Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04988.t1 | XP_003600699.1 | 95.5 | 423 | 17 | 1 | 10 | 430 | 69 | 491 | 8.50E-162 | 580.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04988.t1 | B7FNB2 | 95.5 | 423 | 17 | 1 | 10 | 430 | 69 | 491 | 6.1e-162 | 580.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04987 | MS.gene04988 | 0.865305 | 6.50E-65 | -1.69E-46 |
| MS.gene04988 | MS.gene050277 | 0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene04988 | MS.gene053188 | 0.804038 | 2.62E-49 | -1.69E-46 |
| MS.gene04988 | MS.gene057079 | 0.819651 | 1.04E-52 | -1.69E-46 |
| MS.gene04988 | MS.gene05795 | 0.803556 | 3.29E-49 | -1.69E-46 |
| MS.gene04988 | MS.gene060297 | 0.817921 | 2.57E-52 | -1.69E-46 |
| MS.gene04988 | MS.gene06667 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene04988 | MS.gene06883 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene04988 | MS.gene07368 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene04988 | MS.gene22314 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene04988 | MS.gene28218 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene04988 | MS.gene72128 | 0.806959 | 6.38E-50 | -1.69E-46 |
| MS.gene04988 | MS.gene72130 | 0.815838 | 7.53E-52 | -1.69E-46 |
| MS.gene04988 | MS.gene83734 | 0.800645 | 1.31E-48 | -1.69E-46 |
| MS.gene04988 | MS.gene92849 | 0.820378 | 7.08E-53 | -1.69E-46 |
| MS.gene04988 | MS.gene93202 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene04988 | MS.gene97738 | 0.812354 | 4.42E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04988.t1 | MTR_3g065220 | 95.981 | 423 | 15 | 1 | 10 | 430 | 69 | 491 | 0.0 | 792 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04988.t1 | AT5G37590 | 54.524 | 431 | 193 | 3 | 2 | 430 | 62 | 491 | 9.00e-163 | 470 |
| MS.gene04988.t1 | AT5G37590 | 54.250 | 400 | 182 | 1 | 2 | 400 | 62 | 461 | 7.93e-151 | 437 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 21545 | gene | 207 | 9859 | 207 | ID=MS.gene04988 |
| 21545 | mRNA | 207 | 9859 | 207 | ID=MS.gene04988.t1;Parent=MS.gene04988 |
| 21545 | exon | 207 | 422 | 207 | ID=MS.gene04988.t1.exon1;Parent=MS.gene04988.t1 |
| 21545 | CDS | 207 | 422 | 207 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 541 | 645 | 541 | ID=MS.gene04988.t1.exon2;Parent=MS.gene04988.t1 |
| 21545 | CDS | 541 | 645 | 541 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 1251 | 1351 | 1251 | ID=MS.gene04988.t1.exon3;Parent=MS.gene04988.t1 |
| 21545 | CDS | 1251 | 1351 | 1251 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 1597 | 1675 | 1597 | ID=MS.gene04988.t1.exon4;Parent=MS.gene04988.t1 |
| 21545 | CDS | 1597 | 1675 | 1597 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 2666 | 2677 | 2666 | ID=MS.gene04988.t1.exon5;Parent=MS.gene04988.t1 |
| 21545 | CDS | 2666 | 2677 | 2666 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 2794 | 2859 | 2794 | ID=MS.gene04988.t1.exon6;Parent=MS.gene04988.t1 |
| 21545 | CDS | 2794 | 2859 | 2794 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 4492 | 4560 | 4492 | ID=MS.gene04988.t1.exon7;Parent=MS.gene04988.t1 |
| 21545 | CDS | 4492 | 4560 | 4492 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 4665 | 4721 | 4665 | ID=MS.gene04988.t1.exon8;Parent=MS.gene04988.t1 |
| 21545 | CDS | 4665 | 4721 | 4665 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 5673 | 5750 | 5673 | ID=MS.gene04988.t1.exon9;Parent=MS.gene04988.t1 |
| 21545 | CDS | 5673 | 5750 | 5673 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 6276 | 6373 | 6276 | ID=MS.gene04988.t1.exon10;Parent=MS.gene04988.t1 |
| 21545 | CDS | 6276 | 6373 | 6276 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 6461 | 6506 | 6461 | ID=MS.gene04988.t1.exon11;Parent=MS.gene04988.t1 |
| 21545 | CDS | 6461 | 6506 | 6461 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 6736 | 6863 | 6736 | ID=MS.gene04988.t1.exon12;Parent=MS.gene04988.t1 |
| 21545 | CDS | 6736 | 6863 | 6736 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 8173 | 8281 | 8173 | ID=MS.gene04988.t1.exon13;Parent=MS.gene04988.t1 |
| 21545 | CDS | 8173 | 8281 | 8173 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 8406 | 8468 | 8406 | ID=MS.gene04988.t1.exon14;Parent=MS.gene04988.t1 |
| 21545 | CDS | 8406 | 8468 | 8406 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| 21545 | exon | 9797 | 9859 | 9797 | ID=MS.gene04988.t1.exon15;Parent=MS.gene04988.t1 |
| 21545 | CDS | 9797 | 9859 | 9797 | ID=cds.MS.gene04988.t1;Parent=MS.gene04988.t1 |
| Gene Sequence |
| Protein sequence |
