Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97738.t1 | XP_003612810.1 | 90.5 | 273 | 26 | 0 | 1 | 273 | 1 | 273 | 2.60E-134 | 488.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97738.t1 | G7KCC3 | 90.5 | 273 | 26 | 0 | 1 | 273 | 1 | 273 | 1.8e-134 | 488.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene97738 | -0.836789 | 7.61E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene97738 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene97738 | 0.807698 | 4.45E-50 | -1.69E-46 |
| MS.gene049863 | MS.gene97738 | 0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene04988 | MS.gene97738 | 0.812354 | 4.42E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene97738 | 0.845901 | 3.04E-59 | -1.69E-46 |
| MS.gene050303 | MS.gene97738 | 0.825423 | 4.73E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene97738 | 0.812372 | 4.38E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene97738 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene051243 | MS.gene97738 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene97738 | 0.812621 | 3.87E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene97738 | 0.804388 | 2.21E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene97738 | 0.80464 | 1.96E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene97738 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene051597 | MS.gene97738 | 0.814364 | 1.60E-51 | -1.69E-46 |
| MS.gene051633 | MS.gene97738 | 0.807367 | 5.23E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene97738 | 0.805889 | 1.07E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene97738 | 0.827205 | 1.78E-54 | -1.69E-46 |
| MS.gene051902 | MS.gene97738 | 0.806098 | 9.70E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene97738 | 0.830328 | 3.13E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene97738 | 0.811262 | 7.64E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene97738 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene97738 | -0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene97738 | 0.826424 | 2.73E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene97738 | 0.848437 | 6.13E-60 | -1.69E-46 |
| MS.gene053080 | MS.gene97738 | 0.826613 | 2.46E-54 | -1.69E-46 |
| MS.gene053109 | MS.gene97738 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene97738 | 0.803471 | 3.43E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene97738 | 0.805112 | 1.56E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene97738 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene97738 | 0.822966 | 1.78E-53 | -1.69E-46 |
| MS.gene054946 | MS.gene97738 | -0.800643 | 1.31E-48 | -1.69E-46 |
| MS.gene055424 | MS.gene97738 | 0.803761 | 2.99E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene97738 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene055603 | MS.gene97738 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene97738 | 0.824508 | 7.77E-54 | -1.69E-46 |
| MS.gene056091 | MS.gene97738 | 0.833502 | 5.14E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene97738 | 0.85696 | 2.26E-62 | -1.69E-46 |
| MS.gene056605 | MS.gene97738 | 0.857159 | 1.97E-62 | -1.69E-46 |
| MS.gene056631 | MS.gene97738 | 0.839111 | 1.93E-57 | -1.69E-46 |
| MS.gene05689 | MS.gene97738 | 0.817297 | 3.55E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene97738 | 0.833913 | 4.06E-56 | -1.69E-46 |
| MS.gene057079 | MS.gene97738 | 0.853031 | 3.13E-61 | -1.69E-46 |
