Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72142.t1 | XP_003630508.1 | 98.7 | 378 | 5 | 0 | 1 | 378 | 1 | 378 | 1.80E-203 | 718.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72142.t1 | Q9LDD5 | 64.8 | 352 | 121 | 2 | 1 | 352 | 1 | 349 | 4.6e-128 | 459.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72142.t1 | G7LHC1 | 98.7 | 378 | 5 | 0 | 1 | 378 | 1 | 378 | 1.3e-203 | 718.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene72142 | 0.823973 | 1.04E-53 | -1.69E-46 |
| MS.gene049230 | MS.gene72142 | 0.808263 | 3.37E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene72142 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene72142 | -0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene72142 | -0.811952 | 5.41E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene72142 | 0.80618 | 9.32E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene72142 | 0.84239 | 2.66E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene72142 | 0.821274 | 4.41E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene72142 | 0.854127 | 1.51E-61 | -1.69E-46 |
| MS.gene052188 | MS.gene72142 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene052340 | MS.gene72142 | 0.806308 | 8.76E-50 | -1.69E-46 |
| MS.gene052641 | MS.gene72142 | 0.811193 | 7.91E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene72142 | 0.821208 | 4.56E-53 | -1.69E-46 |
| MS.gene053494 | MS.gene72142 | 0.831993 | 1.22E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene72142 | 0.857307 | 1.78E-62 | -1.69E-46 |
| MS.gene054556 | MS.gene72142 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene72142 | 0.84634 | 2.31E-59 | -1.69E-46 |
| MS.gene05553 | MS.gene72142 | 0.81555 | 8.73E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene72142 | 0.829794 | 4.22E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene72142 | 0.827977 | 1.16E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene72142 | 0.811405 | 7.12E-51 | -1.69E-46 |
| MS.gene057199 | MS.gene72142 | 0.855741 | 5.15E-62 | -1.69E-46 |
| MS.gene057396 | MS.gene72142 | 0.822709 | 2.05E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene72142 | 0.812055 | 5.14E-51 | -1.69E-46 |
| MS.gene058371 | MS.gene72142 | 0.823078 | 1.68E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene72142 | 0.819656 | 1.04E-52 | -1.69E-46 |
| MS.gene058949 | MS.gene72142 | 0.820181 | 7.85E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene72142 | 0.837669 | 4.54E-57 | -1.69E-46 |
| MS.gene059511 | MS.gene72142 | 0.802705 | 4.94E-49 | -1.69E-46 |
| MS.gene059717 | MS.gene72142 | 0.839856 | 1.23E-57 | -1.69E-46 |
| MS.gene059788 | MS.gene72142 | 0.82124 | 4.48E-53 | -1.69E-46 |
| MS.gene060940 | MS.gene72142 | 0.8081 | 3.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72142.t1 | MTR_8g098300 | 98.677 | 378 | 5 | 0 | 1 | 378 | 1 | 378 | 0.0 | 764 |
