AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91807


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91807.t1 MTR_8g005295 92.816 515 34 1 1 515 1 512 0.0 984
MS.gene91807.t1 MTR_8g005285 88.178 516 44 1 1 516 1 499 0.0 932
MS.gene91807.t1 MTR_8g005325 49.513 513 189 9 8 515 27 474 2.58e-161 467
MS.gene91807.t1 MTR_8g005235 49.603 504 179 11 19 515 9 444 2.08e-158 458
MS.gene91807.t1 MTR_0209s0060 46.263 495 181 13 19 508 11 425 4.14e-134 395
MS.gene91807.t1 MTR_0209s0030 46.263 495 181 13 19 508 11 425 4.14e-134 395
MS.gene91807.t1 MTR_8g006525 46.245 506 188 13 12 512 4 430 1.44e-132 392
MS.gene91807.t1 MTR_8g005265 45.749 494 189 15 36 515 27 455 4.24e-128 381
MS.gene91807.t1 MTR_8g005225 42.722 529 225 14 1 518 1 462 3.98e-123 369
MS.gene91807.t1 MTR_3g079390 33.468 496 247 16 17 503 20 441 2.14e-64 216
MS.gene91807.t1 MTR_6g010920 31.557 488 220 17 32 508 21 405 1.09e-61 208
MS.gene91807.t1 MTR_6g009590 30.346 491 226 16 22 497 7 396 5.97e-60 204
MS.gene91807.t1 MTR_6g011050 30.297 472 218 14 36 497 24 394 5.51e-58 198
MS.gene91807.t1 MTR_4g112660 38.824 340 118 9 188 510 90 356 2.57e-57 195
MS.gene91807.t1 MTR_4g112660 46.429 84 41 3 36 118 6 86 6.69e-15 76.6
MS.gene91807.t1 MTR_6g009610 30.947 475 226 14 29 497 18 396 8.83e-57 195
MS.gene91807.t1 MTR_6g011060 29.555 494 236 15 25 503 14 410 5.26e-56 193
MS.gene91807.t1 MTR_0024s0080 30.538 465 218 14 38 497 27 391 3.28e-52 183
MS.gene91807.t1 MTR_6g010890 29.492 512 240 19 19 508 10 422 1.39e-51 181
MS.gene91807.t1 MTR_3g107590 30.526 475 225 14 34 496 24 405 2.27e-51 181
MS.gene91807.t1 MTR_6g010810 29.424 486 229 16 35 508 21 404 4.62e-49 174
MS.gene91807.t1 MTR_6g009170 29.577 497 230 17 22 496 7 405 2.24e-48 173
MS.gene91807.t1 MTR_2g036320 27.349 479 263 14 38 514 69 464 9.99e-44 162
MS.gene91807.t1 MTR_2g041180 27.331 472 261 13 36 505 50 441 4.04e-42 157
MS.gene91807.t1 MTR_2g035640 27.189 434 219 9 73 503 1 340 4.60e-38 143
MS.gene91807.t1 MTR_5g086340 25.684 475 272 10 37 508 33 429 3.55e-34 134
MS.gene91807.t1 MTR_5g016570 27.311 476 258 14 32 488 97 503 2.87e-32 130
MS.gene91807.t1 MTR_6g010850 28.889 405 181 14 109 503 33 340 7.31e-32 126
MS.gene91807.t1 MTR_7g011980 34.211 190 101 3 316 503 166 333 1.76e-25 107
MS.gene91807.t1 MTR_7g011980 31.579 171 66 4 29 199 18 137 6.02e-17 82.8
MS.gene91807.t1 MTR_7g060310 24.540 489 290 15 46 503 39 479 1.83e-23 103
MS.gene91807.t1 MTR_7g059540 22.397 509 273 15 38 503 29 458 2.25e-22 100
MS.gene91807.t1 MTR_6g009580 30.841 214 119 4 289 496 29 219 1.26e-21 94.4
MS.gene91807.t1 MTR_7g059540 22.287 516 275 16 38 503 28 467 2.24e-21 97.4
MS.gene91807.t1 MTR_7g060260 22.532 466 256 12 38 488 28 403 3.31e-19 90.5
MS.gene91807.t1 MTR_7g060115 22.822 482 269 15 53 505 44 451 2.79e-18 87.8
MS.gene91807.t1 MTR_7g060320 22.774 483 272 16 38 488 28 441 4.17e-18 87.4
MS.gene91807.t1 MTR_5g086230 30.939 181 103 4 37 213 29 191 8.04e-18 82.4
MS.gene91807.t1 MTR_0182s0060 24.852 507 303 17 40 503 37 508 5.66e-17 84.3
MS.gene91807.t1 MTR_7g059525 28.877 187 113 2 318 503 108 275 6.02e-17 81.6
MS.gene91807.t1 MTR_7g059520 30.409 171 99 3 318 487 5 156 1.37e-16 78.2
MS.gene91807.t1 MTR_6g009600 32.593 135 67 2 318 451 23 134 1.53e-16 77.4
MS.gene91807.t1 MTR_7g060080 32.432 148 95 2 363 505 42 189 1.75e-16 78.6
MS.gene91807.t1 MTR_5g087580 25.980 204 126 3 316 518 41 220 2.97e-16 78.2
MS.gene91807.t1 MTR_5g086260 28.079 203 120 4 318 518 136 314 4.20e-16 79.7
MS.gene91807.t1 MTR_7g446270 23.780 492 273 20 38 488 31 461 7.00e-16 80.5
MS.gene91807.t1 MTR_7g060220 23.191 470 259 14 38 488 27 413 1.16e-15 79.7
MS.gene91807.t1 MTR_7g059480 32.394 142 95 1 363 503 624 765 6.01e-15 78.2
MS.gene91807.t1 MTR_4g009340 31.176 170 104 4 36 205 42 198 6.25e-15 77.8
MS.gene91807.t1 MTR_4g009340 27.841 176 103 4 315 489 376 528 7.64e-11 65.1
MS.gene91807.t1 MTR_7g060840 31.333 150 92 3 367 515 287 426 7.54e-15 77.0
MS.gene91807.t1 MTR_7g060020 33.803 142 90 3 367 505 291 431 9.51e-15 76.6
MS.gene91807.t1 MTR_4g009620 32.727 165 97 4 36 200 42 192 8.08e-14 74.3
MS.gene91807.t1 MTR_4g009590 27.895 190 124 4 36 225 42 218 1.06e-13 73.9
MS.gene91807.t1 MTR_4g009590 29.104 134 94 1 373 505 411 544 9.20e-12 67.8
