AlfalfaGEDB | MS.gene07368

M. sativa cultivar XinJiangDaYe / MS.gene07368

KEGG: -
GO: -
PFAM: PF05899.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07368.t1	XP_003591303.1	99.3	143	1	0	1	143	1	143	6.90E-76	293.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07368.t1	G7IBQ3	99.3	143	1	0	1	143	1	143	5.0e-76	293.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene07368	0.849289	3.56E-60	-1.69E-46
MS.gene049378	MS.gene07368	0.800672	1.29E-48	-1.69E-46
MS.gene049758	MS.gene07368	0.829103	6.21E-55	-1.69E-46
MS.gene04987	MS.gene07368	0.824581	7.47E-54	-1.69E-46
MS.gene04988	MS.gene07368	0.803084	4.13E-49	-1.69E-46
MS.gene049915	MS.gene07368	0.80317	3.96E-49	-1.69E-46
MS.gene050226	MS.gene07368	0.822451	2.35E-53	-1.69E-46
MS.gene050227	MS.gene07368	0.838083	3.55E-57	-1.69E-46
MS.gene050228	MS.gene07368	0.829621	4.65E-55	-1.69E-46
MS.gene050277	MS.gene07368	0.837122	6.26E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene07368	MS.gene20912	PPI
MS.gene07368	MS.gene005422	PPI
MS.gene21134	MS.gene07368	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07368.t1	MTR_1g086000	99.301	143	1	1	143	1	143	2.68e-104	294
MS.gene07368.t1	MTR_6g060170	40.260	77	46	42	118	3	79	2.42e-16	69.7
MS.gene07368.t1	MTR_1g076840	32.500	80	54	39	118	34	113	8.78e-13	61.6
MS.gene07368.t1	MTR_6g059920	32.258	93	63	45	137	36	128	2.24e-12	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07368.t1	AT2G32650	67.133	143	42	2	1	142	1	139	4.04e-65	195
MS.gene07368.t1	AT2G32650	67.133	143	42	2	1	142	1	139	4.04e-65	195
MS.gene07368.t1	AT2G32180	67.133	143	42	2	1	142	1	139	5.03e-65	194
MS.gene07368.t1	AT2G32180	67.133	143	42	2	1	142	1	139	5.03e-65	194
MS.gene07368.t1	AT4G10290	35.065	77	47	1	45	118	16	92	2.83e-11	57.4
MS.gene07368.t1	AT4G10300	29.703	101	69	1	18	118	17	115	3.95e-11	57.4

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Find 39 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATAACGTTCTTGATA+CGG	0.530071	1.2:+64687705	None:intergenic
AAGTGAGAGTTGTTCCTGAA+GGG	0.600643	1.2:-64687809	MS.gene07368:CDS
AATAATCATCACCATATGCT+CGG	0.568249	1.2:+64687682	None:intergenic
AATCCAGGTTGCCATGGGAT+TGG	0.488234	1.2:-64687866	MS.gene07368:CDS
AATGAAGATAGAGAAATCCT+TGG	0.554986	1.2:-64687982	MS.gene07368:CDS
ACCATTGTTGATAGGAGAAT+AGG	0.477458	1.2:+64688061	None:intergenic
ACCTATTCTCCTATCAACAA+TGG	0.597081	1.2:-64688062	MS.gene07368:CDS
AGATCAGCCTCAAACCACTT+CGG	0.631094	1.2:+64687741	None:intergenic
AGATGGTCAGTATGGAAGAC+CGG	0.563715	1.2:-64687891	MS.gene07368:CDS
AGTGGTTTGAGGCTGATCTT+TGG	0.382114	1.2:-64687737	MS.gene07368:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAATCATCACCATATGCT+CGG	+	chr1.2:64688090-64688109	None:intergenic	30.0%
AATGAAGATAGAGAAATCCT+TGG	-	chr1.2:64687787-64687806	MS.gene07368:CDS	30.0%
CACATTGTATAATTCTTCCA+AGG	+	chr1.2:64687807-64687826	None:intergenic	30.0%
GGAAGAATTATACAATGTGA+AGG	-	chr1.2:64687808-64687827	MS.gene07368:CDS	30.0%
ACCTATTCTCCTATCAACAA+TGG	-	chr1.2:64687707-64687726	MS.gene07368:CDS	35.0%
ATGTTTCAAGATGGTCAGTA+TGG	-	chr1.2:64687870-64687889	MS.gene07368:CDS	35.0%
CAATGTGAAGGTAGAAAGAA+AGG	-	chr1.2:64687820-64687839	MS.gene07368:CDS	35.0%
AAGTGAGAGTTGTTCCTGAA+GGG	-	chr1.2:64687960-64687979	MS.gene07368:CDS	40.0%
ATTTAATCCGGTATCCGAAG+TGG	-	chr1.2:64688014-64688033	MS.gene07368:CDS	40.0%
CAACTGGTGTACATAGAAGA+AGG	-	chr1.2:64687935-64687954	MS.gene07368:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	64687680	64688111	64687680	ID=MS.gene07368
chr1.2	mRNA	64687680	64688111	64687680	ID=MS.gene07368.t1;Parent=MS.gene07368
chr1.2	exon	64687680	64688111	64687680	ID=MS.gene07368.t1.exon1;Parent=MS.gene07368.t1
chr1.2	CDS	64687680	64688111	64687680	ID=cds.MS.gene07368.t1;Parent=MS.gene07368.t1

Gene Sequence

>MS.gene07368

ATGGCAAGCTTGTTGACATCAACCTTCACCTATTCTCCTATCAACAATGGTTCAAGGAGTTTGAGAAAATCAAGTAACTCTTCTATGCGAGGGTGTTGCGTAAAAGCAATGAAGATAGAGAAATCCTTGGAAGAATTATACAATGTGAAGGTAGAAAGAAAGGTGTCACCTGAAAAACTAGCTCAGCTTGATGTTTCAAGATGGTCAGTATGGAAGACCGGAAAATCCAGGTTGCCATGGGATTGGCAGGTAGACCAACTGGTGTACATAGAAGAAGGTGAAGTGAGAGTTGTTCCTGAAGGGAGCAAGCGTTTCATGCAATTTGTTGCCGGAGATTTAATCCGGTATCCGAAGTGGTTTGAGGCTGATCTTTGGTTCAATGGTCCGTATCAAGAACGTTATAGTTTCCGAGCATATGGTGATGATTATTGA

Protein sequence

>MS.gene07368.t1

MASLLTSTFTYSPINNGSRSLRKSSNSSMRGCCVKAMKIEKSLEELYNVKVERKVSPEKLAQLDVSRWSVWKTGKSRLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQFVAGDLIRYPKWFEADLWFNGPYQERYSFRAYGDDY