| MS.gene72142.t1 | MTR_3g072340 | 31.780 | 236 | 143 | 5 | 132 | 359 | 122 | 347 | 1.10e-24 | 103 |
| MS.gene72142.t1 | MTR_4g091060 | 34.677 | 124 | 79 | 2 | 217 | 338 | 92 | 215 | 2.54e-12 | 67.0 |
| MS.gene72142.t1 | MTR_4g091060 | 34.677 | 124 | 79 | 2 | 217 | 338 | 33 | 156 | 3.99e-12 | 67.0 |
| MS.gene72142.t1 | MTR_4g091060 | 34.677 | 124 | 79 | 2 | 217 | 338 | 92 | 215 | 5.40e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72142.t1 | AT4G11570 | 63.978 | 372 | 128 | 3 | 1 | 372 | 1 | 366 | 6.60e-169 | 476 |
| MS.gene72142.t1 | AT4G11570 | 63.978 | 372 | 128 | 3 | 1 | 372 | 1 | 366 | 6.60e-169 | 476 |
| MS.gene72142.t1 | AT3G10970 | 29.915 | 234 | 150 | 4 | 132 | 359 | 124 | 349 | 8.60e-23 | 98.6 |
| MS.gene72142.t1 | AT3G10970 | 29.915 | 234 | 150 | 4 | 132 | 359 | 124 | 349 | 1.32e-22 | 98.2 |
| MS.gene72142.t1 | AT3G10970 | 29.915 | 234 | 149 | 4 | 132 | 359 | 124 | 348 | 2.71e-22 | 97.4 |
Find 111 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTGCAACTTCACTTCT+AGG | 0.185097 | 4.2:+6556217 | MS.gene72142:CDS |
| CAAGAGAAGCATATGCTTAT+AGG | 0.190015 | 4.2:+6556428 | MS.gene72142:CDS |
| CATCTGTTGACGAAAGTTTC+TGG | 0.200674 | 4.2:+6557316 | MS.gene72142:CDS |
| GCCGTTGAAACATCTGAATT+TGG | 0.201951 | 4.2:+6557240 | MS.gene72142:CDS |
| AGTGGTTGATTTGAAGAATT+TGG | 0.210569 | 4.2:+6557215 | MS.gene72142:CDS |
| TTGATCGAAAACCTGGTTTA+TGG | 0.215719 | 4.2:+6556497 | MS.gene72142:CDS |
| GCAGACTCAATAACCTTTCT+AGG | 0.239382 | 4.2:-6556925 | None:intergenic |
| GCTGCATACTCAAACATTTC+TGG | 0.243408 | 4.2:-6557024 | None:intergenic |
| CAAGCTTGCTTCTCTAAATC+AGG | 0.275894 | 4.2:-6556640 | None:intergenic |
| ATCTTACTATTACCTTTCTT+TGG | 0.295672 | 4.2:-6556463 | None:intergenic |
| GGAAATCTTTGAACATTTGT+AGG | 0.327446 | 4.2:+6556290 | MS.gene72142:CDS |
| ATTACACCAGCTGAGTTTCT+TGG | 0.342510 | 4.2:+6556313 | MS.gene72142:CDS |
| CTTGTCGTGTTCGTCGATTA+AGG | 0.346227 | 4.2:+6556387 | MS.gene72142:CDS |
| TTTGTGGTGGAAATTTGATT+AGG | 0.350020 | 4.2:+6556251 | MS.gene72142:CDS |
| AGGATGGGATGTGGTTGGTT+GGG | 0.376429 | 4.2:+6556577 | MS.gene72142:CDS |
| AGCATCCTGTGTATGAGCTT+GGG | 0.382829 | 4.2:+6557154 | MS.gene72142:CDS |
| CCGTTGAAACATCTGAATTT+GGG | 0.385167 | 4.2:+6557241 | MS.gene72142:CDS |
| GGGTGCTATATTTGAGTGGG+AGG | 0.385788 | 4.2:+6556597 | MS.gene72142:CDS |
| TTGTGGTGGAAATTTGATTA+GGG | 0.390599 | 4.2:+6556252 | MS.gene72142:CDS |
| AAGAGAAGCATATGCTTATA+GGG | 0.394947 | 4.2:+6556429 | MS.gene72142:CDS |
| CCTGAGAGGTGCATTGTGTT+TGG | 0.398840 | 4.2:+6557066 | MS.gene72142:CDS |
| TTATAAGATACCGATGGCTT+TGG | 0.405232 | 4.2:+6556891 | MS.gene72142:CDS |
| TACTCAAACATTTCTGGATC+AGG | 0.407802 | 4.2:-6557018 | None:intergenic |
| CTGAAGTGCTGTGTTGGTCC+AGG | 0.414685 | 4.2:+6556752 | MS.gene72142:CDS |
| TCTCATCTCAGTCCGGTCCC+TGG | 0.416483 | 4.2:-6556770 | None:intergenic |
