Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77453.t1 | RHN42406.1 | 97.3 | 335 | 8 | 1 | 11 | 345 | 1 | 334 | 1.80E-191 | 679.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77453.t1 | Q9FI94 | 80.0 | 350 | 69 | 1 | 18 | 366 | 2 | 351 | 4.7e-169 | 596.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77453.t1 | A0A396GMQ6 | 97.3 | 335 | 8 | 1 | 11 | 345 | 1 | 334 | 1.3e-191 | 679.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77453.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene77453 | 0.811384 | 7.19E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene77453 | 0.831311 | 1.79E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene77453 | 0.82669 | 2.36E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene77453 | 0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene77453 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene77453 | 0.834462 | 2.96E-56 | -1.69E-46 |
| MS.gene050137 | MS.gene77453 | 0.801335 | 9.45E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene77453 | 0.826798 | 2.23E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene77453 | 0.815094 | 1.10E-51 | -1.69E-46 |
| MS.gene050478 | MS.gene77453 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene050546 | MS.gene77453 | 0.807268 | 5.49E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene77453 | 0.802015 | 6.86E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene77453 | 0.824368 | 8.38E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene77453 | 0.817082 | 3.97E-52 | -1.69E-46 |
| MS.gene051180 | MS.gene77453 | 0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene77453 | 0.80051 | 1.39E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene77453 | 0.823117 | 1.65E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene77453 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene77453 | 0.833501 | 5.14E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene77453 | 0.803397 | 3.55E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene77453 | 0.809654 | 1.70E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene77453 | 0.825763 | 3.93E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene77453 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene77453 | 0.837465 | 5.11E-57 | -1.69E-46 |
| MS.gene052611 | MS.gene77453 | 0.865413 | 6.01E-65 | -1.69E-46 |
| MS.gene052612 | MS.gene77453 | 0.836656 | 8.23E-57 | -1.69E-46 |
| MS.gene052665 | MS.gene77453 | 0.816517 | 5.31E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene77453 | 0.820006 | 8.61E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene77453 | 0.822332 | 2.51E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene77453 | 0.813498 | 2.48E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene77453 | 0.815152 | 1.07E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene77453 | 0.808067 | 3.72E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene77453 | 0.844662 | 6.58E-59 | -1.69E-46 |
