Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24930.t1 | XP_013442541.1 | 100 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 6.50E-46 | 193 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24930.t1 | Q43292 | 89.4 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 2.2e-42 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24930.t1 | G7JJE2 | 100.0 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 4.7e-46 | 193.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene24930 | -0.809419 | 1.91E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene24930 | 0.865766 | 4.65E-65 | -1.69E-46 |
| MS.gene049340 | MS.gene24930 | 0.803657 | 3.14E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene24930 | 0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene049411 | MS.gene24930 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene24930 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene24930 | 0.834374 | 3.11E-56 | -1.69E-46 |
| MS.gene049887 | MS.gene24930 | 0.810434 | 1.15E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene24930 | 0.881635 | 2.04E-70 | -1.69E-46 |
| MS.gene050290 | MS.gene24930 | 0.802959 | 4.38E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene24930 | 0.817438 | 3.30E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene24930 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene24930 | 0.829549 | 4.84E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene24930 | 0.832987 | 6.91E-56 | -1.69E-46 |
| MS.gene050752 | MS.gene24930 | 0.86987 | 2.24E-66 | -1.69E-46 |
| MS.gene050807 | MS.gene24930 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene24930 | 0.806133 | 9.54E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene24930 | 0.90033 | 8.16E-78 | -1.69E-46 |
| MS.gene050901 | MS.gene24930 | 0.80585 | 1.09E-49 | -1.69E-46 |
| MS.gene050916 | MS.gene24930 | 0.816728 | 4.76E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene24930 | 0.846195 | 2.53E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene24930 | 0.842669 | 2.25E-58 | -1.69E-46 |
| MS.gene051063 | MS.gene24930 | 0.834903 | 2.29E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene24930 | 0.815724 | 7.98E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene24930 | 0.846349 | 2.30E-59 | -1.69E-46 |
| MS.gene051243 | MS.gene24930 | 0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene24930 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene24930 | 0.867839 | 1.02E-65 | -1.69E-46 |
| MS.gene051330 | MS.gene24930 | 0.857126 | 2.02E-62 | -1.69E-46 |
| MS.gene051343 | MS.gene24930 | 0.829307 | 5.54E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene24930 | 0.875839 | 2.25E-68 | -1.69E-46 |
| MS.gene051451 | MS.gene24930 | 0.823522 | 1.32E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene24930 | 0.807914 | 4.01E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene24930 | 0.842848 | 2.01E-58 | -1.69E-46 |
