGTTCATGCTTT+TGG | + | chr5.1:63154045-63154064 | MS.gene32487:intron | 20.0% |
!!! | TTTTTTTTACGAAGGTTTTA+AGG | + | chr5.1:63153965-63153984 | MS.gene32487:intron | 20.0% |
! | AAAAAGAGATAATTAGACTG+AGG | - | chr5.1:63155423-63155442 | None:intergenic | 25.0% |
! | AAAGCCATATATCCTATTAA+TGG | - | chr5.1:63155562-63155581 | None:intergenic | 25.0% |
! | AAATATACGCTAAAACTGAA+AGG | - | chr5.1:63154735-63154754 | None:intergenic | 25.0% |
! | AAGGATTGAAAAAGAAAATG+TGG | + | chr5.1:63154011-63154030 | MS.gene32487:intron | 25.0% |
! | TAGGGATTGAAGAAAAAAAT+TGG | + | chr5.1:63154765-63154784 | MS.gene32487:intron | 25.0% |
!! | AATGTACTATTTTATTGGTC+TGG | + | chr5.1:63155136-63155155 | MS.gene32487:intron | 25.0% |
!! | CAGTCTAATTATCTCTTTTT+AGG | + | chr5.1:63155423-63155442 | MS.gene32487:CDS | 25.0% |
!! | CTTAAAAGGAAAAAGTTTTC+AGG | - | chr5.1:63155519-63155538 | None:intergenic | 25.0% |
!! | GTCTAATTATCTCTTTTTAG+GGG | + | chr5.1:63155425-63155444 | MS.gene32487:CDS | 25.0% |
!! | GTTAGAACCTTTTGAATTTT+AGG | + | chr5.1:63154887-63154906 | MS.gene32487:intron | 25.0% |
!! | TGATTTTATAAGCAAGCAAA+AGG | - | chr5.1:63155491-63155510 | None:intergenic | 25.0% |
!! | TGTTTAATGTTGATGCTTTT+AGG | + | chr5.1:63154538-63154557 | MS.gene32487:intron | 25.0% |
!! | TTTTACCTTCTTTGTGAAAA+AGG | + | chr5.1:63155962-63155981 | MS.gene32487:intron | 25.0% |
!!! | AGTTTCAAGCTTTTAGTTTT+AGG | + | chr5.1:63154579-63154598 | MS.gene32487:intron | 25.0% |
!!! | ATGCTTAATTTGTTGCAATT+TGG | + | chr5.1:63154070-63154089 | MS.gene32487:intron | 25.0% |
!!! | CGTATATTTGATTGATTTGT+AGG | + | chr5.1:63154746-63154765 | MS.gene32487:intron | 25.0% |
!!! | CTGAAAACTTTTTCCTTTTA+AGG | + | chr5.1:63155517-63155536 | MS.gene32487:CDS | 25.0% |
!!! | GAAAACTTTTTCCTTTTAAG+GGG | + | chr5.1:63155519-63155538 | MS.gene32487:CDS | 25.0% |
!!! | GGGGTTTAAAATACATTTTT+AGG | + | chr5.1:63154148-63154167 | MS.gene32487:intron | 25.0% |
!!! | GTATGTTTGATTTGATTGAT+TGG | + | chr5.1:63154359-63154378 | MS.gene32487:intron | 25.0% |
!!! | GTGGTTGAACATTTATTTTT+AGG | + | chr5.1:63154645-63154664 | MS.gene32487:intron | 25.0% |
!!! | GTGTATTTGATTTGATTGTT+GGG | + | chr5.1:63154109-63154128 | MS.gene32487:intron | 25.0% |
!!! | GTTTCAAGCTTTTAGTTTTA+GGG | + | chr5.1:63154580-63154599 | MS.gene32487:intron | 25.0% |
!!! | GTTTGAATCTTTTGGTTTTA+TGG | + | chr5.1:63154337-63154356 | MS.gene32487:intron | 25.0% |
!!! | TGTATTTGATTTGATTGTTG+GGG | + | chr5.1:63154110-63154129 | MS.gene32487:intron | 25.0% |
!!! | TTTAGTTGTTTCGTGATTTT+GGG | + | chr5.1:63153898-63153917 | MS.gene32487:intron | 25.0% |