| MS.gene057140 | MS.gene97738 | 0.812461 | 4.19E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene97738 | 0.811041 | 8.54E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene97738 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene97738 | 0.83774 | 4.35E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene97738 | 0.835356 | 1.76E-56 | -1.69E-46 |
| MS.gene057890 | MS.gene97738 | -0.818131 | 2.30E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene97738 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene97738 | 0.846407 | 2.21E-59 | -1.69E-46 |
| MS.gene058126 | MS.gene97738 | 0.824854 | 6.44E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene97738 | 0.853139 | 2.91E-61 | -1.69E-46 |
| MS.gene05953 | MS.gene97738 | 0.811959 | 5.39E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene97738 | 0.801033 | 1.09E-48 | -1.69E-46 |
| MS.gene059830 | MS.gene97738 | 0.830261 | 3.25E-55 | -1.69E-46 |
| MS.gene059935 | MS.gene97738 | 0.817568 | 3.08E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene97738 | 0.82643 | 2.73E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene97738 | 0.829853 | 4.08E-55 | -1.69E-46 |
| MS.gene060297 | MS.gene97738 | 0.846994 | 1.53E-59 | -1.69E-46 |
| MS.gene060365 | MS.gene97738 | 0.81995 | 8.87E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene97738 | 0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene97738 | 0.829515 | 4.93E-55 | -1.69E-46 |
| MS.gene060763 | MS.gene97738 | 0.827348 | 1.64E-54 | -1.69E-46 |
| MS.gene060830 | MS.gene97738 | 0.842686 | 2.22E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97738.t1 | MTR_5g029310 | 90.476 | 273 | 26 | 0 | 1 | 273 | 1 | 273 | 2.17e-175 | 487 |
| MS.gene97738.t1 | MTR_5g029310 | 90.146 | 274 | 26 | 1 | 1 | 273 | 1 | 274 | 1.90e-173 | 482 |
| MS.gene97738.t1 | MTR_5g029290 | 58.947 | 95 | 27 | 2 | 143 | 237 | 43 | 125 | 9.97e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAACAACGATTTC+TGG | 0.136302 | 5.1:-19866500 | MS.gene97738:CDS |
| AGAGAAAAGGTTGAAGATTT+TGG | 0.139079 | 5.1:-19866846 | MS.gene97738:CDS |
| AACTCTGGTGTGTCGTATTC+TGG | 0.273236 | 5.1:-19866770 | MS.gene97738:CDS |
| TCCAACTTTGAATCAATATC+AGG | 0.279193 | 5.1:+19866995 | None:intergenic |
| TTGGAGCAAATTAATCAATA+TGG | 0.280579 | 5.1:-19866827 | MS.gene97738:CDS |
| CATCCATATTCTAGAGAGTT+AGG | 0.302253 | 5.1:-19864312 | None:intergenic |
| GAAACTCAAAATGTGCATAA+TGG | 0.302388 | 5.1:-19866932 | MS.gene97738:CDS |
| TCACCTAACTCTCTAGAATA+TGG | 0.317659 | 5.1:+19864309 | None:intergenic |
| GGATCAATGCACATCAATTC+CGG | 0.320605 | 5.1:-19866660 | MS.gene97738:CDS |
| TTGAAATTTCAACTACTTCA+AGG | 0.362528 | 5.1:-19867129 | MS.gene97738:intron |
| AAACTCAAAATGTGCATAAT+GGG | 0.362750 | 5.1:-19866931 | MS.gene97738:CDS |
| TAATGATTATACTGCGGAAA+AGG | 0.365046 | 5.1:-19866600 | MS.gene97738:CDS |
| GGTTGCTCTGTTGGTGGGTC+GGG | 0.370289 | 5.1:-19866638 | MS.gene97738:CDS |
| CCTTGTTTAGATTCAACAAT+TGG | 0.378407 | 5.1:-19866959 | MS.gene97738:CDS |
| GGTAATAAAGTGTTGATTCC+TGG | 0.383675 | 5.1:-19866578 | MS.gene97738:CDS |
| GATTCTGAAACTGAACAAAT+TGG | 0.402034 | 5.1:-19864891 | MS.gene97738:CDS |
| TATCTTGCTGAACAATCAAT+TGG | 0.405329 | 5.1:-19864396 | MS.gene97738:CDS |
| CTCTTCAAGTTCATAGTACT+CGG | 0.405743 | 5.1:+19866865 | None:intergenic |
| AATCAACAATATGCAGCAAC+TGG | 0.408282 | 5.1:-19866797 | MS.gene97738:CDS |
| TGGGTAAAGATGGAGATCTA+TGG | 0.416837 | 5.1:-19867359 | MS.gene97738:CDS |
| GGGTTGCTCTGTTGGTGGGT+CGG | 0.417492 | 5.1:-19866639 | MS.gene97738:CDS |
| CTGAATGCTTGGTATTCAGC+TGG | 0.428215 | 5.1:-19864840 | MS.gene97738:CDS |
| TATTCAGCTGGCTTCCATAC+CGG | 0.442511 | 5.1:-19864828 | MS.gene97738:CDS |
| TCAATTCCGGGTTGCTCTGT+TGG | 0.450395 | 5.1:-19866647 | MS.gene97738:CDS |
| ATTCCGGGTTGCTCTGTTGG+TGG | 0.463844 | 5.1:-19866644 | MS.gene97738:CDS |