| MS.gene051746 | MS.gene24930 | 0.882051 | 1.44E-70 | -1.69E-46 |
| MS.gene051748 | MS.gene24930 | 0.867614 | 1.20E-65 | -1.69E-46 |
| MS.gene051756 | MS.gene24930 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene051791 | MS.gene24930 | 0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene24930 | 0.853257 | 2.69E-61 | -1.69E-46 |
| MS.gene051885 | MS.gene24930 | 0.817258 | 3.62E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene24930 | 0.859939 | 2.92E-63 | -1.69E-46 |
| MS.gene051903 | MS.gene24930 | 0.884749 | 1.47E-71 | -1.69E-46 |
| MS.gene051975 | MS.gene24930 | 0.850715 | 1.42E-60 | -1.69E-46 |
| MS.gene052133 | MS.gene24930 | 0.841701 | 4.05E-58 | -1.69E-46 |
| MS.gene052286 | MS.gene24930 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene24930 | 0.800313 | 1.53E-48 | -1.69E-46 |
| MS.gene052479 | MS.gene24930 | 0.810964 | 8.87E-51 | -1.69E-46 |
| MS.gene052879 | MS.gene24930 | 0.802738 | 4.87E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene24930 | 0.952652 | 1.53E-110 | -1.69E-46 |
| MS.gene053058 | MS.gene24930 | 0.837408 | 5.29E-57 | -1.69E-46 |
| MS.gene053109 | MS.gene24930 | 0.83695 | 6.93E-57 | -1.69E-46 |
| MS.gene053122 | MS.gene24930 | 0.802599 | 5.20E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene24930 | 0.81212 | 4.97E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene24930 | 0.839973 | 1.15E-57 | -1.69E-46 |
| MS.gene053590 | MS.gene24930 | 0.817039 | 4.05E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene24930 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene24930 | 0.860384 | 2.15E-63 | -1.69E-46 |
| MS.gene054403 | MS.gene24930 | 0.8698 | 2.36E-66 | -1.69E-46 |
| MS.gene05469 | MS.gene24930 | 0.81583 | 7.56E-52 | -1.69E-46 |
| MS.gene05476 | MS.gene24930 | 0.805565 | 1.26E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene24930 | 0.850746 | 1.39E-60 | -1.69E-46 |
| MS.gene055162 | MS.gene24930 | 0.843633 | 1.24E-58 | -1.69E-46 |
| MS.gene05517 | MS.gene24930 | 0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene24930 | 0.838221 | 3.27E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene24930 | 0.81353 | 2.44E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene24930 | 0.835535 | 1.59E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene24930 | 0.818988 | 1.47E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene24930 | -0.821078 | 4.89E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene24930 | 0.833416 | 5.40E-56 | -1.69E-46 |
| MS.gene055979 | MS.gene24930 | 0.801093 | 1.06E-48 | -1.69E-46 |
| MS.gene056043 | MS.gene24930 | -0.833516 | 5.10E-56 | -1.69E-46 |
| MS.gene056075 | MS.gene24930 | 0.874715 | 5.44E-68 | -1.69E-46 |
| MS.gene056091 | MS.gene24930 | 0.813241 | 2.83E-51 | -1.69E-46 |
