AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05476

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05476.t1 MTR_6g084680 97.663 599 14 0 1 599 1 599 0.0 1213
MS.gene05476.t1 MTR_8g104110 69.667 600 148 10 7 597 4 578 0.0 824
MS.gene05476.t1 MTR_8g104120 68.174 597 160 7 7 597 4 576 0.0 795
MS.gene05476.t1 MTR_8g104130 64.576 590 166 10 20 599 12 568 0.0 724
MS.gene05476.t1 MTR_1g111250 53.780 582 232 10 1 580 1 547 0.0 593
MS.gene05476.t1 MTR_1g115175 31.862 521 317 11 58 576 14 498 1.98e-81 266
MS.gene05476.t1 MTR_5g014310 33.459 532 297 13 71 586 40 530 4.94e-81 265
MS.gene05476.t1 MTR_1g077660 36.220 381 225 6 48 426 13 377 9.37e-80 259
MS.gene05476.t1 MTR_4g098570 34.442 511 293 11 71 576 32 505 2.15e-79 260
MS.gene05476.t1 MTR_1g115190 33.270 526 309 12 58 576 15 505 1.92e-78 258
MS.gene05476.t1 MTR_1g115140 31.226 522 321 12 58 576 18 504 2.48e-77 255
MS.gene05476.t1 MTR_1g077670 35.696 381 228 6 48 426 19 384 9.08e-74 244
MS.gene05476.t1 MTR_4g098610 32.621 515 297 10 71 576 32 505 1.23e-69 234
MS.gene05476.t1 MTR_2g087288 37.463 339 198 5 70 405 23 350 4.27e-69 231
MS.gene05476.t1 MTR_2g087285 35.632 348 207 7 64 407 17 351 4.70e-62 212
MS.gene05476.t1 MTR_4g051575 31.233 365 237 5 44 407 4 355 1.02e-60 209
MS.gene05476.t1 MTR_7g094770 34.503 342 205 8 89 424 61 389 2.49e-60 207
MS.gene05476.t1 MTR_7g106260 34.977 426 245 10 84 500 42 444 2.49e-60 208
MS.gene05476.t1 MTR_6g015325 70.238 84 23 1 139 222 7 88 5.58e-33 122
MS.gene05476.t1 MTR_4g051575 29.224 219 145 3 190 407 12 221 2.75e-32 127
MS.gene05476.t1 MTR_1g077870 71.429 84 22 1 136 219 189 270 6.10e-32 125
MS.gene05476.t1 MTR_0710s0020 44.767 172 88 4 58 227 15 181 2.34e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05476.t1 AT3G18440 60.804 597 191 10 10 587 4 576 0.0 694
MS.gene05476.t1 AT1G18420 56.923 585 206 13 12 580 27 581 0.0 625
MS.gene05476.t1 AT1G18420 59.961 512 175 9 85 580 1 498 0.0 597
MS.gene05476.t1 AT1G25480 53.415 571 233 9 20 583 4 548 0.0 559
MS.gene05476.t1 AT1G68600 53.803 539 219 7 46 580 21 533 0.0 538
MS.gene05476.t1 AT2G17470 54.159 517 206 7 84 591 53 547 0.0 530
MS.gene05476.t1 AT2G17470 54.159 517 206 7 84 591 31 525 0.0 529
MS.gene05476.t1 AT5G46610 32.381 525 324 9 60 576 17 518 3.26e-87 281
MS.gene05476.t1 AT4G17970 30.798 539 314 7 68 576 23 532 2.53e-86 280
MS.gene05476.t1 AT5G46600 31.204 548 347 13 35 576 2 525 1.66e-78 258
MS.gene05476.t1 AT4G00910 37.119 361 211 7 75 428 46 397 6.77e-75 247
MS.gene05476.t1 AT5G46610 29.333 525 316 10 60 576 17 494 3.44e-70 236
MS.gene05476.t1 AT1G08430 33.913 345 217 7 73 413 2 339 4.72e-69 232
MS.gene05476.t1 AT1G08440 34.639 332 209 5 75 405 4 328 2.71e-67 228
MS.gene05476.t1 AT5G46610 28.381 525 298 10 60 576 17 471 1.88e-65 223
MS.gene05476.t1 AT3G11680 37.609 343 194 6 64 405 25 348 1.02e-64 220
MS.gene05476.t1 AT3G11680 37.609 343 194 6 64 405 23 346 1.13e-64 220
MS.gene05476.t1 AT2G27240 34.663 326 205 5 89 413 18 336 1.33e-63 217
MS.gene05476.t1 AT2G27240 33.429 350 203 7 89 413 18 362 9.68e-61 210

Find 117 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCACAGGGTACCCAAAT+TGG 0.161108 6.2:+83489527 MS.gene05476:CDS
GTTTAATTGTTTCAAATCTA+AGG 0.221413 6.2:+83494945 MS.gene05476:CDS
ACTCAGGCATTGTGCATTTA+TGG 0.225741 6.2:+83493337 MS.gene05476:CDS
ACAATGAAGGCTTATGAATA+TGG 0.228453 6.2:+83492401 MS.gene05476:CDS
TATTGTTACGTTATTGTATC+TGG 0.230169 6.2:+83492446 MS.gene05476:CDS
TGAGAAACATTCTCGTTTCT+TGG 0.242314 6.2:-83494511 None:intergenic
GTGACGGAAGGAACCCAATT+TGG 0.242848 6.2:-83489541 None:intergenic
AGGTGAGAAAGCAAAGTTTA+AGG 0.271199 6.2:+83494876 MS.gene05476:CDS
AAAGGTCTAAACAGAGGATT+AGG 0.284845 6.2:+83492152 MS.gene05476:CDS
ATGTGTGCATATATCCAATA+TGG 0.288826 6.2:+83492552 MS.gene05476:CDS
GGATGAAGAAAGACATTTCT+TGG 0.297160 6.2:+83494549 MS.gene05476:CDS
CAGATGGGATCGTGGAGTTC+TGG 0.299939 6.2:+83489709 MS.gene05476:CDS
TCATCATCGTCGTCGGATTC+CGG 0.332728 6.2:-83489645 None:intergenic
ATGAAAGGTGGCGGTGGCGG+TGG 0.333630 6.2:+83489597 MS.gene05476:CDS
TTACCGACGAAAACATGTTT+AGG 0.343971 6.2:+83494683 MS.gene05476:CDS
ACAAATCGGCATCCCTTTAC+CGG 0.358676 6.2:+83489626 MS.gene05476:CDS
ATTGGGAATGCTGTCAAAAT+TGG 0.369611 6.2:+83492205 MS.gene05476:CDS
AGATCTTCACCGGCCCATAT+TGG 0.373138 6.2:-83492566 None:intergenic
TAATGAACTAGCACTTTCAT+AGG 0.375230 6.2:-83494776 None:intergenic
ATGGTTAGCATCTTCATTGT+AGG 0.378298 6.2:+83492260 MS.gene05476:CDS
TATTCATAAGCCTTCATTGT+TGG 0.386844 6.2:-83492398 None:intergenic
TTTCTTCATCCATTTGTAAG+AGG 0.389222 6.2:-83494537 None:intergenic
TGTTGGGAAGTACTCTGTTT+GGG 0.395794 6.2:+83489869 MS.gene05476:CDS
ATGTTGGGAAGTACTCTGTT+TGG 0.397740 6.2:+83489868 MS.gene05476:CDS
GGAGGACTTGCTTTAGCATT+GGG 0.398305 6.2:+83492188 MS.gene05476:CDS
TCGTCGTCGGATTCCGGTAA+AGG 0.418624 6.2:-83489639 None:intergenic
TCCCACAGGGTACCCAAATT+GGG 0.418630 6.2:+83489528 MS.gene05476:CDS
GCTGAAAACACAAACTTCCT+TGG 0.420798 6.2:-83489783 None:intergenic
AGCTGTGGGAAATCGGTAAC+AGG 0.424395 6.2:+83494488 MS.gene05476:CDS
CGACGGTGGTGTTCGTTTCG+AGG 0.427512 6.2:+83489681 MS.gene05476:CDS
TGACGGAAGGAACCCAATTT+GGG 0.431746 6.2:-83489540 None:intergenic
TTACCTTCTTAAGCTCTTTG+CGG 0.432353 6.2:-83494312 None:intergenic
ACAGAGTACTTCCCAACATC+TGG 0.433300 6.2:-83489864 None:intergenic
AAACAACCGTTTCCAGATGT+TGG 0.434028 6.2:+83489852 MS.gene05476:CDS
CGTCGTCGGATTCCGGTAAA+GGG 0.434069 6.2:-83489638 None:intergenic
AATGCAGAGCTGTGGGAAAT+CGG 0.437214 6.2:+83494481 MS.gene05476:CDS