| TTACTGCTGTTCTGAATGCT+TGG | 0.464273 | 5.1:-19864851 | MS.gene97738:CDS |
| CAACATGAACACACAACATT+CGG | 0.469002 | 5.1:+19866707 | None:intergenic |
| ACTATGAACTTGAAGAGAAA+AGG | 0.469572 | 5.1:-19866859 | MS.gene97738:CDS |
| GATCAATGCACATCAATTCC+GGG | 0.470986 | 5.1:-19866659 | MS.gene97738:CDS |
| TTCCGGGTTGCTCTGTTGGT+GGG | 0.489093 | 5.1:-19866643 | MS.gene97738:CDS |
| TCTGTTGGTGGGTCGGGTGT+CGG | 0.494239 | 5.1:-19866632 | MS.gene97738:CDS |
| TCCTGATATTGATTCAAAGT+TGG | 0.501063 | 5.1:-19866996 | MS.gene97738:CDS |
| CGACGCAATCTCTTCTTACA+AGG | 0.504755 | 5.1:-19867307 | MS.gene97738:intron |
| ATTCAGCTGGCTTCCATACC+GGG | 0.504838 | 5.1:-19864827 | MS.gene97738:CDS |
| AAATTAATCAATATGGTGGT+TGG | 0.517556 | 5.1:-19866820 | MS.gene97738:CDS |
| AATGATTATACTGCGGAAAA+GGG | 0.519609 | 5.1:-19866599 | MS.gene97738:CDS |
| GCTCAAACAATGGGTAAAGA+TGG | 0.521554 | 5.1:-19867369 | None:intergenic |
| GGAGATGTTAATGTAAATGA+AGG | 0.522577 | 5.1:-19866479 | MS.gene97738:intron |
| CTAACTCTCTAGAATATGGA+TGG | 0.524846 | 5.1:+19864313 | None:intergenic |
| GGGTAAAGATGGAGATCTAT+GGG | 0.534204 | 5.1:-19867358 | MS.gene97738:CDS |
| CCAATTGTTGAATCTAAACA+AGG | 0.539538 | 5.1:+19866959 | None:intergenic |
| CACTTGAAGATCTCTCATCT+AGG | 0.539768 | 5.1:+19864351 | None:intergenic |
| TCCGCAGTATAATCATTACA+AGG | 0.549192 | 5.1:+19866605 | None:intergenic |
| AAGATACGTGAGATGGCGAT+GGG | 0.549503 | 5.1:-19866545 | MS.gene97738:CDS |
| AATGGGTATTCTTATGAGCA+AGG | 0.550782 | 5.1:-19866914 | MS.gene97738:CDS |
| TCTGAAACTGAACAAATTGG+TGG | 0.562700 | 5.1:-19864888 | MS.gene97738:CDS |
| GAGCAAATTAATCAATATGG+TGG | 0.566754 | 5.1:-19866824 | MS.gene97738:CDS |
| GCAGCAACTGGGTTGAACTC+TGG | 0.568033 | 5.1:-19866785 | MS.gene97738:CDS |
| GACCCACCAACAGAGCAACC+CGG | 0.586706 | 5.1:+19866641 | None:intergenic |
| GTGTTGATTCCTGGTGGAGA+TGG | 0.591707 | 5.1:-19866569 | MS.gene97738:CDS |
| TAAGATACGTGAGATGGCGA+TGG | 0.591727 | 5.1:-19866546 | MS.gene97738:CDS |
| ATCAACAATATGCAGCAACT+GGG | 0.593424 | 5.1:-19866796 | MS.gene97738:CDS |
| GATACGTGAGATGGCGATGG+GGG | 0.607202 | 5.1:-19866543 | MS.gene97738:CDS |
| TAACTCTCTAGAATATGGAT+GGG | 0.614522 | 5.1:+19864314 | None:intergenic |
| CGTATCTTACCATCTCCACC+AGG | 0.620615 | 5.1:+19866560 | None:intergenic |
| AGATGGTAAGATACGTGAGA+TGG | 0.625345 | 5.1:-19866552 | MS.gene97738:CDS |
| ACAAATTGGTGGCTCAGAGA+CGG | 0.626621 | 5.1:-19864877 | MS.gene97738:CDS |
| CTAGATGAGAGATCTTCAAG+TGG | 0.639257 | 5.1:-19864350 | MS.gene97738:CDS |
| AATAAAGTGTTGATTCCTGG+TGG | 0.645556 | 5.1:-19866575 | MS.gene97738:CDS |
| AGATACGTGAGATGGCGATG+GGG | 0.695008 | 5.1:-19866544 | MS.gene97738:CDS |
| ACCTTGTAATGATTATACTG+CGG | 0.710870 | 5.1:-19866606 | MS.gene97738:CDS |
| ACAGCACATTGACTAAAACA+CGG | 0.730291 | 5.1:+19866683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTTTTTGAAATTAAAT+TGG | + | chr5.1:19864576-19864595 | None:intergenic | 10.0% |
| !!! | GATTTTTTTGAAATTAAATT+GGG | + | chr5.1:19864575-19864594 | None:intergenic | 10.0% |
| !!! | GATTAATCAATTGATTTTTT+GGG | - | chr5.1:19866319-19866338 | MS.gene97738:intron | 15.0% |
| !!! | TACTTTTTTGTATAGATAAA+TGG | - | chr5.1:19866670-19866689 | MS.gene97738:CDS | 15.0% |
| !!! | TGATTAATCAATTGATTTTT+TGG | - | chr5.1:19866318-19866337 | MS.gene97738:intron | 15.0% |
| !!! | TGTTTTATTGTTGTAATTTT+GGG | + | chr5.1:19865713-19865732 | None:intergenic | 15.0% |
| !! | ACAAAATAAAAATACGTATC+TGG | - | chr5.1:19866989-19867008 | MS.gene97738:CDS | 20.0% |
| !! | ATCAAAATATAGGAAATGAT+AGG | + | chr5.1:19866265-19866284 | None:intergenic | 20.0% |
| !! | GCATATTAAACATTTAAGAA+CGG | + | chr5.1:19866557-19866576 | None:intergenic | 20.0% |
