AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49906


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49906.t1 MTR_6g084680 93.178 601 13 2 1 575 1 599 0.0 1135
MS.gene49906.t1 MTR_8g104110 70.669 583 147 9 7 573 4 578 0.0 820
MS.gene49906.t1 MTR_8g104120 70.486 576 158 6 7 573 4 576 0.0 805
MS.gene49906.t1 MTR_8g104130 68.715 537 142 8 49 575 48 568 0.0 724
MS.gene49906.t1 MTR_1g111250 55.437 561 213 10 10 556 10 547 0.0 592
MS.gene49906.t1 MTR_1g115175 32.227 512 308 11 47 552 20 498 5.94e-81 264
MS.gene49906.t1 MTR_5g014310 33.271 532 298 13 47 562 40 530 1.51e-80 263
MS.gene49906.t1 MTR_4g098570 34.442 511 293 11 47 552 32 505 8.20e-80 261
MS.gene49906.t1 MTR_1g077660 36.842 361 213 5 44 402 30 377 1.73e-79 258
MS.gene49906.t1 MTR_1g115140 31.660 518 316 12 38 552 22 504 3.71e-78 256
MS.gene49906.t1 MTR_1g115190 33.142 522 307 12 38 552 19 505 3.43e-76 251
MS.gene49906.t1 MTR_1g077670 36.011 361 217 5 44 402 36 384 1.22e-72 240
MS.gene49906.t1 MTR_4g098610 32.752 516 295 11 47 552 32 505 6.59e-70 234
MS.gene49906.t1 MTR_2g087288 37.463 339 198 5 46 381 23 350 2.87e-69 231
MS.gene49906.t1 MTR_2g087285 36.176 340 200 7 48 383 25 351 3.34e-62 212
MS.gene49906.t1 MTR_7g094770 34.503 342 205 8 65 400 61 389 8.20e-61 208
MS.gene49906.t1 MTR_7g106260 34.061 458 259 12 36 476 13 444 8.39e-61 209
MS.gene49906.t1 MTR_4g051575 33.231 325 206 4 60 383 41 355 2.77e-60 207
MS.gene49906.t1 MTR_6g015325 70.238 84 23 1 115 198 7 88 6.16e-33 122
MS.gene49906.t1 MTR_4g051575 29.224 219 145 3 166 383 12 221 2.20e-32 127
MS.gene49906.t1 MTR_1g077870 71.429 84 22 1 112 195 189 270 4.09e-32 125
MS.gene49906.t1 MTR_0710s0020 44.643 168 86 4 38 203 19 181 4.38e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49906.t1 AT3G18440 59.664 595 177 9 10 563 4 576 0.0 679
MS.gene49906.t1 AT1G18420 59.475 533 183 10 40 556 66 581 0.0 612
MS.gene49906.t1 AT1G18420 59.961 512 175 9 61 556 1 498 0.0 599
MS.gene49906.t1 AT1G25480 56.000 525 207 7 42 559 41 548 0.0 553
MS.gene49906.t1 AT1G68600 55.361 513 210 6 48 556 36 533 0.0 540
MS.gene49906.t1 AT2G17470 54.159 517 206 7 60 567 31 525 0.0 531
MS.gene49906.t1 AT2G17470 54.159 517 206 7 60 567 53 547 0.0 530
MS.gene49906.t1 AT5G46610 32.558 516 319 8 44 552 25 518 4.07e-87 280
MS.gene49906.t1 AT4G17970 32.270 533 314 10 44 552 23 532 5.22e-87 280
MS.gene49906.t1 AT5G46600 32.157 510 325 11 49 552 31 525 8.01e-79 258
MS.gene49906.t1 AT4G00910 37.119 361 211 7 51 404 46 397 2.36e-75 248
MS.gene49906.t1 AT5G46610 29.457 516 311 9 44 552 25 494 4.51e-70 235
MS.gene49906.t1 AT1G08430 33.913 345 217 7 49 389 2 339 1.52e-69 233
MS.gene49906.t1 AT1G08440 34.639 332 209 5 51 381 4 328 9.02e-68 228
MS.gene49906.t1 AT5G46610 28.488 516 293 9 44 552 25 471 4.01e-65 221