MS.gene91807.t1 MTR_8g042170 31.788 151 89 2 367 503 299 449 2.32e-13 72.8
MS.gene91807.t1 MTR_7g060160 33.333 147 84 5 367 505 263 403 4.08e-13 71.6
MS.gene91807.t1 MTR_2g036310 29.927 137 93 2 371 505 16 151 1.38e-12 66.2
MS.gene91807.t1 MTR_7g017620 28.788 198 126 6 4 200 9 192 1.57e-12 70.5
MS.gene91807.t1 MTR_7g017620 30.075 133 91 2 371 502 399 530 3.87e-11 65.9
MS.gene91807.t1 MTR_8g042830 21.965 346 209 10 184 518 124 419 2.82e-12 68.9
MS.gene91807.t1 MTR_7g059810 24.249 466 248 18 46 488 38 421 7.40e-12 67.8
MS.gene91807.t1 MTR_7g059510 28.369 141 98 2 369 506 282 422 1.52e-11 66.6
MS.gene91807.t1 MTR_3g466740 27.320 194 122 6 37 230 31 205 2.26e-11 66.6
MS.gene91807.t1 MTR_7g067600 27.273 176 114 3 37 209 29 193 6.03e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91807.t1 AT2G44930 30.162 494 239 9 36 508 84 492 5.63e-56 196
MS.gene91807.t1 AT3G60470 29.870 539 269 15 38 508 34 531 3.99e-55 194
MS.gene91807.t1 AT2G28580 28.921 491 244 10 36 508 41 444 4.32e-52 184
MS.gene91807.t1 AT2G28580 28.921 491 244 10 36 508 109 512 1.25e-51 184
MS.gene91807.t1 AT2G28580 28.921 491 244 10 36 508 123 526 1.66e-51 184
MS.gene91807.t1 AT2G28580 29.167 480 240 9 36 508 109 495 2.93e-51 183
MS.gene91807.t1 AT2G28580 29.167 480 240 9 36 508 123 509 3.82e-51 183
MS.gene91807.t1 AT4G31980 27.660 470 231 12 36 496 293 662 9.64e-47 173
MS.gene91807.t1 AT5G11290 25.519 482 265 15 24 503 22 411 4.78e-40 150
MS.gene91807.t1 AT1G67150 27.178 482 246 12 35 503 5 394 5.88e-39 147
MS.gene91807.t1 AT1G67150 27.178 482 246 12 35 503 5 394 5.88e-39 147
MS.gene91807.t1 AT2G36430 25.055 455 259 11 36 488 45 419 1.04e-38 147
MS.gene91807.t1 AT3G50150 27.542 472 270 11 38 505 92 495 1.64e-38 147
MS.gene91807.t1 AT1G67150 26.955 486 246 12 35 503 5 398 2.07e-38 145
MS.gene91807.t1 AT3G50170 25.819 519 304 13 2 503 69 523 7.48e-38 146
MS.gene91807.t1 AT3G47250 26.176 489 273 13 27 503 52 464 9.07e-37 142
MS.gene91807.t1 AT3G47250 26.176 489 273 13 27 503 52 464 9.07e-37 142
MS.gene91807.t1 AT3G47250 26.176 489 273 13 27 503 52 464 9.07e-37 142
MS.gene91807.t1 AT3G47210 28.166 458 220 12 25 467 82 445 1.93e-35 138
MS.gene91807.t1 AT3G50140 26.273 491 259 14 38 505 115 525 3.51e-34 135
MS.gene91807.t1 AT3G50120 26.383 470 283 12 38 503 105 515 3.40e-33 133
MS.gene91807.t1 AT2G28580 27.488 422 197 11 36 437 123 455 5.92e-33 131
MS.gene91807.t1 AT3G50130 26.432 454 270 12 38 488 141 533 3.17e-31 127
MS.gene91807.t1 AT3G50180 25.667 487 259 16 32 503 174 572 7.77e-29 120
MS.gene91807.t1 AT3G47200 25.470 479 261 13 25 488 35 432 1.77e-27 115
MS.gene91807.t1 AT3G47200 25.470 479 261 13 25 488 35 432 1.77e-27 115
MS.gene91807.t1 AT5G22540 24.065 428 227 12 36 453 31 370 2.47e-26 112
MS.gene91807.t1 AT3G44710 24.248 499 316 14 36 516 47 501 5.67e-26 111
MS.gene91807.t1 AT3G50190 23.579 475 259 13 38 503 98 477 6.39e-23 102
MS.gene91807.t1 AT5G11290 23.095 433 240 14 73 503 1 342 1.55e-22 99.4
MS.gene91807.t1 AT1G65985 34.054 185 79 4 38 204 16 175 3.88e-20 93.6
MS.gene91807.t1 AT1G65985 37.903 124 76 1 368 490 304 427 1.79e-16 82.4
MS.gene91807.t1 AT1G65985 34.054 185 79 4 38 204 16 175 3.88e-20 93.6
MS.gene91807.t1 AT1G65985 37.903 124 76 1 368 490 304 427 1.79e-16 82.4
MS.gene91807.t1 AT3G50170 29.439 214 121 5 2 205 69 262 7.90e-20 92.4
MS.gene91807.t1 AT5G22550 31.579 209 119 8 2 206 9 197 1.02e-19 92.4
MS.gene91807.t1 AT3G50160 31.285 179 103 4 32 210 100 258 1.88e-18 88.6
MS.gene91807.t1 AT3G50160 27.679 224 133 3 286 503 285 485 9.54e-17 83.6
MS.gene91807.t1 AT1G67150 29.947 187 107 3 318 503 188 351 2.84e-18 87.0
MS.gene91807.t1 AT1G67150 31.694 183 94 5 35 207 5 166 2.89e-15 77.8
MS.gene91807.t1 AT3G50150 31.429 175 99 4 38 210 92 247 1.02e-16 83.2
MS.gene91807.t1 AT3G50140 30.952 168 96 4 38 205 115 262 7.85e-16 80.1
MS.gene91807.t1 AT5G22560 26.882 186 103 4 36 207 47 213 2.47e-15 79.0
MS.gene91807.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.72e-13 70.9
MS.gene91807.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.72e-13 70.9
MS.gene91807.t1 AT3G50190 27.717 184 110 5 38 221 98 258 8.17e-13 70.1
MS.gene91807.t1 AT3G02645 32.203 118 79 1 373 489 380 497 8.81e-13 71.2