| !! | TAATTCAGATAAAAAGAAAG+AGG | - | chr5.1:19866760-19866779 | MS.gene97738:CDS | 20.0% |
| !! | TATATTCAATAACAAAAGCA+TGG | + | chr5.1:19865252-19865271 | None:intergenic | 20.0% |
| !! | TCAAAATATAGGAAATGATA+GGG | + | chr5.1:19866264-19866283 | None:intergenic | 20.0% |
| !!! | CTGTTTTATTGTTGTAATTT+TGG | + | chr5.1:19865714-19865733 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCTTTAAAATGAA+AGG | - | chr5.1:19865371-19865390 | MS.gene97738:intron | 20.0% |
| !!! | TATTTTCTTGTATAACAATG+AGG | + | chr5.1:19866912-19866931 | None:intergenic | 20.0% |
| !!! | TTATGTAATTTGATGATTGA+AGG | - | chr5.1:19866446-19866465 | MS.gene97738:intron | 20.0% |
| ! | AAACTCAAAATGTGCATAAT+GGG | - | chr5.1:19864742-19864761 | MS.gene97738:intron | 25.0% |
| ! | AAATTAATCAATATGGTGGT+TGG | - | chr5.1:19864853-19864872 | MS.gene97738:CDS | 25.0% |
| ! | AAATTTGATTGAGTAGGTAA+AGG | + | chr5.1:19864422-19864441 | None:intergenic | 25.0% |
| ! | ATTAATCTTCACTAAAACAG+AGG | + | chr5.1:19867065-19867084 | None:intergenic | 25.0% |
| ! | GATTGATTATTAATTGACTG+TGG | - | chr5.1:19865762-19865781 | MS.gene97738:intron | 25.0% |
| ! | TATTACAGAAGATATACGTT+AGG | - | chr5.1:19865685-19865704 | MS.gene97738:intron | 25.0% |
| ! | TCATAAATCAATTCCTCATT+AGG | - | chr5.1:19866042-19866061 | MS.gene97738:intron | 25.0% |
| ! | TCCATGATATAAGGAATTTA+GGG | + | chr5.1:19865913-19865932 | None:intergenic | 25.0% |
| ! | TGTTCATATAACCATAAATC+CGG | + | chr5.1:19865398-19865417 | None:intergenic | 25.0% |
| ! | TTATTAGATCTTTCCTTCTT+AGG | - | chr5.1:19866581-19866600 | MS.gene97738:CDS | 25.0% |
| ! | TTCCATGATATAAGGAATTT+AGG | + | chr5.1:19865914-19865933 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTACTTCA+AGG | - | chr5.1:19864544-19864563 | MS.gene97738:intron | 25.0% |
| ! | TTGGAGCAAATTAATCAATA+TGG | - | chr5.1:19864846-19864865 | MS.gene97738:CDS | 25.0% |
| ! | TTTCTGCTGAATAAGAAAAA+GGG | + | chr5.1:19864469-19864488 | None:intergenic | 25.0% |
| !! | TGATTAGTCAGTTATCATTA+GGG | + | chr5.1:19865863-19865882 | None:intergenic | 25.0% |
| !! | TTGATTAGTCAGTTATCATT+AGG | + | chr5.1:19865864-19865883 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGAATAAGAAAA+AGG | + | chr5.1:19864470-19864489 | None:intergenic | 25.0% |
| !!! | TGAAATTAGGTTGAATTGAA+AGG | + | chr5.1:19864445-19864464 | None:intergenic | 25.0% |
| !!! | TTCTGATTCTTGTTTGTTTT+TGG | + | chr5.1:19864505-19864524 | None:intergenic | 25.0% |
| !!! | TTTCTTTAAAATGAAAGGAC+CGG | - | chr5.1:19865376-19865395 | MS.gene97738:intron | 25.0% |
| AAAACAGAGGTTAAAGAGTT+CGG | + | chr5.1:19867052-19867071 | None:intergenic | 30.0% | |
| AATAGAAGAGAAGAGAAGAA+AGG | + | chr5.1:19864397-19864416 | None:intergenic | 30.0% | |
| AATGATTATACTGCGGAAAA+GGG | - | chr5.1:19865074-19865093 | MS.gene97738:intron | 30.0% | |
| ACCAAATACGAAGATATTCT+TGG | - | chr5.1:19866697-19866716 | MS.gene97738:CDS | 30.0% | |
| ACCCTAAATTCCTTATATCA+TGG | - | chr5.1:19865909-19865928 | MS.gene97738:intron | 30.0% | |
| ACCTTGTAATGATTATACTG+CGG | - | chr5.1:19865067-19865086 | MS.gene97738:intron | 30.0% | |
| ACTATGAACTTGAAGAGAAA+AGG | - | chr5.1:19864814-19864833 | MS.gene97738:intron | 30.0% | |
| ACTATTAGAACAACGATTTC+TGG | - | chr5.1:19865173-19865192 | MS.gene97738:intron | 30.0% | |
| AGAATAAACTTTCCACACTT+TGG | - | chr5.1:19866005-19866024 | MS.gene97738:intron | 30.0% | |
| AGTAGTACATGCATATTGTT+AGG | - | chr5.1:19865611-19865630 | MS.gene97738:intron | 30.0% | |
| ATTGAAGCTATGATGATAAC+AGG | - | chr5.1:19867254-19867273 | MS.gene97738:intron | 30.0% | |
| CAAACCTAAAGAATATCAGA+AGG | + | chr5.1:19865522-19865541 | None:intergenic | 30.0% | |