!!! | TTTGATTTGATTGATTGGTA+GGG | + | chr5.1:63154364-63154383 | MS.gene32487:intron | 25.0% |
!!! | TTTGATTTGGTTGATTTGTA+GGG | + | chr5.1:63154607-63154626 | MS.gene32487:intron | 25.0% |
!!! | TTTGTTTTTAGGGTTTAGAA+TGG | + | chr5.1:63153871-63153890 | MS.gene32487:intron | 25.0% |
!!! | TTTTAGTTGTTTCGTGATTT+TGG | + | chr5.1:63153897-63153916 | MS.gene32487:intron | 25.0% |
CTAACTATATATGCCCTAAA+AGG | - | chr5.1:63154796-63154815 | None:intergenic | 30.0% | |
GCAGTTAAAAGATTCTGTAA+AGG | - | chr5.1:63155628-63155647 | None:intergenic | 30.0% | |
GCTTCCATTAATAGGATATA+TGG | + | chr5.1:63155555-63155574 | MS.gene32487:CDS | 30.0% | |
GTAATCTGTAATCTTTCTAC+AGG | + | chr5.1:63156019-63156038 | MS.gene32487:intron | 30.0% | |
GTATATTTGGTTGTTTGGTA+GGG | + | chr5.1:63154910-63154929 | MS.gene32487:intron | 30.0% | |
GTTAAAATTGAAATCCCTGT+TGG | + | chr5.1:63155163-63155182 | MS.gene32487:intron | 30.0% | |
TGTGTTGTGATTGAATTGAA+TGG | + | chr5.1:63155297-63155316 | MS.gene32487:intron | 30.0% | |
TTAAGGCATATAAAGTTTGG+AGG | + | chr5.1:63154973-63154992 | MS.gene32487:intron | 30.0% | |
TTAGGGTATATTTGGTTGTT+TGG | + | chr5.1:63154905-63154924 | MS.gene32487:intron | 30.0% | |
TTTATGATGAATGTAAGCGA+AGG | + | chr5.1:63155580-63155599 | MS.gene32487:CDS | 30.0% | |
! | AAATCCCTGTTTGAATTTTC+AGG | + | chr5.1:63155339-63155358 | MS.gene32487:intron | 30.0% |
! | AGACTTGTAGATTGTTGTTA+AGG | + | chr5.1:63155084-63155103 | MS.gene32487:intron | 30.0% |
! | TGTTGCAAGTTTGAATCTTT+TGG | + | chr5.1:63154329-63154348 | MS.gene32487:intron | 30.0% |
! | TTGATTTGATTGATTGGTAG+GGG | + | chr5.1:63154365-63154384 | MS.gene32487:intron | 30.0% |
! | TTTTGCAAGTTTGTAGCTTT+TGG | + | chr5.1:63153932-63153951 | MS.gene32487:intron | 30.0% |
!! | ACTATTTTATTGGTCTGGTA+TGG | + | chr5.1:63155141-63155160 | MS.gene32487:intron | 30.0% |
!! | CTAAACTTGTGTTGCTTTAA+TGG | + | chr5.1:63155985-63156004 | MS.gene32487:intron | 30.0% |
!! | GGTGTATTTGATTTGATTGT+TGG | + | chr5.1:63154108-63154127 | MS.gene32487:intron | 30.0% |
!! | GTTTGATTTGATTGATTGGT+AGG | + | chr5.1:63154363-63154382 | MS.gene32487:intron | 30.0% |
!! | GTTTGATTTGGTTGATTTGT+AGG | + | chr5.1:63154606-63154625 | MS.gene32487:intron | 30.0% |
!! | TAAAAAGTATCAAATTGGGG+TGG | - | chr5.1:63154252-63154271 | None:intergenic | 30.0% |
!! | TTTAGCCTTTTTCACAAAGA+AGG | - | chr5.1:63155970-63155989 | None:intergenic | 30.0% |
!!! | AATTTTCAGGTGACATTCAT+GGG | + | chr5.1:63155352-63155371 | MS.gene32487:intron | 30.0% |
!!! | AGTTTGTAGCTTTTGGTTTT+AGG | + | chr5.1:63153939-63153958 | MS.gene32487:intron | 30.0% |