| CTAGGCCACCGTCCTGTTTG+TGG | 0.423460 | 4.2:+6556235 | MS.gene72142:CDS |
| TGCTATATTTGAGTGGGAGG+GGG | 0.428411 | 4.2:+6556600 | MS.gene72142:CDS |
| TTTGTAATCAAGAGAATTGA+AGG | 0.428871 | 4.2:+6556706 | MS.gene72142:CDS |
| ATCAAATTTCCACCACAAAC+AGG | 0.429835 | 4.2:-6556247 | None:intergenic |
| GAGGATGGGATGTGGTTGGT+TGG | 0.436840 | 4.2:+6556576 | MS.gene72142:CDS |
| TCCAACTCCATCTCTAACTC+AGG | 0.442202 | 4.2:-6557273 | None:intergenic |
| TCCATCTCTAACTCAGGCTC+TGG | 0.443409 | 4.2:-6557267 | None:intergenic |
| CTGATTTAGAGAAGCAAGCT+TGG | 0.454499 | 4.2:+6556641 | MS.gene72142:CDS |
| AGCTGAGTTTCTTGGTGGAA+GGG | 0.455501 | 4.2:+6556321 | MS.gene72142:CDS |
| AAAGGTAATAGTAAGATTGA+TGG | 0.458624 | 4.2:+6556469 | MS.gene72142:CDS |
| TTGACTAAATCGAAACAAGA+TGG | 0.461640 | 4.2:+6556361 | MS.gene72142:CDS |
| CAGCTGAGTTTCTTGGTGGA+AGG | 0.462052 | 4.2:+6556320 | MS.gene72142:CDS |
| TGAGCTTGGGGCTGCAGACT+TGG | 0.463833 | 4.2:+6557167 | MS.gene72142:CDS |
| TGCTGTGTTGGTCCAGGGAC+CGG | 0.467379 | 4.2:+6556758 | MS.gene72142:CDS |
| GTTGGGTGCTATATTTGAGT+GGG | 0.469562 | 4.2:+6556594 | MS.gene72142:CDS |
| GGTTTCCACACGGCCTAGAA+AGG | 0.472140 | 4.2:+6556912 | MS.gene72142:CDS |
| AAAGGTTATTGAGTCTGCTA+TGG | 0.477419 | 4.2:+6556930 | MS.gene72142:CDS |
| AAGCATCCTGTGTATGAGCT+TGG | 0.478906 | 4.2:+6557153 | MS.gene72142:CDS |
| GTGCTATATTTGAGTGGGAG+GGG | 0.482066 | 4.2:+6556599 | MS.gene72142:CDS |
| CAGGTATGAAGTTCAAAAGC+TGG | 0.488956 | 4.2:-6557047 | None:intergenic |
| GAAGATAAGTTGCCAAAGAA+AGG | 0.491928 | 4.2:+6556451 | MS.gene72142:CDS |
| AGACTTGGTTGTGAGGCGTC+TGG | 0.497036 | 4.2:+6557182 | MS.gene72142:CDS |
| CTTGTCCTCGCTCAAGAAGA+AGG | 0.506890 | 4.2:+6556664 | MS.gene72142:CDS |
| GGTTGGGTGCTATATTTGAG+TGG | 0.509627 | 4.2:+6556593 | MS.gene72142:CDS |
| AAGGTTATTGAGTCTGCTAT+GGG | 0.510091 | 4.2:+6556931 | MS.gene72142:CDS |
| CAGTGTTATTGTTGCAGCAG+AGG | 0.510106 | 4.2:+6556978 | MS.gene72142:CDS |
| GAAGGAAAACCCTCTCCTCC+TGG | 0.511421 | 4.2:+6556682 | MS.gene72142:CDS |
| GGTGCTATATTTGAGTGGGA+GGG | 0.515183 | 4.2:+6556598 | MS.gene72142:CDS |
| CCTGGGTCTAAAGAGTTTGT+CGG | 0.518072 | 4.2:+6556856 | MS.gene72142:CDS |
| CAATTTCTGAAGTGCTGTGT+TGG | 0.522327 | 4.2:+6556746 | MS.gene72142:CDS |
| GAGAAGAATGGCTAACAGAA+AGG | 0.529818 | 4.2:+6556789 | MS.gene72142:CDS |
| CCAAACACAATGCACCTCTC+AGG | 0.532361 | 4.2:-6557066 | None:intergenic |
| GCATCCTGTGTATGAGCTTG+GGG | 0.534751 | 4.2:+6557155 | MS.gene72142:CDS |
| ATATCCCGCCTTGTAAAGCT+TGG | 0.536306 | 4.2:-6556822 | None:intergenic |
| GCCTGAGTTAGAGATGGAGT+TGG | 0.536597 | 4.2:+6557272 | MS.gene72142:CDS |
| TGAAGTGCTGTGTTGGTCCA+GGG | 0.538830 | 4.2:+6556753 | MS.gene72142:CDS |
| AGCAAAGGATTTCTAAGCGA+AGG | 0.539172 | 4.2:-6556544 | None:intergenic |
| CCATTCTTCTCATCTCAGTC+CGG | 0.542347 | 4.2:-6556777 | None:intergenic |
| GGTGGCTTTGATCGAAAACC+TGG | 0.543397 | 4.2:+6556490 | MS.gene72142:CDS |
