Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06883.t1 | XP_027190003.1 | 86.1 | 231 | 24 | 2 | 1 | 231 | 31 | 253 | 6.30E-103 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06883.t1 | Q5PPY1 | 56.4 | 181 | 77 | 2 | 51 | 230 | 1 | 180 | 6.7e-53 | 208.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06883.t1 | A0A1S2YDQ7 | 86.1 | 231 | 24 | 2 | 1 | 231 | 45 | 267 | 4.5e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene06883 | 0.826436 | 2.72E-54 | -1.69E-46 |
| MS.gene049255 | MS.gene06883 | 0.804249 | 2.37E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene06883 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene049653 | MS.gene06883 | 0.817522 | 3.16E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene06883 | 0.808244 | 3.41E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene06883 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene04988 | MS.gene06883 | 0.803727 | 3.04E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene06883 | 0.898085 | 7.49E-77 | -1.69E-46 |
| MS.gene050303 | MS.gene06883 | 0.841403 | 4.85E-58 | -1.69E-46 |
| MS.gene050320 | MS.gene06883 | 0.825326 | 4.98E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene06883 | 0.805923 | 1.06E-49 | -1.69E-46 |
| MS.gene050955 | MS.gene06883 | 0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene051063 | MS.gene06883 | 0.828781 | 7.43E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene06883 | 0.801599 | 8.35E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene06883 | 0.851177 | 1.05E-60 | -1.69E-46 |
| MS.gene051349 | MS.gene06883 | 0.801135 | 1.04E-48 | -1.69E-46 |
| MS.gene05134 | MS.gene06883 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene06883 | 0.806691 | 7.27E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene06883 | 0.863753 | 1.99E-64 | -1.69E-46 |
| MS.gene051678 | MS.gene06883 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene06883 | 0.844234 | 8.57E-59 | -1.69E-46 |
| MS.gene051748 | MS.gene06883 | 0.846891 | 1.63E-59 | -1.69E-46 |
| MS.gene051756 | MS.gene06883 | 0.822138 | 2.78E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene06883 | 0.882865 | 7.28E-71 | -1.69E-46 |
| MS.gene052176 | MS.gene06883 | 0.807554 | 4.78E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene06883 | 0.844769 | 6.16E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene06883 | 0.833923 | 4.03E-56 | -1.69E-46 |
| MS.gene052309 | MS.gene06883 | -0.818903 | 1.54E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene06883 | 0.834605 | 2.72E-56 | -1.69E-46 |
| MS.gene052818 | MS.gene06883 | -0.813812 | 2.12E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene06883 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene06883 | 0.850123 | 2.08E-60 | -1.69E-46 |
| MS.gene053109 | MS.gene06883 | 0.81722 | 3.69E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene06883 | 0.808948 | 2.41E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene06883 | 0.801857 | 7.39E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene06883 | 0.805139 | 1.54E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene06883 | 0.810406 | 1.17E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene06883 | 0.810534 | 1.10E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene06883 | 0.83232 | 1.01E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene06883 | 0.829331 | 5.46E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene06883 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene06883 | 0.8651 | 7.54E-65 | -1.69E-46 |
| MS.gene056986 | MS.gene06883 | 0.81874 | 1.67E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene06883 | 0.819149 | 1.35E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene06883 | 0.878888 | 1.95E-69 | -1.69E-46 |