| CCAAATACGAAGATATTCTT+GGG | - | chr5.1:19866698-19866717 | MS.gene97738:CDS | 30.0% | |
| CCAATTGTTGAATCTAAACA+AGG | + | chr5.1:19864717-19864736 | None:intergenic | 30.0% | |
| GAAACTCAAAATGTGCATAA+TGG | - | chr5.1:19864741-19864760 | MS.gene97738:intron | 30.0% | |
| GAAAGGAAATTTGATTGAGT+AGG | + | chr5.1:19864428-19864447 | None:intergenic | 30.0% | |
| GAATAAACTTTCCACACTTT+GGG | - | chr5.1:19866006-19866025 | MS.gene97738:intron | 30.0% | |
| GAGCAAATTAATCAATATGG+TGG | - | chr5.1:19864849-19864868 | MS.gene97738:CDS | 30.0% | |
| GATAGGGAAATAATATGACA+TGG | + | chr5.1:19866248-19866267 | None:intergenic | 30.0% | |
| GGAGATGTTAATGTAAATGA+AGG | - | chr5.1:19865194-19865213 | MS.gene97738:intron | 30.0% | |
| TAAGAAAAAGGGGTGAAATT+AGG | + | chr5.1:19864458-19864477 | None:intergenic | 30.0% | |
| TAATGATTATACTGCGGAAA+AGG | - | chr5.1:19865073-19865092 | MS.gene97738:intron | 30.0% | |
| TATCTTGCTGAACAATCAAT+TGG | - | chr5.1:19867277-19867296 | MS.gene97738:intron | 30.0% | |
| TCAATGGTTATACGAAAGAT+AGG | + | chr5.1:19867239-19867258 | None:intergenic | 30.0% | |
| TCAGTTATCATTAGGGATTA+GGG | + | chr5.1:19865856-19865875 | None:intergenic | 30.0% | |
| TCCAACTTTGAATCAATATC+AGG | + | chr5.1:19864681-19864700 | None:intergenic | 30.0% | |
| TGAGCAATTCTGTTATAAGA+GGG | + | chr5.1:19866212-19866231 | None:intergenic | 30.0% | |
| TGTGGAAAGTTTATTCTAGA+AGG | + | chr5.1:19866002-19866021 | None:intergenic | 30.0% | |
| TGTTATCATCATAGCTTCAA+TGG | + | chr5.1:19867255-19867274 | None:intergenic | 30.0% | |
| TTCTGCTGAATAAGAAAAAG+GGG | + | chr5.1:19864468-19864487 | None:intergenic | 30.0% | |
| TTTGACAAAAACTTACTTCC+CGG | + | chr5.1:19866867-19866886 | None:intergenic | 30.0% | |
| TTTGCCTTCTGATATTCTTT+AGG | - | chr5.1:19865515-19865534 | MS.gene97738:intron | 30.0% | |
| ! | AGAGAAAAGGTTGAAGATTT+TGG | - | chr5.1:19864827-19864846 | MS.gene97738:CDS | 30.0% |
| ! | CCTTGTTTAGATTCAACAAT+TGG | - | chr5.1:19864714-19864733 | MS.gene97738:intron | 30.0% |
| ! | GAATTTAGAGCAATAGAGAA+AGG | - | chr5.1:19865737-19865756 | MS.gene97738:intron | 30.0% |
| ! | GTGGAAAGTTTATTCTAGAA+GGG | + | chr5.1:19866001-19866020 | None:intergenic | 30.0% |
| ! | TCAACGTTTTCTTCAATGAT+TGG | + | chr5.1:19864528-19864547 | None:intergenic | 30.0% |
| ! | TGGAAAGTTTATTCTAGAAG+GGG | + | chr5.1:19866000-19866019 | None:intergenic | 30.0% |
| ! | TTCTTTAGGTTTGAATGCTA+AGG | - | chr5.1:19865529-19865548 | MS.gene97738:intron | 30.0% |
| !! | CAGTGGTGTTATCAAAATAT+AGG | + | chr5.1:19866275-19866294 | None:intergenic | 30.0% |
| !! | GATTCTGAAACTGAACAAAT+TGG | - | chr5.1:19866782-19866801 | MS.gene97738:CDS | 30.0% |
| !! | TAACTCTCTAGAATATGGAT+GGG | + | chr5.1:19867362-19867381 | None:intergenic | 30.0% |
| !! | TCCTGATATTGATTCAAAGT+TGG | - | chr5.1:19864677-19864696 | MS.gene97738:intron | 30.0% |
| !!! | AAGGATTTTTTATGTGATCC+TGG | - | chr5.1:19865548-19865567 | MS.gene97738:intron | 30.0% |
| !!! | ATAGCTACTTTTTGTTGTTC+TGG | - | chr5.1:19865463-19865482 | MS.gene97738:intron | 30.0% |
| !!! | TAAGAGGTTTTGTTGTAACA+AGG | - | chr5.1:19865323-19865342 | MS.gene97738:intron | 30.0% |
| !!! | TGATTCTTGTTTGTTTTTGG+CGG | + | chr5.1:19864502-19864521 | None:intergenic | 30.0% |
| AAATGAAAGGACCGGATTTA+TGG | - | chr5.1:19865384-19865403 | MS.gene97738:intron | 35.0% | |
| AATACGTATCTGGATTGTTG+TGG | - | chr5.1:19866999-19867018 | MS.gene97738:CDS | 35.0% | |
| AATCAACAATATGCAGCAAC+TGG | - | chr5.1:19864876-19864895 | MS.gene97738:CDS | 35.0% | |
| AATGGGTATTCTTATGAGCA+AGG | - | chr5.1:19864759-19864778 | MS.gene97738:intron | 35.0% | |