| MS.gene053599 | MS.gene77453 | 0.805907 | 1.06E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene77453 | 0.804441 | 2.16E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene77453 | 0.830235 | 3.29E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene77453 | 0.817761 | 2.79E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene77453 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene77453 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene77453 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene77453 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene77453 | 0.815246 | 1.02E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene77453 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene77453 | 0.820166 | 7.92E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene77453 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene77453 | 0.827336 | 1.66E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene77453 | 0.820103 | 8.19E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene77453 | 0.841171 | 5.59E-58 | -1.69E-46 |
| MS.gene056050 | MS.gene77453 | 0.824854 | 6.44E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene77453 | 0.858258 | 9.32E-63 | -1.69E-46 |
| MS.gene056366 | MS.gene77453 | 0.814182 | 1.76E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene77453 | 0.821349 | 4.23E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene77453 | 0.807158 | 5.79E-50 | -1.69E-46 |
| MS.gene057414 | MS.gene77453 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene77453 | 0.826473 | 2.66E-54 | -1.69E-46 |
| MS.gene057446 | MS.gene77453 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene77453 | 0.822398 | 2.42E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene77453 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene77453 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene77453 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene77453 | 0.837944 | 3.85E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene77453 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene77453 | 0.821061 | 4.93E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene77453 | 0.828996 | 6.59E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene77453 | 0.802191 | 6.31E-49 | -1.69E-46 |
| MS.gene059331 | MS.gene77453 | 0.844179 | 8.87E-59 | -1.69E-46 |
| MS.gene059335 | MS.gene77453 | 0.829463 | 5.08E-55 | -1.69E-46 |
| MS.gene059607 | MS.gene77453 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene77453 | 0.844253 | 8.48E-59 | -1.69E-46 |
| MS.gene059937 | MS.gene77453 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene77453 | 0.820802 | 5.66E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene77453 | 0.806391 | 8.41E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene77453 | 0.826274 | 2.97E-54 | -1.69E-46 |
| MS.gene060907 | MS.gene77453 | 0.800568 | 1.36E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77453.t1 | MTR_3g084750 | 90.736 | 367 | 18 | 3 | 374 | 738 | 59 | 411 | 0.0 | 657 |
| MS.gene77453.t1 | MTR_3g084750 | 90.736 | 367 | 18 | 3 | 374 | 738 | 7 | 359 | 0.0 | 655 |
| MS.gene77453.t1 | MTR_1g015930 | 46.185 | 249 | 130 | 3 | 411 | 659 | 50 | 294 | 2.39e-60 | 207 |