TTCTCAAGACCTCTTACAAA+TGG 0.444082 6.2:+83494528 MS.gene05476:CDS
CTGTCAAAATTGGCTGGACC+TGG 0.444488 6.2:+83492215 MS.gene05476:CDS
AGATACAATAACGTAACAAT+AGG 0.444661 6.2:-83492444 None:intergenic
AACAACCGTTTCCAGATGTT+GGG 0.444870 6.2:+83489853 MS.gene05476:CDS
CAACAAGAACTTGTAACATC+TGG 0.450503 6.2:+83494910 MS.gene05476:CDS
ACGTAGAACTTTAGTCGCTT+CGG 0.460306 6.2:-83494338 None:intergenic
AAGAATTTGAAACGTGTGGC+GGG 0.462155 6.2:+83489732 MS.gene05476:CDS
ACAATTTCTTCCCACTGTCC+AGG 0.463381 6.2:-83492233 None:intergenic
TGGAGGACTTGCTTTAGCAT+TGG 0.464724 6.2:+83492187 MS.gene05476:CDS
ATGTATACTTTCTGAAATAC+AGG 0.465569 6.2:+83493376 MS.gene05476:CDS
GGCGGGGAAAGCATGGGAGA+TGG 0.469847 6.2:+83489749 MS.gene05476:CDS
GTGGGAAGAAATTGTAATCA+TGG 0.470172 6.2:+83492241 MS.gene05476:CDS
AGCAGGTTTAATGATGTTGT+CGG 0.472519 6.2:-83494653 None:intergenic
TATCGTATTCAACACAGTTA+AGG 0.478209 6.2:-83493030 None:intergenic
GCAGGTTTAATGATGTTGTC+GGG 0.480436 6.2:-83494652 None:intergenic
TCGTCGGTAACAACATTAGC+AGG 0.490901 6.2:-83494670 None:intergenic
GCGGGGAAAGCATGGGAGAT+GGG 0.493929 6.2:+83489750 MS.gene05476:CDS
GGCGGTGGGTATTCACAAAT+CGG 0.497636 6.2:+83489612 MS.gene05476:CDS
AAAACTTGTCTCTTCTCCGC+TGG 0.500088 6.2:-83494289 None:intergenic
AGAAGATGCACCAACAAAAG+TGG 0.500956 6.2:+83494741 MS.gene05476:CDS
AACGTGTGGCGGGGAAAGCA+TGG 0.504246 6.2:+83489742 MS.gene05476:CDS
TCAATGAAAGGTGGCGGTGG+CGG 0.508318 6.2:+83489594 MS.gene05476:CDS
TTTCCGCAAAGAGCTTAAGA+AGG 0.514375 6.2:+83494309 MS.gene05476:CDS
ATTGTATCTGGATATCGAAC+CGG 0.516050 6.2:+83492458 MS.gene05476:CDS
TGAAAGGTGGCGGTGGCGGT+GGG 0.518253 6.2:+83489598 MS.gene05476:CDS
CTTGGTGCTGCTGTATCTGT+TGG 0.524842 6.2:+83492524 MS.gene05476:CDS
TTGTAACATCTGGTTGGACT+AGG 0.528986 6.2:+83494920 MS.gene05476:CDS
TGCTGTATGAAGAAAGTCTC+CGG 0.530779 6.2:-83492477 None:intergenic
GCATTGTGCATTTATGGTCA+TGG 0.531427 6.2:+83493343 MS.gene05476:CDS
GGATTAGGGACTTTATCAGC+TGG 0.536839 6.2:+83492167 MS.gene05476:CDS
ACAAAATGTTTAGATATCCA+TGG 0.538110 6.2:+83493288 MS.gene05476:CDS
TTCAAGGAAACTGTGACGGA+AGG 0.540338 6.2:-83489553 None:intergenic
GGAATGCTGTCAAAATTGGC+TGG 0.542934 6.2:+83492209 MS.gene05476:CDS
TTCTTGTAAATGCAGAGCTG+TGG 0.543062 6.2:+83494473 MS.gene05476:CDS
CAAGTTCTTGTTGTTCAAGA+GGG 0.543303 6.2:-83494900 None:intergenic
GCTATCTGGGAGCCACCTCA+TGG 0.545299 6.2:+83493260 MS.gene05476:CDS
GTCGTCTTTGAGTTCAGTAT+AGG 0.545881 6.2:+83489909 MS.gene05476:CDS
TACTTCCCAACATCTGGAAA+CGG 0.547879 6.2:-83489858 None:intergenic
TACAAGCACAGAAGATGCAT+TGG 0.549163 6.2:+83493129 MS.gene05476:CDS
GTATCAAGCTTCTGATGATG+TGG 0.550964 6.2:+83493075 MS.gene05476:CDS
GGCGTAGCAACATCATTAGA+AGG 0.551490 6.2:+83492617 MS.gene05476:CDS
TGTGTGCATATATCCAATAT+GGG 0.552034 6.2:+83492553 MS.gene05476:CDS
CCATGATGCAATCTTCCCAC+AGG 0.557727 6.2:+83489514 None:intergenic
AAAACTATATCCAACAATGA+AGG 0.561439 6.2:+83492388 MS.gene05476:CDS
AAGAACTTGTAACATCTGGT+TGG 0.564340 6.2:+83494914 MS.gene05476:CDS
TTAACTGTGTTGAATACGAT+AGG 0.567618 6.2:+83493032 MS.gene05476:CDS
ACAAGTTCTTGTTGTTCAAG+AGG 0.570038 6.2:-83494901 None:intergenic
GAAACGAACACCACCGTCGT+TGG 0.570760 6.2:-83489677 None:intergenic
TCTTGTAAATGCAGAGCTGT+GGG 0.571185 6.2:+83494474 MS.gene05476:CDS
AAGATTATGTAGATCTTCAC+CGG 0.577973 6.2:-83492576 None:intergenic
CTGGAAGAATTTGAAACGTG+TGG 0.581704 6.2:+83489728 MS.gene05476:CDS
CTCATGTCAATGAAAGGTGG+CGG 0.587784 6.2:+83489588 MS.gene05476:CDS
ATGTCAATGAAAGGTGGCGG+TGG 0.588834 6.2:+83489591 MS.gene05476:CDS
AAGGTCTAAACAGAGGATTA+GGG 0.590676 6.2:+83492153 MS.gene05476:CDS
ATTGGCTGGACCTGGACAGT+GGG 0.592025 6.2:+83492223 MS.gene05476:CDS
ACGTGTGGCGGGGAAAGCAT+GGG 0.593925 6.2:+83489743 MS.gene05476:CDS
AATGTAGTCATCATCGTCGT+CGG 0.597630 6.2:-83489652 None:intergenic
AGATGTGAAGACAAAGATGC+TGG 0.600579 6.2:-83494709 None:intergenic
ACTACATTCGCCAACGACGG+TGG 0.601198 6.2:+83489667 MS.gene05476:CDS
ACTAAAGTTCTACGTGAACT+CGG 0.602116 6.2:+83494346 MS.gene05476:CDS
ATGACTACATTCGCCAACGA+CGG 0.612796 6.2:+83489664 MS.gene05476:CDS
AGAATTTGAAACGTGTGGCG+GGG 0.614282 6.2:+83489733 MS.gene05476:CDS
GAAGAATTTGAAACGTGTGG+CGG 0.621262 6.2:+83489731 MS.gene05476:CDS
TTTATGGTCATGGCTATGCA+TGG 0.621553 6.2:+83493353 MS.gene05476:CDS
ACCCAATTTGGGTACCCTGT+GGG 0.623692 6.2:-83489529 None:intergenic
GGCTAGGCTACAAAACCTTG+TGG 0.623864 6.2:+83494837 MS.gene05476:CDS
TTAGGGACTTTATCAGCTGG+AGG 0.624926 6.2:+83492170 MS.gene05476:CDS
TAACTGTGTTGAATACGATA+GGG 0.627098 6.2:+83493033 MS.gene05476:CDS
TGCATATATCCAATATGGGC+CGG 0.627717 6.2:+83492557 MS.gene05476:CDS
AATTGGCTGGACCTGGACAG+TGG 0.630767 6.2:+83492222 MS.gene05476:CDS
TTAAAGTAAGTGGAGCACTC+AGG 0.643732 6.2:+83493321 MS.gene05476:CDS
TCTGATGATGTGGTTTACAG+CGG 0.646018 6.2:+83493085 MS.gene05476:CDS
GCAGGAGCAACTCTTAGCAA+AGG 0.647124 6.2:+83492134 MS.gene05476:intron
AGATGGGTGTGTCTGATCCA+AGG 0.649272 6.2:+83489766 MS.gene05476:CDS
AAACTCATGTCAATGAAAGG+TGG 0.655476 6.2:+83489585 MS.gene05476:CDS
AACCCAATTTGGGTACCCTG+TGG 0.656487 6.2:-83489530 None:intergenic
ATTCTTCAAAAGAATCCACA+AGG 0.658164 6.2:-83494852 None:intergenic
CATGATGCAATCTTCCCACA+GGG 0.660663 6.2:+83489515 None:intergenic
AATAGGTGATCAAGAACACA+CGG 0.669501 6.2:-83492427 None:intergenic
CTTAGCAAAGGTCTAAACAG+AGG 0.672271 6.2:+83492146 MS.gene05476:CDS
CCTGTGGGAAGATTGCATCA+TGG 0.709443 6.2:-83489514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATAATATATGTAG+GGG + chr6.2:83490230-83490249 MS.gene05476:intron 10.0%
!! ATGAAGAAATAAATAAATAA+AGG + chr6.2:83491270-83491289 MS.gene05476:intron 10.0%