| MS.gene056215 | MS.gene24930 | 0.857942 | 1.16E-62 | -1.69E-46 |
| MS.gene056432 | MS.gene24930 | 0.802724 | 4.90E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene24930 | 0.83654 | 8.81E-57 | -1.69E-46 |
| MS.gene056601 | MS.gene24930 | 0.829839 | 4.11E-55 | -1.69E-46 |
| MS.gene056631 | MS.gene24930 | 0.89496 | 1.51E-75 | -1.69E-46 |
| MS.gene056986 | MS.gene24930 | 0.837393 | 5.34E-57 | -1.69E-46 |
| MS.gene057057 | MS.gene24930 | 0.847139 | 1.40E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene24930 | 0.8776 | 5.52E-69 | -1.69E-46 |
| MS.gene057140 | MS.gene24930 | 0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene057206 | MS.gene24930 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene24930 | 0.859907 | 2.99E-63 | -1.69E-46 |
| MS.gene057694 | MS.gene24930 | 0.848046 | 7.87E-60 | -1.69E-46 |
| MS.gene057705 | MS.gene24930 | 0.898803 | 3.71E-77 | -1.69E-46 |
| MS.gene05781 | MS.gene24930 | 0.809957 | 1.46E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene24930 | 0.81416 | 1.78E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene24930 | 0.84047 | 8.53E-58 | -1.69E-46 |
| MS.gene058074 | MS.gene24930 | 0.823642 | 1.24E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene24930 | 0.813065 | 3.09E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene24930 | 0.834571 | 2.78E-56 | -1.69E-46 |
| MS.gene058364 | MS.gene24930 | 0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene058646 | MS.gene24930 | 0.801793 | 7.61E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene24930 | 0.836112 | 1.13E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene24930 | 0.860309 | 2.26E-63 | -1.69E-46 |
| MS.gene059146 | MS.gene24930 | 0.834191 | 3.46E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene24930 | 0.826677 | 2.38E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene24930 | 0.845327 | 4.35E-59 | -1.69E-46 |
| MS.gene05978 | MS.gene24930 | 0.808785 | 2.61E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene24930 | 0.822723 | 2.03E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene24930 | 0.922016 | 1.70E-88 | -1.69E-46 |
| MS.gene06011 | MS.gene24930 | 0.849346 | 3.43E-60 | -1.69E-46 |
| MS.gene060429 | MS.gene24930 | 0.885578 | 7.20E-72 | -1.69E-46 |
| MS.gene060463 | MS.gene24930 | 0.826808 | 2.21E-54 | -1.69E-46 |
| MS.gene060465 | MS.gene24930 | 0.82614 | 3.19E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene24930 | 0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene24930 | 0.834971 | 2.20E-56 | -1.69E-46 |
| MS.gene060917 | MS.gene24930 | 0.862122 | 6.34E-64 | -1.69E-46 |
| MS.gene061145 | MS.gene24930 | 0.815501 | 8.95E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85108 | MS.gene24930 | PPI |
| MS.gene052947 | MS.gene24930 | PPI |
| MS.gene33384 | MS.gene24930 | PPI |
| MS.gene47819 | MS.gene24930 | PPI |
| MS.gene24930 | MS.gene85108 | PPI |
| MS.gene36310 | MS.gene24930 | PPI |
| MS.gene24930 | MS.gene068255 | PPI |
| MS.gene24930 | MS.gene36310 | PPI |
| MS.gene24930 | MS.gene85110 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24930.t1 | MTR_0147s0070 | 100.000 | 95 | 0 | 0 | 1 | 95 | 1 | 95 | 3.99e-65 | 191 |
| MS.gene24930.t1 | MTR_2g101900 | 96.809 | 94 | 3 | 0 | 1 | 94 | 1 | 94 | 1.39e-62 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24930.t1 | AT1G52300 | 89.362 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 1.65e-57 | 172 |
| MS.gene24930.t1 | AT3G16080 | 88.298 | 94 | 11 | 0 | 1 | 94 | 1 | 94 | 4.05e-57 | 171 |
| MS.gene24930.t1 | AT1G15250 | 87.368 | 95 | 12 | 0 | 1 | 95 | 1 | 95 | 7.25e-57 | 170 |
| MS.gene24930.t1 | AT1G15250 | 87.368 | 95 | 12 | 0 | 1 | 95 | 1 | 95 | 7.25e-57 | 170 |
| MS.gene24930.t1 | AT3G16080 | 93.333 | 45 | 3 | 0 | 1 | 45 | 1 | 45 | 9.42e-25 | 89.0 |
Find 28 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAGCTGCTCCCTTGTTCC+TGG | 0.247813 | 4.3:+84433311 | None:intergenic |
| ACTGGAGTGAGAAGGCTATT+AGG | 0.322324 | 4.3:-84434332 | MS.gene24930:CDS |
| ATTGTGTGATTTCAGATAAC+TGG | 0.324608 | 4.3:-84434350 | MS.gene24930:intron |
| GGTAAGGGAACAGGCAGTTT+TGG | 0.365234 | 4.3:-84434643 | MS.gene24930:CDS |
| ATGCTGAGCAGCGACTCTTC+TGG | 0.400063 | 4.3:+84434560 | None:intergenic |
| CATTTCCTGACACGTGCAGC+TGG | 0.423824 | 4.3:+84434529 | None:intergenic |
| AGACCCACACACTCTGTGTT+AGG | 0.433282 | 4.3:-84434606 | MS.gene24930:CDS |
| GCAGCTGCTCCCTTGTTCCT+GGG | 0.437974 | 4.3:+84433312 | None:intergenic |
| AGGAGAAAGACCACTGGAAC+TGG | 0.467139 | 4.3:-84434312 | MS.gene24930:CDS |
| CTTACCCAGCTGCACGTGTC+AGG | 0.470321 | 4.3:-84434534 | MS.gene24930:CDS |
| TGAAGCTGCACCCAGGAACA+AGG | 0.550050 | 4.3:-84433322 | MS.gene24930:CDS |
| AGCAGCGACTCTTCTGGAGA+TGG | 0.555977 | 4.3:+84434566 | None:intergenic |
| CACACCTAACACAGAGTGTG+TGG | 0.573805 | 4.3:+84434602 | None:intergenic |
| TTCAAGAGTGGATTCAGAGA+AGG | 0.583941 | 4.3:-84434255 | MS.gene24930:intron |
| TTCAGATAACTGGAGTGAGA+AGG | 0.609846 | 4.3:-84434340 | MS.gene24930:intron |
| ATTTCCTGACACGTGCAGCT+GGG | 0.610760 | 4.3:+84434530 | None:intergenic |
| CCACTGGAACTGGTAGGATG+AGG | 0.619264 | 4.3:-84434302 | MS.gene24930:CDS |
| GCTATTAGGAGAAAGACCAC+TGG | 0.627964 | 4.3:-84434318 | MS.gene24930:CDS |
| CTGGTAGGATGAGGTACTTG+AGG | 0.643276 | 4.3:-84434293 | MS.gene24930:CDS |
| CACACACTCTGTGTTAGGTG+TGG | 0.644280 | 4.3:-84434601 | MS.gene24930:CDS |
| GAAAGACCACTGGAACTGGT+AGG | 0.652178 | 4.3:-84434308 | MS.gene24930:CDS |
| GAAGCTGCACCCAGGAACAA+GGG | 0.652652 | 4.3:-84433321 | MS.gene24930:CDS |
| TCTGGAGATGGAAACTGCGA+CGG | 0.655757 | 4.3:+84434578 | None:intergenic |
| CCTCATCCTACCAGTTCCAG+TGG | 0.656605 | 4.3:+84434302 | None:intergenic |
| CAGGTACTGAAGCTGCACCC+AGG | 0.673244 | 4.3:-84433329 | MS.gene24930:CDS |
| ACACCTAACACAGAGTGTGT+GGG | 0.685746 | 4.3:+84434603 | None:intergenic |
| GTGCCTCGCAGATTCAAGAG+TGG | 0.690811 | 4.3:-84434267 | MS.gene24930:CDS |
| AATCCACTCTTGAATCTGCG+AGG | 0.695196 | 4.3:+84434264 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTTAAATTATTTTTATATA+TGG | - | chr4.3:84434238-84434257 | MS.gene24930:intron | 10.0% |
| !! | TTGAAAAAACCTAATAAAAA+TGG | - | chr4.3:84434308-84434327 | MS.gene24930:CDS | 15.0% |
| !! | TTTGTTGATATGATTATTAT+TGG | - | chr4.3:84434684-84434703 | MS.gene24930:intron | 15.0% |
| !!! | AAAATTTGATTTTTGGATTT+GGG | - | chr4.3:84433661-84433680 | MS.gene24930:intron | 15.0% |
| !!! | TTCTAGAATTATCATTTTTT+TGG | - | chr4.3:84433978-84433997 | MS.gene24930:intron | 15.0% |
| !!! | TTTTTTCGATTTTAGAAAAT+GGG | - | chr4.3:84433544-84433563 | MS.gene24930:intron | 15.0% |
| !!! | TTTTTTTCGATTTTAGAAAA+TGG | - | chr4.3:84433543-84433562 | MS.gene24930:intron | 15.0% |
| !! | ATTTAATTGATTGATCAATC+AGG | - | chr4.3:84433949-84433968 | MS.gene24930:intron | 20.0% |
| !! | TTAGTAGATAAGTTCAAATA+AGG | - | chr4.3:84434366-84434385 | MS.gene24930:intron | 20.0% |
| !!! | ATTATTGAATGATTTTTGCA+GGG | - | chr4.3:84433378-84433397 | MS.gene24930:intron | 20.0% |
| !!! | ATTTTGACATGTTTTACTAT+AGG | - | chr4.3:84434494-84434513 | MS.gene24930:intron | 20.0% |
| !!! | CAAAATTTGATTTTTGGATT+TGG | - | chr4.3:84433660-84433679 | MS.gene24930:intron | 20.0% |
| !!! | GTTTATTGATTTTCGAAAAT+GGG | - | chr4.3:84433630-84433649 | MS.gene24930:intron | 20.0% |
| !!! | TGTTTATTGATTTTCGAAAA+TGG | - | chr4.3:84433629-84433648 | MS.gene24930:intron | 20.0% |
| !!! | TTGTGTCAAAATTTGATTTT+TGG | - | chr4.3:84433654-84433673 | MS.gene24930:intron | 20.0% |
| ! | ATTCACATAAAACAGAGATT+TGG | + | chr4.3:84434538-84434557 | None:intergenic | 25.0% |
| !! | GATTATTGAATGATTTTTGC+AGG | - | chr4.3:84433377-84433396 | MS.gene24930:intron | 25.0% |
| !! | TGATTATTATTGGTTAAACC+AGG | - | chr4.3:84434694-84434713 | MS.gene24930:intron | 25.0% |
| !!! | AGCTTATGACCATTTTTATT+AGG | + | chr4.3:84434320-84434339 | None:intergenic | 25.0% |
| !!! | ATTTTGGTGTCTTTAGATTT+AGG | - | chr4.3:84433584-84433603 | MS.gene24930:intron | 25.0% |
| !!! | GTTACTAAATGAGTTGATTT+AGG | - | chr4.3:84434089-84434108 | MS.gene24930:intron | 25.0% |
| !!! | TTCTGAGTTGTTATTTTTTC+TGG | - | chr4.3:84434653-84434672 | MS.gene24930:intron | 25.0% |
| !!! | TTGGTGTTTAAATTCGATTT+TGG | - | chr4.3:84433568-84433587 | MS.gene24930:intron | 25.0% |
| !!! | TTTTGGTGTCTTTAGATTTA+GGG | - | chr4.3:84433585-84433604 | MS.gene24930:intron | 25.0% |
| AATTTAGATCAGTTGGATCT+TGG | - | chr4.3:84434406-84434425 | MS.gene24930:intron | 30.0% | |
| ATTGTGTGATTTCAGATAAC+TGG | - | chr4.3:84433692-84433711 | MS.gene24930:intron | 30.0% | |