| MS.gene057094 | MS.gene06883 | 0.828818 | 7.27E-55 | -1.69E-46 |
| MS.gene057140 | MS.gene06883 | 0.907596 | 4.27E-81 | -1.69E-46 |
| MS.gene057234 | MS.gene06883 | 0.875656 | 2.59E-68 | -1.69E-46 |
| MS.gene057555 | MS.gene06883 | 0.808281 | 3.35E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene06883 | 0.841561 | 4.41E-58 | -1.69E-46 |
| MS.gene05781 | MS.gene06883 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene06883 | 0.846423 | 2.19E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene06883 | 0.851296 | 9.73E-61 | -1.69E-46 |
| MS.gene058055 | MS.gene06883 | 0.833835 | 4.24E-56 | -1.69E-46 |
| MS.gene058084 | MS.gene06883 | 0.809647 | 1.71E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene06883 | 0.891335 | 4.37E-74 | -1.69E-46 |
| MS.gene058906 | MS.gene06883 | 0.847387 | 1.19E-59 | -1.69E-46 |
| MS.gene059249 | MS.gene06883 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene059317 | MS.gene06883 | 0.841477 | 4.64E-58 | -1.69E-46 |
| MS.gene05954 | MS.gene06883 | 0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene06883 | 0.843736 | 1.17E-58 | -1.69E-46 |
| MS.gene059898 | MS.gene06883 | 0.843258 | 1.57E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene06883 | 0.856531 | 3.02E-62 | -1.69E-46 |
| MS.gene06011 | MS.gene06883 | 0.811623 | 6.38E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene06883 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene06883 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene06883 | 0.870969 | 9.76E-67 | -1.69E-46 |
| MS.gene060763 | MS.gene06883 | 0.806357 | 8.56E-50 | -1.69E-46 |
| MS.gene06118 | MS.gene06883 | 0.81856 | 1.84E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTCTTCATTATATC+TGG | 0.192913 | 3.2:+77399454 | None:intergenic |
| TTTCTGTATTTGAACCATTA+TGG | 0.214523 | 3.2:+77401631 | None:intergenic |
| CACCTCTTATAGTTGCTAAA+TGG | 0.288298 | 3.2:-77400754 | MS.gene06883:intron |
| TTCTGTATTTGAACCATTAT+GGG | 0.289351 | 3.2:+77401632 | None:intergenic |
| AAAGCAATCAACAAGGGAAT+TGG | 0.322873 | 3.2:-77398719 | MS.gene06883:CDS |
| ATTATCTCAATGATGGTCTT+TGG | 0.327245 | 3.2:-77398682 | MS.gene06883:CDS |
| TGTCCTGGTCTTACATCTCC+TGG | 0.329472 | 3.2:-77399382 | MS.gene06883:CDS |
| AAATATGAACTTTACATTGA+TGG | 0.334633 | 3.2:+77400539 | None:intergenic |
| GGGTGTTCTGGATGAGGAAG+TGG | 0.336037 | 3.2:-77399359 | MS.gene06883:CDS |
| AACTATAAGAGGTGACTTCT+TGG | 0.338003 | 3.2:+77400763 | None:intergenic |
| TGGTGCAATAAGATTTGTTT+TGG | 0.351364 | 3.2:-77399422 | MS.gene06883:CDS |
| AAGCAATCAACAAGGGAATT+GGG | 0.354037 | 3.2:-77398718 | MS.gene06883:CDS |
| GTGTTCTGGATGAGGAAGTG+GGG | 0.404683 | 3.2:-77399357 | MS.gene06883:CDS |
| AAGTTAGCAAAGGCCCATAA+TGG | 0.420270 | 3.2:-77401645 | None:intergenic |
| AACCATTTAGCAACTATAAG+AGG | 0.435947 | 3.2:+77400752 | None:intergenic |
| GGTGTTCTGGATGAGGAAGT+GGG | 0.436303 | 3.2:-77399358 | MS.gene06883:CDS |
| GTCCTGGTCTTACATCTCCT+GGG | 0.439119 | 3.2:-77399381 | MS.gene06883:CDS |
| TCCAACACTGGTTCAAGTCC+TGG | 0.460743 | 3.2:+77400797 | None:intergenic |
| ACTATAAGAGGTGACTTCTT+GGG | 0.475825 | 3.2:+77400764 | None:intergenic |
| CTTATGGTGCGTTGAGTTGA+AGG | 0.481791 | 3.2:+77401509 | None:intergenic |
| AAACAGCATGCCCTTGCCAT+TGG | 0.482054 | 3.2:-77399196 | MS.gene06883:CDS |
| TTTCTCATTTCAGGCCATCA+TGG | 0.485619 | 3.2:-77399227 | MS.gene06883:intron |
| TAGTCAGAACCATCTCAATC+TGG | 0.488658 | 3.2:-77400632 | MS.gene06883:CDS |
| TGTTCTGGATGAGGAAGTGG+GGG | 0.494533 | 3.2:-77399356 | MS.gene06883:CDS |
| AGTCGCAAGGTAGGCATGTA+CGG | 0.512614 | 3.2:+77400565 | None:intergenic |
| AACTTGCATTATCTCAATGA+TGG | 0.525811 | 3.2:-77398689 | MS.gene06883:CDS |