| TCTTGTTTCGATTTAGTCAA+AGG | 0.545553 | 4.2:-6556358 | None:intergenic |
| CGATGGCTTTGGTTTCCACA+CGG | 0.547494 | 4.2:+6556902 | MS.gene72142:CDS |
| ATCCTCTCTTGTCGAAGCAA+AGG | 0.547575 | 4.2:-6556559 | None:intergenic |
| ATTACAAAACCAGGAGGAGA+GGG | 0.547764 | 4.2:-6556691 | None:intergenic |
| GGGATATATAGTCTCATGCC+TGG | 0.548314 | 4.2:+6556838 | MS.gene72142:CDS |
| CCCAAATTCAGATGTTTCAA+CGG | 0.548857 | 4.2:-6557241 | None:intergenic |
| TGACTAAATCGAAACAAGAT+GGG | 0.550029 | 4.2:+6556362 | MS.gene72142:CDS |
| AAGCTTGCTTCTCTAAATCA+GGG | 0.551609 | 4.2:-6556639 | None:intergenic |
| CGACAAGAGAGGATGGGATG+TGG | 0.551949 | 4.2:+6556568 | MS.gene72142:CDS |
| ACACCAGCTGAGTTTCTTGG+TGG | 0.552376 | 4.2:+6556316 | MS.gene72142:CDS |
| TTGCAGCAGAGGATGTTCAC+AGG | 0.553773 | 4.2:+6556989 | MS.gene72142:CDS |
| TCCAGAGCCTGAGTTAGAGA+TGG | 0.562490 | 4.2:+6557266 | MS.gene72142:CDS |
| TTTGCTTCGACAAGAGAGGA+TGG | 0.562867 | 4.2:+6556561 | MS.gene72142:CDS |
| TCTACCAAGCTTTACAAGGC+GGG | 0.565330 | 4.2:+6556818 | MS.gene72142:CDS |
| CCGGACTGAGATGAGAAGAA+TGG | 0.567362 | 4.2:+6556777 | MS.gene72142:CDS |
| GAAATCTACCAAGCTTTACA+AGG | 0.571632 | 4.2:+6556814 | MS.gene72142:CDS |
| GGGCTGCAGACTTGGTTGTG+AGG | 0.572115 | 4.2:+6557175 | MS.gene72142:CDS |
| GGCCACCGTCCTGTTTGTGG+TGG | 0.577947 | 4.2:+6556238 | MS.gene72142:CDS |
| AGGTATGAAGTTCAAAAGCT+GGG | 0.579562 | 4.2:-6557046 | None:intergenic |
| GGTAATAGTAAGATTGATGG+TGG | 0.581002 | 4.2:+6556472 | MS.gene72142:CDS |
| ATCCTTTGCTTCGACAAGAG+AGG | 0.581251 | 4.2:+6556557 | MS.gene72142:CDS |
| AAAACCTGGTTTATGGCCAC+CGG | 0.581737 | 4.2:+6556504 | MS.gene72142:CDS |
| CTTCCACCAAGAAACTCAGC+TGG | 0.586489 | 4.2:-6556319 | None:intergenic |
| ATTCTCTTGATTACAAAACC+AGG | 0.589121 | 4.2:-6556700 | None:intergenic |
| TTGCTTCGACAAGAGAGGAT+GGG | 0.591873 | 4.2:+6556562 | MS.gene72142:CDS |
| GATTACAAAACCAGGAGGAG+AGG | 0.594798 | 4.2:-6556692 | None:intergenic |
| GGTTATTGAGTCTGCTATGG+GGG | 0.596203 | 4.2:+6556933 | MS.gene72142:CDS |
| TGCAGCAGAGGATGTTCACA+GGG | 0.596268 | 4.2:+6556990 | MS.gene72142:CDS |
| GATGCATTATAAGATACCGA+TGG | 0.597488 | 4.2:+6556885 | MS.gene72142:CDS |
| GCGTCTGGACGAGCTTTCAG+TGG | 0.603216 | 4.2:+6557197 | MS.gene72142:CDS |
| GGATATATAGTCTCATGCCT+GGG | 0.605411 | 4.2:+6556839 | MS.gene72142:CDS |
| GCAGCCCCAAGCTCATACAC+AGG | 0.617281 | 4.2:-6557159 | None:intergenic |
| TTAGGGATGTATCTGTGAAG+AGG | 0.626360 | 4.2:+6556269 | MS.gene72142:CDS |
| CGTGTGGAAACCAAAGCCAT+CGG | 0.648842 | 4.2:-6556901 | None:intergenic |
| CCGACAAACTCTTTAGACCC+AGG | 0.662952 | 4.2:-6556856 | None:intergenic |
| AAGAGAGGATGGGATGTGGT+TGG | 0.664389 | 4.2:+6556572 | MS.gene72142:CDS |
| TGGAGGCTGCACATGATGCA+CGG | 0.668094 | 4.2:+6557106 | MS.gene72142:CDS |
| AGGTTATTGAGTCTGCTATG+GGG | 0.668758 | 4.2:+6556932 | MS.gene72142:CDS |