| MS.gene77453.t1 | MTR_1g019050 | 33.203 | 256 | 138 | 8 | 404 | 651 | 43 | 273 | 5.51e-26 | 109 |
| MS.gene77453.t1 | MTR_8g079080 | 78.049 | 41 | 3 | 1 | 241 | 275 | 45 | 85 | 1.59e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77453.t1 | AT5G05920 | 80.000 | 350 | 69 | 1 | 18 | 366 | 2 | 351 | 0.0 | 601 |
| MS.gene77453.t1 | AT5G05920 | 84.211 | 228 | 36 | 0 | 139 | 366 | 6 | 233 | 3.33e-141 | 414 |
| MS.gene77453.t1 | AT4G12240 | 56.977 | 344 | 126 | 5 | 405 | 738 | 30 | 361 | 1.56e-130 | 392 |
| MS.gene77453.t1 | AT5G05920 | 81.595 | 163 | 30 | 0 | 204 | 366 | 1 | 163 | 7.21e-93 | 287 |
| MS.gene77453.t1 | AT5G52010 | 46.400 | 250 | 128 | 4 | 409 | 658 | 71 | 314 | 2.59e-60 | 209 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTATTCTGAGCTTAT+TGG | 0.177466 | 3.4:-79408112 | None:intergenic |
| AGCTGAAACGGGCAGGGTTT+TGG | 0.228799 | 3.4:+79408508 | MS.gene77453:CDS |
| GAATTTGATGGAAGTGATTC+TGG | 0.236275 | 3.4:+79405704 | MS.gene77453:CDS |
| GAATCGAATCGGTAATTTAT+TGG | 0.240496 | 3.4:+79403257 | MS.gene77453:CDS |
| TATGTAGAGTAGGGCTGTTC+TGG | 0.246065 | 3.4:+79408043 | MS.gene77453:CDS |
| AGAATAGCTGCAGCTTCTTT+TGG | 0.246225 | 3.4:+79408123 | MS.gene77453:CDS |
| TGTCTCAAGACTGTTGTTAT+TGG | 0.251511 | 3.4:+79408681 | MS.gene77453:CDS |
| CCACAATCAGACCAGGGTTT+TGG | 0.262442 | 3.4:-79405428 | None:intergenic |
| TTGGCAATACAACAGATATA+AGG | 0.272646 | 3.4:+79405537 | MS.gene77453:intron |
| ATGAAAACTCCTACCTTTAC+TGG | 0.273857 | 3.4:+79405092 | MS.gene77453:CDS |
| ACTTCTAATCTTATCTCTTC+TGG | 0.277640 | 3.4:+79402276 | MS.gene77453:CDS |
| GTCTCAAGACTGTTGTTATT+GGG | 0.278322 | 3.4:+79408682 | MS.gene77453:CDS |
| AATTTGCAATAGTTGTCATT+AGG | 0.299937 | 3.4:-79403282 | None:intergenic |
| AGGGAGTAGAAAGGTGAAAT+TGG | 0.313386 | 3.4:+79408398 | MS.gene77453:CDS |
| TGAGACGACACTGTCATTCT+TGG | 0.314624 | 3.4:+79407980 | MS.gene77453:CDS |
| ATGTACAGCTTCACCATTCA+TGG | 0.318700 | 3.4:-79405561 | None:intergenic |
| GAGACGACACTGTCATTCTT+GGG | 0.319372 | 3.4:+79407981 | MS.gene77453:CDS |
| GGGTAAGTATGCTATGAAAA+TGG | 0.326589 | 3.4:+79408422 | MS.gene77453:CDS |
| ATTTGCAATAGTTGTCATTA+GGG | 0.327811 | 3.4:-79403281 | None:intergenic |
| TTCATAAGGTGGGATTGAAT+TGG | 0.333130 | 3.4:-79408085 | None:intergenic |
| TTGGGGTCACGGAAGGATTT+CGG | 0.339709 | 3.4:+79407999 | MS.gene77453:CDS |
| CATTTGATTAACGACTTTAA+CGG | 0.349642 | 3.4:-79402055 | None:intergenic |
| TCATAGGCGGGTTGAGTGTT+TGG | 0.351038 | 3.4:+79408602 | MS.gene77453:CDS |
| GTTAATCCTGGACAATAAAC+TGG | 0.352135 | 3.4:-79405366 | None:intergenic |
| TGAAATCATAACCCTCGATT+TGG | 0.358260 | 3.4:-79401957 | None:intergenic |
| TGCCTTGCGCCAACATATAA+AGG | 0.358724 | 3.4:+79403192 | MS.gene77453:CDS |
| AATACTGCACAAGAATTTGA+TGG | 0.361085 | 3.4:+79405692 | MS.gene77453:CDS |
| AGCTTATTGGCAACTTCATA+AGG | 0.365446 | 3.4:-79408099 | None:intergenic |
| ACAGGAACTGTTGTATCGTT+TGG | 0.373770 | 3.4:+79408227 | MS.gene77453:CDS |
| CTGTATCGGTTGTGGAAAAC+TGG | 0.377175 | 3.4:+79408793 | MS.gene77453:CDS |