!! GAATATTATATAATATATGT+AGG + chr6.2:83490228-83490247 MS.gene05476:intron 10.0%
!! GTAAATAAATAAATAAGTAA+AGG + chr6.2:83491312-83491331 MS.gene05476:intron 10.0%
!! TATTATTTGTTTATTTAAAG+TGG + chr6.2:83490637-83490656 MS.gene05476:intron 10.0%
!! TTACTTATTTATTTATTTAC+TGG - chr6.2:83491312-83491331 None:intergenic 10.0%
!! TTTGAAAACTAAAAAATAAT+TGG - chr6.2:83491069-83491088 None:intergenic 10.0%
!!! TATTTTATCAAATTATTACA+CGG + chr6.2:83490044-83490063 MS.gene05476:intron 10.0%
!!! TATTTTATTTTTGCTTATAT+AGG + chr6.2:83490543-83490562 MS.gene05476:intron 10.0%
!! AAAAATTATGTTAAAGTAAG+TGG + chr6.2:83493311-83493330 MS.gene05476:CDS 15.0%
!! AAATTAAACAACATTAACAT+AGG - chr6.2:83491428-83491447 None:intergenic 15.0%
!! AAATTTAAATACTAATCAAG+TGG - chr6.2:83494189-83494208 None:intergenic 15.0%
!! AATGCATCTAATTTAAATTA+GGG - chr6.2:83490506-83490525 None:intergenic 15.0%
!! ATTAAAATTTACAACATTTG+AGG + chr6.2:83492672-83492691 MS.gene05476:intron 15.0%
!! CTAAAAATAGAAACAAATTT+CGG - chr6.2:83490853-83490872 None:intergenic 15.0%
!! TACTTATTATGAAGTATATA+CGG - chr6.2:83493902-83493921 None:intergenic 15.0%
!! TTACTACAGTAAAAAAAATT+TGG - chr6.2:83490799-83490818 None:intergenic 15.0%
!! TTTCACTTATAAACAATAAT+TGG + chr6.2:83492096-83492115 MS.gene05476:intron 15.0%
!!! ATTATTAGTTAGTTTAATAG+TGG - chr6.2:83490969-83490988 None:intergenic 15.0%
!!! ATTTTATCAAATTATTACAC+GGG + chr6.2:83490045-83490064 MS.gene05476:intron 15.0%
!!! TTATTTTATTAGGTTTACTT+AGG + chr6.2:83492007-83492026 MS.gene05476:intron 15.0%
!! AAACTAAATGTTATAGTAGA+TGG - chr6.2:83492941-83492960 None:intergenic 20.0%
!! AATAAGTAAGAAAAGTCTAT+TGG - chr6.2:83492649-83492668 None:intergenic 20.0%
!! ACCAATTGAATACTATTAAA+TGG - chr6.2:83491560-83491579 None:intergenic 20.0%
!! ATAAAATCATTCCAAGTTTA+AGG - chr6.2:83491861-83491880 None:intergenic 20.0%
!! ATAAGTAAGAAAAGTCTATT+GGG - chr6.2:83492648-83492667 None:intergenic 20.0%
!! ATACATGTATCTTTACTATT+TGG + chr6.2:83494058-83494077 MS.gene05476:intron 20.0%
!! ATTTGTACTTTACAATCAAT+AGG - chr6.2:83493660-83493679 None:intergenic 20.0%
!! CAATGCATCTAATTTAAATT+AGG - chr6.2:83490507-83490526 None:intergenic 20.0%
!! CAATTATATCATTATGTATG+TGG + chr6.2:83493855-83493874 MS.gene05476:intron 20.0%
!! GTTTAATTGTTTCAAATCTA+AGG + chr6.2:83494945-83494964 MS.gene05476:CDS 20.0%
!! TAGATGGTTATTACAAATTA+AGG - chr6.2:83492925-83492944 None:intergenic 20.0%
!! TCCATTTAATAGTATTCAAT+TGG + chr6.2:83491556-83491575 MS.gene05476:intron 20.0%
!!! AATCATATATGTGTTTGTTA+CGG - chr6.2:83490010-83490029 None:intergenic 20.0%
!!! ACTTTAACATAATTTTTCCA+TGG - chr6.2:83493308-83493327 None:intergenic 20.0%
!!! ATAACTTAAAGTTTCTTTTC+AGG + chr6.2:83492992-83493011 MS.gene05476:intron 20.0%
!!! CAAACTGGTTTTATTTTATT+AGG + chr6.2:83491997-83492016 MS.gene05476:intron 20.0%
!!! TCTACTATAACATTTAGTTT+TGG + chr6.2:83492941-83492960 MS.gene05476:intron 20.0%
!!! TTAGTTTTCAAAATTACAAG+TGG + chr6.2:83491077-83491096 MS.gene05476:intron 20.0%
! AAAACTATATCCAACAATGA+AGG + chr6.2:83492388-83492407 MS.gene05476:CDS 25.0%
! AATAAGCTGAAAATAGCTTA+TGG - chr6.2:83492769-83492788 None:intergenic 25.0%
! ACAAAATGTTTAGATATCCA+TGG + chr6.2:83493288-83493307 MS.gene05476:CDS 25.0%
! ACAATGCATTATTATATGCA+GGG + chr6.2:83490703-83490722 MS.gene05476:intron 25.0%
! ACAGTAAAAAAAATTTGGAC+AGG - chr6.2:83490794-83490813 None:intergenic 25.0%
! AGATACAATAACGTAACAAT+AGG - chr6.2:83492447-83492466 None:intergenic 25.0%
! ATCAAATTCAAGGAGATATA+TGG + chr6.2:83493750-83493769 MS.gene05476:intron 25.0%
! ATTGCGAATGTTTCTTTATT+TGG - chr6.2:83490593-83490612 None:intergenic 25.0%
! CTGATAACTTAAGTAGAAAA+AGG - chr6.2:83493160-83493179 None:intergenic 25.0%
! GTATCCTTAAAAATGTCTTA+AGG - chr6.2:83490352-83490371 None:intergenic 25.0%
! TAATAGTATTCAATTGGTGA+TGG + chr6.2:83491562-83491581 MS.gene05476:intron 25.0%
! TATTGTTACGTTATTGTATC+TGG + chr6.2:83492446-83492465 MS.gene05476:CDS 25.0%
! TTAATTAGCAAATTTGACCA+TGG + chr6.2:83491381-83491400 MS.gene05476:intron 25.0%
! TTATATAATATATGTAGGGG+CGG + chr6.2:83490233-83490252 MS.gene05476:intron 25.0%
!! AAACTTGATGAAAGGTTTTT+AGG - chr6.2:83492040-83492059 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAG+AGG + chr6.2:83492898-83492917 MS.gene05476:intron 25.0%
!! GTTTTTCCTATAAAGCAAAA+CGG - chr6.2:83493628-83493647 None:intergenic 25.0%
!!! ATCACTTTTGATTGAATTTG+TGG + chr6.2:83494816-83494835 MS.gene05476:CDS 25.0%
!!! ATGTATACTTTCTGAAATAC+AGG + chr6.2:83493376-83493395 MS.gene05476:CDS 25.0%
!!! GTTTAATTTGACCTTAAACT+TGG + chr6.2:83491847-83491866 MS.gene05476:intron 25.0%
!!! TGAGTTTTTCCTTTTTTTCA+AGG - chr6.2:83489572-83489591 None:intergenic 25.0%
!!! TTATGTCTAGATAGTTTGTT+TGG - chr6.2:83490938-83490957 None:intergenic 25.0%
AAGATTATGTAGATCTTCAC+CGG - chr6.2:83492579-83492598 None:intergenic 30.0%
ACAATGAAGGCTTATGAATA+TGG + chr6.2:83492401-83492420 MS.gene05476:CDS 30.0%
ACCTTATAAGGTGAATAAGT+GGG - chr6.2:83490751-83490770 None:intergenic 30.0%
ACTTTACAATCAATAGGAAC+TGG - chr6.2:83493654-83493673 None:intergenic 30.0%
AGCATACTATCAGAAAAACA+AGG - chr6.2:83492336-83492355 None:intergenic 30.0%
AGGTATAAGCTAAGGAAAAA+AGG - chr6.2:83492316-83492335 None:intergenic 30.0%
AGTTAGAGTTCCAAAAAGTT+GGG + chr6.2:83494612-83494631 MS.gene05476:CDS 30.0%
ATGTGTGCATATATCCAATA+TGG + chr6.2:83492552-83492571 MS.gene05476:CDS 30.0%
ATTCTTCAAAAGAATCCACA+AGG - chr6.2:83494855-83494874 None:intergenic 30.0%
CAATGCATTATTATATGCAG+GGG + chr6.2:83490704-83490723 MS.gene05476:intron 30.0%