!!! | CTTTTAGGGCATATATAGTT+AGG | + | chr5.1:63154794-63154813 | MS.gene32487:intron | 30.0% |
!!! | GGTTACCCTTTTAGTTTTTA+AGG | + | chr5.1:63154956-63154975 | MS.gene32487:intron | 30.0% |
!!! | GGTTATTTTTAAGTGTGTTG+TGG | + | chr5.1:63155105-63155124 | MS.gene32487:intron | 30.0% |
!!! | GTTTGTAGCTTTTGGTTTTA+GGG | + | chr5.1:63153940-63153959 | MS.gene32487:intron | 30.0% |
!!! | GTTTTAGGGTATGTTTGATT+TGG | + | chr5.1:63154594-63154613 | MS.gene32487:intron | 30.0% |
!!! | TTAGGGGTTTTTTTTTACGA+AGG | + | chr5.1:63153957-63153976 | MS.gene32487:intron | 30.0% |
!!! | TTTGTAGCTTTTGGTTTTAG+GGG | + | chr5.1:63153941-63153960 | MS.gene32487:intron | 30.0% |
AAAAAGAATGACACGAAGGA+GGG | - | chr5.1:63155946-63155965 | None:intergenic | 35.0% | |
AAAAATTCAGCCACCTTATC+AGG | - | chr5.1:63155861-63155880 | None:intergenic | 35.0% | |
AAAATATTGTGCATGCATGG+TGG | + | chr5.1:63155675-63155694 | MS.gene32487:CDS | 35.0% | |
AAAATTCAGCCACCTTATCA+GGG | - | chr5.1:63155860-63155879 | None:intergenic | 35.0% | |
AAGAGATAATTAGACTGAGG+AGG | - | chr5.1:63155420-63155439 | None:intergenic | 35.0% | |
AATCTTTCTACAGGTTGTAG+AGG | + | chr5.1:63156028-63156047 | MS.gene32487:intron | 35.0% | |
ACTCATGATTTCCCCTTAAA+AGG | - | chr5.1:63155533-63155552 | None:intergenic | 35.0% | |
AGGGATTGAAGAAGAAAATG+TGG | + | chr5.1:63154626-63154645 | MS.gene32487:intron | 35.0% | |
AGGTAAAAAGAATGACACGA+AGG | - | chr5.1:63155950-63155969 | None:intergenic | 35.0% | |
ATGAGTGTGCTTCCATTAAT+AGG | + | chr5.1:63155547-63155566 | MS.gene32487:CDS | 35.0% | |
GAAGCTCCTATTAAGATTTG+TGG | + | chr5.1:63153802-63153821 | MS.gene32487:CDS | 35.0% | |
GAGAAAATATTGTGCATGCA+TGG | + | chr5.1:63155672-63155691 | MS.gene32487:CDS | 35.0% | |
GGTATATTTGGTTGTTTGGT+AGG | + | chr5.1:63154909-63154928 | MS.gene32487:intron | 35.0% | |
GTCACCTGAAAATTCAAACA+GGG | - | chr5.1:63155346-63155365 | None:intergenic | 35.0% | |
TAAAAAGAATGACACGAAGG+AGG | - | chr5.1:63155947-63155966 | None:intergenic | 35.0% | |
TCAAATTCACCACAGTAGTT+TGG | - | chr5.1:63156104-63156123 | None:intergenic | 35.0% | |
TCACAAATTTGGACCAAATC+CGG | + | chr5.1:63155712-63155731 | MS.gene32487:CDS | 35.0% | |
TGGGGATTGAAGAAGAAAAT+GGG | + | chr5.1:63154128-63154147 | MS.gene32487:intron | 35.0% | |
TGTCACCTGAAAATTCAAAC+AGG | - | chr5.1:63155347-63155366 | None:intergenic | 35.0% | |
TGTGATTGAATTGAATGGTC+TGG | + | chr5.1:63155302-63155321 | MS.gene32487:intron | 35.0% | |
TGTTAAGGCTCTTTGAGTAT+GGG | + | chr5.1:63155388-63155407 | MS.gene32487:CDS | 35.0% | |
TTGAATTGAATGGTCTGGTA+TGG | + | chr5.1:63155307-63155326 | MS.gene32487:intron | 35.0% | |