MS.gene49906.t1 AT3G11680 37.830 341 192 6 42 381 27 348 5.63e-65 220
MS.gene49906.t1 AT3G11680 37.830 341 192 6 42 381 25 346 5.96e-65 220
MS.gene49906.t1 AT2G27240 34.663 326 205 5 65 389 18 336 5.41e-64 218
MS.gene49906.t1 AT2G27240 33.429 350 203 7 65 389 18 362 4.42e-61 210

Find 106 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCACAGGGTACCCAAAT+TGG 0.162014 6.4:+58532198 MS.gene49906:CDS
GTTTAATTGTTTCAAATCTA+AGG 0.218930 6.4:+58537626 MS.gene49906:CDS
ACTCAGGCATTGTGCATTTA+TGG 0.225741 6.4:+58536018 MS.gene49906:CDS
ACAATGAAGGCTTATGAATA+TGG 0.228453 6.4:+58535082 MS.gene49906:CDS
TATTGTTACGTTATTGTATC+TGG 0.230169 6.4:+58535127 MS.gene49906:CDS
TGAGAAACATTCTCGTTTCT+TGG 0.242314 6.4:-58537192 None:intergenic
GTGACGGAAGGAACCCAATT+TGG 0.242848 6.4:-58532212 None:intergenic
AGGTGAGAAAGCAAAGTTTA+AGG 0.271199 6.4:+58537557 MS.gene49906:CDS
AAAGGTCTAAACAGAGGATT+AGG 0.284845 6.4:+58534833 MS.gene49906:CDS
ATGTGTGCATATATCCAATA+TGG 0.288826 6.4:+58535233 MS.gene49906:CDS
CAGATGGGATCGTGGAGTTC+TGG 0.299939 6.4:+58532386 MS.gene49906:intron
TTACCGACGAAAACATGTTT+AGG 0.343971 6.4:+58537364 MS.gene49906:CDS
GGATGAAGAAAGACAGTTCT+TGG 0.345827 6.4:+58537230 MS.gene49906:CDS
ATTGGGAATGCTGTCAAAAT+TGG 0.369611 6.4:+58534886 MS.gene49906:CDS
AGATCTTCACCGGCCCATAT+TGG 0.373138 6.4:-58535247 None:intergenic
TAATGAACTAGCACTTTCAT+AGG 0.375230 6.4:-58537457 None:intergenic
ATGGTTAGCATCTTCATTGT+AGG 0.378298 6.4:+58534941 MS.gene49906:CDS
AGCAGGTTTAATGATGTTAT+CGG 0.382986 6.4:-58537334 None:intergenic
TATTCATAAGCCTTCATTGT+TGG 0.386844 6.4:-58535079 None:intergenic
TTTCTTCATCCATTTGTAAG+AGG 0.389222 6.4:-58537218 None:intergenic
TGTTGGGAAGTACTCTGTTT+GGG 0.395794 6.4:+58532546 MS.gene49906:CDS
ATGTTGGGAAGTACTCTGTT+TGG 0.397740 6.4:+58532545 MS.gene49906:CDS
GGAGGACTTGCTTTAGCATT+GGG 0.398305 6.4:+58534869 MS.gene49906:CDS
AAAGGCGGTGGTGGTGGTAT+TGG 0.404354 6.4:+58532271 MS.gene49906:CDS
GCTGAAAACACAAACTTCCT+TGG 0.420798 6.4:-58532460 None:intergenic
AGCTGTGGGAAATCGGTAAC+AGG 0.424395 6.4:+58537169 MS.gene49906:CDS
TCTCACAGGGTACCCAAATT+GGG 0.427310 6.4:+58532199 MS.gene49906:CDS
TGACGGAAGGAACCCAATTT+GGG 0.431746 6.4:-58532211 None:intergenic
TTACCTTCTTAAGCTCTTTG+CGG 0.432353 6.4:-58536993 None:intergenic
ACAGAGTACTTCCCAACATC+TGG 0.433300 6.4:-58532541 None:intergenic
AAACAACCGTTTCCAGATGT+TGG 0.434028 6.4:+58532529 MS.gene49906:CDS
AATGCAGAGCTGTGGGAAAT+CGG 0.437214 6.4:+58537162 MS.gene49906:CDS
TTCTCAAGACCTCTTACAAA+TGG 0.444082 6.4:+58537209 MS.gene49906:CDS
CTGTCAAAATTGGCTGGACC+TGG 0.444488 6.4:+58534896 MS.gene49906:CDS
AGATACAATAACGTAACAAT+AGG 0.444661 6.4:-58535125 None:intergenic
AACAACCGTTTCCAGATGTT+GGG 0.444870 6.4:+58532530 MS.gene49906:CDS
GGCGGTGGTGGTGGTATTGG+TGG 0.449770 6.4:+58532274 MS.gene49906:CDS
CAACAAGAACTTGTAACATC+TGG 0.450503 6.4:+58537591 MS.gene49906:CDS