| ATTACTAAACTGCAGTATCC+AGG | 0.527390 | 3.2:-77400815 | MS.gene06883:intron |
| GAACCATCTCAATCTGGTTG+TGG | 0.552638 | 3.2:-77400626 | MS.gene06883:CDS |
| GGTGCAAACATAATGTGTCC+TGG | 0.560571 | 3.2:-77399397 | MS.gene06883:CDS |
| TCCTGGTCTTACATCTCCTG+GGG | 0.566559 | 3.2:-77399380 | MS.gene06883:CDS |
| TCCAGGACTTGAACCAGTGT+TGG | 0.569000 | 3.2:-77400798 | MS.gene06883:CDS |
| TCTCAATGATGGTCTTTGGA+AGG | 0.575361 | 3.2:-77398678 | MS.gene06883:intron |
| AGCAATCAACAAGGGAATTG+GGG | 0.580148 | 3.2:-77398717 | MS.gene06883:CDS |
| ACGTCAAAGTATTGCAGATG+AGG | 0.585598 | 3.2:-77401080 | MS.gene06883:intron |
| TGATGGAGAAGTCGCAAGGT+AGG | 0.596779 | 3.2:+77400556 | None:intergenic |
| TTTCAGGCCATCATGGCTGA+AGG | 0.607923 | 3.2:-77399220 | MS.gene06883:intron |
| TCACCACAACCAGATTGAGA+TGG | 0.615908 | 3.2:+77400623 | None:intergenic |
| ACGCAACAGTGTAACTCTCG+AGG | 0.621227 | 3.2:+77401605 | None:intergenic |
| ACATTGATGGAGAAGTCGCA+AGG | 0.629589 | 3.2:+77400552 | None:intergenic |
| CGCAACAGTGTAACTCTCGA+GGG | 0.639969 | 3.2:+77401606 | None:intergenic |
| TTCAGAAAAGCAATCAACAA+GGG | 0.652972 | 3.2:-77398725 | MS.gene06883:intron |
| GGAAGTATATCATCCAACAC+TGG | 0.658326 | 3.2:+77400785 | None:intergenic |
| TTTCAGAAAAGCAATCAACA+AGG | 0.684568 | 3.2:-77398726 | MS.gene06883:intron |
| CCTGGTCTTACATCTCCTGG+GGG | 0.695202 | 3.2:-77399379 | MS.gene06883:CDS |
| AAACAAATCTTATTGCACCA+CGG | 0.718835 | 3.2:+77399425 | None:intergenic |
| AAGAAATTACAAGTTGACCG+TGG | 0.749697 | 3.2:-77399442 | MS.gene06883:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTAATTTATTTTT+CGG | - | chr3.2:77398665-77398684 | MS.gene06883:intron | 0.0% |
| !! | AAATGATAATTGATAAATTA+CGG | + | chr3.2:77400462-77400481 | None:intergenic | 10.0% |
| !! | TATAATATATTAAAAATCAG+CGG | + | chr3.2:77401590-77401609 | None:intergenic | 10.0% |
| !!! | GAAATTAAATCATTTTTTTA+GGG | + | chr3.2:77398738-77398757 | None:intergenic | 10.0% |
| !! | AAAACTAATATAGAAGAAAA+TGG | + | chr3.2:77398642-77398661 | None:intergenic | 15.0% |
| !! | AGAATAAAATAAAGATTGTT+AGG | + | chr3.2:77401614-77401633 | None:intergenic | 15.0% |
| !! | CATATATTATCTTGATTAAA+AGG | + | chr3.2:77400216-77400235 | None:intergenic | 15.0% |
| !! | TTTGTAATATTCTTTCATTT+GGG | - | chr3.2:77399571-77399590 | MS.gene06883:intron | 15.0% |
| !!! | ATTTTATTCTATATTGTAGA+TGG | - | chr3.2:77401624-77401643 | MS.gene06883:CDS | 15.0% |
| !!! | CGAAATTAAATCATTTTTTT+AGG | + | chr3.2:77398739-77398758 | None:intergenic | 15.0% |
| !! | AAATAAGTATACATACATAG+TGG | - | chr3.2:77401456-77401475 | MS.gene06883:intron | 20.0% |
| !! | AAATATGAACTTTACATTGA+TGG | + | chr3.2:77399533-77399552 | None:intergenic | 20.0% |
| !! | AATAAAAAAGATGCATAGTT+TGG | + | chr3.2:77399191-77399210 | None:intergenic | 20.0% |
| !! | ATGCATATATAAAGTAAAAG+AGG | + | chr3.2:77399921-77399940 | None:intergenic | 20.0% |
| !! | CCAACACAAAAAAAAAAAAA+AGG | + | chr3.2:77399023-77399042 | None:intergenic | 20.0% |
| !! | CCATTAAAATTTATACTACA+TGG | + | chr3.2:77401202-77401221 | None:intergenic | 20.0% |
| !! | GTTTGTAATATTCTTTCATT+TGG | - | chr3.2:77399570-77399589 | MS.gene06883:intron | 20.0% |
| !! | TAATAAGTACATGAATACAA+AGG | + | chr3.2:77401437-77401456 | None:intergenic | 20.0% |
| !! | TATGGATATAAACTACTTAT+AGG | - | chr3.2:77399648-77399667 | MS.gene06883:intron | 20.0% |
| !! | TGTAATTTCTTCATTATATC+TGG | + | chr3.2:77400618-77400637 | None:intergenic | 20.0% |
| !! | TTGGATAGTATAACTTAATT+GGG | - | chr3.2:77401553-77401572 | MS.gene06883:CDS | 20.0% |
| !! | TTTGGATAGTATAACTTAAT+TGG | - | chr3.2:77401552-77401571 | MS.gene06883:CDS | 20.0% |
| !!! | AAATCATTTTTTTAGGGTTT+AGG | + | chr3.2:77398732-77398751 | None:intergenic | 20.0% |