TTGGGGATTGAAGAAGAAAA+TGG | + | chr5.1:63154127-63154146 | MS.gene32487:intron | 35.0% | |
TTGTTAAGGCTCTTTGAGTA+TGG | + | chr5.1:63155387-63155406 | MS.gene32487:CDS | 35.0% | |
! | AAATCCCTGTTGGAATTTTC+AGG | + | chr5.1:63155173-63155192 | MS.gene32487:intron | 35.0% |
! | ATAAGCAAGCAAAAGGCATA+TGG | - | chr5.1:63155484-63155503 | None:intergenic | 35.0% |
! | ATTTTTGACAAGGCATGACT+TGG | + | chr5.1:63155875-63155894 | MS.gene32487:CDS | 35.0% |
! | CAAAATGGGGTGTCAAAAAA+GGG | - | chr5.1:63153845-63153864 | None:intergenic | 35.0% |
! | GCTTCAAGTTCAAGCAAATT+AGG | - | chr5.1:63153787-63153806 | None:intergenic | 35.0% |
! | TCAAAATGGGGTGTCAAAAA+AGG | - | chr5.1:63153846-63153865 | None:intergenic | 35.0% |
!!! | AACTTTGTTTTCTTCTCTGC+AGG | - | chr5.1:63156188-63156207 | None:intergenic | 35.0% |
!!! | GAATTTTCAGGTGACATTCA+TGG | + | chr5.1:63155351-63155370 | MS.gene32487:intron | 35.0% |
GATCCTGGTAAAGATGTGAA+GGG | + | chr5.1:63155795-63155814 | MS.gene32487:CDS | 40.0% | |
GGGGATTGAAGAAGAAAATG+GGG | + | chr5.1:63154129-63154148 | MS.gene32487:intron | 40.0% | |
GGTATGAATTCTTTGCAGAC+AGG | + | chr5.1:63156054-63156073 | MS.gene32487:CDS | 40.0% | |
GTCACCTGAAAATTCCAACA+GGG | - | chr5.1:63155180-63155199 | None:intergenic | 40.0% | |
GTTAAGGCTCTTTGAGTATG+GGG | + | chr5.1:63155389-63155408 | MS.gene32487:CDS | 40.0% | |
TGATCCTGGTAAAGATGTGA+AGG | + | chr5.1:63155794-63155813 | MS.gene32487:CDS | 40.0% | |
TGGTAAAGATGTGAAGGGTT+GGG | + | chr5.1:63155800-63155819 | MS.gene32487:CDS | 40.0% | |
TGTCACCTGAAAATTCCAAC+AGG | - | chr5.1:63155181-63155200 | None:intergenic | 40.0% | |
TGTGGTGAATTTGACAATGC+TGG | + | chr5.1:63156110-63156129 | MS.gene32487:CDS | 40.0% | |
TTAAGGCTCTTTGAGTATGG+GGG | + | chr5.1:63155390-63155409 | MS.gene32487:CDS | 40.0% | |
TTCTACAGGTTGTAGAGGAT+GGG | + | chr5.1:63156033-63156052 | MS.gene32487:intron | 40.0% | |
TTTCTACAGGTTGTAGAGGA+TGG | + | chr5.1:63156032-63156051 | MS.gene32487:intron | 40.0% | |
! | AGGTGGCTGAATTTTTGACA+AGG | + | chr5.1:63155865-63155884 | MS.gene32487:CDS | 40.0% |
! | GATAACTGAACTTGCTTTCC+AGG | - | chr5.1:63153709-63153728 | None:intergenic | 40.0% |
! | GGATTTGGTCCAAATTTGTG+AGG | - | chr5.1:63155713-63155732 | None:intergenic | 40.0% |
! | TTTTCAGCTCCAAACTACTG+TGG | + | chr5.1:63156092-63156111 | MS.gene32487:CDS | 40.0% |
!! | AGACGTGTAGCTTGTTGTTA+AGG | + | chr5.1:63155263-63155282 | MS.gene32487:intron | 40.0% |
!! | ATCTTTTAACTGCCTTCCTG+TGG | + | chr5.1:63155635-63155654 | MS.gene32487:CDS | 40.0% |