| AAACTCAAATCTGACAGTGG+AGG | 0.675659 | 4.2:+6557089 | MS.gene72142:CDS |
| AATTTCCACCACAAACAGGA+CGG | 0.677839 | 4.2:-6556243 | None:intergenic |
| ATCTACCAAGCTTTACAAGG+CGG | 0.691680 | 4.2:+6556817 | MS.gene72142:CDS |
| CTCTTGATTACAAAACCAGG+AGG | 0.692526 | 4.2:-6556697 | None:intergenic |
| AATAACCTTTCTAGGCCGTG+TGG | 0.699787 | 4.2:-6556917 | None:intergenic |
| TTCCACCACAAACAGGACGG+TGG | 0.699959 | 4.2:-6556240 | None:intergenic |
| TGGAAACTCAAATCTGACAG+TGG | 0.717600 | 4.2:+6557086 | MS.gene72142:CDS |
| ATGGCCACCGGAAAATAGAG+CGG | 0.718116 | 4.2:+6556516 | MS.gene72142:CDS |
| GCAGCAGAGGATGTTCACAG+GGG | 0.795333 | 4.2:+6556991 | MS.gene72142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAGGTAATAGTAAGATTGA+TGG | + | chr4.2:6556469-6556488 | MS.gene72142:CDS | 25.0% |
| ! | ATCTTACTATTACCTTTCTT+TGG | - | chr4.2:6556466-6556485 | None:intergenic | 25.0% |
| ! | TTTGTAATCAAGAGAATTGA+AGG | + | chr4.2:6556706-6556725 | MS.gene72142:CDS | 25.0% |
| ATTCTCTTGATTACAAAACC+AGG | - | chr4.2:6556703-6556722 | None:intergenic | 30.0% | |
| GGAAATCTTTGAACATTTGT+AGG | + | chr4.2:6556290-6556309 | MS.gene72142:CDS | 30.0% | |
| TGACTAAATCGAAACAAGAT+GGG | + | chr4.2:6556362-6556381 | MS.gene72142:CDS | 30.0% | |
| TTGACTAAATCGAAACAAGA+TGG | + | chr4.2:6556361-6556380 | MS.gene72142:CDS | 30.0% | |
| ! | AAGAGAAGCATATGCTTATA+GGG | + | chr4.2:6556429-6556448 | MS.gene72142:CDS | 30.0% |
| ! | TCTTGTTTCGATTTAGTCAA+AGG | - | chr4.2:6556361-6556380 | None:intergenic | 30.0% |
| ! | TTGTGGTGGAAATTTGATTA+GGG | + | chr4.2:6556252-6556271 | MS.gene72142:CDS | 30.0% |
| ! | TTTGTGGTGGAAATTTGATT+AGG | + | chr4.2:6556251-6556270 | MS.gene72142:CDS | 30.0% |
| !! | AGTGGTTGATTTGAAGAATT+TGG | + | chr4.2:6557215-6557234 | MS.gene72142:CDS | 30.0% |
| AAAGGTTATTGAGTCTGCTA+TGG | + | chr4.2:6556930-6556949 | MS.gene72142:CDS | 35.0% | |
| AAGGTTATTGAGTCTGCTAT+GGG | + | chr4.2:6556931-6556950 | MS.gene72142:CDS | 35.0% | |
| AGGTATGAAGTTCAAAAGCT+GGG | - | chr4.2:6557049-6557068 | None:intergenic | 35.0% | |
| ATCAAATTTCCACCACAAAC+AGG | - | chr4.2:6556250-6556269 | None:intergenic | 35.0% | |
| CCCAAATTCAGATGTTTCAA+CGG | - | chr4.2:6557244-6557263 | None:intergenic | 35.0% | |
| CCGTTGAAACATCTGAATTT+GGG | + | chr4.2:6557241-6557260 | MS.gene72142:CDS | 35.0% | |
| GAAATCTACCAAGCTTTACA+AGG | + | chr4.2:6556814-6556833 | MS.gene72142:CDS | 35.0% | |
| GAAGATAAGTTGCCAAAGAA+AGG | + | chr4.2:6556451-6556470 | MS.gene72142:CDS | 35.0% | |
| GATGCATTATAAGATACCGA+TGG | + | chr4.2:6556885-6556904 | MS.gene72142:CDS | 35.0% | |
| GGTAATAGTAAGATTGATGG+TGG | + | chr4.2:6556472-6556491 | MS.gene72142:CDS | 35.0% | |
| TTATAAGATACCGATGGCTT+TGG | + | chr4.2:6556891-6556910 | MS.gene72142:CDS | 35.0% | |
| TTGATCGAAAACCTGGTTTA+TGG | + | chr4.2:6556497-6556516 | MS.gene72142:CDS | 35.0% | |
| ! | AAGCTTGCTTCTCTAAATCA+GGG | - | chr4.2:6556642-6556661 | None:intergenic | 35.0% |