CAGATATATATTAGCGCTAT+AGG - chr6.2:83494143-83494162 None:intergenic 30.0%
CGGTAACAAAGTTAAAAAGA+TGG + chr6.2:83494366-83494385 MS.gene05476:CDS 30.0%
CTCCTTGAATTTGATATGAA+GGG - chr6.2:83493745-83493764 None:intergenic 30.0%
CTTGTTGCAAAAAATTTCAC+AGG + chr6.2:83492596-83492615 MS.gene05476:CDS 30.0%
CTTTACAATCAATAGGAACT+GGG - chr6.2:83493653-83493672 None:intergenic 30.0%
GAAAAACAAGGTATAAGCTA+AGG - chr6.2:83492324-83492343 None:intergenic 30.0%
GAAAAACTCATGTCAATGAA+AGG + chr6.2:83489582-83489601 MS.gene05476:CDS 30.0%
GACAATGCATTATTATATGC+AGG + chr6.2:83490702-83490721 MS.gene05476:intron 30.0%
GTAAAAAAAATTTGGACAGG+TGG - chr6.2:83490791-83490810 None:intergenic 30.0%
GTTAAAAAGATGGAGAAACT+AGG + chr6.2:83494376-83494395 MS.gene05476:CDS 30.0%
TAACTGTGTTGAATACGATA+GGG + chr6.2:83493033-83493052 MS.gene05476:CDS 30.0%
TAAGTAACTAGAATACTGCT+AGG + chr6.2:83493916-83493935 MS.gene05476:intron 30.0%
TAATCCAATTGTGAGAATGA+TGG + chr6.2:83491185-83491204 MS.gene05476:intron 30.0%
TAATGAACTAGCACTTTCAT+AGG - chr6.2:83494779-83494798 None:intergenic 30.0%
TAGAAACAAATTTCGGTTCA+TGG - chr6.2:83490846-83490865 None:intergenic 30.0%
TAGTAAACGTGTATTTGCAT+AGG - chr6.2:83494245-83494264 None:intergenic 30.0%
TATCGTATTCAACACAGTTA+AGG - chr6.2:83493033-83493052 None:intergenic 30.0%
TATTCATAAGCCTTCATTGT+TGG - chr6.2:83492401-83492420 None:intergenic 30.0%
TCACAGTTTCCTTGAAAAAA+AGG + chr6.2:83489560-83489579 MS.gene05476:CDS 30.0%
TCCTTGAATTTGATATGAAG+GGG - chr6.2:83493744-83493763 None:intergenic 30.0%
TCTCCTTGAATTTGATATGA+AGG - chr6.2:83493746-83493765 None:intergenic 30.0%
TGAAAAACACAGTCAATCAA+TGG + chr6.2:83490995-83491014 MS.gene05476:intron 30.0%
TGTGTGCATATATCCAATAT+GGG + chr6.2:83492553-83492572 MS.gene05476:CDS 30.0%
TTAACTGTGTTGAATACGAT+AGG + chr6.2:83493032-83493051 MS.gene05476:CDS 30.0%
TTACAAATTAAGGTCCTCTT+TGG - chr6.2:83492915-83492934 None:intergenic 30.0%
TTTCTTCATCCATTTGTAAG+AGG - chr6.2:83494540-83494559 None:intergenic 30.0%
! AAACCTCCTTTTTGTGAAAT+AGG + chr6.2:83494264-83494283 MS.gene05476:intron 30.0%
! AGATTTTCTTCCCAACTTTT+TGG - chr6.2:83494625-83494644 None:intergenic 30.0%
! AGTGCCTTAAGACATTTTTA+AGG + chr6.2:83490345-83490364 MS.gene05476:intron 30.0%
! ATCTAACCGTTTTGCTTTAT+AGG + chr6.2:83493619-83493638 MS.gene05476:intron 30.0%
! CAAACTCGATTTGTAAATTG+AGG - chr6.2:83491823-83491842 None:intergenic 30.0%
! CTTTCATCAAGTTTTCCATT+GGG + chr6.2:83492046-83492065 MS.gene05476:intron 30.0%
! TAGTATGCTATGTGATTTGT+AGG + chr6.2:83492347-83492366 MS.gene05476:intron 30.0%
! TGATACGTAAGAATTTTCGA+TGG - chr6.2:83493061-83493080 None:intergenic 30.0%
! TTATTCCATACATTTGAGAC+CGG - chr6.2:83490163-83490182 None:intergenic 30.0%
! TTGTGATAGTAGTTTGTAAC+AGG + chr6.2:83493827-83493846 MS.gene05476:intron 30.0%
! TTTCCTAAACATGTTTTCGT+CGG - chr6.2:83494689-83494708 None:intergenic 30.0%
!! AATAGTGTGAGTTAGTTTGT+TGG - chr6.2:83490906-83490925 None:intergenic 30.0%
!! ATCACAACTTTTGAGAATGA+TGG + chr6.2:83491156-83491175 MS.gene05476:intron 30.0%
!! CTGATTATTCTAGAATCACT+TGG + chr6.2:83491460-83491479 MS.gene05476:intron 30.0%
!! GTGGATTCTTTTGAAGAATT+AGG + chr6.2:83494856-83494875 MS.gene05476:CDS 30.0%
!! TGGATATAGTTTTGCATATG+TGG - chr6.2:83492381-83492400 None:intergenic 30.0%
!! TTTGATTCTTCCACTTTTGT+TGG - chr6.2:83494754-83494773 None:intergenic 30.0%
!! TTTGATTTCTAAAGCTCAGT+TGG + chr6.2:83490676-83490695 MS.gene05476:intron 30.0%
!! TTTTGATTGAATTTGTGGCT+AGG + chr6.2:83494821-83494840 MS.gene05476:CDS 30.0%
!!! TTTTTTCAAGGAAACTGTGA+CGG - chr6.2:83489560-83489579 None:intergenic 30.0%
AAACGTGTATTTGCATAGGT+TGG - chr6.2:83494241-83494260 None:intergenic 35.0%
AAACTCATGTCAATGAAAGG+TGG + chr6.2:83489585-83489604 MS.gene05476:CDS 35.0%
AAAGGTCTAAACAGAGGATT+AGG + chr6.2:83492152-83492171 MS.gene05476:CDS 35.0%
AAATGCTAATAAGTGCCCTA+AGG - chr6.2:83490483-83490502 None:intergenic 35.0%
AAGAACTTGTAACATCTGGT+TGG + chr6.2:83494914-83494933 MS.gene05476:CDS 35.0%
AAGGTCTAAACAGAGGATTA+GGG + chr6.2:83492153-83492172 MS.gene05476:CDS 35.0%
AATAGGTGATCAAGAACACA+CGG - chr6.2:83492430-83492449 None:intergenic 35.0%
AATGCTAATAAGTGCCCTAA+GGG - chr6.2:83490482-83490501 None:intergenic 35.0%
ACACTCAATGCATCGAAAAT+TGG - chr6.2:83490415-83490434 None:intergenic 35.0%
ACCACAGATTGCAGAAAATA+GGG + chr6.2:83493964-83493983 MS.gene05476:intron 35.0%
ACTAAAGTTCTACGTGAACT+CGG + chr6.2:83494346-83494365 MS.gene05476:CDS 35.0%
AGAATCTTCACCTTACAAGT+TGG + chr6.2:83491779-83491798 MS.gene05476:intron 35.0%
AGCAGGTTTAATGATGTTGT+CGG - chr6.2:83494656-83494675 None:intergenic 35.0%
AGGTGAGAAAGCAAAGTTTA+AGG + chr6.2:83494876-83494895 MS.gene05476:CDS 35.0%
AGTGGGAAGTAGAAAATTTG+TGG + chr6.2:83491120-83491139 MS.gene05476:intron 35.0%
ATACTAATCAAGTGGTGCAA+AGG - chr6.2:83494181-83494200 None:intergenic 35.0%
ATCAAATTATTACACGGGTG+AGG + chr6.2:83490050-83490069 MS.gene05476:intron 35.0%
ATCACCATCATTCTCACAAT+TGG - chr6.2:83491192-83491211 None:intergenic 35.0%
ATGGTTAGCATCTTCATTGT+AGG + chr6.2:83492260-83492279 MS.gene05476:CDS 35.0%
ATTAGCAAATTTGACCATGG+TGG + chr6.2:83491384-83491403 MS.gene05476:intron 35.0%
ATTGGGAATGCTGTCAAAAT+TGG + chr6.2:83492205-83492224 MS.gene05476:CDS 35.0%
ATTGTATCTGGATATCGAAC+CGG + chr6.2:83492458-83492477 MS.gene05476:CDS 35.0%
CAACAAGAACTTGTAACATC+TGG + chr6.2:83494910-83494929 MS.gene05476:CDS 35.0%
CAAGAATCAAACGTCATTTC+TGG - chr6.2:83493557-83493576 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG - chr6.2:83490752-83490771 None:intergenic 35.0%
CACTGTTGTAGTGTCTTAAT+CGG + chr6.2:83490089-83490108 MS.gene05476:intron 35.0%
CAGAAATGACGTTTGATTCT+TGG + chr6.2:83493555-83493574 MS.gene05476:intron 35.0%
CAGTTAGAGTTCCAAAAAGT+TGG + chr6.2:83494611-83494630 MS.gene05476:CDS 35.0%
CATAGAAAATGTTGCTACAC+AGG - chr6.2:83493404-83493423 None:intergenic 35.0%
CCAATGGAAAACTTGATGAA+AGG - chr6.2:83492048-83492067 None:intergenic 35.0%
CCTTATAAGGTGAATAAGTG+GGG - chr6.2:83490750-83490769 None:intergenic 35.0%
CCTTGAATTTGATATGAAGG+GGG - chr6.2:83493743-83493762 None:intergenic 35.0%
CTACTATCACAATCCTATAC+AGG - chr6.2:83493819-83493838 None:intergenic 35.0%
GAAAATATGCTCTTCAACCA+TGG + chr6.2:83491485-83491504 MS.gene05476:intron 35.0%
GAAGTTCACACTTTACAAAC+TGG + chr6.2:83491982-83492001 MS.gene05476:intron 35.0%
GATCTATTCAAGCCATATGT+CGG - chr6.2:83491925-83491944 None:intergenic 35.0%
GCTTAGTACTAAATCACGTA+TGG + chr6.2:83494082-83494101 MS.gene05476:intron 35.0%
GGATGAAGAAAGACATTTCT+TGG + chr6.2:83494549-83494568 MS.gene05476:CDS 35.0%
GTGGGAAGAAATTGTAATCA+TGG + chr6.2:83492241-83492260 MS.gene05476:CDS 35.0%
TAGTACTAAATCACGTATGG+CGG + chr6.2:83494085-83494104 MS.gene05476:intron 35.0%
TGAGAAACATTCTCGTTTCT+TGG - chr6.2:83494514-83494533 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG - chr6.2:83490763-83490782 None:intergenic 35.0%
TTACCGACGAAAACATGTTT+AGG + chr6.2:83494683-83494702 MS.gene05476:CDS 35.0%
TTACCTTCTTAAGCTCTTTG+CGG - chr6.2:83494315-83494334 None:intergenic 35.0%
TTAGCAAATTTGACCATGGT+GGG + chr6.2:83491385-83491404 MS.gene05476:intron 35.0%
TTCTCAAGACCTCTTACAAA+TGG + chr6.2:83494528-83494547 MS.gene05476:CDS 35.0%
TTGCTTATATAGGAGACTAG+AGG + chr6.2:83490553-83490572 MS.gene05476:intron 35.0%
! AACATTTTGTAACGACCATG+AGG - chr6.2:83493278-83493297 None:intergenic 35.0%
! AGACATTCGATCAGAAGTAT+CGG - chr6.2:83489971-83489990 None:intergenic 35.0%
! AGATTTTTGCTCATTGCTCT+TGG + chr6.2:83492506-83492525 MS.gene05476:CDS 35.0%
! AGCAAAACGGTTAGATTTTG+TGG - chr6.2:83493615-83493634 None:intergenic 35.0%
! CCTTTCATCAAGTTTTCCAT+TGG + chr6.2:83492045-83492064 MS.gene05476:intron 35.0%
! TTTGTGTTTTCAGCGAAGAT+GGG + chr6.2:83489792-83489811 MS.gene05476:CDS 35.0%
!! ACAAGTTCTTGTTGTTCAAG+AGG - chr6.2:83494904-83494923 None:intergenic 35.0%
!! ATTTCTAAAGCTCAGTTGGT+AGG + chr6.2:83490680-83490699 MS.gene05476:intron 35.0%
!! CAAGTTCTTGTTGTTCAAGA+GGG - chr6.2:83494903-83494922 None:intergenic 35.0%
!! GAAGATGAGTTTTGCTATCT+GGG + chr6.2:83493247-83493266 MS.gene05476:intron 35.0%
!! TCGTATTGACTTACTTCATC+CGG + chr6.2:83490141-83490160 MS.gene05476:intron 35.0%
!!! GATGAAAGGTTTTTAGGTTC+TGG - chr6.2:83492034-83492053 None:intergenic 35.0%
AAACAACCGTTTCCAGATGT+TGG + chr6.2:83489852-83489871 MS.gene05476:CDS 40.0%
AACAACCGTTTCCAGATGTT+GGG + chr6.2:83489853-83489872 MS.gene05476:CDS 40.0%
AATGTAGTCATCATCGTCGT+CGG - chr6.2:83489655-83489674 None:intergenic 40.0%
ACGTAGAACTTTAGTCGCTT+CGG - chr6.2:83494341-83494360 None:intergenic 40.0%
AGAAGATGCACCAACAAAAG+TGG + chr6.2:83494741-83494760 MS.gene05476:CDS 40.0%
AGACACTACAACAGTGTCAT+TGG - chr6.2:83490085-83490104 None:intergenic 40.0%
AGATGTGAAGACAAAGATGC+TGG - chr6.2:83494712-83494731 None:intergenic 40.0%
ATAAGTCGTTCTCGTAAGCT+CGG - chr6.2:83492739-83492758 None:intergenic 40.0%
ATTATTATATGCAGGGGCTG+GGG + chr6.2:83490710-83490729 MS.gene05476:intron 40.0%
CATATGACAAGTCCGACATA+TGG + chr6.2:83491910-83491929 MS.gene05476:intron 40.0%
CATTATTATATGCAGGGGCT+GGG + chr6.2:83490709-83490728 MS.gene05476:intron 40.0%
CCACAGATTGCAGAAAATAG+GGG + chr6.2:83493965-83493984 MS.gene05476:intron 40.0%
CCCCACTTATTCACCTTATA+AGG + chr6.2:83490747-83490766 MS.gene05476:intron 40.0%
CCCCCTTCATATCAAATTCA+AGG + chr6.2:83493740-83493759 MS.gene05476:intron 40.0%
CGCTTTACAACCAACTTGTA+AGG - chr6.2:83491792-83491811 None:intergenic 40.0%
CGTGTCATAGTATCAAACCT+GGG - chr6.2:83491514-83491533 None:intergenic 40.0%
CTGGAGCCTATTTCACAAAA+AGG - chr6.2:83494273-83494292 None:intergenic 40.0%
CTTAGCAAAGGTCTAAACAG+AGG + chr6.2:83492146-83492165 MS.gene05476:CDS 40.0%
GACCACAGATTGCAGAAAAT+AGG + chr6.2:83493963-83493982 MS.gene05476:intron 40.0%
GAGCCTATTTCACAAAAAGG+AGG - chr6.2:83494270-83494289 None:intergenic 40.0%
GCAGGTTTAATGATGTTGTC+GGG - chr6.2:83494655-83494674 None:intergenic 40.0%
GCATTGTGCATTTATGGTCA+TGG + chr6.2:83493343-83493362 MS.gene05476:CDS 40.0%
GCTGAAAACACAAACTTCCT+TGG - chr6.2:83489786-83489805 None:intergenic 40.0%
GCTTAGTGCTAAATCACGTA+TGG + chr6.2:83494026-83494045 MS.gene05476:intron 40.0%
GTAACTAGAATACTGCTAGG+TGG + chr6.2:83493919-83493938 MS.gene05476:intron 40.0%
GTGAATAACTGTAGTGTCAG+AGG - chr6.2:83490267-83490286 None:intergenic 40.0%
GTGCTAAACTAGAGATGTTG+CGG + chr6.2:83493772-83493791 MS.gene05476:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr6.2:83490765-83490784 MS.gene05476:intron 40.0%
TACAAGCACAGAAGATGCAT+TGG + chr6.2:83493129-83493148 MS.gene05476:CDS 40.0%
TACTTCCCAACATCTGGAAA+CGG - chr6.2:83489861-83489880 None:intergenic 40.0%
TAGTGCTAAATCACGTATGG+CGG + chr6.2:83494029-83494048 MS.gene05476:intron 40.0%
TCTTGTAAATGCAGAGCTGT+GGG + chr6.2:83494474-83494493 MS.gene05476:CDS 40.0%
TGCATATATCCAATATGGGC+CGG + chr6.2:83492557-83492576 MS.gene05476:CDS 40.0%
TGCTAAACTAGAGATGTTGC+GGG + chr6.2:83493773-83493792 MS.gene05476:intron 40.0%
TGCTGTATGAAGAAAGTCTC+CGG - chr6.2:83492480-83492499 None:intergenic 40.0%
TGGTCACAATATATCTGTGC+AGG + chr6.2:83492116-83492135 MS.gene05476:intron 40.0%
TTCATCCGGTCTCAAATGTA+TGG + chr6.2:83490155-83490174 MS.gene05476:intron 40.0%