| !!! | AATCATTTTTTTAGGGTTTA+GGG | + | chr3.2:77398731-77398750 | None:intergenic | 20.0% |
| !!! | CCATGTAGTATAAATTTTAA+TGG | - | chr3.2:77401199-77401218 | MS.gene06883:intron | 20.0% |
| !!! | CCTTTTTTTTTTTTTTGTGT+TGG | - | chr3.2:77399020-77399039 | MS.gene06883:intron | 20.0% |
| !!! | CTTTTGTTTATTTGGAATTT+TGG | - | chr3.2:77401534-77401553 | MS.gene06883:CDS | 20.0% |
| !!! | TCTTATCTCTTTTGTTTATT+TGG | - | chr3.2:77401526-77401545 | MS.gene06883:CDS | 20.0% |
| !!! | TTTTTTGAGTAATGCATATA+TGG | - | chr3.2:77399630-77399649 | MS.gene06883:intron | 20.0% |
| ! | AAACAATCTACAAAACACAA+TGG | + | chr3.2:77400759-77400778 | None:intergenic | 25.0% |
| ! | ACTACCATTCAATAATAAGA+CGG | + | chr3.2:77400015-77400034 | None:intergenic | 25.0% |
| ! | AGATATCACTAATTGTATGT+GGG | - | chr3.2:77399057-77399076 | MS.gene06883:intron | 25.0% |
| ! | ATACTGCAGTTTAGTAATTT+AGG | + | chr3.2:77399252-77399271 | None:intergenic | 25.0% |
| ! | ATTAAAACTAGCAAAACTCT+TGG | + | chr3.2:77400063-77400082 | None:intergenic | 25.0% |
| ! | CATACAATTAGTGATATCTA+AGG | + | chr3.2:77399056-77399075 | None:intergenic | 25.0% |
| ! | TAATATTCTTTCATTTGGGA+GGG | - | chr3.2:77399575-77399594 | MS.gene06883:intron | 25.0% |
| ! | TAATGAACAATTGTGTAAAG+AGG | + | chr3.2:77398797-77398816 | None:intergenic | 25.0% |
| ! | TAGAGATTAGAGATAAGATA+TGG | - | chr3.2:77401259-77401278 | MS.gene06883:intron | 25.0% |
| ! | TAGATATCACTAATTGTATG+TGG | - | chr3.2:77399056-77399075 | MS.gene06883:intron | 25.0% |
| ! | TAGGTTAATTAATAGTCACA+TGG | + | chr3.2:77399233-77399252 | None:intergenic | 25.0% |
| ! | TATCTTGATTAAAAGGTTTG+AGG | + | chr3.2:77400209-77400228 | None:intergenic | 25.0% |
| ! | TATGTGTTGAAGATATTATC+TGG | + | chr3.2:77399970-77399989 | None:intergenic | 25.0% |
| ! | TGAGAAAAATACATGATATG+AGG | + | chr3.2:77400829-77400848 | None:intergenic | 25.0% |
| ! | TTCTGTATTTGAACCATTAT+GGG | + | chr3.2:77398440-77398459 | None:intergenic | 25.0% |
| ! | TTTCTGTATTTGAACCATTA+TGG | + | chr3.2:77398441-77398460 | None:intergenic | 25.0% |
| !! | GAATACATGATAATGTTGAT+TGG | - | chr3.2:77399788-77399807 | MS.gene06883:intron | 25.0% |
| !! | TCATGTATTTTTCTCATTTC+AGG | - | chr3.2:77400833-77400852 | MS.gene06883:intron | 25.0% |
| !! | TCGTGATTCTGATAATTTTA+TGG | - | chr3.2:77399141-77399160 | MS.gene06883:intron | 25.0% |
| !! | TGACATTTTTGTAAATCCAA+TGG | + | chr3.2:77400892-77400911 | None:intergenic | 25.0% |
| !!! | AAGAGGTACTAAAAAAAAAG+TGG | + | chr3.2:77398780-77398799 | None:intergenic | 25.0% |
| !!! | AGAGGTACTAAAAAAAAAGT+GGG | + | chr3.2:77398779-77398798 | None:intergenic | 25.0% |
| !!! | CTTCCTACATTTTAAAAAAG+AGG | + | chr3.2:77400435-77400454 | None:intergenic | 25.0% |
| !!! | TGTACTTTTTGAACATCTTA+TGG | + | chr3.2:77398579-77398598 | None:intergenic | 25.0% |
| AAACAAATCTTATTGCACCA+CGG | + | chr3.2:77400647-77400666 | None:intergenic | 30.0% | |
| AAAGAGGCTCTTCATTTATT+TGG | + | chr3.2:77400994-77401013 | None:intergenic | 30.0% | |
| AACCATTTAGCAACTATAAG+AGG | + | chr3.2:77399320-77399339 | None:intergenic | 30.0% | |
| AACTTGCATTATCTCAATGA+TGG | - | chr3.2:77401380-77401399 | MS.gene06883:intron | 30.0% | |
| AAGAGGCTCTTCATTTATTT+GGG | + | chr3.2:77400993-77401012 | None:intergenic | 30.0% | |
| AATAAAACATAGGGCTAATG+TGG | - | chr3.2:77401233-77401252 | MS.gene06883:intron | 30.0% | |
| AATATTCTTTCATTTGGGAG+GGG | - | chr3.2:77399576-77399595 | MS.gene06883:intron | 30.0% | |
| ACATATGGTGAATACTGAAT+AGG | - | chr3.2:77399693-77399712 | MS.gene06883:intron | 30.0% | |
| ACATTTAGATAACCTTGAGA+CGG | - | chr3.2:77400301-77400320 | MS.gene06883:intron | 30.0% | |
| ACTAAAAAAAAAGTGGGCAT+TGG | + | chr3.2:77398773-77398792 | None:intergenic | 30.0% | |