| ! | CAAGAGAAGCATATGCTTAT+AGG | + | chr4.2:6556428-6556447 | MS.gene72142:CDS | 35.0% |
| ! | TACTCAAACATTTCTGGATC+AGG | - | chr4.2:6557021-6557040 | None:intergenic | 35.0% |
| ! | TGAAGGTATGAAAAACGAAC+AGG | + | chr4.2:6556723-6556742 | MS.gene72142:CDS | 35.0% |
| ! | TTTTGAACTTCATACCTGAG+AGG | + | chr4.2:6557052-6557071 | MS.gene72142:CDS | 35.0% |
| AAACTCAAATCTGACAGTGG+AGG | + | chr4.2:6557089-6557108 | MS.gene72142:CDS | 40.0% | |
| AATTTCCACCACAAACAGGA+CGG | - | chr4.2:6556246-6556265 | None:intergenic | 40.0% | |
| AGCAAAGGATTTCTAAGCGA+AGG | - | chr4.2:6556547-6556566 | None:intergenic | 40.0% | |
| AGGTTATTGAGTCTGCTATG+GGG | + | chr4.2:6556932-6556951 | MS.gene72142:CDS | 40.0% | |
| ATCTACCAAGCTTTACAAGG+CGG | + | chr4.2:6556817-6556836 | MS.gene72142:CDS | 40.0% | |
| ATTACAAAACCAGGAGGAGA+GGG | - | chr4.2:6556694-6556713 | None:intergenic | 40.0% | |
| ATTACACCAGCTGAGTTTCT+TGG | + | chr4.2:6556313-6556332 | MS.gene72142:CDS | 40.0% | |
| ATTGCTGCAACTTCACTTCT+AGG | + | chr4.2:6556217-6556236 | MS.gene72142:CDS | 40.0% | |
| CAGGTATGAAGTTCAAAAGC+TGG | - | chr4.2:6557050-6557069 | None:intergenic | 40.0% | |
| CATCTGTTGACGAAAGTTTC+TGG | + | chr4.2:6557316-6557335 | MS.gene72142:CDS | 40.0% | |
| CTCTTGATTACAAAACCAGG+AGG | - | chr4.2:6556700-6556719 | None:intergenic | 40.0% | |
| CTGATTTAGAGAAGCAAGCT+TGG | + | chr4.2:6556641-6556660 | MS.gene72142:CDS | 40.0% | |
| GAGAAGAATGGCTAACAGAA+AGG | + | chr4.2:6556789-6556808 | MS.gene72142:CDS | 40.0% | |
| GCAGACTCAATAACCTTTCT+AGG | - | chr4.2:6556928-6556947 | None:intergenic | 40.0% | |
| GCCGTTGAAACATCTGAATT+TGG | + | chr4.2:6557240-6557259 | MS.gene72142:CDS | 40.0% | |
| GCTGCATACTCAAACATTTC+TGG | - | chr4.2:6557027-6557046 | None:intergenic | 40.0% | |
| GGATATATAGTCTCATGCCT+GGG | + | chr4.2:6556839-6556858 | MS.gene72142:CDS | 40.0% | |
| TGGAAACTCAAATCTGACAG+TGG | + | chr4.2:6557086-6557105 | MS.gene72142:CDS | 40.0% | |
| TTAGGGATGTATCTGTGAAG+AGG | + | chr4.2:6556269-6556288 | MS.gene72142:CDS | 40.0% | |
| ! | CAAGCTTGCTTCTCTAAATC+AGG | - | chr4.2:6556643-6556662 | None:intergenic | 40.0% |
| ! | GTTGGGTGCTATATTTGAGT+GGG | + | chr4.2:6556594-6556613 | MS.gene72142:CDS | 40.0% |
| !! | CAATTTCTGAAGTGCTGTGT+TGG | + | chr4.2:6556746-6556765 | MS.gene72142:CDS | 40.0% |
| AAAACCTGGTTTATGGCCAC+CGG | + | chr4.2:6556504-6556523 | MS.gene72142:CDS | 45.0% | |
| AAGCATCCTGTGTATGAGCT+TGG | + | chr4.2:6557153-6557172 | MS.gene72142:CDS | 45.0% | |
| AATAACCTTTCTAGGCCGTG+TGG | - | chr4.2:6556920-6556939 | None:intergenic | 45.0% | |
| AGCATCCTGTGTATGAGCTT+GGG | + | chr4.2:6557154-6557173 | MS.gene72142:CDS | 45.0% | |
| AGCTGAGTTTCTTGGTGGAA+GGG | + | chr4.2:6556321-6556340 | MS.gene72142:CDS | 45.0% | |
| ATATCCCGCCTTGTAAAGCT+TGG | - | chr4.2:6556825-6556844 | None:intergenic | 45.0% | |
| ATCCTCTCTTGTCGAAGCAA+AGG | - | chr4.2:6556562-6556581 | None:intergenic | 45.0% | |