Find 59 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8.3:+81506430 MS.gene91807:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8.3:-81506209 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8.3:-81505985 None:intergenic
CTGCTAAACTTAACTCTTCT+AGG 0.268196 8.3:-81505117 None:intergenic
ACCATTTCAAAGCGCGTCTA+AGG 0.318480 8.3:+81506130 MS.gene91807:CDS
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8.3:+81505750 MS.gene91807:CDS
GAAACATAATTGCATATATA+AGG 0.329067 8.3:-81506237 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8.3:-81505320 None:intergenic
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8.3:-81505220 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8.3:-81505898 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8.3:+81505930 MS.gene91807:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8.3:+81505902 MS.gene91807:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8.3:+81505196 MS.gene91807:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8.3:+81505994 MS.gene91807:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8.3:+81505465 MS.gene91807:CDS
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8.3:+81506348 MS.gene91807:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8.3:-81505279 None:intergenic
TCCTTAGACGCGCTTTGAAA+TGG 0.415205 8.3:-81506131 None:intergenic
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8.3:-81505937 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8.3:+81505874 MS.gene91807:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8.3:-81506075 None:intergenic
AATCAACATCAACTTGTGTA+TGG 0.449318 8.3:-81506278 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8.3:+81505069 MS.gene91807:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8.3:-81505882 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8.3:+81506284 MS.gene91807:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8.3:+81506501 MS.gene91807:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8.3:+81506314 MS.gene91807:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8.3:-81505199 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8.3:+81506497 MS.gene91807:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.493716 8.3:+81505805 MS.gene91807:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8.3:-81505228 None:intergenic
TCTAAGGATTCCGCAGTTGA+AGG 0.499213 8.3:+81506146 MS.gene91807:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8.3:+81505551 MS.gene91807:CDS
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8.3:+81506293 MS.gene91807:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8.3:-81506208 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8.3:-81505521 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8.3:+81506315 MS.gene91807:CDS
AGCAGACTGTAGCATCTACA+AGG 0.532357 8.3:+81505135 MS.gene91807:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8.3:+81505946 MS.gene91807:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8.3:-81506460 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8.3:-81506111 None:intergenic
TCAATTGGTCCAATTCACCT+TGG 0.558480 8.3:+81505211 MS.gene91807:CDS
TTAATTGGTGATGTTGGTAG+TGG 0.564871 8.3:+81505811 MS.gene91807:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8.3:-81506455 None:intergenic
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8.3:+81506287 MS.gene91807:CDS
ATGTATCCGATTTCCATGAA+CGG 0.580945 8.3:-81505471 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8.3:+81506368 MS.gene91807:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8.3:+81505866 MS.gene91807:CDS
GACATTGTTCTAGGGCAATG+AGG 0.593451 8.3:-81506200 None:intergenic
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8.3:+81505572 MS.gene91807:CDS
AACTTTGTACGTCTTGCCAG+AGG 0.608544 8.3:+81506552 MS.gene91807:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8.3:+81506458 MS.gene91807:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8.3:-81505933 None:intergenic
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8.3:+81506332 MS.gene91807:CDS
GAATATTTGGAACCGTACCA+TGG 0.643141 8.3:+81506443 MS.gene91807:CDS
TTTCTGGTAGAAGAGACCTC+TGG 0.652209 8.3:-81506568 None:intergenic