TTCTTGTAAATGCAGAGCTG+TGG + chr6.2:83494473-83494492 MS.gene05476:CDS 40.0%
TTGTAACATCTGGTTGGACT+AGG + chr6.2:83494920-83494939 MS.gene05476:CDS 40.0%
TTTATGGTCATGGCTATGCA+TGG + chr6.2:83493353-83493372 MS.gene05476:CDS 40.0%
TTTCCGCAAAGAGCTTAAGA+AGG + chr6.2:83494309-83494328 MS.gene05476:CDS 40.0%
! AACAATTTTCTGTCCCACCA+TGG - chr6.2:83491401-83491420 None:intergenic 40.0%
! AAGAATTTGAAACGTGTGGC+GGG + chr6.2:83489732-83489751 MS.gene05476:CDS 40.0%
! ACAACATTTGAGGCCTGTTT+GGG + chr6.2:83492682-83492701 MS.gene05476:intron 40.0%
! ACTCAGGCATTGTGCATTTA+TGG + chr6.2:83493337-83493356 MS.gene05476:CDS 40.0%
! ATTTTGTAACGACCATGAGG+TGG - chr6.2:83493275-83493294 None:intergenic 40.0%
! CGTTTCGAGGATTTTCAGAT+GGG + chr6.2:83489694-83489713 MS.gene05476:CDS 40.0%
! CTGGAAGAATTTGAAACGTG+TGG + chr6.2:83489728-83489747 MS.gene05476:CDS 40.0%
! GAAGAATTTGAAACGTGTGG+CGG + chr6.2:83489731-83489750 MS.gene05476:CDS 40.0%
! GCGTTTGTGTGTTGTTGATT+CGG + chr6.2:83493225-83493244 MS.gene05476:intron 40.0%
! GTATCAAGCTTCTGATGATG+TGG + chr6.2:83493075-83493094 MS.gene05476:CDS 40.0%
! GTCGTCTTTGAGTTCAGTAT+AGG + chr6.2:83489909-83489928 MS.gene05476:CDS 40.0%
! GTTTGTGTTTTCAGCGAAGA+TGG + chr6.2:83489791-83489810 MS.gene05476:CDS 40.0%
! TACAACATTTGAGGCCTGTT+TGG + chr6.2:83492681-83492700 MS.gene05476:intron 40.0%
! TACTTGTCTTGTTGACCCAA+TGG - chr6.2:83492064-83492083 None:intergenic 40.0%
! TCGTTTCGAGGATTTTCAGA+TGG + chr6.2:83489693-83489712 MS.gene05476:CDS 40.0%
! TCTGATGATGTGGTTTACAG+CGG + chr6.2:83493085-83493104 MS.gene05476:CDS 40.0%
! TGTTTGTTACGGTGTCAAAC+CGG - chr6.2:83489999-83490018 None:intergenic 40.0%
! TTAAAGTAAGTGGAGCACTC+AGG + chr6.2:83493321-83493340 MS.gene05476:CDS 40.0%
! TTTTGTGAAATAGGCTCCAG+CGG + chr6.2:83494273-83494292 MS.gene05476:intron 40.0%
!! AGTTCTTAAAGAGTGCCCTT+AGG + chr6.2:83490464-83490483 MS.gene05476:intron 40.0%
!! ATGTTGGGAAGTACTCTGTT+TGG + chr6.2:83489868-83489887 MS.gene05476:CDS 40.0%
!! ATTGGTGATGGTGAAATCAC+AGG + chr6.2:83491574-83491593 MS.gene05476:intron 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG - chr6.2:83492804-83492823 None:intergenic 40.0%
!! GGAAGATGAGTTTTGCTATC+TGG + chr6.2:83493246-83493265 MS.gene05476:intron 40.0%
!! GTTCTTAAAGAGTGCCCTTA+GGG + chr6.2:83490465-83490484 MS.gene05476:intron 40.0%
!! TGTTGGGAAGTACTCTGTTT+GGG + chr6.2:83489869-83489888 MS.gene05476:CDS 40.0%
AAAACTTGTCTCTTCTCCGC+TGG - chr6.2:83494292-83494311 None:intergenic 45.0%
AAGCTATCCTGGTGAGCTTA+TGG - chr6.2:83492793-83492812 None:intergenic 45.0%
AATGCAGAGCTGTGGGAAAT+CGG + chr6.2:83494481-83494500 MS.gene05476:CDS 45.0%
ACAAATCGGCATCCCTTTAC+CGG + chr6.2:83489626-83489645 MS.gene05476:CDS 45.0%
ACAATTTCTTCCCACTGTCC+AGG - chr6.2:83492236-83492255 None:intergenic 45.0%
ACGACACAAACACGGTTACA+TGG - chr6.2:83490118-83490137 None:intergenic 45.0%
ATGACTACATTCGCCAACGA+CGG + chr6.2:83489664-83489683 MS.gene05476:CDS 45.0%
ATGTCGGACTTGTCATATGC+TGG - chr6.2:83491909-83491928 None:intergenic 45.0%
ATTTGATATGAAGGGGGCTG+AGG - chr6.2:83493737-83493756 None:intergenic 45.0%
CTCATGTCAATGAAAGGTGG+CGG + chr6.2:83489588-83489607 MS.gene05476:CDS 45.0%
CTGATCGAATGTCTGTGTTC+CGG + chr6.2:83489977-83489996 MS.gene05476:intron 45.0%
CTTATTGCCATAAGCTCACC+AGG + chr6.2:83492783-83492802 MS.gene05476:intron 45.0%
GCATTATTATATGCAGGGGC+TGG + chr6.2:83490708-83490727 MS.gene05476:intron 45.0%
GCGTGTCATAGTATCAAACC+TGG - chr6.2:83491515-83491534 None:intergenic 45.0%
GGAATGCTGTCAAAATTGGC+TGG + chr6.2:83492209-83492228 MS.gene05476:CDS 45.0%
GGATTAGGGACTTTATCAGC+TGG + chr6.2:83492167-83492186 MS.gene05476:CDS 45.0%
GGCGTAGCAACATCATTAGA+AGG + chr6.2:83492617-83492636 MS.gene05476:CDS 45.0%
GGGCTGAGGATAACAAAAAG+GGG - chr6.2:83493723-83493742 None:intergenic 45.0%
GGGGCTGAGGATAACAAAAA+GGG - chr6.2:83493724-83493743 None:intergenic 45.0%
TACGAAGCACGACACAAACA+CGG - chr6.2:83490126-83490145 None:intergenic 45.0%
TCCATAGTCAACGCAGAACA+TGG - chr6.2:83491729-83491748 None:intergenic 45.0%
TCGTCGGTAACAACATTAGC+AGG - chr6.2:83494673-83494692 None:intergenic 45.0%
TGACGGAAGGAACCCAATTT+GGG - chr6.2:83489543-83489562 None:intergenic 45.0%
TTAGGGACTTTATCAGCTGG+AGG + chr6.2:83492170-83492189 MS.gene05476:CDS 45.0%
! ACAGAGTACTTCCCAACATC+TGG - chr6.2:83489867-83489886 None:intergenic 45.0%
! ACGCCTTTAATCTGAAGCGT+CGG + chr6.2:83493508-83493527 MS.gene05476:intron 45.0%
! AGAATTTGAAACGTGTGGCG+GGG + chr6.2:83489733-83489752 MS.gene05476:CDS 45.0%
! AGGATTTTCAGATGGGATCG+TGG + chr6.2:83489701-83489720 MS.gene05476:CDS 45.0%
! CACTACAACAGTGTCATTGG+TGG - chr6.2:83490082-83490101 None:intergenic 45.0%
! CCCCTATTTTCTGCAATCTG+TGG - chr6.2:83493968-83493987 None:intergenic 45.0%
! CTTCAGATTAAAGGCGTGTC+TGG - chr6.2:83493505-83493524 None:intergenic 45.0%
! GGAGGACTTGCTTTAGCATT+GGG + chr6.2:83492188-83492207 MS.gene05476:CDS 45.0%
! GTACCGACGCTTCAGATTAA+AGG - chr6.2:83493514-83493533 None:intergenic 45.0%
! TGGAGGACTTGCTTTAGCAT+TGG + chr6.2:83492187-83492206 MS.gene05476:CDS 45.0%
! TTCAAGGAAACTGTGACGGA+AGG - chr6.2:83489556-83489575 None:intergenic 45.0%
!! GTTTTCAGCGAAGATGGGTT+TGG + chr6.2:83489797-83489816 MS.gene05476:CDS 45.0%
!! TCCATGTTCTGCGTTGACTA+TGG + chr6.2:83491725-83491744 MS.gene05476:intron 45.0%
!! TGCGGGAGTCTTAGTCTTAA+TGG + chr6.2:83493790-83493809 MS.gene05476:intron 45.0%
!! AATATTATATAATATATGTA+GGG + chr6.2:83490229-83490248 MS.gene05476:intron 5.0%
!! GTAAATAAATAAATAAATAA+AGG + chr6.2:83491354-83491373 MS.gene05476:intron 5.0%
!! TTATTTATTTATTTATTTAC+TGG - chr6.2:83491354-83491373 None:intergenic 5.0%
!!! ATTTTTTTTATATAAAAAAG+TGG + chr6.2:83491102-83491121 MS.gene05476:intron 5.0%
!!! TTTTTTTTATATAAAAAAGT+GGG + chr6.2:83491103-83491122 MS.gene05476:intron 5.0%
AACCCAATTTGGGTACCCTG+TGG - chr6.2:83489533-83489552 None:intergenic 50.0%
AATTTGGACAGGTGGCCTAG+TGG - chr6.2:83490783-83490802 None:intergenic 50.0%
ACCCAATTTGGGTACCCTGT+GGG - chr6.2:83489532-83489551 None:intergenic 50.0%
AGATCTTCACCGGCCCATAT+TGG - chr6.2:83492569-83492588 None:intergenic 50.0%
AGATGGGTGTGTCTGATCCA+AGG + chr6.2:83489766-83489785 MS.gene05476:CDS 50.0%
AGCTGTGGGAAATCGGTAAC+AGG + chr6.2:83494488-83494507 MS.gene05476:CDS 50.0%
CTGTCAAAATTGGCTGGACC+TGG + chr6.2:83492215-83492234 MS.gene05476:CDS 50.0%
GCAGGAGCAACTCTTAGCAA+AGG + chr6.2:83492134-83492153 MS.gene05476:intron 50.0%
GCTATGCTGCAGTCGCTATT+TGG + chr6.2:83494002-83494021 MS.gene05476:intron 50.0%
GGCGGTGGGTATTCACAAAT+CGG + chr6.2:83489612-83489631 MS.gene05476:CDS 50.0%
GGCTAGGCTACAAAACCTTG+TGG + chr6.2:83494837-83494856 MS.gene05476:CDS 50.0%
GGGGGCTGAGGATAACAAAA+AGG - chr6.2:83493725-83493744 None:intergenic 50.0%
GGTCAACAACGTCGTGCAAA+GGG - chr6.2:83493947-83493966 None:intergenic 50.0%
GTATCAAACCTGGGTCACCA+TGG - chr6.2:83491505-83491524 None:intergenic 50.0%
TCATCATCGTCGTCGGATTC+CGG - chr6.2:83489648-83489667 None:intergenic 50.0%
TGGTCAACAACGTCGTGCAA+AGG - chr6.2:83493948-83493967 None:intergenic 50.0%
! AGGTGAATAAGTGGGGTGTC+TGG - chr6.2:83490743-83490762 None:intergenic 50.0%
! ATGTCAATGAAAGGTGGCGG+TGG + chr6.2:83489591-83489610 MS.gene05476:CDS 50.0%
! GCGAGTTTAGCTCAGTTCGT+AGG + chr6.2:83490206-83490225 MS.gene05476:intron 50.0%
! GGTGAATAAGTGGGGTGTCT+GGG - chr6.2:83490742-83490761 None:intergenic 50.0%
! GTGACGGAAGGAACCCAATT+TGG - chr6.2:83489544-83489563 None:intergenic 50.0%
! TCCCACAGGGTACCCAAATT+GGG + chr6.2:83489528-83489547 MS.gene05476:CDS 50.0%
! TTCCCACAGGGTACCCAAAT+TGG + chr6.2:83489527-83489546 MS.gene05476:CDS 50.0%
!! CTTGGTGCTGCTGTATCTGT+TGG + chr6.2:83492524-83492543 MS.gene05476:CDS 50.0%
AATTGGCTGGACCTGGACAG+TGG + chr6.2:83492222-83492241 MS.gene05476:CDS 55.0%
ACTACATTCGCCAACGACGG+TGG + chr6.2:83489667-83489686 MS.gene05476:CDS 55.0%
ATTGGCTGGACCTGGACAGT+GGG + chr6.2:83492223-83492242 MS.gene05476:CDS 55.0%
CAGATGGGATCGTGGAGTTC+TGG + chr6.2:83489709-83489728 MS.gene05476:CDS 55.0%
CGTCGTCGGATTCCGGTAAA+GGG - chr6.2:83489641-83489660 None:intergenic 55.0%
CTCTTCAACCATGGTGACCC+AGG + chr6.2:83491494-83491513 MS.gene05476:intron 55.0%
GAAACGAACACCACCGTCGT+TGG - chr6.2:83489680-83489699 None:intergenic 55.0%
GTTTGTGCCAGTGCCCAAAC+AGG - chr6.2:83492698-83492717 None:intergenic 55.0%
TCGTCGTCGGATTCCGGTAA+AGG - chr6.2:83489642-83489661 None:intergenic 55.0%
! TCAATGAAAGGTGGCGGTGG+CGG + chr6.2:83489594-83489613 MS.gene05476:CDS 55.0%
! TTTGAGGCCTGTTTGGGCAC+TGG + chr6.2:83492688-83492707 MS.gene05476:intron 55.0%
CGACGGTGGTGTTCGTTTCG+AGG + chr6.2:83489681-83489700 MS.gene05476:CDS 60.0%
GCTATCTGGGAGCCACCTCA+TGG + chr6.2:83493260-83493279 MS.gene05476:CDS 60.0%
! AACGTGTGGCGGGGAAAGCA+TGG + chr6.2:83489742-83489761 MS.gene05476:CDS 60.0%
! ACGTGTGGCGGGGAAAGCAT+GGG + chr6.2:83489743-83489762 MS.gene05476:CDS 60.0%
! GCGGGGAAAGCATGGGAGAT+GGG + chr6.2:83489750-83489769 MS.gene05476:CDS 60.0%
! ATGAAAGGTGGCGGTGGCGG+TGG + chr6.2:83489597-83489616 MS.gene05476:CDS 65.0%
! GGCGGGGAAAGCATGGGAGA+TGG + chr6.2:83489749-83489768 MS.gene05476:CDS 65.0%
! TGAAAGGTGGCGGTGGCGGT+GGG + chr6.2:83489598-83489617 MS.gene05476:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 83489516 83494972 83489516 ID=MS.gene05476
chr6.2 mRNA 83489516 83494972 83489516 ID=MS.gene05476.t1;Parent=MS.gene05476
chr6.2 exon 83489516 83489930 83489516 ID=MS.gene05476.t1.exon1;Parent=MS.gene05476.t1
chr6.2 CDS 83489516 83489930 83489516 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
chr6.2 exon 83492138 83492281 83492138 ID=MS.gene05476.t1.exon2;Parent=MS.gene05476.t1
chr6.2 CDS 83492138 83492281 83492138 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
chr6.2 exon 83492369 83492638 83492369 ID=MS.gene05476.t1.exon3;Parent=MS.gene05476.t1
chr6.2 CDS 83492369 83492638 83492369 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
chr6.2 exon 83493014 83493150 83493014 ID=MS.gene05476.t1.exon4;Parent=MS.gene05476.t1
chr6.2 CDS 83493014 83493150 83493014 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
chr6.2 exon 83493251 83493397 83493251 ID=MS.gene05476.t1.exon5;Parent=MS.gene05476.t1
chr6.2 CDS 83493251 83493397 83493251 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
chr6.2 exon 83494286 83494972 83494286 ID=MS.gene05476.t1.exon6;Parent=MS.gene05476.t1
chr6.2 CDS 83494286 83494972 83494286 ID=cds.MS.gene05476.t1;Parent=MS.gene05476.t1
Gene Sequence

>MS.gene05476