| AGAGAAAAACAATAGCTGTT+TGG | - | chr3.2:77399740-77399759 | MS.gene06883:intron | 30.0% | |
| ATTATCTCAATGATGGTCTT+TGG | - | chr3.2:77401387-77401406 | MS.gene06883:intron | 30.0% | |
| CTCTATACTAGAAAGTTTCT+CGG | + | chr3.2:77399769-77399788 | None:intergenic | 30.0% | |
| GAGAGAACATAAAGATCATA+CGG | - | chr3.2:77400089-77400108 | MS.gene06883:intron | 30.0% | |
| GTAATATTCTTTCATTTGGG+AGG | - | chr3.2:77399574-77399593 | MS.gene06883:intron | 30.0% | |
| TAAAACATGGAAGAGTTTCT+AGG | - | chr3.2:77400511-77400530 | MS.gene06883:intron | 30.0% | |
| TAATGACCAAAGTGAGAAAA+TGG | + | chr3.2:77400398-77400417 | None:intergenic | 30.0% | |
| TATACTACATGGCAATAAAG+TGG | + | chr3.2:77401191-77401210 | None:intergenic | 30.0% | |
| TATTAAAAATCAGCGGTAAC+TGG | + | chr3.2:77401583-77401602 | None:intergenic | 30.0% | |
| TCACGAACACTAAAAAACAA+AGG | + | chr3.2:77399480-77399499 | None:intergenic | 30.0% | |
| TCTCAAGGTTATCTAAATGT+GGG | + | chr3.2:77400301-77400320 | None:intergenic | 30.0% | |
| TTCAGAAAAGCAATCAACAA+GGG | - | chr3.2:77401344-77401363 | MS.gene06883:intron | 30.0% | |
| TTGAAGCTTAAACAGAATCA+CGG | + | chr3.2:77399090-77399109 | None:intergenic | 30.0% | |
| TTGGTGAATTAATGCATGTT+TGG | + | chr3.2:77399172-77399191 | None:intergenic | 30.0% | |
| TTTAAAAAAGAGGACGAATG+CGG | + | chr3.2:77400425-77400444 | None:intergenic | 30.0% | |
| TTTCAGAAAAGCAATCAACA+AGG | - | chr3.2:77401343-77401362 | MS.gene06883:intron | 30.0% | |
| ! | AAACAAACCATTCTAGGAAA+TGG | - | chr3.2:77400335-77400354 | MS.gene06883:intron | 30.0% |
| ! | AAAGTTTTCTCAGTTCTCAA+AGG | + | chr3.2:77400163-77400182 | None:intergenic | 30.0% |
| ! | AAGGTTTGAGGAGTATAAAT+AGG | + | chr3.2:77400197-77400216 | None:intergenic | 30.0% |
| ! | ACATGATAATGTTGATTGGT+TGG | - | chr3.2:77399792-77399811 | MS.gene06883:intron | 30.0% |
| ! | AGGTTTGAGGAGTATAAATA+GGG | + | chr3.2:77400196-77400215 | None:intergenic | 30.0% |
| ! | GAAACTCTTCCATGTTTTAT+AGG | + | chr3.2:77400510-77400529 | None:intergenic | 30.0% |
| ! | TAAAGTGGAAAACTTGTTTG+TGG | + | chr3.2:77401176-77401195 | None:intergenic | 30.0% |
| ! | TTGTAGTTCTATTTGCTTTG+AGG | - | chr3.2:77399350-77399369 | MS.gene06883:CDS | 30.0% |
| ! | TTTCAGATTTTCATCTGAAG+AGG | - | chr3.2:77398923-77398942 | MS.gene06883:intron | 30.0% |
| ! | TTTTGTAAATCCAATGGCAA+GGG | + | chr3.2:77400886-77400905 | None:intergenic | 30.0% |
| ! | TTTTTGTAAATCCAATGGCA+AGG | + | chr3.2:77400887-77400906 | None:intergenic | 30.0% |
| !! | TGGTGCAATAAGATTTGTTT+TGG | - | chr3.2:77400647-77400666 | MS.gene06883:intron | 30.0% |
| !!! | CGTCCTCTTTTTTAAAATGT+AGG | - | chr3.2:77400429-77400448 | MS.gene06883:intron | 30.0% |
| !!! | TAGCCCTATGTTTTATTTGA+GGG | + | chr3.2:77401230-77401249 | None:intergenic | 30.0% |
| !!! | TGCAATAAGATTTGTTTTGG+CGG | - | chr3.2:77400650-77400669 | MS.gene06883:intron | 30.0% |
| !!! | TTAGCCCTATGTTTTATTTG+AGG | + | chr3.2:77401231-77401250 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTAGTGTTCGTGA+TGG | - | chr3.2:77399480-77399499 | MS.gene06883:intron | 30.0% |
| AAAGCAATCAACAAGGGAAT+TGG | - | chr3.2:77401350-77401369 | MS.gene06883:intron | 35.0% | |
| AACTATAAGAGGTGACTTCT+TGG | + | chr3.2:77399309-77399328 | None:intergenic | 35.0% | |
| AACTGTACTGTTCATACCAA+AGG | - | chr3.2:77399828-77399847 | MS.gene06883:intron | 35.0% | |
| AAGAAGTTCAACTACTTTCG+TGG | - | chr3.2:77401320-77401339 | MS.gene06883:intron | 35.0% | |
| AAGCAATCAACAAGGGAATT+GGG | - | chr3.2:77401351-77401370 | MS.gene06883:intron | 35.0% | |
| ACTATAAGAGGTGACTTCTT+GGG | + | chr3.2:77399308-77399327 | None:intergenic | 35.0% | |
| ACTGTACTGTTCATACCAAA+GGG | - | chr3.2:77399829-77399848 | MS.gene06883:intron | 35.0% | |
| AGCAACATCAATGTTCTGAT+TGG | - | chr3.2:77399863-77399882 | MS.gene06883:intron | 35.0% | |
| AGCTCCCTCAAATAAAACAT+AGG | - | chr3.2:77401223-77401242 | MS.gene06883:intron | 35.0% | |
| ATTACTAAACTGCAGTATCC+AGG | - | chr3.2:77399254-77399273 | MS.gene06883:intron | 35.0% | |
| CAATCATCGAAACTGAAACT+AGG | + | chr3.2:77401289-77401308 | None:intergenic | 35.0% | |
| CACCTCTTATAGTTGCTAAA+TGG | - | chr3.2:77399315-77399334 | MS.gene06883:intron | 35.0% | |
| CTCAAGGTTATCTAAATGTG+GGG | + | chr3.2:77400300-77400319 | None:intergenic | 35.0% | |
| GCTCCCTCAAATAAAACATA+GGG | - | chr3.2:77401224-77401243 | MS.gene06883:intron | 35.0% | |
| GTCTCAAGGTTATCTAAATG+TGG | + | chr3.2:77400302-77400321 | None:intergenic | 35.0% | |
| TCACTAATTGTATGTGGGTT+TGG | - | chr3.2:77399062-77399081 | MS.gene06883:intron | 35.0% | |
| TTCACCATATGTGTTGAACA+CGG | + | chr3.2:77399685-77399704 | None:intergenic | 35.0% | |
| ! | AAACCATTCTAGGAAATGGA+GGG | - | chr3.2:77400339-77400358 | MS.gene06883:intron | 35.0% |
| ! | AAGAAATTACAAGTTGACCG+TGG | - | chr3.2:77400627-77400646 | MS.gene06883:CDS | 35.0% |
| ! | ATGTCAACCAGAGAGTATAA+TGG | + | chr3.2:77401035-77401054 | None:intergenic | 35.0% |
| ! | CCATGTTTTATAGGTGCTTT+TGG | + | chr3.2:77400501-77400520 | None:intergenic | 35.0% |
| ! | GGTTTGAGGAGTATAAATAG+GGG | + | chr3.2:77400195-77400214 | None:intergenic | 35.0% |
| ! | GTGCTTTTGGTCAAAGTATA+GGG | + | chr3.2:77400488-77400507 | None:intergenic | 35.0% |
| ! | TCTGCCGTCTTATTATTGAA+TGG | - | chr3.2:77400008-77400027 | MS.gene06883:intron | 35.0% |
| !! | CCAAAAGCACCTATAAAACA+TGG | - | chr3.2:77400498-77400517 | MS.gene06883:intron | 35.0% |
| !!! | ATGTTGTTTTTGCCTAACCA+CGG | - | chr3.2:77399111-77399130 | MS.gene06883:intron | 35.0% |
| !!! | GCAATAAGATTTGTTTTGGC+GGG | - | chr3.2:77400651-77400670 | MS.gene06883:intron | 35.0% |
| AACCACCAAGGCAATAACAA+TGG | + | chr3.2:77400375-77400394 | None:intergenic | 40.0% | |
| AGAGATAAGAAAAGCCACGA+TGG | + | chr3.2:77401516-77401535 | None:intergenic | 40.0% | |
| AGCAATCAACAAGGGAATTG+GGG | - | chr3.2:77401352-77401371 | MS.gene06883:intron | 40.0% | |
| CCTCTTACCATTATACTCTC+TGG | - | chr3.2:77401025-77401044 | MS.gene06883:intron | 40.0% | |
| CTTTCTCTCAAGCATAGTGA+TGG | - | chr3.2:77399941-77399960 | MS.gene06883:intron | 40.0% | |
| GTTCATACCAAAGGGCTATA+AGG | - | chr3.2:77399837-77399856 | MS.gene06883:intron | 40.0% | |
| TAGTCAGAACCATCTCAATC+TGG | - | chr3.2:77399437-77399456 | MS.gene06883:CDS | 40.0% | |
| TATTTGATGTGCTACCATCG+TGG | - | chr3.2:77401499-77401518 | MS.gene06883:CDS | 40.0% | |
| TCTCAATGATGGTCTTTGGA+AGG | - | chr3.2:77401391-77401410 | MS.gene06883:intron | 40.0% | |
| TGATCCGTGTTCAACACATA+TGG | - | chr3.2:77399678-77399697 | MS.gene06883:intron | 40.0% | |
| TTAGATAACCTTGAGACGGA+GGG | - | chr3.2:77400305-77400324 | MS.gene06883:intron | 40.0% | |
| TTCTCAGTTCTCAAAGGTTC+AGG | + | chr3.2:77400157-77400176 | None:intergenic | 40.0% | |
| TTTAGATAACCTTGAGACGG+AGG | - | chr3.2:77400304-77400323 | MS.gene06883:intron | 40.0% | |
| TTTCTCATTTCAGGCCATCA+TGG | - | chr3.2:77400842-77400861 | MS.gene06883:intron | 40.0% | |
| ! | AACCATTCTAGGAAATGGAG+GGG | - | chr3.2:77400340-77400359 | MS.gene06883:intron | 40.0% |
| ! | AACTTGTTTGTGGAAGGAAG+TGG | + | chr3.2:77401166-77401185 | None:intergenic | 40.0% |
| ! | ACAAGCCATTGTTATTGCCT+TGG | - | chr3.2:77400367-77400386 | MS.gene06883:intron | 40.0% |
| ! | CAAACCATTCTAGGAAATGG+AGG | - | chr3.2:77400338-77400357 | MS.gene06883:intron | 40.0% |
| ! | CCAGAGAGTATAATGGTAAG+AGG | + | chr3.2:77401028-77401047 | None:intergenic | 40.0% |
| ! | CTTTTGGTCAAAGTATAGGG+AGG | + | chr3.2:77400485-77400504 | None:intergenic | 40.0% |
| ! | GGAAGTATATCATCCAACAC+TGG | + | chr3.2:77399287-77399306 | None:intergenic | 40.0% |