| GTTGTATCGTTTGGAGGATA+AGG | 0.381598 | 3.4:+79408236 | MS.gene77453:CDS |
| CCCCATGAAACAGCCTCATC+TGG | 0.390821 | 3.4:-79405734 | None:intergenic |
| CTCATGTTTGTCGTGTTTGT+GGG | 0.391232 | 3.4:+79408280 | MS.gene77453:CDS |
| TGCACCATTGCGCATCATAT+TGG | 0.397312 | 3.4:-79405651 | None:intergenic |
| GGGTTCAAACTGTGTTAGAT+AGG | 0.398462 | 3.4:+79408529 | MS.gene77453:CDS |
| AGGATTAACTGATGGCTCAT+TGG | 0.401238 | 3.4:+79405380 | MS.gene77453:CDS |
| CTCAAATCAATGCTCACAAC+TGG | 0.413436 | 3.4:+79402006 | MS.gene77453:CDS |
| CCTCATGTTTGTCGTGTTTG+TGG | 0.413883 | 3.4:+79408279 | MS.gene77453:CDS |
| AAAGGAGATTTCTCTTTGCC+TGG | 0.415853 | 3.4:+79403210 | MS.gene77453:CDS |
| TGACAACTATTGCAAATTTG+AGG | 0.416421 | 3.4:+79403287 | MS.gene77453:CDS |
| GCCAAACCATACCCAACTTT+AGG | 0.418960 | 3.4:-79408480 | None:intergenic |
| TGGCAATACAACAGATATAA+GGG | 0.421254 | 3.4:+79405538 | MS.gene77453:intron |
| TCCTAAAGTTGGGTATGGTT+TGG | 0.425982 | 3.4:+79408479 | MS.gene77453:CDS |
| TCATCACAATCCTCATCAAT+AGG | 0.426415 | 3.4:-79402195 | None:intergenic |
| GCGTTGCAAATGTGATGTTT+TGG | 0.427804 | 3.4:-79405629 | None:intergenic |
| TTGACTCCTAAAGTTGGGTA+TGG | 0.429889 | 3.4:+79408474 | MS.gene77453:CDS |
| GGATTAACTGATGGCTCATT+GGG | 0.432714 | 3.4:+79405381 | MS.gene77453:CDS |
| CGTTAAAGTCGTTAATCAAA+TGG | 0.440345 | 3.4:+79402056 | MS.gene77453:CDS |
| ATAAGAAGGATTTGGTGTAT+AGG | 0.440396 | 3.4:+79402220 | MS.gene77453:CDS |
| TCATAAGGTGGGATTGAATT+GGG | 0.443856 | 3.4:-79408084 | None:intergenic |
| AATATTCCAGTTTATTGTCC+AGG | 0.444941 | 3.4:+79405360 | MS.gene77453:CDS |
| CATGTAGTTGTTACAACTAC+AGG | 0.448520 | 3.4:+79403144 | MS.gene77453:CDS |
| AGGATCTGCTAAAACTGTTA+AGG | 0.452905 | 3.4:+79405765 | MS.gene77453:CDS |
| TTTGATGGGGAAGGCGAAGA+AGG | 0.453176 | 3.4:+79408767 | MS.gene77453:CDS |
| ATCCAAGTTAATAGCTCGAT+TGG | 0.455505 | 3.4:+79405054 | MS.gene77453:CDS |
| TGATGAAGATAAGAAGGATT+TGG | 0.455823 | 3.4:+79402212 | MS.gene77453:CDS |
| GGGTTGCGTTGAAGCTAGAT+TGG | 0.456974 | 3.4:+79402157 | MS.gene77453:intron |
| GATGCAGTTCCTAAAACATC+TGG | 0.457052 | 3.4:+79408891 | MS.gene77453:CDS |
| AAATTAGACTCCGATGATAA+TGG | 0.457209 | 3.4:+79408984 | MS.gene77453:CDS |
| CTACCTTTACTGGGCATACA+AGG | 0.457425 | 3.4:+79405102 | MS.gene77453:CDS |
| GTCCAGATGAGGCTGTTTCA+TGG | 0.457838 | 3.4:+79405732 | MS.gene77453:CDS |
| TTGTATCGTTTGGAGGATAA+GGG | 0.462961 | 3.4:+79408237 | MS.gene77453:CDS |
| GCTGATGAGCTGAAACGGGC+AGG | 0.464292 | 3.4:+79408501 | MS.gene77453:CDS |
| TCAAATGTTGAAGGAGCAAA+AGG | 0.465723 | 3.4:+79403332 | MS.gene77453:CDS |
| TTTAACGGCATCACCAAAGT+TGG | 0.472768 | 3.4:-79402040 | None:intergenic |
| TGGTGGATATGATGGATCAT+AGG | 0.472905 | 3.4:+79408586 | MS.gene77453:CDS |
| TCCAGATGAGGCTGTTTCAT+GGG | 0.474222 | 3.4:+79405733 | MS.gene77453:CDS |
| TCGTGATATATTGAAAAGAT+TGG | 0.474466 | 3.4:+79408821 | MS.gene77453:CDS |
| ATTGCTAAAAGTGTGGCTAT+TGG | 0.475645 | 3.4:-79408172 | None:intergenic |
| GGAGCTTATCTTCGCTCAAA+AGG | 0.483770 | 3.4:+79403231 | MS.gene77453:CDS |
| TCCCAATCGAGCTATTAACT+TGG | 0.489104 | 3.4:-79405056 | None:intergenic |