ATGATGCAATCTTCCCACAGGGTACCCAAATTGGGTTCCTTCCGTCACAGTTTCCTTGAAAAAAAGGAAAAACTCATGTCAATGAAAGGTGGCGGTGGCGGTGGGTATTCACAAATCGGCATCCCTTTACCGGAATCCGACGACGATGATGACTACATTCGCCAACGACGGTGGTGTTCGTTTCGAGGATTTTCAGATGGGATCGTGGAGTTCTGGAAGAATTTGAAACGTGTGGCGGGGAAAGCATGGGAGATGGGTGTGTCTGATCCAAGGAAGTTTGTGTTTTCAGCGAAGATGGGTTTGGCTTTGATTTTGATTTCGTTGTTGATTTTTCTTAAACAACCGTTTCCAGATGTTGGGAAGTACTCTGTTTGGGCTATTCTTACTGTTGTTGTCGTCTTTGAGTTCAGTATAGGTAAATCATACTAATCTTTTACTACTTCATAGTAGCACCGATACTTCTGATCGAATGTCTGTGTTCCGGTTTGACACCGTAACAAACACATATATGATTACATTGAATTACGTTATTTTATCAAATTATTACACGGGTGAGGTTATTACCACCAATGACACTGTTGTAGTGTCTTAATCGGTATCCATGTAACCGTGTTTGTGTCGTGCTTCGTATTGACTTACTTCATCCGGTCTCAAATGTATGGAATAAAAAATTCAAACAAAGTTGTCTATGCGAGTTTAGCTCAGTTCGTAGGAATATTATATAATATATGTAGGGGCGGAATTCGAACCTCTGACACTACAGTTATTCACTTTAAGATGAATTCTAGCTACTAGACTACTGAAAATTTCAAACAAAGTATTGCTAATCAGTGCCTTAAGACATTTTTAAGGATACTGTTAAATTAAGAAAATACTCATTAGAAAAGTTTAACATTCCAATTTTCGATGCATTGAGTGTATGAGTTTTCATACAAACTTACTCTTTAAAGTTCTTAAAGAGTGCCCTTAGGGCACTTATTAGCATTTCCCTAATTTAAATTAGATGCATTGACTTTGTTTGTTATTTTATTTTATTTTTGCTTATATAGGAGACTAGAGGAGTACTACTCTATACCAAATAAAGAAACATTCGCAATCATTTTTTGTTTACTTGTTTTATTTATTATTTGTTTATTTAAAGTGGTCTATAATTTTGAATCTTTGATTTCTAAAGCTCAGTTGGTAGGACAATGCATTATTATATGCAGGGGCTGGGGTTCGAACCCAGACACCCCACTTATTCACCTTATAAGGTGAATTCTAGCCACTAGGCCACCTGTCCAAATTTTTTTTACTGTAGTAAAGTTGTTGAAATTAGAAAATATATCCATGAACCGAAATTTGTTTCTATTTTTAGTAATTTTATGACAACACTAGATACAGAGTACCAACAAACTAACTCACACTATTTATAGAGTACCAAACAAACTATCTAGACATAATCAAATTACCACTATTAAACTAACTAATAATTACTAGTGAAAAACACAGTCAATCAATGGTCAAAGTCAAACTAACTAGTAATTTGTGAAAGTTGTTTTTTTCAATAACCAATTATTTTTTAGTTTTCAAAATTACAAGTGGTAATTTTTTTTATATAAAAAAGTGGGAAGTAGAAAATTTGTGGTAATCATTTTACAATCACAACTTTTGAGAATGATGGTTTTTTTAATCCAATTGTGAGAATGATGGTGATGATATGATATCATTAAAACACGTGATTGTATAAAAGCAAATTTAATACTTTTAATTTTATGAAGAAATAAATAAATAAAGGAGTGTTAATTAGAACTCCAGTAAATAAATAAATAAGTAAAGGAGTGTTAATTAGCACTCCAGTAAATAAATAAATAAATAAAGGAGTGTTAATTAGCAAATTTGACCATGGTGGGACAGAAAATTGTTCATACCTATGTTAATGTTGTTTAATTTAGCTGCGTATCGCTGATTATTCTAGAATCACTTGGTTGAAAATATGCTCTTCAACCATGGTGACCCAGGTTTGATACTATGACACGCTGAAGATAATTTAGCAGTATTTCCATTTAATAGTATTCAATTGGTGATGGTGAAATCACAGGTTATAAATATTTCTGCTGCATGTTCTAAAGTCATTGTTTTGCTTATTTAAGTCAATTGTATAATGTTCATAAACTCTTTGTTATTAAATTGAAATACAGTTGACTTAAGTACACTTTATAAAGAAAAATCCATGTTCTGCGTTGACTATGGATATGACTTAAACAGAACTCGCAAAGCTTAGAGAATCTTCACCTTACAAGTTGGTTGTAAAGCGTAGACAGTCCTCAATTTACAAATCGAGTTTGTAAAGTTTAATTTGACCTTAAACTTGGAATGATTTTATAATTTATCGTAGATCTGTTGTTGAGCCAGCATATGACAAGTCCGACATATGGCTTGAATAGATCTTATAAAACTCAGACAATGCTTCAATATAAAGCGTTAGAAGTTCACACTTTACAAACTGGTTTTATTTTATTAGGTTTACTTAGGTCCAGAACCTAAAAACCTTTCATCAAGTTTTCCATTGGGTCAACAAGACAAGTATAAGTGTAAACTTTTCACTTATAAACAATAATTGGTCACAATATATCTGTGCAGGAGCAACTCTTAGCAAAGGTCTAAACAGAGGATTAGGGACTTTATCAGCTGGAGGACTTGCTTTAGCATTGGGAATGCTGTCAAAATTGGCTGGACCTGGACAGTGGGAAGAAATTGTAATCATGGTTAGCATCTTCATTGTAGGTCTGATTTTTTAATCACTTTCATCTAATCTCCTTTTTTCCTTAGCTTATACCTTGTTTTTCTGATAGTATGCTATGTGATTTGTAGGATTTTGTGCCACATATGCAAAACTATATCCAACAATGAAGGCTTATGAATATGGTTTCCGTGTGTTCTTGATCACCTATTGTTACGTTATTGTATCTGGATATCGAACCGGAGACTTTCTTCATACAGCAACAAACAGATTTTTGCTCATTGCTCTTGGTGCTGCTGTATCTGTTGGCGTAAATGTGTGCATATATCCAATATGGGCCGGTGAAGATCTACATAATCTTGTTGCAAAAAATTTCACAGGCGTAGCAACATCATTAGAAGGTTGAACCCAATAGACTTTTCTTACTTATTAAAATTAAAATTTACAACATTTGAGGCCTGTTTGGGCACTGGCACAAACACTTGTGAGATTGTTTAGCCGAGCTTACGAGAACGACTTATGACATGTCCATAAGCTATTTTCAGCTTATTGCCATAAGCTCACCAGGATAGCTTATGAAAACAGCTCTTATAATTTACATGAAACATTTTGACTTTATTTTAGTTTTTGTTATCGAAAAAGCTTATGCATAAGCACTTAATTAAGTTGTTTATCCAAAGAGGACCTTAATTTGTAATAACCATCTACTATAACATTTAGTTTTGGTGCTTCATAAACTTATTTCTTCTGTTGAATAACTTAAAGTTTCTTTTCAGGTGTTGTAAATAACTACCTTAACTGTGTTGAATACGATAGGGTGCCATCGAAAATTCTTACGTATCAAGCTTCTGATGATGTGGTTTACAGCGGTTACAGATCAGCTGTTGAATCTACAAGCACAGAAGATGCATTGGTATTACCTTTTTCTACTTAAGTTATCAGTCTATTTTATGAAGAAAAAAATGTTCATCTTTCTGACTTATCGTTGCGTTTGTGTGTTGTTGATTCGGAAGATGAGTTTTGCTATCTGGGAGCCACCTCATGGTCGTTACAAAATGTTTAGATATCCATGGAAAAATTATGTTAAAGTAAGTGGAGCACTCAGGCATTGTGCATTTATGGTCATGGCTATGCATGGATGTATACTTTCTGAAATACAGGTACCTGTGTAGCAACATTTTCTATGTAGCAACTTTTTCTGTTTGATATTAGCATTTACTTCAATTTTTTCGTGTCAGTGTCTGACACATACATGTGTCGAATACCAGACACGCCTTTAATCTGAAGCGTCGGTACTACATAGTTGATATATGTTTCCAGAAATGACGTTTGATTCTTGGAATGTAAGAGATTTTTCATCTAAACTGATATGAACCACAAAATCTAACCGTTTTGCTTTATAGGAAAAACTTCCCAGTTCCTATTGATTGTAAAGTACAAATTTATGATAAACTATTCTGTCATTGTTGAACTCTTAAGCTTCCCCTTTTTGTTATCCTCAGCCCCCTTCATATCAAATTCAAGGAGATATATGGTGCTAAACTAGAGATGTTGCGGGAGTCTTAGTCTTAATGGTTTCCTGTATAGGATTGTGATAGTAGTTTGTAACAGGACTCTCAATTATATCATTATGTATGTGGTATCAGTTAGCTTAATTATGTCCGTATATACTTCATAATAAGTAACTAGAATACTGCTAGGTGGCACCCTTTGCACGACGTTGTTGACCACAGATTGCAGAAAATAGGGGCTTGTTCAAATTCTGCTATGCTGCAGTCGCTATTTGGCGCTTAGTGCTAAATCACGTATGGCGGAACTTGATACATGTATCTTTACTATTTGGCGCTTAGTACTAAATCACGTATGGCGGAACTTGATACATGTATCTTTGTTATTTTTCAACCTATAGCGCTAATATATATCTGCTATTTGACAACACTCCTTTGCACCACTTGATTAGTATTTAAATTTTCAAACTATACACGTATCTTTATTATTTTCCAACCTATGCAAATACACGTTTACTAAACCTCCTTTTTGTGAAATAGGCTCCAGCGGAGAAGAGACAAGTTTTCCGCAAAGAGCTTAAGAAGGTAAGCTCCGAAGCGACTAAAGTTCTACGTGAACTCGGTAACAAAGTTAAAAAGATGGAGAAACTAGGCGAAGAAGACATTCTTTTTGAAGTGCACGAAGCAGTAGAAGAATTACAACAAAAAATCGACAAAAAATCTTTCATTCTTGTAAATGCAGAGCTGTGGGAAATCGGTAACAGGCCAAGAAACGAGAATGTTTCTCAAGACCTCTTACAAATGGATGAAGAAAGACATTTCTTGGAGTACAAGTCACTAAGTGAAGCTGTGCTTGATTTAAGATCAGTTAGAGTTCCAAAAAGTTGGGAAGAAAATCTTGTTTCACCCGACAACATCATTAAACCTGCTAATGTTGTTACCGACGAAAACATGTTTAGGAAACCAGCATCTTTGTCTTCACATCTTTCATTTCAAGAAGATGCACCAACAAAAGTGGAAGAATCAAAAACCTATGAAAGTGCTAGTTCATTAACTTTGTCAACATTCTCATCACTTTTGATTGAATTTGTGGCTAGGCTACAAAACCTTGTGGATTCTTTTGAAGAATTAGGTGAGAAAGCAAAGTTTAAGGACCCTCTTGAACAACAAGAACTTGTAACATCTGGTTGGACTAGGTTGTTTAATTGTTTCAAATCTAAGGATTGA
Protein sequence

>MS.gene05476.t1

MMQSSHRVPKLGSFRHSFLEKKEKLMSMKGGGGGGYSQIGIPLPESDDDDDYIRQRRWCSFRGFSDGIVEFWKNLKRVAGKAWEMGVSDPRKFVFSAKMGLALILISLLIFLKQPFPDVGKYSVWAILTVVVVFEFSIGATLSKGLNRGLGTLSAGGLALALGMLSKLAGPGQWEEIVIMVSIFIVGFCATYAKLYPTMKAYEYGFRVFLITYCYVIVSGYRTGDFLHTATNRFLLIALGAAVSVGVNVCIYPIWAGEDLHNLVAKNFTGVATSLEGVVNNYLNCVEYDRVPSKILTYQASDDVVYSGYRSAVESTSTEDALMSFAIWEPPHGRYKMFRYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRQVFRKELKKVSSEATKVLRELGNKVKKMEKLGEEDILFEVHEAVEELQQKIDKKSFILVNAELWEIGNRPRNENVSQDLLQMDEERHFLEYKSLSEAVLDLRSVRVPKSWEENLVSPDNIIKPANVVTDENMFRKPASLSSHLSFQEDAPTKVEESKTYESASSLTLSTFSSLLIEFVARLQNLVDSFEELGEKAKFKDPLEQQELVTSGWTRLFNCFKSKD