| ATCCTTTGCTTCGACAAGAG+AGG | + | chr4.2:6556557-6556576 | MS.gene72142:CDS | 45.0% | |
| CCATTCTTCTCATCTCAGTC+CGG | - | chr4.2:6556780-6556799 | None:intergenic | 45.0% | |
| CCTGGGTCTAAAGAGTTTGT+CGG | + | chr4.2:6556856-6556875 | MS.gene72142:CDS | 45.0% | |
| GATTACAAAACCAGGAGGAG+AGG | - | chr4.2:6556695-6556714 | None:intergenic | 45.0% | |
| GGGATATATAGTCTCATGCC+TGG | + | chr4.2:6556838-6556857 | MS.gene72142:CDS | 45.0% | |
| GGTTATTGAGTCTGCTATGG+GGG | + | chr4.2:6556933-6556952 | MS.gene72142:CDS | 45.0% | |
| GTGCTATATTTGAGTGGGAG+GGG | + | chr4.2:6556599-6556618 | MS.gene72142:CDS | 45.0% | |
| TCCAACTCCATCTCTAACTC+AGG | - | chr4.2:6557276-6557295 | None:intergenic | 45.0% | |
| TCTACCAAGCTTTACAAGGC+GGG | + | chr4.2:6556818-6556837 | MS.gene72142:CDS | 45.0% | |
| TGCTATATTTGAGTGGGAGG+GGG | + | chr4.2:6556600-6556619 | MS.gene72142:CDS | 45.0% | |
| TTGCTTCGACAAGAGAGGAT+GGG | + | chr4.2:6556562-6556581 | MS.gene72142:CDS | 45.0% | |
| TTTGCTTCGACAAGAGAGGA+TGG | + | chr4.2:6556561-6556580 | MS.gene72142:CDS | 45.0% | |
| ! | CAGTGTTATTGTTGCAGCAG+AGG | + | chr4.2:6556978-6556997 | MS.gene72142:CDS | 45.0% |
| ! | CTTGTCGTGTTCGTCGATTA+AGG | + | chr4.2:6556387-6556406 | MS.gene72142:CDS | 45.0% |
| ! | GGCTTATCCGCTCTATTTTC+CGG | - | chr4.2:6556526-6556545 | None:intergenic | 45.0% |
| ! | GGTGCTATATTTGAGTGGGA+GGG | + | chr4.2:6556598-6556617 | MS.gene72142:CDS | 45.0% |
| ! | GGTTGGGTGCTATATTTGAG+TGG | + | chr4.2:6556593-6556612 | MS.gene72142:CDS | 45.0% |
| ! | GTTTTCCTTCTTCTTGAGCG+AGG | - | chr4.2:6556672-6556691 | None:intergenic | 45.0% |
| ! | TTATCCGCTCTATTTTCCGG+TGG | - | chr4.2:6556523-6556542 | None:intergenic | 45.0% |
| AAGAGAGGATGGGATGTGGT+TGG | + | chr4.2:6556572-6556591 | MS.gene72142:CDS | 50.0% | |
| ACACCAGCTGAGTTTCTTGG+TGG | + | chr4.2:6556316-6556335 | MS.gene72142:CDS | 50.0% | |
| ATGGCCACCGGAAAATAGAG+CGG | + | chr4.2:6556516-6556535 | MS.gene72142:CDS | 50.0% | |
| CAGCTGAGTTTCTTGGTGGA+AGG | + | chr4.2:6556320-6556339 | MS.gene72142:CDS | 50.0% | |
| CCAAACACAATGCACCTCTC+AGG | - | chr4.2:6557069-6557088 | None:intergenic | 50.0% | |
| CCGACAAACTCTTTAGACCC+AGG | - | chr4.2:6556859-6556878 | None:intergenic | 50.0% | |
| CCGGACTGAGATGAGAAGAA+TGG | + | chr4.2:6556777-6556796 | MS.gene72142:CDS | 50.0% | |
| CGTGTGGAAACCAAAGCCAT+CGG | - | chr4.2:6556904-6556923 | None:intergenic | 50.0% | |
| CTTCCACCAAGAAACTCAGC+TGG | - | chr4.2:6556322-6556341 | None:intergenic | 50.0% | |
| CTTGTCCTCGCTCAAGAAGA+AGG | + | chr4.2:6556664-6556683 | MS.gene72142:CDS | 50.0% | |
| GCATCCTGTGTATGAGCTTG+GGG | + | chr4.2:6557155-6557174 | MS.gene72142:CDS | 50.0% | |
| GCCTGAGTTAGAGATGGAGT+TGG | + | chr4.2:6557272-6557291 | MS.gene72142:CDS | 50.0% | |
| TCCAGAGCCTGAGTTAGAGA+TGG | + | chr4.2:6557266-6557285 | MS.gene72142:CDS | 50.0% | |
| TCCATCTCTAACTCAGGCTC+TGG | - | chr4.2:6557270-6557289 | None:intergenic | 50.0% | |
| TGCAGCAGAGGATGTTCACA+GGG | + | chr4.2:6556990-6557009 | MS.gene72142:CDS | 50.0% | |
| TTGCAGCAGAGGATGTTCAC+AGG | + | chr4.2:6556989-6557008 | MS.gene72142:CDS | 50.0% | |
| ! | AGGATGGGATGTGGTTGGTT+GGG | + | chr4.2:6556577-6556596 | MS.gene72142:CDS | 50.0% |
| ! | CCTGAGAGGTGCATTGTGTT+TGG | + | chr4.2:6557066-6557085 | MS.gene72142:CDS | 50.0% |
| ! | GGGTGCTATATTTGAGTGGG+AGG | + | chr4.2:6556597-6556616 | MS.gene72142:CDS | 50.0% |
| ! | TTTTCCGGTGGCCATAAACC+AGG | - | chr4.2:6556511-6556530 | None:intergenic | 50.0% |
| !! | CGATGGCTTTGGTTTCCACA+CGG | + | chr4.2:6556902-6556921 | MS.gene72142:CDS | 50.0% |
| !! | GGTGGCTTTGATCGAAAACC+TGG | + | chr4.2:6556490-6556509 | MS.gene72142:CDS | 50.0% |
| !! | TGAAGTGCTGTGTTGGTCCA+GGG | + | chr4.2:6556753-6556772 | MS.gene72142:CDS | 50.0% |
| CGACAAGAGAGGATGGGATG+TGG | + | chr4.2:6556568-6556587 | MS.gene72142:CDS | 55.0% | |
| GAAGGAAAACCCTCTCCTCC+TGG | + | chr4.2:6556682-6556701 | MS.gene72142:CDS | 55.0% | |
| GAGGATGGGATGTGGTTGGT+TGG | + | chr4.2:6556576-6556595 | MS.gene72142:CDS | 55.0% | |
| GAGTCTGCTATGGGGGAAGT+TGG | + | chr4.2:6556940-6556959 | MS.gene72142:CDS | 55.0% | |
| GCAGCAGAGGATGTTCACAG+GGG | + | chr4.2:6556991-6557010 | MS.gene72142:CDS | 55.0% | |
| GGTTTCCACACGGCCTAGAA+AGG | + | chr4.2:6556912-6556931 | MS.gene72142:CDS | 55.0% | |
| TGGAGGCTGCACATGATGCA+CGG | + | chr4.2:6557106-6557125 | MS.gene72142:CDS | 55.0% | |
| TTCCACCACAAACAGGACGG+TGG | - | chr4.2:6556243-6556262 | None:intergenic | 55.0% | |
| ! | AGACTTGGTTGTGAGGCGTC+TGG | + | chr4.2:6557182-6557201 | MS.gene72142:CDS | 55.0% |
| !! | CTGAAGTGCTGTGTTGGTCC+AGG | + | chr4.2:6556752-6556771 | MS.gene72142:CDS | 55.0% |
| CTAGGCCACCGTCCTGTTTG+TGG | + | chr4.2:6556235-6556254 | MS.gene72142:CDS | 60.0% | |
| GCAGCCCCAAGCTCATACAC+AGG | - | chr4.2:6557162-6557181 | None:intergenic | 60.0% | |
| GCGTCTGGACGAGCTTTCAG+TGG | + | chr4.2:6557197-6557216 | MS.gene72142:CDS | 60.0% | |
| TCTCATCTCAGTCCGGTCCC+TGG | - | chr4.2:6556773-6556792 | None:intergenic | 60.0% | |
| TGAGCTTGGGGCTGCAGACT+TGG | + | chr4.2:6557167-6557186 | MS.gene72142:CDS | 60.0% | |
| ! | GGGCTGCAGACTTGGTTGTG+AGG | + | chr4.2:6557175-6557194 | MS.gene72142:CDS | 60.0% |
| ! | TGCTGTGTTGGTCCAGGGAC+CGG | + | chr4.2:6556758-6556777 | MS.gene72142:CDS | 60.0% |
| GGCCACCGTCCTGTTTGTGG+TGG | + | chr4.2:6556238-6556257 | MS.gene72142:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 6556205 | 6557341 | 6556205 | ID=MS.gene72142 |
| chr4.2 | mRNA | 6556205 | 6557341 | 6556205 | ID=MS.gene72142.t1;Parent=MS.gene72142 |
| chr4.2 | exon | 6556205 | 6557341 | 6556205 | ID=MS.gene72142.t1.exon1;Parent=MS.gene72142.t1 |
| chr4.2 | CDS | 6556205 | 6557341 | 6556205 | ID=cds.MS.gene72142.t1;Parent=MS.gene72142.t1 |
| Gene Sequence |
| Protein sequence |