| TGAGTGTTTGGTTCTTGTAT+CGG | 0.489683 | 3.4:+79408614 | MS.gene77453:CDS |
| GAGAAATCTCCTTTATATGT+TGG | 0.490219 | 3.4:-79403201 | None:intergenic |
| TCTCAAGACTGTTGTTATTG+GGG | 0.494985 | 3.4:+79408683 | MS.gene77453:CDS |
| ACTATTGCAAATTTGAGGAC+TGG | 0.495960 | 3.4:+79403292 | MS.gene77453:CDS |
| TATTGCATTGCAAAAGCATA+TGG | 0.499781 | 3.4:+79408566 | MS.gene77453:CDS |
| ATAATCATGCCTGTCTTGCT+AGG | 0.505038 | 3.4:-79405590 | None:intergenic |
| CACTGTCATTCTTGGGGTCA+CGG | 0.505218 | 3.4:+79407988 | MS.gene77453:CDS |
| ACTCTACATAGCTTCTCATT+CGG | 0.506498 | 3.4:-79408030 | None:intergenic |
| GTTGAAGGAGCAAAAGGAAG+AGG | 0.511154 | 3.4:+79403338 | MS.gene77453:CDS |
| GAAGGAGGCTGTATCGGTTG+TGG | 0.514904 | 3.4:+79408785 | MS.gene77453:CDS |
| CATGCAAGTCCTAGCAAGAC+AGG | 0.515398 | 3.4:+79405581 | MS.gene77453:CDS |
| GCAGTGATGGAGTCTTGAAA+AGG | 0.516098 | 3.4:+79408712 | MS.gene77453:CDS |
| TCCAAGTTAATAGCTCGATT+GGG | 0.518058 | 3.4:+79405055 | MS.gene77453:CDS |
| ATGTAGAGTAGGGCTGTTCT+GGG | 0.518539 | 3.4:+79408044 | MS.gene77453:CDS |
| GTTTGGCTGATGAGCTGAAA+CGG | 0.521781 | 3.4:+79408496 | MS.gene77453:CDS |
| GGCGAAGAAGGAGGCTGTAT+CGG | 0.522314 | 3.4:+79408779 | MS.gene77453:CDS |
| AAAGCATATGGTGGATATGA+TGG | 0.523680 | 3.4:+79408578 | MS.gene77453:CDS |
| GTCATTCTTGGGGTCACGGA+AGG | 0.525218 | 3.4:+79407992 | MS.gene77453:CDS |
| CCAAAACCCTGGTCTGATTG+TGG | 0.527845 | 3.4:+79405428 | MS.gene77453:CDS |
| TCAAAAGGATTGAATCGAAT+CGG | 0.532537 | 3.4:+79403246 | MS.gene77453:CDS |
| GGAACTGTTGTATCGTTTGG+AGG | 0.537669 | 3.4:+79408230 | MS.gene77453:CDS |
| AATCGAGCTATTAACTTGGA+TGG | 0.538542 | 3.4:-79405052 | None:intergenic |
| GAAAATGGAAAAGTATAAGA+AGG | 0.542297 | 3.4:+79408437 | MS.gene77453:CDS |
| AATGAGCCATCAGTTAATCC+TGG | 0.542845 | 3.4:-79405378 | None:intergenic |
| TCGTGAGAGGAGGAAAGAAC+AGG | 0.542932 | 3.4:+79408209 | MS.gene77453:CDS |
| TTCCATTCCTTCCAAAACCC+TGG | 0.545098 | 3.4:+79405417 | MS.gene77453:CDS |
| CTCCTCTCACGAACAACGTG+GGG | 0.546733 | 3.4:-79408198 | None:intergenic |
| CTCCTTTATATGTTGGCGCA+AGG | 0.549124 | 3.4:-79403194 | None:intergenic |
| AATGAGAAGCTATGTAGAGT+AGG | 0.549536 | 3.4:+79408033 | MS.gene77453:CDS |
| GGATTGTGATGAAGATAAGA+AGG | 0.551599 | 3.4:+79402206 | MS.gene77453:CDS |
| AAGGCGGAATCAGATAGAAT+CGG | 0.553848 | 3.4:+79408371 | MS.gene77453:CDS |
| TATTGGCAACTTCATAAGGT+GGG | 0.553988 | 3.4:-79408095 | None:intergenic |
| CTATTGTGTAGAATATTCTA+CGG | 0.555084 | 3.4:-79407927 | None:intergenic |
| TTTGGCTGATGAGCTGAAAC+GGG | 0.555204 | 3.4:+79408497 | MS.gene77453:CDS |
| ACAAGGATGACAGAGGTCCT+TGG | 0.556458 | 3.4:+79408958 | MS.gene77453:CDS |
| TATTGTCCAGGATTAACTGA+TGG | 0.556513 | 3.4:+79405372 | MS.gene77453:CDS |
| TTGCCTTGTATGCCCAGTAA+AGG | 0.557308 | 3.4:-79405105 | None:intergenic |
| AAAGAATCTGAAAACCTCGC+AGG | 0.559309 | 3.4:+79401925 | MS.gene77453:CDS |
| TGGAGTTGTTCGACATATGG+TGG | 0.559762 | 3.4:+79408143 | MS.gene77453:CDS |
| ATGAGAAGCTATGTAGAGTA+GGG | 0.561703 | 3.4:+79408034 | MS.gene77453:CDS |
| TTTGAGCGAAGATAAGCTCC+AGG | 0.562914 | 3.4:-79403228 | None:intergenic |