| ATAGCATGCTTCTACAAACA+TGG | + | chr5.1:19866515-19866534 | None:intergenic | 35.0% | |
| ATATGACATGGAAGAGATTG+AGG | + | chr5.1:19866236-19866255 | None:intergenic | 35.0% | |
| ATCAACAATATGCAGCAACT+GGG | - | chr5.1:19864877-19864896 | MS.gene97738:CDS | 35.0% | |
| CAAAAAAGTAAAGCCACTGA+AGG | + | chr5.1:19866660-19866679 | None:intergenic | 35.0% | |
| CAAATGACCTAAACCTAAGA+AGG | + | chr5.1:19866597-19866616 | None:intergenic | 35.0% | |
| CAACATGAACACACAACATT+CGG | + | chr5.1:19864969-19864988 | None:intergenic | 35.0% | |
| CATATGTTGAAATTGTGTCC+TGG | - | chr5.1:19866392-19866411 | MS.gene97738:intron | 35.0% | |
| CCCAAGAATATCTTCGTATT+TGG | + | chr5.1:19866701-19866720 | None:intergenic | 35.0% | |
| CTTCTTAGGTTTAGGTCATT+TGG | - | chr5.1:19866595-19866614 | MS.gene97738:CDS | 35.0% | |
| GATCTTTCCTTCTTAGGTTT+AGG | - | chr5.1:19866587-19866606 | MS.gene97738:CDS | 35.0% | |
| GATTGTTGTGGCATTTAAGT+AGG | - | chr5.1:19867011-19867030 | MS.gene97738:CDS | 35.0% | |
| GCAACTGTTTCCATGATATA+AGG | + | chr5.1:19865922-19865941 | None:intergenic | 35.0% | |
| GCAGAATATAACAAAACACC+AGG | + | chr5.1:19866413-19866432 | None:intergenic | 35.0% | |
| GTCAGTTATCATTAGGGATT+AGG | + | chr5.1:19865857-19865876 | None:intergenic | 35.0% | |
| GTGAGCAATTCTGTTATAAG+AGG | + | chr5.1:19866213-19866232 | None:intergenic | 35.0% | |
| TATGACATGGAAGAGATTGA+GGG | + | chr5.1:19866235-19866254 | None:intergenic | 35.0% | |
| TCCGCAGTATAATCATTACA+AGG | + | chr5.1:19865071-19865090 | None:intergenic | 35.0% | |
| TTCAACATATGCAAGCACAA+AGG | + | chr5.1:19866383-19866402 | None:intergenic | 35.0% | |
| ! | ACAGCACATTGACTAAAACA+CGG | + | chr5.1:19864993-19865012 | None:intergenic | 35.0% |
| ! | CTCTTCAAGTTCATAGTACT+CGG | + | chr5.1:19864811-19864830 | None:intergenic | 35.0% |
| ! | CTTAAGATTGATGCTCTAAG+AGG | - | chr5.1:19865307-19865326 | MS.gene97738:intron | 35.0% |
| ! | GATATAAGGAATTTAGGGTG+AGG | + | chr5.1:19865908-19865927 | None:intergenic | 35.0% |
| ! | TCTGAAACTGAACAAATTGG+TGG | - | chr5.1:19866785-19866804 | MS.gene97738:CDS | 35.0% |
| ! | TGTTTGTAGAAGCATGCTAT+TGG | - | chr5.1:19866515-19866534 | MS.gene97738:CDS | 35.0% |
| ! | TTTGAGTTCTGATTTAGCCA+TGG | - | chr5.1:19866475-19866494 | MS.gene97738:intron | 35.0% |
| !! | AATAAAGTGTTGATTCCTGG+TGG | - | chr5.1:19865098-19865117 | MS.gene97738:intron | 35.0% |
| !! | CTAACTCTCTAGAATATGGA+TGG | + | chr5.1:19867363-19867382 | None:intergenic | 35.0% |
| !! | GGTAATAAAGTGTTGATTCC+TGG | - | chr5.1:19865095-19865114 | MS.gene97738:intron | 35.0% |
| AATCAATCCTCACACACAAC+TGG | - | chr5.1:19865942-19865961 | MS.gene97738:intron | 40.0% | |
| ACTGTGGAATGTTTACAGAG+AGG | - | chr5.1:19865778-19865797 | MS.gene97738:intron | 40.0% | |
| AGAGTTTCATCTCTTCTCTG+AGG | + | chr5.1:19866126-19866145 | None:intergenic | 40.0% | |
| AGATGGTAAGATACGTGAGA+TGG | - | chr5.1:19865121-19865140 | MS.gene97738:intron | 40.0% | |
| AGTTAGTAACCGCTTTGGTT+GGG | + | chr5.1:19866154-19866173 | None:intergenic | 40.0% | |
| ATCAGTTGCACAAGTCCATT+AGG | + | chr5.1:19866302-19866321 | None:intergenic | 40.0% | |
| CAAAAACTTACTTCCCGGTA+TGG | + | chr5.1:19866862-19866881 | None:intergenic | 40.0% | |
| CAAAGGTCGCAAAATGTGTT+AGG | + | chr5.1:19866366-19866385 | None:intergenic | 40.0% | |
| CACTCTCATGCTCATAAATG+CGG | - | chr5.1:19865276-19865295 | MS.gene97738:intron | 40.0% | |
| CACTTGAAGATCTCTCATCT+AGG | + | chr5.1:19867325-19867344 | None:intergenic | 40.0% | |
| CTAGATGAGAGATCTTCAAG+TGG | - | chr5.1:19867323-19867342 | MS.gene97738:CDS | 40.0% | |
| CTAGCATGTTGTTATGTAGC+AGG | - | chr5.1:19866935-19866954 | MS.gene97738:CDS | 40.0% | |
| CTGTGGAATGTTTACAGAGA+GGG | - | chr5.1:19865779-19865798 | MS.gene97738:intron | 40.0% | |
| GATCAATGCACATCAATTCC+GGG | - | chr5.1:19865014-19865033 | MS.gene97738:intron | 40.0% | |
| GGACACTCAAATGAGAATGT+AGG | + | chr5.1:19866345-19866364 | None:intergenic | 40.0% | |
| GGATCAATGCACATCAATTC+CGG | - | chr5.1:19865013-19865032 | MS.gene97738:intron | 40.0% | |
| GGGTAAAGATGGAGATCTAT+GGG | - | chr5.1:19864315-19864334 | MS.gene97738:CDS | 40.0% | |
| TAAAGCCACTGAAGGACAAA+AGG | + | chr5.1:19866652-19866671 | None:intergenic | 40.0% | |
| TAACACCACTGTCTACCTAA+TGG | - | chr5.1:19866284-19866303 | MS.gene97738:intron | 40.0% | |
| TCAGTGCACAAAATAGATCC+AGG | + | chr5.1:19865569-19865588 | None:intergenic | 40.0% | |
| TGGAATCATGACTAGTACCA+TGG | + | chr5.1:19866495-19866514 | None:intergenic | 40.0% | |
| TGGGTAAAGATGGAGATCTA+TGG | - | chr5.1:19864314-19864333 | MS.gene97738:CDS | 40.0% | |
| ! | TATTCTAGAAGGGGCAAAAG+CGG | + | chr5.1:19865991-19866010 | None:intergenic | 40.0% |
| ! | TTACTGCTGTTCTGAATGCT+TGG | - | chr5.1:19866822-19866841 | MS.gene97738:CDS | 40.0% |
| !!! | GTGTTTTAGTCAATGTGCTG+TGG | - | chr5.1:19864992-19865011 | MS.gene97738:intron | 40.0% |
| AACTCTGGTGTGTCGTATTC+TGG | - | chr5.1:19864903-19864922 | MS.gene97738:CDS | 45.0% | |
| AAGATACGTGAGATGGCGAT+GGG | - | chr5.1:19865128-19865147 | MS.gene97738:intron | 45.0% | |
| AGAGATCGTGACTCAGCAAA+CGG | + | chr5.1:19866069-19866088 | None:intergenic | 45.0% | |
| AGCATTTGCGCTGAGATTAC+AGG | + | chr5.1:19866103-19866122 | None:intergenic | 45.0% | |
| CAAGCTTTCGACTCAGTTAG+AGG | + | chr5.1:19865424-19865443 | None:intergenic | 45.0% | |
| CAAGTCCATTAGGTAGACAG+TGG | + | chr5.1:19866292-19866311 | None:intergenic | 45.0% | |
| CAGAAGGCAAAAATGAAGCC+AGG | + | chr5.1:19865506-19865525 | None:intergenic | 45.0% | |
| CAGTTAGTAACCGCTTTGGT+TGG | + | chr5.1:19866155-19866174 | None:intergenic | 45.0% | |
| CATTTGCGCTGAGATTACAG+GGG | + | chr5.1:19866101-19866120 | None:intergenic | 45.0% | |
| CCTTGATTCTTACCAGAGCT+AGG | - | chr5.1:19865809-19865828 | MS.gene97738:intron | 45.0% | |
| CGACGCAATCTCTTCTTACA+AGG | - | chr5.1:19864366-19864385 | MS.gene97738:CDS | 45.0% | |
| CTGAATGCTTGGTATTCAGC+TGG | - | chr5.1:19866833-19866852 | MS.gene97738:CDS | 45.0% | |
| GAACTAAAATCCAACGCTCC+TGG | - | chr5.1:19865485-19865504 | MS.gene97738:intron | 45.0% | |
| GCATTTGCGCTGAGATTACA+GGG | + | chr5.1:19866102-19866121 | None:intergenic | 45.0% | |
| GGAGAACGATAGAGTGGAAA+TGG | + | chr5.1:19866191-19866210 | None:intergenic | 45.0% | |
| TAAGAGGGAGAACGATAGAG+TGG | + | chr5.1:19866197-19866216 | None:intergenic | 45.0% | |
| TAAGATACGTGAGATGGCGA+TGG | - | chr5.1:19865127-19865146 | MS.gene97738:intron | 45.0% | |
| TACCAGAGCTAGGATCCTTT+AGG | - | chr5.1:19865819-19865838 | MS.gene97738:intron | 45.0% | |
| TTCCTAAAGGATCCTAGCTC+TGG | + | chr5.1:19865824-19865843 | None:intergenic | 45.0% | |
| TTCGCAGTTAGTAACCGCTT+TGG | + | chr5.1:19866159-19866178 | None:intergenic | 45.0% | |
| ! | AAAAATGAAGCCAGGAGCGT+TGG | + | chr5.1:19865498-19865517 | None:intergenic | 45.0% |
| ! | AATTTAGGGTGAGGTTGAGC+GGG | + | chr5.1:19865899-19865918 | None:intergenic | 45.0% |
| ! | ACAAATTGGTGGCTCAGAGA+CGG | - | chr5.1:19866796-19866815 | MS.gene97738:CDS | 45.0% |
| ! | ACACACCTTTTGTCCTTCAG+TGG | - | chr5.1:19866644-19866663 | MS.gene97738:CDS | 45.0% |
| ! | GAATTTAGGGTGAGGTTGAG+CGG | + | chr5.1:19865900-19865919 | None:intergenic | 45.0% |
| ! | TATTCAGCTGGCTTCCATAC+CGG | - | chr5.1:19866845-19866864 | MS.gene97738:CDS | 45.0% |
| ! | TTGTGCACTGATAGATCTGC+TGG | - | chr5.1:19865578-19865597 | MS.gene97738:intron | 45.0% |
| !! | CCTAGCTCTGGTAAGAATCA+AGG | + | chr5.1:19865812-19865831 | None:intergenic | 45.0% |