| TACACCCAAATAAAGAGATT+TGG | + | chr4.3:84434119-84434138 | None:intergenic | 30.0% | |
| ! | AGAGCCAAATCTCTTTATTT+GGG | - | chr4.3:84434112-84434131 | MS.gene24930:intron | 30.0% |
| ! | AGGTTCTAATTTAGATCAGT+TGG | - | chr4.3:84434399-84434418 | MS.gene24930:intron | 30.0% |
| ! | CTTTTGTTAGCATGATTGTA+TGG | - | chr4.3:84434614-84434633 | MS.gene24930:CDS | 30.0% |
| ! | TAGATTTAGGGTTTAAGTTC+AGG | - | chr4.3:84433597-84433616 | MS.gene24930:intron | 30.0% |
| !! | TCGATTTTAGAAAATGGGTT+TGG | - | chr4.3:84433549-84433568 | MS.gene24930:intron | 30.0% |
| GAGAGCCAAATCTCTTTATT+TGG | - | chr4.3:84434111-84434130 | MS.gene24930:intron | 35.0% | |
| GATCTAAATTAGAACCTGCA+TGG | + | chr4.3:84434396-84434415 | None:intergenic | 35.0% | |
| GTGCTAGAAAAACTAAACAC+AGG | + | chr4.3:84433835-84433854 | None:intergenic | 35.0% | |
| TCAGACACTGTAATGAAACT+GGG | + | chr4.3:84433354-84433373 | None:intergenic | 35.0% | |
| TTCAGACACTGTAATGAAAC+TGG | + | chr4.3:84433355-84433374 | None:intergenic | 35.0% | |
| ! | GAATGATTTTTGCAGGGTAA+GGG | - | chr4.3:84433384-84433403 | MS.gene24930:intron | 35.0% |
| ! | TAGGGTTTAAGTTCAGGAAA+TGG | - | chr4.3:84433603-84433622 | MS.gene24930:intron | 35.0% |
| ! | TGAATGATTTTTGCAGGGTA+AGG | - | chr4.3:84433383-84433402 | MS.gene24930:intron | 35.0% |
| !! | AGTTGGATCTTGGTTCTTTT+AGG | - | chr4.3:84434416-84434435 | MS.gene24930:intron | 35.0% |
| !!! | TTGGGTGTAGCAACTTTTTT+GGG | - | chr4.3:84434130-84434149 | MS.gene24930:intron | 35.0% |
| !!! | TTTGGGTGTAGCAACTTTTT+TGG | - | chr4.3:84434129-84434148 | MS.gene24930:intron | 35.0% |
| CAGACACTGTAATGAAACTG+GGG | + | chr4.3:84433353-84433372 | None:intergenic | 40.0% | |
| TCAAATAAGGCAATCCATGC+AGG | - | chr4.3:84434379-84434398 | MS.gene24930:intron | 40.0% | |
| TTCAGATAACTGGAGTGAGA+AGG | - | chr4.3:84433702-84433721 | MS.gene24930:intron | 40.0% | |
| ! | CTGTAATGAAACTGGGGTTT+TGG | + | chr4.3:84433347-84433366 | None:intergenic | 40.0% |
| ! | TTCAAGAGTGGATTCAGAGA+AGG | - | chr4.3:84433787-84433806 | MS.gene24930:intron | 40.0% |
| AATCCACTCTTGAATCTGCG+AGG | + | chr4.3:84433781-84433800 | None:intergenic | 45.0% | |
| ACACCTAACACAGAGTGTGT+GGG | + | chr4.3:84433442-84433461 | None:intergenic | 45.0% | |
| ACTGGAGTGAGAAGGCTATT+AGG | - | chr4.3:84433710-84433729 | MS.gene24930:intron | 45.0% | |
| GCTATTAGGAGAAAGACCAC+TGG | - | chr4.3:84433724-84433743 | MS.gene24930:intron | 45.0% | |
| ! | TTTTTGCAGGGTAAGGGAAC+AGG | - | chr4.3:84433390-84433409 | MS.gene24930:intron | 45.0% |
| !! | CAGGCAGTTTTGGTAAGAGA+AGG | - | chr4.3:84433409-84433428 | MS.gene24930:intron | 45.0% |
| !!! | AAACTGGGGTTTTGGATCGA+AGG | + | chr4.3:84433339-84433358 | None:intergenic | 45.0% |
| AGACCCACACACTCTGTGTT+AGG | - | chr4.3:84433436-84433455 | MS.gene24930:intron | 50.0% | |
| AGGAGAAAGACCACTGGAAC+TGG | - | chr4.3:84433730-84433749 | MS.gene24930:intron | 50.0% | |
| ATTTCCTGACACGTGCAGCT+GGG | + | chr4.3:84433515-84433534 | None:intergenic | 50.0% | |
| CACACACTCTGTGTTAGGTG+TGG | - | chr4.3:84433441-84433460 | MS.gene24930:intron | 50.0% | |
| CACACCTAACACAGAGTGTG+TGG | + | chr4.3:84433443-84433462 | None:intergenic | 50.0% | |
| GAAAGACCACTGGAACTGGT+AGG | - | chr4.3:84433734-84433753 | MS.gene24930:intron | 50.0% | |
| TCTGGAGATGGAAACTGCGA+CGG | + | chr4.3:84433467-84433486 | None:intergenic | 50.0% | |
| ! | CTGGTAGGATGAGGTACTTG+AGG | - | chr4.3:84433749-84433768 | MS.gene24930:intron | 50.0% |
| ! | GGTAAGGGAACAGGCAGTTT+TGG | - | chr4.3:84433399-84433418 | MS.gene24930:intron | 50.0% |
| ATGCTGAGCAGCGACTCTTC+TGG | + | chr4.3:84433485-84433504 | None:intergenic | 55.0% | |
| CATTTCCTGACACGTGCAGC+TGG | + | chr4.3:84433516-84433535 | None:intergenic | 55.0% | |
| CCACTGGAACTGGTAGGATG+AGG | - | chr4.3:84433740-84433759 | MS.gene24930:intron | 55.0% | |
| CCTCATCCTACCAGTTCCAG+TGG | + | chr4.3:84433743-84433762 | None:intergenic | 55.0% | |
| GAAGCTGCACCCAGGAACAA+GGG | - | chr4.3:84434721-84434740 | MS.gene24930:intron | 55.0% | |
| GTGCCTCGCAGATTCAAGAG+TGG | - | chr4.3:84433775-84433794 | MS.gene24930:intron | 55.0% | |
| TGAAGCTGCACCCAGGAACA+AGG | - | chr4.3:84434720-84434739 | MS.gene24930:intron | 55.0% | |
| ! | AGCAGCGACTCTTCTGGAGA+TGG | + | chr4.3:84433479-84433498 | None:intergenic | 55.0% |
| AGCAGCTGCTCCCTTGTTCC+TGG | + | chr4.3:84434734-84434753 | None:intergenic | 60.0% | |
| CTGGGTGCAGCTTCAGTACC+TGG | + | chr4.3:84434715-84434734 | None:intergenic | 60.0% | |
| CTTACCCAGCTGCACGTGTC+AGG | - | chr4.3:84433508-84433527 | MS.gene24930:intron | 60.0% | |
| GCAGCTGCTCCCTTGTTCCT+GGG | + | chr4.3:84434733-84434752 | None:intergenic | 60.0% | |
| !! | CAGGTACTGAAGCTGCACCC+AGG | - | chr4.3:84434713-84434732 | MS.gene24930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 84433302 | 84434762 | 84433302 | ID=MS.gene24930 |
| chr4.3 | mRNA | 84433302 | 84434762 | 84433302 | ID=MS.gene24930.t1;Parent=MS.gene24930 |
| chr4.3 | exon | 84434760 | 84434762 | 84434760 | ID=MS.gene24930.t1.exon1;Parent=MS.gene24930.t1 |
| chr4.3 | CDS | 84434760 | 84434762 | 84434760 | ID=cds.MS.gene24930.t1;Parent=MS.gene24930.t1 |
| chr4.3 | exon | 84434530 | 84434665 | 84434530 | ID=MS.gene24930.t1.exon2;Parent=MS.gene24930.t1 |
| chr4.3 | CDS | 84434530 | 84434665 | 84434530 | ID=cds.MS.gene24930.t1;Parent=MS.gene24930.t1 |
| chr4.3 | exon | 84434256 | 84434357 | 84434256 | ID=MS.gene24930.t1.exon3;Parent=MS.gene24930.t1 |
| chr4.3 | CDS | 84434256 | 84434357 | 84434256 | ID=cds.MS.gene24930.t1;Parent=MS.gene24930.t1 |
| chr4.3 | exon | 84433302 | 84433348 | 84433302 | ID=MS.gene24930.t1.exon4;Parent=MS.gene24930.t1 |
| chr4.3 | CDS | 84433302 | 84433348 | 84433302 | ID=cds.MS.gene24930.t1;Parent=MS.gene24930.t1 |
| Gene Sequence |
| Protein sequence |