| CTGATGAGCTGAAACGGGCA+GGG | 0.566688 | 3.4:+79408502 | MS.gene77453:CDS |
| ATCGGCTAGAGGGAGTAGAA+AGG | 0.569230 | 3.4:+79408389 | MS.gene77453:CDS |
| TTGCGTTGAAGCTAGATTGG+AGG | 0.571247 | 3.4:+79402160 | MS.gene77453:intron |
| GGATATGATGGATCATAGGC+GGG | 0.572337 | 3.4:+79408590 | MS.gene77453:CDS |
| GAGTAGAAAGGTGAAATTGG+TGG | 0.573655 | 3.4:+79408401 | MS.gene77453:CDS |
| ATCAGATAGAATCGGCTAGA+GGG | 0.575206 | 3.4:+79408379 | MS.gene77453:CDS |
| TTCAGATTCTTTGAAGACTG+TGG | 0.575222 | 3.4:-79401914 | None:intergenic |
| ATTTGCAACACCATTATCAT+CGG | 0.578456 | 3.4:-79408994 | None:intergenic |
| ATGAGCGTGAGCATGCGAAA+AGG | 0.580807 | 3.4:+79408352 | MS.gene77453:CDS |
| ACAGATATAAGGGCCATGAA+TGG | 0.581048 | 3.4:+79405548 | MS.gene77453:intron |
| CTTGTATGCCCAGTAAAGGT+AGG | 0.581698 | 3.4:-79405101 | None:intergenic |
| TGAAAACTCCTACCTTTACT+GGG | 0.585821 | 3.4:+79405093 | MS.gene77453:CDS |
| TTCTGGAGCTCGTCCAGATG+AGG | 0.586670 | 3.4:+79405721 | MS.gene77453:CDS |
| TAAGGTGGGATTGAATTGGG+TGG | 0.598304 | 3.4:-79408081 | None:intergenic |
| TCCTCCTCTCACGAACAACG+TGG | 0.601028 | 3.4:-79408200 | None:intergenic |
| TTACCTTTGTCAGCATCACA+TGG | 0.601287 | 3.4:+79402317 | MS.gene77453:CDS |
| AACAAATGTTTGAATGCCAG+TGG | 0.602266 | 3.4:-79407953 | None:intergenic |
| AGAATGACAGTGTCGTCTCA+AGG | 0.604787 | 3.4:-79407977 | None:intergenic |
| CCCACGTTGTTCGTGAGAGG+AGG | 0.604916 | 3.4:+79408199 | MS.gene77453:CDS |
| AATGCAATATCCGCAGCTTG+CGG | 0.606975 | 3.4:-79408552 | None:intergenic |
| AGACGACACTGTCATTCTTG+GGG | 0.607766 | 3.4:+79407982 | MS.gene77453:CDS |
| AGTAGAAAGGTGAAATTGGT+GGG | 0.609374 | 3.4:+79408402 | MS.gene77453:CDS |
| TGCATTGCAAAAGCATATGG+TGG | 0.610349 | 3.4:+79408569 | MS.gene77453:CDS |
| TTCTACACAATAGAAGCCAC+TGG | 0.610989 | 3.4:+79407937 | MS.gene77453:CDS |
| GTGGACATATAACCCAGAAG+TGG | 0.612100 | 3.4:+79408845 | MS.gene77453:CDS |
| TTATTGGCAACTTCATAAGG+TGG | 0.612373 | 3.4:-79408096 | None:intergenic |
| CCTCCTCTCACGAACAACGT+GGG | 0.620111 | 3.4:-79408199 | None:intergenic |
| CCAGATGAGGCTGTTTCATG+GGG | 0.620617 | 3.4:+79405734 | MS.gene77453:CDS |
| AGGAAAGTGTCTCCAAATCG+AGG | 0.620843 | 3.4:+79401945 | MS.gene77453:CDS |
| GATGGGGAAGGCGAAGAAGG+AGG | 0.621967 | 3.4:+79408770 | MS.gene77453:CDS |
| AATCAGATAGAATCGGCTAG+AGG | 0.623094 | 3.4:+79408378 | MS.gene77453:CDS |
| ATGTTTGTCGTGTTTGTGGG+AGG | 0.623967 | 3.4:+79408283 | MS.gene77453:CDS |
| GGTTGATGAACCTATTGATG+AGG | 0.625189 | 3.4:+79402185 | MS.gene77453:CDS |
| AGCGTGAGCATGCGAAAAGG+CGG | 0.626856 | 3.4:+79408355 | MS.gene77453:CDS |
| ACTATGTCCACAATCAGACC+AGG | 0.627546 | 3.4:-79405435 | None:intergenic |
| AGGATGACAGAGGTCCTTGG+TGG | 0.631079 | 3.4:+79408961 | MS.gene77453:CDS |
| GTTAGATAGGCCGCAAGCTG+CGG | 0.632475 | 3.4:+79408542 | MS.gene77453:CDS |
| GTTGAAGCTAGATTGGAGGT+TGG | 0.633831 | 3.4:+79402164 | MS.gene77453:intron |
| TCATATTGATGATGACTACA+AGG | 0.634259 | 3.4:+79408941 | MS.gene77453:CDS |
| TTATGAAGGAAGCAAAGCTA+CGG | 0.640003 | 3.4:+79408658 | MS.gene77453:CDS |
| GGAAAGTGTCTCCAAATCGA+GGG | 0.640745 | 3.4:+79401946 | MS.gene77453:CDS |