!! | GGCAGTACAGTGATTTGTTA+AGG | + | chr5.1:63155373-63155392 | MS.gene32487:CDS | 40.0% |
ATCACAGAGCAAACCAGTGT+CGG | - | chr5.1:63155763-63155782 | None:intergenic | 45.0% | |
CAACCCTTCACATCTTTACC+AGG | - | chr5.1:63155801-63155820 | None:intergenic | 45.0% | |
CCTGATGAGCACGACAAATA+AGG | - | chr5.1:63155902-63155921 | None:intergenic | 45.0% | |
CTGGTAAAGATGTGAAGGGT+TGG | + | chr5.1:63155799-63155818 | MS.gene32487:CDS | 45.0% | |
GAAGGTTTAACGTGAGGCTT+TGG | + | chr5.1:63155598-63155617 | MS.gene32487:CDS | 45.0% | |
GCTTTCCAGGTCGAGATAAT+CGG | - | chr5.1:63153696-63153715 | None:intergenic | 45.0% | |
GGTAAAGATGTGAAGGGTTG+GGG | + | chr5.1:63155801-63155820 | MS.gene32487:CDS | 45.0% | |
GGTCCAAATTTGTGAGGTCA+GGG | - | chr5.1:63155707-63155726 | None:intergenic | 45.0% | |
GTAAGCGAAGGTTTAACGTG+AGG | + | chr5.1:63155592-63155611 | MS.gene32487:CDS | 45.0% | |
GTCCAAATTTGTGAGGTCAG+GGG | - | chr5.1:63155706-63155725 | None:intergenic | 45.0% | |
GTTTGCTCTGTGATCTGCTT+TGG | + | chr5.1:63155769-63155788 | MS.gene32487:CDS | 45.0% | |
TCATCTATAAGAGCTGCCAC+AGG | - | chr5.1:63155654-63155673 | None:intergenic | 45.0% | |
TCTCTGCAGGCTTAAGAATC+TGG | - | chr5.1:63156175-63156194 | None:intergenic | 45.0% | |
TGCAGGCTTAAGAATCTGGA+AGG | - | chr5.1:63156171-63156190 | None:intergenic | 45.0% | |
TGGTCCAAATTTGTGAGGTC+AGG | - | chr5.1:63155708-63155727 | None:intergenic | 45.0% | |
TTCCCCTGACCTCACAAATT+TGG | + | chr5.1:63155701-63155720 | MS.gene32487:CDS | 45.0% | |
! | CCTTATTTGTCGTGCTCATC+AGG | + | chr5.1:63155899-63155918 | MS.gene32487:CDS | 45.0% |
! | CGGTGTTGGATGACATTATC+CGG | + | chr5.1:63153656-63153675 | MS.gene32487:CDS | 45.0% |
! | CTACACTTTTGGCCCTGATA+AGG | + | chr5.1:63155845-63155864 | MS.gene32487:CDS | 45.0% |
! | CTTATCAGGGCCAAAAGTGT+AGG | - | chr5.1:63155847-63155866 | None:intergenic | 45.0% |
!! | AGGGGTTGATGAAGCAAATG+TGG | + | chr5.1:63154383-63154402 | MS.gene32487:intron | 45.0% |
!!! | AGAGGAGTGTCCTACACTTT+TGG | + | chr5.1:63155834-63155853 | MS.gene32487:CDS | 45.0% |
AAGAATGACACGAAGGAGGG+AGG | - | chr5.1:63155943-63155962 | None:intergenic | 50.0% | |
ACCAGCTCAGGTGATTGATG+AGG | + | chr5.1:63153633-63153652 | MS.gene32487:CDS | 50.0% | |
AGCTCAGGTGATTGATGAGG+CGG | + | chr5.1:63153636-63153655 | MS.gene32487:CDS | 50.0% | |
CTATAAGAGCTGCCACAGGA+AGG | - | chr5.1:63155650-63155669 | None:intergenic | 50.0% | |
GATCTGCTTTGGTCTGATCC+TGG | + | chr5.1:63155780-63155799 | MS.gene32487:CDS | 50.0% | |
GGTTGGGGCATGAATGATAG+AGG | + | chr5.1:63155816-63155835 | MS.gene32487:CDS | 50.0% | |
TAGGGGACTATGTCGATCGT+GGG | + | chr5.1:63155442-63155461 | MS.gene32487:CDS | 50.0% | |