GTGTGATCAACCTTCAACTG+CGG 0.710202 8.3:-81506156 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8.3:+81505573 MS.gene91807:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8.3:+81506454 MS.gene91807:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATCAGAATATT+TGG + chr8.3:81506430-81506449 MS.gene91807:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8.3:81506240-81506259 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8.3:81505398-81505417 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8.3:81505787-81505806 MS.gene91807:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8.3:81505397-81505416 None:intergenic 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8.3:81505848-81505867 None:intergenic 20.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8.3:81505901-81505920 None:intergenic 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8.3:81505524-81505543 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8.3:81505988-81506007 None:intergenic 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8.3:81505399-81505418 MS.gene91807:CDS 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8.3:81505994-81506013 MS.gene91807:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8.3:81505069-81505088 MS.gene91807:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8.3:81505414-81505433 MS.gene91807:CDS 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8.3:81505687-81505706 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8.3:81505902-81505921 MS.gene91807:CDS 25.0%
AATCAACATCAACTTGTGTA+TGG - chr8.3:81506281-81506300 None:intergenic 30.0%
AATCTATGAGCAATAACCAT+AGG + chr8.3:81505866-81505885 MS.gene91807:CDS 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8.3:81505196-81505215 MS.gene91807:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8.3:81505625-81505644 None:intergenic 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8.3:81505551-81505570 MS.gene91807:CDS 30.0%
CAATGCAACAACACAAAAAA+AGG + chr8.3:81505251-81505270 MS.gene91807:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8.3:81506078-81506097 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8.3:81506114-81506133 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8.3:81506211-81506230 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8.3:81506175-81506194 MS.gene91807:CDS 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8.3:81505231-81505250 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8.3:81505796-81505815 MS.gene91807:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8.3:81505223-81505242 None:intergenic 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8.3:81505458-81505477 MS.gene91807:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8.3:81505174-81505193 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8.3:81506284-81506303 MS.gene91807:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8.3:81505946-81505965 MS.gene91807:CDS 30.0%
!!! CTTTTTTTGTGTTGTTGCAT+TGG - chr8.3:81505253-81505272 None:intergenic 30.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8.3:81505465-81505484 MS.gene91807:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8.3:81506332-81506351 MS.gene91807:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8.3:81505874-81505893 MS.gene91807:CDS 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8.3:81505282-81505301 None:intergenic 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8.3:81505474-81505493 None:intergenic 35.0%
CTGCTAAACTTAACTCTTCT+AGG - chr8.3:81505120-81505139 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8.3:81506212-81506231 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8.3:81506315-81506334 MS.gene91807:CDS 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8.3:81505323-81505342 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8.3:81505202-81505221 None:intergenic 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8.3:81505940-81505959 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8.3:81506368-81506387 MS.gene91807:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8.3:81505930-81505949 MS.gene91807:CDS 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8.3:81505750-81505769 MS.gene91807:CDS 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8.3:81506287-81506306 MS.gene91807:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8.3:81506081-81506100 