| !!! | AATTTATTTTGATTTATAAT+AGG | - | chr5.1:19864631-19864650 | MS.gene97738:intron | 5.0% |
| !!! | ATTTATTTTGATTTATAATA+GGG | - | chr5.1:19864632-19864651 | MS.gene97738:intron | 5.0% |
| ACTCAGCTACACCCAAAGTG+TGG | + | chr5.1:19866020-19866039 | None:intergenic | 50.0% | |
| AGATACGTGAGATGGCGATG+GGG | - | chr5.1:19865129-19865148 | MS.gene97738:intron | 50.0% | |
| AGGGAGCAGTAGCTTCCTAA+AGG | + | chr5.1:19865837-19865856 | None:intergenic | 50.0% | |
| CGTATCTTACCATCTCCACC+AGG | + | chr5.1:19865116-19865135 | None:intergenic | 50.0% | |
| CTCAGCAAACGGTCCTAATG+AGG | + | chr5.1:19866058-19866077 | None:intergenic | 50.0% | |
| CTCTCTCTACCCAACCAAAG+CGG | - | chr5.1:19866142-19866161 | MS.gene97738:intron | 50.0% | |
| TCAATTCCGGGTTGCTCTGT+TGG | - | chr5.1:19865026-19865045 | MS.gene97738:intron | 50.0% | |
| TGTAGCACCAGTTGTGTGTG+AGG | + | chr5.1:19865952-19865971 | None:intergenic | 50.0% | |
| ! | ATTCAGCTGGCTTCCATACC+GGG | - | chr5.1:19866846-19866865 | MS.gene97738:CDS | 50.0% |
| !! | GTGTTGATTCCTGGTGGAGA+TGG | - | chr5.1:19865104-19865123 | MS.gene97738:intron | 50.0% |
| ATTCCGGGTTGCTCTGTTGG+TGG | - | chr5.1:19865029-19865048 | MS.gene97738:intron | 55.0% | |
| GATACGTGAGATGGCGATGG+GGG | - | chr5.1:19865130-19865149 | MS.gene97738:intron | 55.0% | |
| TTCCGGGTTGCTCTGTTGGT+GGG | - | chr5.1:19865030-19865049 | MS.gene97738:intron | 55.0% | |
| ! | GCAGCAACTGGGTTGAACTC+TGG | - | chr5.1:19864888-19864907 | MS.gene97738:CDS | 55.0% |
| GACCCACCAACAGAGCAACC+CGG | + | chr5.1:19865035-19865054 | None:intergenic | 60.0% | |
| ! | GGGTTGCTCTGTTGGTGGGT+CGG | - | chr5.1:19865034-19865053 | MS.gene97738:intron | 60.0% |
| ! | GGTTGCTCTGTTGGTGGGTC+GGG | - | chr5.1:19865035-19865054 | MS.gene97738:intron | 60.0% |
| ! | TCTGTTGGTGGGTCGGGTGT+CGG | - | chr5.1:19865041-19865060 | MS.gene97738:intron | 60.0% |
| TGAGATGGCGATGGGGGCAG+CGG | - | chr5.1:19865136-19865155 | MS.gene97738:intron | 65.0% | |
| GGCGATGGGGGCAGCGGAGA+GGG | - | chr5.1:19865142-19865161 | MS.gene97738:intron | 75.0% | |
| TGGCGATGGGGGCAGCGGAG+AGG | - | chr5.1:19865141-19865160 | MS.gene97738:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 19864313 | 19867382 | 19864313 | ID=MS.gene97738 |
| chr5.1 | mRNA | 19864313 | 19867382 | 19864313 | ID=MS.gene97738.t1;Parent=MS.gene97738 |
| chr5.1 | exon | 19867308 | 19867382 | 19867308 | ID=MS.gene97738.t1.exon1;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19867308 | 19867382 | 19867308 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| chr5.1 | exon | 19867130 | 19867209 | 19867130 | ID=MS.gene97738.t1.exon2;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19867130 | 19867209 | 19867130 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| chr5.1 | exon | 19866480 | 19867042 | 19866480 | ID=MS.gene97738.t1.exon3;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19866480 | 19867042 | 19866480 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| chr5.1 | exon | 19864825 | 19864927 | 19864825 | ID=MS.gene97738.t1.exon4;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19864825 | 19864927 | 19864825 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| chr5.1 | exon | 19864503 | 19864555 | 19864503 | ID=MS.gene97738.t1.exon5;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19864503 | 19864555 | 19864503 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| chr5.1 | exon | 19864313 | 19864419 | 19864313 | ID=MS.gene97738.t1.exon6;Parent=MS.gene97738.t1 |
| chr5.1 | CDS | 19864313 | 19864419 | 19864313 | ID=cds.MS.gene97738.t1;Parent=MS.gene97738.t1 |
| Gene Sequence |
| Protein sequence |