TCAATCACCTGAGCTGGTTG+CGG | - | chr5.1:63153631-63153650 | None:intergenic | 50.0% | |
TCACAGAGCAAACCAGTGTC+GGG | - | chr5.1:63155762-63155781 | None:intergenic | 50.0% | |
TGACATTATCCGGCGACTCA+CGG | + | chr5.1:63153666-63153685 | MS.gene32487:CDS | 50.0% | |
TGCTGGTGCAATGATGAGTG+TGG | + | chr5.1:63156127-63156146 | MS.gene32487:CDS | 50.0% | |
TTAGGGGACTATGTCGATCG+TGG | + | chr5.1:63155441-63155460 | MS.gene32487:CDS | 50.0% | |
! | AGCAAACCAGTGTCGGGAAT+AGG | - | chr5.1:63155756-63155775 | None:intergenic | 50.0% |
! | CACTTTTGGCCCTGATAAGG+TGG | + | chr5.1:63155848-63155867 | MS.gene32487:CDS | 50.0% |
CCAGTTCCTATTCCCGACAC+TGG | + | chr5.1:63155747-63155766 | MS.gene32487:CDS | 55.0% | |
GAACTGGACGAGGCAGATTC+CGG | - | chr5.1:63155734-63155753 | None:intergenic | 55.0% | |
GACGAGGCAGATTCCGGATT+TGG | - | chr5.1:63155728-63155747 | None:intergenic | 55.0% | |
GAGGTCCGATTATCTCGACC+TGG | + | chr5.1:63153688-63153707 | MS.gene32487:CDS | 55.0% | |
GCCTCATCAATCACCTGAGC+TGG | - | chr5.1:63153637-63153656 | None:intergenic | 55.0% | |
GGTGATTGATGAGGCGGTGT+TGG | + | chr5.1:63153642-63153661 | MS.gene32487:CDS | 55.0% | |
TCGGGAATAGGAACTGGACG+AGG | - | chr5.1:63155744-63155763 | None:intergenic | 55.0% | |
! | CCAGTGTCGGGAATAGGAAC+TGG | - | chr5.1:63155750-63155769 | None:intergenic | 55.0% |
ACCACAACCGCAACCAGCTC+AGG | + | chr5.1:63153621-63153640 | MS.gene32487:CDS | 60.0% | |
ACCTGAGCTGGTTGCGGTTG+TGG | - | chr5.1:63153625-63153644 | None:intergenic | 60.0% | |
CATTATCCGGCGACTCACGG+AGG | + | chr5.1:63153669-63153688 | MS.gene32487:CDS | 60.0% | |
TGAGCTGGTTGCGGTTGTGG+TGG | - | chr5.1:63153622-63153641 | None:intergenic | 60.0% | |
ATCGGACCTCCGTGAGTCGC+CGG | - | chr5.1:63153678-63153697 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 63153601 | 63156229 | 63153601 | ID=MS.gene32487 |
chr5.1 | mRNA | 63153601 | 63156229 | 63153601 | ID=MS.gene32487.t1;Parent=MS.gene32487 |
chr5.1 | exon | 63153601 | 63153823 | 63153601 | ID=MS.gene32487.t1.exon1;Parent=MS.gene32487.t1 |
chr5.1 | CDS | 63153601 | 63153823 | 63153601 | ID=cds.MS.gene32487.t1;Parent=MS.gene32487.t1 |
chr5.1 | exon | 63155361 | 63155920 | 63155361 | ID=MS.gene32487.t1.exon2;Parent=MS.gene32487.t1 |
chr5.1 | CDS | 63155361 | 63155920 | 63155361 | ID=cds.MS.gene32487.t1;Parent=MS.gene32487.t1 |
chr5.1 | exon | 63156041 | 63156229 | 63156041 | ID=MS.gene32487.t1.exon3;Parent=MS.gene32487.t1 |
chr5.1 | CDS | 63156041 | 63156229 | 63156041 | ID=cds.MS.gene32487.t1;Parent=MS.gene32487.t1 |
Gene Sequence |
Protein sequence |