MS.gene91807:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8.3:81506478-81506497 MS.gene91807:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8.3:81505811-81505830 MS.gene91807:CDS 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8.3:81505663-81505682 None:intergenic 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8.3:81506018-81506037 MS.gene91807:CDS 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8.3:81505664-81505683 None:intergenic 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8.3:81506019-81506038 MS.gene91807:CDS 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8.3:81506017-81506036 MS.gene91807:CDS 35.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8.3:81505936-81505955 None:intergenic 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8.3:81506314-81506333 MS.gene91807:CDS 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8.3:81505211-81505230 MS.gene91807:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8.3:81505588-81505607 MS.gene91807:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8.3:81506443-81506462 MS.gene91807:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8.3:81505885-81505904 None:intergenic 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8.3:81506501-81506520 MS.gene91807:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8.3:81505805-81505824 MS.gene91807:CDS 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8.3:81506293-81506312 MS.gene91807:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8.3:81505163-81505182 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8.3:81506497-81506516 MS.gene91807:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8.3:81505432-81505451 MS.gene91807:CDS 40.0%
AACTTTGTACGTCTTGCCAG+AGG + chr8.3:81506552-81506571 MS.gene91807:CDS 45.0%
ACCATTTCAAAGCGCGTCTA+AGG + chr8.3:81506130-81506149 MS.gene91807:CDS 45.0%
AGCAGACTGTAGCATCTACA+AGG + chr8.3:81505135-81505154 MS.gene91807:CDS 45.0%
GTGTGATCAACCTTCAACTG+CGG - chr8.3:81506159-81506178 None:intergenic 45.0%
TCTAAGGATTCCGCAGTTGA+AGG + chr8.3:81506146-81506165 MS.gene91807:CDS 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8.3:81506348-81506367 MS.gene91807:CDS 45.0%
! TTTCTGGTAGAAGAGACCTC+TGG - chr8.3:81506571-81506590 None:intergenic 45.0%
!! GACATTGTTCTAGGGCAATG+AGG - chr8.3:81506203-81506222 None:intergenic 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8.3:81505573-81505592 MS.gene91807:CDS 45.0%
!! TCCTTAGACGCGCTTTGAAA+TGG - chr8.3:81506134-81506153 None:intergenic 45.0%
ACCACAATGCAGCCATGGTA+CGG - chr8.3:81506458-81506477 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8.3:81506458-81506477 MS.gene91807:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8.3:81505572-81505591 MS.gene91807:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG + chr8.3:81506454-81506473 MS.gene91807:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8.3:81506463-81506482 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 81505037 81506605 81505037 ID=MS.gene91807
chr8.3 mRNA 81505037 81506605 81505037 ID=MS.gene91807.t1;Parent=MS.gene91807
chr8.3 exon 81505037 81506605 81505037 ID=MS.gene91807.t1.exon1;Parent=MS.gene91807.t1
chr8.3 CDS 81505037 81506605 81505037 ID=cds.MS.gene91807.t1;Parent=MS.gene91807.t1
Gene Sequence

>MS.gene91807

ATGGCACATGCTAATACTTCTGCTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTAGAAGAGTTAAGTTTAGCAGACTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAAAAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACACAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTAGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTAAGGATTCCGCAGTTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTCATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATCCATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATGAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCCAGAGGTCTCTTCTACCAGAAACTTAAAAATGTATAA

Protein sequence

>MS.gene91807.t1

MAHANTSADALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKKRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGSGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYYDIINELNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARGLFYQKLKNV