Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88304.t1 | XP_013455406.1 | 96.8 | 905 | 29 | 0 | 1 | 905 | 155 | 1059 | 0.00E+00 | 1618.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88304.t1 | Q9FII7 | 53.1 | 907 | 422 | 2 | 1 | 905 | 152 | 1057 | 1.4e-252 | 874.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88304.t1 | A0A072UIF4 | 96.8 | 905 | 29 | 0 | 1 | 905 | 155 | 1059 | 0.0e+00 | 1618.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88304 | 0.837545 | 4.88E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene88304 | 0.805947 | 1.04E-49 | -1.69E-46 |
| MS.gene049190 | MS.gene88304 | 0.815747 | 7.89E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene88304 | 0.846272 | 2.41E-59 | -1.69E-46 |
| MS.gene049711 | MS.gene88304 | 0.812853 | 3.44E-51 | -1.69E-46 |
| MS.gene049770 | MS.gene88304 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene88304 | 0.828686 | 7.83E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene88304 | 0.851225 | 1.02E-60 | -1.69E-46 |
| MS.gene050020 | MS.gene88304 | 0.815083 | 1.11E-51 | -1.69E-46 |
| MS.gene050241 | MS.gene88304 | 0.80221 | 6.25E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene88304 | 0.841023 | 6.11E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene88304 | 0.8108 | 9.63E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene88304 | 0.826796 | 2.23E-54 | -1.69E-46 |
| MS.gene051018 | MS.gene88304 | 0.802955 | 4.39E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene88304 | 0.870551 | 1.34E-66 | -1.69E-46 |
| MS.gene051279 | MS.gene88304 | 0.81938 | 1.20E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene88304 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene88304 | 0.813719 | 2.22E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene88304 | 0.844947 | 5.51E-59 | -1.69E-46 |
| MS.gene051594 | MS.gene88304 | 0.801517 | 8.67E-49 | -1.69E-46 |
| MS.gene051664 | MS.gene88304 | 0.810855 | 9.37E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene88304 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene88304 | 0.856898 | 2.36E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene88304 | 0.876848 | 1.01E-68 | -1.69E-46 |
| MS.gene051744 | MS.gene88304 | 0.842108 | 3.16E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene88304 | 0.823572 | 1.29E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene88304 | 0.816314 | 5.90E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene88304 | 0.822472 | 2.33E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene88304 | 0.8453 | 4.43E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene88304 | 0.815269 | 1.01E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene88304 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene88304 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene88304 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene88304 | 0.828829 | 7.23E-55 | -1.69E-46 |
| MS.gene052732 | MS.gene88304 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene88304 | 0.811949 | 5.42E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene88304 | 0.813007 | 3.18E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene88304 | 0.817079 | 3.97E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene88304 | 0.817641 | 2.97E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene88304 | 0.847994 | 8.13E-60 | -1.69E-46 |
| MS.gene053174 | MS.gene88304 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene88304 | 0.836428 | 9.41E-57 | -1.69E-46 |
| MS.gene053563 | MS.gene88304 | 0.80309 | 4.11E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene88304 | 0.837758 | 4.30E-57 | -1.69E-46 |
| MS.gene053599 | MS.gene88304 | 0.813614 | 2.34E-51 | -1.69E-46 |
| MS.gene053883 | MS.gene88304 | 0.837477 | 5.08E-57 | -1.69E-46 |
| MS.gene053998 | MS.gene88304 | 0.816453 | 5.49E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene88304 | 0.820855 | 5.50E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene88304 | 0.821429 | 4.06E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene88304 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene05447 | MS.gene88304 | 0.800787 | 1.22E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene88304 | 0.843192 | 1.63E-58 | -1.69E-46 |
| MS.gene05462 | MS.gene88304 | 0.805465 | 1.32E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene88304 | 0.831917 | 1.27E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene88304 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene054791 | MS.gene88304 | 0.806599 | 7.61E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene88304 | 0.874277 | 7.66E-68 | -1.69E-46 |
| MS.gene055466 | MS.gene88304 | 0.876129 | 1.79E-68 | -1.69E-46 |
| MS.gene055467 | MS.gene88304 | 0.806834 | 6.78E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene88304 | 0.859971 | 2.86E-63 | -1.69E-46 |
| MS.gene055469 | MS.gene88304 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene88304 | 0.813383 | 2.63E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene88304 | 0.855213 | 7.34E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene88304 | -0.861261 | 1.16E-63 | -1.69E-46 |
| MS.gene055778 | MS.gene88304 | 0.822714 | 2.04E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene88304 | 0.837452 | 5.15E-57 | -1.69E-46 |
| MS.gene055890 | MS.gene88304 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene88304 | 0.825214 | 5.30E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene88304 | -0.836314 | 1.01E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene88304 | 0.809037 | 2.31E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene88304 | 0.830834 | 2.35E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene88304 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene056215 | MS.gene88304 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene88304 | 0.828354 | 9.42E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene88304 | 0.813481 | 2.50E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene88304 | 0.806221 | 9.14E-50 | -1.69E-46 |
| MS.gene056553 | MS.gene88304 | 0.802586 | 5.23E-49 | -1.69E-46 |
| MS.gene056859 | MS.gene88304 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene88304 | 0.819713 | 1.00E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene88304 | 0.835501 | 1.62E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene88304 | 0.835956 | 1.24E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene88304 | 0.813086 | 3.06E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene88304 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene88304 | 0.801974 | 6.99E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene88304 | 0.804615 | 1.98E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene88304 | 0.852811 | 3.61E-61 | -1.69E-46 |
| MS.gene058636 | MS.gene88304 | 0.819644 | 1.04E-52 | -1.69E-46 |
| MS.gene05894 | MS.gene88304 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene88304 | 0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene88304 | 0.818823 | 1.60E-52 | -1.69E-46 |
| MS.gene059084 | MS.gene88304 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene88304 | 0.810855 | 9.37E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene88304 | 0.861836 | 7.75E-64 | -1.69E-46 |
| MS.gene059937 | MS.gene88304 | 0.802833 | 4.65E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene88304 | 0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene88304 | 0.827343 | 1.65E-54 | -1.69E-46 |
| MS.gene060519 | MS.gene88304 | 0.83239 | 9.72E-56 | -1.69E-46 |
| MS.gene060521 | MS.gene88304 | 0.802645 | 5.09E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene88304 | 0.833684 | 4.63E-56 | -1.69E-46 |
| MS.gene061176 | MS.gene88304 | 0.804171 | 2.45E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene88304 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene88304 | 0.803657 | 3.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88304 | MS.gene058555 | PPI |
| MS.gene95862 | MS.gene88304 | PPI |
| MS.gene88304 | MS.gene015611 | PPI |
| MS.gene62647 | MS.gene88304 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88304.t1 | MTR_4g036760 | 97.901 | 905 | 19 | 0 | 1 | 905 | 155 | 1059 | 0.0 | 1828 |
| MS.gene88304.t1 | MTR_4g061050 | 78.343 | 905 | 196 | 0 | 1 | 905 | 154 | 1058 | 0.0 | 1461 |
| MS.gene88304.t1 | MTR_1g018410 | 67.647 | 68 | 16 | 2 | 6 | 71 | 8 | 71 | 6.03e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88304.t1 | AT5G07660 | 54.024 | 907 | 414 | 2 | 1 | 905 | 153 | 1058 | 0.0 | 939 |
| MS.gene88304.t1 | AT5G61460 | 54.906 | 907 | 406 | 2 | 1 | 905 | 152 | 1057 | 0.0 | 938 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATCGTTGCTTCTTATT+TGG | 0.126513 | 4.1:+62229942 | None:intergenic |
| CGAGACACGCGGGGTCTTTC+AGG | 0.130829 | 4.1:-62222052 | MS.gene88304:intron |
| GGATGAATTCGATGTCTTTA+TGG | 0.159745 | 4.1:-62220599 | MS.gene88304:intron |
| AGTTGCTTAATGGTAATAAA+TGG | 0.218798 | 4.1:-62233288 | MS.gene88304:CDS |
| TTCATTCTGACAGCAAATTA+TGG | 0.237863 | 4.1:+62224059 | None:intergenic |
| TCAGCAAGTCAATGATCTTC+TGG | 0.239388 | 4.1:-62238146 | MS.gene88304:CDS |
| AATTCATCCATTGCTCTAAA+TGG | 0.247481 | 4.1:+62220613 | None:intergenic |
| ATTGATGGATGGTTTGTATT+AGG | 0.264261 | 4.1:+62232976 | None:intergenic |
| TATGATTTAGACTTTCTAAT+TGG | 0.286407 | 4.1:+62223986 | None:intergenic |
| GCAAAAGCAGATGATCTTAA+AGG | 0.288494 | 4.1:-62225960 | MS.gene88304:CDS |
| AAGTCGTAGATGAGTATAAA+TGG | 0.303064 | 4.1:-62229854 | MS.gene88304:CDS |
| GTTTGACAGAAGTTGCTTAA+TGG | 0.303618 | 4.1:-62233298 | MS.gene88304:intron |
| CGAAGACCTCCTTCAAATTT+CGG | 0.309986 | 4.1:+62232053 | None:intergenic |
| TGGAAGCAGACCACAGCTTT+TGG | 0.314236 | 4.1:-62233965 | MS.gene88304:intron |
| AAATAACAAAGATAAATTTA+AGG | 0.322875 | 4.1:-62238260 | MS.gene88304:intron |
| CAGGGTCCTACATGATATTA+AGG | 0.331502 | 4.1:-62225600 | MS.gene88304:CDS |
| AATTGGCCGCTGATTTGCTC+TGG | 0.331929 | 4.1:+62224003 | None:intergenic |
| AGCCCTGTTTGATGCATCTT+GGG | 0.348212 | 4.1:+62222078 | None:intergenic |
| TTCAAAGGCAACAACCTTCC+CGG | 0.349359 | 4.1:+62232084 | None:intergenic |
| AAGAACGAAAGATTATTAAA+AGG | 0.350056 | 4.1:-62223710 | MS.gene88304:CDS |
| ATCTCAAGCGTCAACTTTGT+TGG | 0.350601 | 4.1:-62222491 | MS.gene88304:CDS |
| GAAAGCTGAGAGTGAACTTA+TGG | 0.364480 | 4.1:-62225778 | MS.gene88304:CDS |
| TACTTCTAAGAAGCTAGCTT+TGG | 0.372920 | 4.1:-62226812 | MS.gene88304:CDS |
| CAGCCCTGTTTGATGCATCT+TGG | 0.378810 | 4.1:+62222077 | None:intergenic |
| GAAGGCTTGCCAGAGGGCTT+TGG | 0.394747 | 4.1:-62222550 | MS.gene88304:intron |
| CCAAATAAGAAGCAACGATA+TGG | 0.395539 | 4.1:-62229942 | MS.gene88304:CDS |
| GTATTAGGAAGCATGTCTTC+TGG | 0.396628 | 4.1:+62232991 | None:intergenic |
| GCTTGGTGAAGGCAGGGAAC+AGG | 0.398821 | 4.1:-62219980 | MS.gene88304:CDS |
| TGGTCCAATTGGTGCCCATC+TGG | 0.400458 | 4.1:-62233873 | MS.gene88304:intron |
| ATTGGCCGCTGATTTGCTCT+GGG | 0.407159 | 4.1:+62224004 | None:intergenic |
| TGCCCCAAGATGCATCAAAC+AGG | 0.408283 | 4.1:-62222081 | MS.gene88304:CDS |
| GGAGGCAGAGGAGCACTGTC+TGG | 0.409604 | 4.1:-62225579 | MS.gene88304:CDS |
| AAGCCTCCCATTGGTCCAAT+TGG | 0.417367 | 4.1:-62233884 | MS.gene88304:CDS |
| CGTTGAACAAATTTCCATAC+AGG | 0.420583 | 4.1:-62238005 | MS.gene88304:CDS |
| ACGTGCAGTAGTTGTTTCAA+TGG | 0.421660 | 4.1:+62238114 | None:intergenic |
| TGATCATGCTAAGTCCGAAT+TGG | 0.424449 | 4.1:-62235189 | MS.gene88304:CDS |
| AAAAGAAACTTGCATGGTCA+TGG | 0.425831 | 4.1:-62237970 | MS.gene88304:CDS |
| CTGAATCTATTGAGGATTTG+AGG | 0.426933 | 4.1:-62223749 | MS.gene88304:CDS |
| CTTCGTTAGGAGGTTGTGAT+GGG | 0.427400 | 4.1:-62224032 | MS.gene88304:CDS |
| TGATCACCCCGCATGATACT+AGG | 0.435502 | 4.1:-62220412 | MS.gene88304:intron |
| AATCACAGGTGATCAAGAAC+GGG | 0.441397 | 4.1:+62219932 | None:intergenic |
| CAAAAGCAGATGATCTTAAA+GGG | 0.444375 | 4.1:-62225959 | MS.gene88304:CDS |
| CAGAATGAACTTGCTTCGTT+AGG | 0.445536 | 4.1:-62224045 | MS.gene88304:CDS |
| GCTTCGTTAGGAGGTTGTGA+TGG | 0.447998 | 4.1:-62224033 | MS.gene88304:CDS |
| AAATCAAAACCTATCCAATT+CGG | 0.451467 | 4.1:+62235175 | None:intergenic |
| TTCTAGATTGAAAGAAGAAG+AGG | 0.454972 | 4.1:-62235074 | MS.gene88304:intron |
| TGTAAGACGGAAAGAATTGA+TGG | 0.456250 | 4.1:+62232961 | None:intergenic |
| AGCTAAGATTGATAAACAAC+TGG | 0.459010 | 4.1:-62237870 | MS.gene88304:intron |
| GTTGCTTAATGGTAATAAAT+GGG | 0.459559 | 4.1:-62233287 | MS.gene88304:CDS |
| ATTACCAGATGGGCACCAAT+TGG | 0.462087 | 4.1:+62233869 | None:intergenic |
| CTTGTGATCAGTCACTATAA+AGG | 0.466397 | 4.1:+62233225 | None:intergenic |
| GTTCAATGTCTTGGTCGATC+TGG | 0.469596 | 4.1:-62232920 | MS.gene88304:intron |
| TATCGTTGCTTCTTATTTGG+AGG | 0.474228 | 4.1:+62229945 | None:intergenic |
| CTTGTTAACGACTATAATAC+CGG | 0.476476 | 4.1:-62232103 | MS.gene88304:CDS |
| TACATTCAGTTTCTGTCGAA+GGG | 0.478793 | 4.1:+62223671 | None:intergenic |
| AATGAACTTGCTTCGTTAGG+AGG | 0.480699 | 4.1:-62224042 | MS.gene88304:CDS |
| ATTTCGGATCCTTTGTTCAA+AGG | 0.481427 | 4.1:+62232069 | None:intergenic |
| AGATGGCACAACAGTTGAAA+AGG | 0.482076 | 4.1:-62235494 | MS.gene88304:CDS |
| ACAAAGGATCCGAAATTTGA+AGG | 0.483560 | 4.1:-62232062 | MS.gene88304:CDS |
| AAAATTTACCTCAATCGATA+AGG | 0.484478 | 4.1:+62222292 | None:intergenic |
| TAGGGACTTTGTGTAACTGC+TGG | 0.485961 | 4.1:-62226844 | MS.gene88304:CDS |
| TTCGAAAATCCAAAGCCCTC+TGG | 0.486490 | 4.1:+62222541 | None:intergenic |
| TGGGCACCAATTGGACCAAT+GGG | 0.486609 | 4.1:+62233878 | None:intergenic |
| CTTCATGCCTCCTCTGCTCA+AGG | 0.492997 | 4.1:+62225988 | None:intergenic |
| CGTCTAAGTAGTTCTGTTGA+AGG | 0.493088 | 4.1:-62229918 | MS.gene88304:CDS |
| TTTAAGTCGCTCTATGTCCT+TGG | 0.495627 | 4.1:-62236780 | MS.gene88304:intron |
| TTTATCAATCTTAGCTTGGC+AGG | 0.496904 | 4.1:+62237877 | None:intergenic |
| ACTGTCTGGAGCTTACAAAA+AGG | 0.500073 | 4.1:-62225565 | MS.gene88304:CDS |
| CGGGGTGATCAATATCCATT+GGG | 0.506474 | 4.1:+62220424 | None:intergenic |
| GTTGTTTATCAATCTTAGCT+TGG | 0.509132 | 4.1:+62237873 | None:intergenic |
| GCGGGGTGATCAATATCCAT+TGG | 0.509656 | 4.1:+62220423 | None:intergenic |
| GTTCACTCTCAGCTTTCTCA+AGG | 0.510647 | 4.1:+62225784 | None:intergenic |
| CAGATACTCTGAATCTATTG+AGG | 0.510872 | 4.1:-62223757 | MS.gene88304:CDS |
| TCGTTAAGCTCCTTCTCTAT+AGG | 0.511385 | 4.1:+62238058 | None:intergenic |
| AAAGAAACTTGCATGGTCAT+GGG | 0.520535 | 4.1:-62237969 | MS.gene88304:CDS |
| TCGCACATTGTTTCAAAAGA+CGG | 0.525566 | 4.1:+62233197 | None:intergenic |
| AATTAGTGACATACAGAAGA+TGG | 0.525628 | 4.1:-62235511 | MS.gene88304:CDS |
| TCACACTGTGTTCAATGTCT+TGG | 0.527984 | 4.1:-62232929 | MS.gene88304:CDS |
| CTTTATAGTGACTGATCACA+AGG | 0.528146 | 4.1:-62233224 | MS.gene88304:CDS |
| AAATTGAAAAGCTGAAGAAT+CGG | 0.528467 | 4.1:-62237907 | MS.gene88304:CDS |
| TTTGTTTCCTCCAAAAGCTG+TGG | 0.534002 | 4.1:+62233955 | None:intergenic |
| AATTAAACAGTTCTTCTACA+AGG | 0.535209 | 4.1:-62238179 | MS.gene88304:intron |
| AAGGAGGTCTTCGCTGTGGA+TGG | 0.536962 | 4.1:-62232043 | MS.gene88304:CDS |
| TTGCATGTGCAGCTTGGTGA+AGG | 0.537366 | 4.1:-62219991 | MS.gene88304:intron |
| ATCACAAGTCAAGCAAATGA+AGG | 0.539154 | 4.1:-62236807 | MS.gene88304:CDS |
| ATGGGCACCAATTGGACCAA+TGG | 0.539785 | 4.1:+62233877 | None:intergenic |
| ATGTGCAGCTTGGTGAAGGC+AGG | 0.540551 | 4.1:-62219987 | MS.gene88304:intron |
| TGTAATACCTAGTATCATGC+GGG | 0.543861 | 4.1:+62220405 | None:intergenic |
| ATGCTAAGTCCGAATTGGAT+AGG | 0.544206 | 4.1:-62235184 | MS.gene88304:intron |
| AAGGCTTGAAGTACGAATGC+AGG | 0.545965 | 4.1:-62235475 | MS.gene88304:CDS |
| CACTTAGGCGTGAGAGCCGA+AGG | 0.546097 | 4.1:-62223963 | MS.gene88304:intron |
| TTCAATAAGACCTATAGAGA+AGG | 0.546249 | 4.1:-62238068 | MS.gene88304:CDS |
| ATACATTCAGTTTCTGTCGA+AGG | 0.549046 | 4.1:+62223670 | None:intergenic |
| AGAGTCTCCATTTAGAGCAA+TGG | 0.551198 | 4.1:-62220620 | MS.gene88304:CDS |
| TAGAAGACCTTGAGCAGAGG+AGG | 0.552531 | 4.1:-62225995 | MS.gene88304:CDS |
| GAGACTCTGTCATTTCATGA+AGG | 0.554710 | 4.1:+62220635 | None:intergenic |
| TATACTTCTTGTCATGATCT+CGG | 0.555494 | 4.1:+62234155 | None:intergenic |
| AAATCACAGGTGATCAAGAA+CGG | 0.556108 | 4.1:+62219931 | None:intergenic |
| GGAGGAAGAGTTGTCTGCAC+CGG | 0.556729 | 4.1:+62229963 | None:intergenic |
| AGGTTGTTGCCTTTGAACAA+AGG | 0.562112 | 4.1:-62232078 | MS.gene88304:CDS |
| CTTAATATCATGTAGGACCC+TGG | 0.565032 | 4.1:+62225601 | None:intergenic |
| TCAATCTTAGCTTGGCAGGT+AGG | 0.567601 | 4.1:+62237881 | None:intergenic |
| GCAGAGGAGGCATGAAGCAG+TGG | 0.569889 | 4.1:-62225982 | MS.gene88304:CDS |
| TCTTGACTCATAATCACGCA+TGG | 0.570641 | 4.1:+62238310 | None:intergenic |
| ACTGAAGGGGCTTCGAGATG+AGG | 0.571274 | 4.1:-62235213 | MS.gene88304:CDS |
| ACATGATATTAAGGAGGCAG+AGG | 0.571752 | 4.1:-62225591 | MS.gene88304:CDS |
| AGAGGCAGATCTCAAGCTTG+AGG | 0.572006 | 4.1:-62229823 | MS.gene88304:CDS |
| AAAGTCTAAATCATACACTT+AGG | 0.572201 | 4.1:-62223978 | MS.gene88304:CDS |
| CTTGGTGAAGGCAGGGAACA+GGG | 0.574391 | 4.1:-62219979 | MS.gene88304:CDS |
| TTCACTCTCAGCTTTCTCAA+GGG | 0.574997 | 4.1:+62225785 | None:intergenic |
| ATGATAATGTCATGAAAACC+AGG | 0.575198 | 4.1:-62225619 | MS.gene88304:CDS |
| CAGGGTAAAGAAGATGCAAA+TGG | 0.576301 | 4.1:-62219961 | MS.gene88304:CDS |
| GCAGATGACCTTATCGATTG+AGG | 0.578588 | 4.1:-62222300 | MS.gene88304:intron |
| GGAATTGAGCATTCTACCAA+TGG | 0.580475 | 4.1:+62233246 | None:intergenic |
| GTTGCTGTTGAACATGCCAT+TGG | 0.582204 | 4.1:-62233262 | MS.gene88304:CDS |
| CTGCCTCCTTAATATCATGT+AGG | 0.582341 | 4.1:+62225594 | None:intergenic |
| CACAAACTATATTACCAGAT+GGG | 0.585651 | 4.1:+62233859 | None:intergenic |
| AGACGGAAAGAATTGATGGA+TGG | 0.589022 | 4.1:+62232965 | None:intergenic |
| AGGTTTAAGAAGCCTCCCAT+TGG | 0.592949 | 4.1:-62233893 | MS.gene88304:CDS |
| GGGAAATTTGACGAATTGTG+TGG | 0.593007 | 4.1:-62225939 | MS.gene88304:intron |
| ACTGCAGGTGGATCTTGAGA+AGG | 0.594570 | 4.1:-62224085 | MS.gene88304:intron |
| GTATAAATGGAATAAGAGAG+AGG | 0.595109 | 4.1:-62229841 | MS.gene88304:CDS |
| GCCCTGTTTGATGCATCTTG+GGG | 0.595878 | 4.1:+62222079 | None:intergenic |
| TTTATTGAAGGCTTGCCAGA+GGG | 0.599754 | 4.1:-62222556 | MS.gene88304:intron |
| AATCAAAAGGATTGATGATG+AGG | 0.600262 | 4.1:-62235014 | MS.gene88304:intron |
| GCAGAATAAAATTAAAACGA+TGG | 0.604147 | 4.1:-62238032 | MS.gene88304:CDS |
| ATATTGAGAGATGTCATCAA+AGG | 0.607533 | 4.1:-62233913 | MS.gene88304:CDS |
| GTGATTATCGCATTGTAAGA+CGG | 0.609075 | 4.1:+62232948 | None:intergenic |
| AGACTCTGTCATTTCATGAA+GGG | 0.615851 | 4.1:+62220636 | None:intergenic |
| TTGGCCGCTGATTTGCTCTG+GGG | 0.619684 | 4.1:+62224005 | None:intergenic |
| GTTTATTGAAGGCTTGCCAG+AGG | 0.620811 | 4.1:-62222557 | MS.gene88304:intron |
| TGACGTGGACAAGAAACTTG+AGG | 0.624480 | 4.1:-62237942 | MS.gene88304:CDS |
| CTGAGGCACAAGGATCCCAA+TGG | 0.626707 | 4.1:-62220439 | MS.gene88304:CDS |
| GCCCCAAGATGCATCAAACA+GGG | 0.632464 | 4.1:-62222080 | MS.gene88304:CDS |
| TTCAACAATCTCATCAACTG+AGG | 0.632884 | 4.1:+62226741 | None:intergenic |
| CAGGGCTGTTCGAGACACGC+GGG | 0.633486 | 4.1:-62222062 | MS.gene88304:CDS |
| GCAGGCTGAAGAATCTGACA+TGG | 0.634034 | 4.1:-62235243 | MS.gene88304:intron |
| TGTGCGAAGGAAGCAAACTA+CGG | 0.638310 | 4.1:-62233181 | MS.gene88304:CDS |
| ACAGGGCTGTTCGAGACACG+CGG | 0.638618 | 4.1:-62222063 | MS.gene88304:CDS |
| GTGTAATACCTAGTATCATG+CGG | 0.643316 | 4.1:+62220404 | None:intergenic |
| ATTGACTTGCTGAAGAAGTG+TGG | 0.645872 | 4.1:+62238156 | None:intergenic |
| TTCGTTAGGAGGTTGTGATG+GGG | 0.645969 | 4.1:-62224031 | MS.gene88304:CDS |
| AAGGGCTAATGCAAAGCACA+AGG | 0.650919 | 4.1:+62220654 | None:intergenic |
| TTTGAAGGAGGTCTTCGCTG+TGG | 0.651154 | 4.1:-62232047 | MS.gene88304:CDS |
| GCTTAATGGTAATAAATGGG+CGG | 0.653794 | 4.1:-62233284 | MS.gene88304:CDS |
| TGTTAGAAGACCTTGAGCAG+AGG | 0.654613 | 4.1:-62225998 | MS.gene88304:CDS |
| GCACCAATTGGACCAATGGG+AGG | 0.661539 | 4.1:+62233881 | None:intergenic |
| ATCTCATCAACTGAGGACAA+AGG | 0.661907 | 4.1:+62226748 | None:intergenic |
| TCAACAACAGCAAAGCAACA+AGG | 0.665018 | 4.1:-62234104 | MS.gene88304:intron |
| ATTGAAACAACTACTGCACG+TGG | 0.668807 | 4.1:-62238112 | MS.gene88304:CDS |
| TGTGCAGCTTGGTGAAGGCA+GGG | 0.670551 | 4.1:-62219986 | MS.gene88304:intron |
| GGCTGAAGAATCTGACATGG+AGG | 0.674024 | 4.1:-62235240 | MS.gene88304:CDS |
| TAACGACTATAATACCGGGA+AGG | 0.678686 | 4.1:-62232098 | MS.gene88304:CDS |
| TTGTTAACGACTATAATACC+GGG | 0.685701 | 4.1:-62232102 | MS.gene88304:CDS |
| AGGGCTGTTCGAGACACGCG+GGG | 0.686602 | 4.1:-62222061 | MS.gene88304:CDS |
| AAGGATCCGAAATTTGAAGG+AGG | 0.689328 | 4.1:-62232059 | MS.gene88304:CDS |
| GGTCCTACATGATATTAAGG+AGG | 0.691180 | 4.1:-62225597 | MS.gene88304:CDS |
| GTAACCCCAGAGCAAATCAG+CGG | 0.691594 | 4.1:-62224009 | MS.gene88304:CDS |
| TGATAATGTCATGAAAACCA+GGG | 0.697105 | 4.1:-62225618 | MS.gene88304:CDS |
| GTAATACCTAGTATCATGCG+GGG | 0.719878 | 4.1:+62220406 | None:intergenic |
| ATGGTCATGGGTTTATGACG+TGG | 0.730606 | 4.1:-62237957 | MS.gene88304:CDS |
| ATCACAGGTGATCAAGAACG+GGG | 0.733694 | 4.1:+62219933 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 62219944 | 62238347 | 62219944 | ID=MS.gene88304 |
| chr4.1 | mRNA | 62219944 | 62238347 | 62219944 | ID=MS.gene88304.t1;Parent=MS.gene88304 |
| chr4.1 | exon | 62238261 | 62238347 | 62238261 | ID=MS.gene88304.t1.exon1;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62238261 | 62238347 | 62238261 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62237871 | 62238191 | 62237871 | ID=MS.gene88304.t1.exon2;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62237871 | 62238191 | 62237871 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62236781 | 62236894 | 62236781 | ID=MS.gene88304.t1.exon3;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62236781 | 62236894 | 62236781 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62235443 | 62235577 | 62235443 | ID=MS.gene88304.t1.exon4;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62235443 | 62235577 | 62235443 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62235185 | 62235261 | 62235185 | ID=MS.gene88304.t1.exon5;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62235185 | 62235261 | 62235185 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62235015 | 62235090 | 62235015 | ID=MS.gene88304.t1.exon6;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62235015 | 62235090 | 62235015 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62234105 | 62234179 | 62234105 | ID=MS.gene88304.t1.exon7;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62234105 | 62234179 | 62234105 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62233874 | 62233978 | 62233874 | ID=MS.gene88304.t1.exon8;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62233874 | 62233978 | 62233874 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62233142 | 62233311 | 62233142 | ID=MS.gene88304.t1.exon9;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62233142 | 62233311 | 62233142 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62232921 | 62233023 | 62232921 | ID=MS.gene88304.t1.exon10;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62232921 | 62233023 | 62232921 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62232034 | 62232146 | 62232034 | ID=MS.gene88304.t1.exon11;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62232034 | 62232146 | 62232034 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62229794 | 62229998 | 62229794 | ID=MS.gene88304.t1.exon12;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62229794 | 62229998 | 62229794 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62226732 | 62226863 | 62226732 | ID=MS.gene88304.t1.exon13;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62226732 | 62226863 | 62226732 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62225940 | 62226054 | 62225940 | ID=MS.gene88304.t1.exon14;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62225940 | 62226054 | 62225940 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62225746 | 62225831 | 62225746 | ID=MS.gene88304.t1.exon15;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62225746 | 62225831 | 62225746 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62225559 | 62225654 | 62225559 | ID=MS.gene88304.t1.exon16;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62225559 | 62225654 | 62225559 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62223964 | 62224100 | 62223964 | ID=MS.gene88304.t1.exon17;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62223964 | 62224100 | 62223964 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62223674 | 62223776 | 62223674 | ID=MS.gene88304.t1.exon18;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62223674 | 62223776 | 62223674 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62222489 | 62222568 | 62222489 | ID=MS.gene88304.t1.exon19;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62222489 | 62222568 | 62222489 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62222301 | 62222379 | 62222301 | ID=MS.gene88304.t1.exon20;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62222301 | 62222379 | 62222301 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62222053 | 62222110 | 62222053 | ID=MS.gene88304.t1.exon21;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62222053 | 62222110 | 62222053 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62220600 | 62220697 | 62220600 | ID=MS.gene88304.t1.exon22;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62220600 | 62220697 | 62220600 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62220413 | 62220507 | 62220413 | ID=MS.gene88304.t1.exon23;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62220413 | 62220507 | 62220413 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| chr4.1 | exon | 62219944 | 62220001 | 62219944 | ID=MS.gene88304.t1.exon24;Parent=MS.gene88304.t1 |
| chr4.1 | CDS | 62219944 | 62220001 | 62219944 | ID=cds.MS.gene88304.t1;Parent=MS.gene88304.t1 |
| Gene Sequence |
| Protein sequence |