| GAGGGTTATGATTTCAACCG+TGG | 0.648518 | 3.4:+79401964 | MS.gene77453:CDS |
| AACGCCAATATGATGCGCAA+TGG | 0.648917 | 3.4:+79405647 | MS.gene77453:CDS |
| TGGATATGATGGATCATAGG+CGG | 0.652070 | 3.4:+79408589 | MS.gene77453:CDS |
| GCTGTTGATAATCGACGCCA+CGG | 0.656868 | 3.4:-79401981 | None:intergenic |
| ATATATTGAAAAGATTGGAG+TGG | 0.659405 | 3.4:+79408826 | MS.gene77453:CDS |
| CCACAAACACGACAAACATG+AGG | 0.661362 | 3.4:-79408279 | None:intergenic |
| TTTGGAGACACTTTCCTGCG+AGG | 0.661904 | 3.4:-79401939 | None:intergenic |
| CTGATTGTGGACATAGTGCA+AGG | 0.662154 | 3.4:+79405441 | MS.gene77453:CDS |
| TCACCATGTGATGCTGACAA+AGG | 0.672957 | 3.4:-79402320 | None:intergenic |
| TGTTTCATGGGGAAAATACG+AGG | 0.687247 | 3.4:+79405745 | MS.gene77453:CDS |
| GAAGACTGTGGAGTGAACTG+AGG | 0.694757 | 3.4:-79401902 | None:intergenic |
| TCCTCTCACGAACAACGTGG+GGG | 0.698129 | 3.4:-79408197 | None:intergenic |
| TCGGAGTCTAATTTCCACCA+AGG | 0.709650 | 3.4:-79408975 | None:intergenic |
| GTAGTTGTTACAACTACAGG+TGG | 0.721014 | 3.4:+79403147 | MS.gene77453:CDS |
| CTATGTCCACAATCAGACCA+GGG | 0.729813 | 3.4:-79405434 | None:intergenic |
| GATGACTACAAGGATGACAG+AGG | 0.730694 | 3.4:+79408951 | MS.gene77453:CDS |
| GCGCAATGGTGCAGACTATG+CGG | 0.731569 | 3.4:+79405661 | MS.gene77453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 79401832 | 79409022 | 79401832 | ID=MS.gene77453 |
| chr3.4 | mRNA | 79401832 | 79409022 | 79401832 | ID=MS.gene77453.t1;Parent=MS.gene77453 |
| chr3.4 | exon | 79401832 | 79402077 | 79401832 | ID=MS.gene77453.t1.exon1;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79401832 | 79402077 | 79401832 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79402171 | 79402338 | 79402171 | ID=MS.gene77453.t1.exon2;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79402171 | 79402338 | 79402171 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79403141 | 79403359 | 79403141 | ID=MS.gene77453.t1.exon3;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79403141 | 79403359 | 79403141 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79405037 | 79405123 | 79405037 | ID=MS.gene77453.t1.exon4;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79405037 | 79405123 | 79405037 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79405357 | 79405462 | 79405357 | ID=MS.gene77453.t1.exon5;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79405357 | 79405462 | 79405357 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79405552 | 79405786 | 79405552 | ID=MS.gene77453.t1.exon6;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79405552 | 79405786 | 79405552 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79407762 | 79407819 | 79407762 | ID=MS.gene77453.t1.exon7;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79407762 | 79407819 | 79407762 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| chr3.4 | exon | 79407925 | 79409022 | 79407925 | ID=MS.gene77453.t1.exon8;Parent=MS.gene77453.t1 |
| chr3.4 | CDS | 79407925 | 79409022 | 79407925 | ID=cds.MS.gene77453.t1;Parent=MS.gene77453.t1 |
| Gene Sequence |
| Protein sequence |