| ! | GGTGCTTTTGGTCAAAGTAT+AGG | + | chr3.2:77400489-77400508 | None:intergenic | 40.0% |
| ! | GGTTCTGACTACAAGAACAA+CGG | + | chr3.2:77399428-77399447 | None:intergenic | 40.0% |
| ! | GTGGAAAACTTGTTTGTGGA+AGG | + | chr3.2:77401172-77401191 | None:intergenic | 40.0% |
| ! | GTGGTTCCATTTTCTCACTT+TGG | - | chr3.2:77400389-77400408 | MS.gene06883:intron | 40.0% |
| !! | ACGTCAAAGTATTGCAGATG+AGG | - | chr3.2:77398989-77399008 | MS.gene06883:intron | 40.0% |
| AAACACAATGGCAGTACCAC+AGG | + | chr3.2:77400747-77400766 | None:intergenic | 45.0% | |
| ACATTGATGGAGAAGTCGCA+AGG | + | chr3.2:77399520-77399539 | None:intergenic | 45.0% | |
| AGAGGTGGAGCTACATGTTT+AGG | - | chr3.2:77401129-77401148 | MS.gene06883:CDS | 45.0% | |
| CAGACATTATGCTCTGCAGT+TGG | - | chr3.2:77400542-77400561 | MS.gene06883:intron | 45.0% | |
| GAACCATCTCAATCTGGTTG+TGG | - | chr3.2:77399443-77399462 | MS.gene06883:CDS | 45.0% | |
| GGGGGAAAACAAACCATTCT+AGG | - | chr3.2:77400329-77400348 | MS.gene06883:intron | 45.0% | |
| GGTGCAAACATAATGTGTCC+TGG | - | chr3.2:77400672-77400691 | MS.gene06883:intron | 45.0% | |
| GTGAGAAAATGGAACCACCA+AGG | + | chr3.2:77400387-77400406 | None:intergenic | 45.0% | |
| GTGGAGCTACATGTTTAGGT+GGG | - | chr3.2:77401133-77401152 | MS.gene06883:CDS | 45.0% | |
| TCACCACAACCAGATTGAGA+TGG | + | chr3.2:77399449-77399468 | None:intergenic | 45.0% | |
| TGCTCAACCTTATAGCCCTT+TGG | + | chr3.2:77399847-77399866 | None:intergenic | 45.0% | |
| TGGAGCTACATGTTTAGGTG+GGG | - | chr3.2:77401134-77401153 | MS.gene06883:CDS | 45.0% | |
| ! | ACCATTCTAGGAAATGGAGG+GGG | - | chr3.2:77400341-77400360 | MS.gene06883:intron | 45.0% |
| ! | AGAGGCAGAGTTTCTGAAAG+AGG | + | chr3.2:77401010-77401029 | None:intergenic | 45.0% |
| ! | AGCCATTGTTATTGCCTTGG+TGG | - | chr3.2:77400370-77400389 | MS.gene06883:intron | 45.0% |
| ! | CTGTTTTCCTTCAGCCATGA+TGG | + | chr3.2:77400859-77400878 | None:intergenic | 45.0% |
| !! | CTTATGGTGCGTTGAGTTGA+AGG | + | chr3.2:77398563-77398582 | None:intergenic | 45.0% |
| !!! | TTGTTTTTGCCTAACCACGG+TGG | - | chr3.2:77399114-77399133 | MS.gene06883:intron | 45.0% |
| AAACAGCATGCCCTTGCCAT+TGG | - | chr3.2:77400873-77400892 | MS.gene06883:intron | 50.0% | |
| AATTGCACCATTGCTCGTGG+TGG | - | chr3.2:77398703-77398722 | MS.gene06883:CDS | 50.0% | |
| ACGCAACAGTGTAACTCTCG+AGG | + | chr3.2:77398467-77398486 | None:intergenic | 50.0% | |
| AGCAATTGCACCATTGCTCG+TGG | - | chr3.2:77398700-77398719 | MS.gene06883:CDS | 50.0% | |
| AGTCGCAAGGTAGGCATGTA+CGG | + | chr3.2:77399507-77399526 | None:intergenic | 50.0% | |
| ATAACCTTGAGACGGAGGGA+GGG | - | chr3.2:77400309-77400328 | MS.gene06883:intron | 50.0% | |
| CAACCTCGTGCAATTAGAGG+TGG | - | chr3.2:77401114-77401133 | MS.gene06883:CDS | 50.0% | |
| CCACAACCTCGTGCAATTAG+AGG | - | chr3.2:77401111-77401130 | MS.gene06883:CDS | 50.0% | |
| CCTCTAATTGCACGAGGTTG+TGG | + | chr3.2:77401114-77401133 | None:intergenic | 50.0% | |
| CGCAACAGTGTAACTCTCGA+GGG | + | chr3.2:77398466-77398485 | None:intergenic | 50.0% | |
| GGAGCTACATGTTTAGGTGG+GGG | - | chr3.2:77401135-77401154 | MS.gene06883:CDS | 50.0% | |
| GGTGGAGCTACATGTTTAGG+TGG | - | chr3.2:77401132-77401151 | MS.gene06883:CDS | 50.0% | |
| TCCAGGACTTGAACCAGTGT+TGG | - | chr3.2:77399271-77399290 | MS.gene06883:intron | 50.0% | |
| TCCCCCTCCATTTCCTAGAA+TGG | + | chr3.2:77400345-77400364 | None:intergenic | 50.0% | |
| TGATGGAGAAGTCGCAAGGT+AGG | + | chr3.2:77399516-77399535 | None:intergenic | 50.0% | |
| TTTCAGGCCATCATGGCTGA+AGG | - | chr3.2:77400849-77400868 | MS.gene06883:intron | 50.0% | |
| ! | GGTGTTCTGGATGAGGAAGT+GGG | - | chr3.2:77400711-77400730 | MS.gene06883:intron | 50.0% |
| ! | GTGTTCTGGATGAGGAAGTG+GGG | - | chr3.2:77400712-77400731 | MS.gene06883:intron | 50.0% |
| ! | TGTTCTGGATGAGGAAGTGG+GGG | - | chr3.2:77400713-77400732 | MS.gene06883:intron | 50.0% |
| !! | GTCCTGGTCTTACATCTCCT+GGG | - | chr3.2:77400688-77400707 | MS.gene06883:intron | 50.0% |
| !! | TCCAACACTGGTTCAAGTCC+TGG | + | chr3.2:77399275-77399294 | None:intergenic | 50.0% |
| !! | TCCTGGTCTTACATCTCCTG+GGG | - | chr3.2:77400689-77400708 | MS.gene06883:intron | 50.0% |
| !! | TGTCCTGGTCTTACATCTCC+TGG | - | chr3.2:77400687-77400706 | MS.gene06883:intron | 50.0% |
| AGAATCACGATGAGCCACCG+TGG | + | chr3.2:77399131-77399150 | None:intergenic | 55.0% | |
| GATAACCTTGAGACGGAGGG+AGG | - | chr3.2:77400308-77400327 | MS.gene06883:intron | 55.0% | |
| GCTCCACCTCTAATTGCACG+AGG | + | chr3.2:77401120-77401139 | None:intergenic | 55.0% | |
| TAACCTTGAGACGGAGGGAG+GGG | - | chr3.2:77400310-77400329 | MS.gene06883:intron | 55.0% | |
| ! | GGGTGTTCTGGATGAGGAAG+TGG | - | chr3.2:77400710-77400729 | MS.gene06883:intron | 55.0% |
| ! | TAGGGTACCACCACGAGCAA+TGG | + | chr3.2:77398713-77398732 | None:intergenic | 55.0% |
| !! | CCTGGTCTTACATCTCCTGG+GGG | - | chr3.2:77400690-77400709 | MS.gene06883:intron | 55.0% |
| !! | TACATCTCCTGGGGGTGTTC+TGG | - | chr3.2:77400698-77400717 | MS.gene06883:intron | 55.0% |
| AACCTTGAGACGGAGGGAGG+GGG | - | chr3.2:77400311-77400330 | MS.gene06883:intron | 60.0% | |
| AGTGGGGGCAGAATGTCCTG+TGG | - | chr3.2:77400728-77400747 | MS.gene06883:intron | 60.0% | |
| CACGATGAGCCACCGTGGTT+AGG | + | chr3.2:77399126-77399145 | None:intergenic | 60.0% | |
| CCCCCAGGAGATGTAAGACC+AGG | + | chr3.2:77400693-77400712 | None:intergenic | 60.0% | |
| TCCTCATCCAGAACACCCCC+AGG | + | chr3.2:77400708-77400727 | None:intergenic | 60.0% | |
| !! | TCCTGGGGGTGTTCTGGATG+AGG | - | chr3.2:77400704-77400723 | MS.gene06883:intron | 60.0% |
| TTCCCCCTCCCTCCGTCTCA+AGG | + | chr3.2:77400316-77400335 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77398431 | 77401660 | 77398431 | ID=MS.gene06883 |
| chr3.2 | mRNA | 77398431 | 77401660 | 77398431 | ID=MS.gene06883.t1;Parent=MS.gene06883 |
| chr3.2 | exon | 77401498 | 77401660 | 77401498 | ID=MS.gene06883.t1.exon1;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77401498 | 77401660 | 77401498 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77401081 | 77401162 | 77401081 | ID=MS.gene06883.t1.exon2;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77401081 | 77401162 | 77401081 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77400755 | 77400822 | 77400755 | ID=MS.gene06883.t1.exon3;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77400755 | 77400822 | 77400755 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77400554 | 77400651 | 77400554 | ID=MS.gene06883.t1.exon4;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77400554 | 77400651 | 77400554 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77399342 | 77399478 | 77399342 | ID=MS.gene06883.t1.exon5;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77399342 | 77399478 | 77399342 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77399169 | 77399236 | 77399169 | ID=MS.gene06883.t1.exon6;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77399169 | 77399236 | 77399169 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77398679 | 77398742 | 77398679 | ID=MS.gene06883.t1.exon7;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77398679 | 77398742 | 77398679 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| chr3.2 | exon | 77398431 | 77398448 | 77398431 | ID=MS.gene06883.t1.exon8;Parent=MS.gene06883.t1 |
| chr3.2 | CDS | 77398431 | 77398448 | 77398431 | ID=cds.MS.gene06883.t1;Parent=MS.gene06883.t1 |
| Gene Sequence |
| Protein sequence |