ACGTAGAACTTTAGTCGCTT+CGG 0.460306 6.4:-58537019 None:intergenic
AAGAATTTGAAACGTGTGGC+GGG 0.462155 6.4:+58532409 MS.gene49906:CDS
GCAGGTTTAATGATGTTATC+GGG 0.463058 6.4:-58537333 None:intergenic
ACAATTTCTTCCCACTGTCC+AGG 0.463381 6.4:-58534914 None:intergenic
TGGAGGACTTGCTTTAGCAT+TGG 0.464724 6.4:+58534868 MS.gene49906:CDS
ATGTATACTTTCTGAAATAC+AGG 0.465569 6.4:+58536057 MS.gene49906:CDS
GGCGGGGAAAGCATGGGAGA+TGG 0.469847 6.4:+58532426 MS.gene49906:CDS
GTGGGAAGAAATTGTAATCA+TGG 0.470172 6.4:+58534922 MS.gene49906:CDS
TATCGTATTCAACACAGTTA+AGG 0.478209 6.4:-58535711 None:intergenic
ATTGGTGGCTATTCACAAAT+CGG 0.487156 6.4:+58532289 MS.gene49906:CDS
TCGTCGGTAACAACATTAGC+AGG 0.490901 6.4:-58537351 None:intergenic
GCGGGGAAAGCATGGGAGAT+GGG 0.493929 6.4:+58532427 MS.gene49906:CDS
AAAACTTGTCTCTTCTCCGC+TGG 0.500088 6.4:-58536970 None:intergenic
AGAAGATGCACCAACAAAAG+TGG 0.500956 6.4:+58537422 MS.gene49906:CDS
AACGTGTGGCGGGGAAAGCA+TGG 0.504246 6.4:+58532419 MS.gene49906:CDS
TTTCCGCAAAGAGCTTAAGA+AGG 0.514375 6.4:+58536990 MS.gene49906:CDS
ATTGTATCTGGATATCGAAC+CGG 0.516050 6.4:+58535139 MS.gene49906:CDS
CTTGGTGCTGCTGTATCTGT+TGG 0.524842 6.4:+58535205 MS.gene49906:CDS
CCATGATGCAATCTTCTCAC+AGG 0.526047 6.4:+58532185 None:intergenic
TGCTGTATGAAGAAAGTCTC+CGG 0.530779 6.4:-58535158 None:intergenic
GCATTGTGCATTTATGGTCA+TGG 0.531427 6.4:+58536024 MS.gene49906:CDS
GGATTAGGGACTTTATCAGC+TGG 0.536839 6.4:+58534848 MS.gene49906:CDS
ACAAAATGTTTAGATATCCA+TGG 0.538110 6.4:+58535969 MS.gene49906:CDS
TTCAAGGAAACTGTGACGGA+AGG 0.540338 6.4:-58532224 None:intergenic
GGAATGCTGTCAAAATTGGC+TGG 0.542934 6.4:+58534890 MS.gene49906:CDS
TTCTTGTAAATGCAGAGCTG+TGG 0.543062 6.4:+58537154 MS.gene49906:CDS
CAAGTTCTTGTTGTTCAAGA+GGG 0.543303 6.4:-58537581 None:intergenic
GCTATCTGGGAGCCACCTCA+TGG 0.545299 6.4:+58535941 MS.gene49906:CDS
GTCGTCTTTGAGTTCAGTAT+AGG 0.545881 6.4:+58532586 MS.gene49906:CDS
TACTTCCCAACATCTGGAAA+CGG 0.547879 6.4:-58532535 None:intergenic
TACAAGCACAGAAGATGCAT+TGG 0.549163 6.4:+58535810 MS.gene49906:CDS
GTATCAAGCTTCTGATGATG+TGG 0.550964 6.4:+58535756 MS.gene49906:CDS
GGCGTAGCAACATCATTAGA+AGG 0.551490 6.4:+58535298 MS.gene49906:CDS
TGTGTGCATATATCCAATAT+GGG 0.552034 6.4:+58535234 MS.gene49906:CDS
TTGTAACATCTGGTTGGACT+AGG 0.554110 6.4:+58537601 MS.gene49906:CDS
AAAACTATATCCAACAATGA+AGG 0.561439 6.4:+58535069 MS.gene49906:CDS
AAGAACTTGTAACATCTGGT+TGG 0.564340 6.4:+58537595 MS.gene49906:CDS
TTAACTGTGTTGAATACGAT+AGG 0.567618 6.4:+58535713 MS.gene49906:CDS
TCAATGAAAGGCGGTGGTGG+TGG 0.568001 6.4:+58532265 MS.gene49906:CDS
ACAAGTTCTTGTTGTTCAAG+AGG 0.570038 6.4:-58537582 None:intergenic
TCTTGTAAATGCAGAGCTGT+GGG 0.571185 6.4:+58537155 MS.gene49906:CDS
AAGATTATGTAGATCTTCAC+CGG 0.577973 6.4:-58535257 None:intergenic
ATGTCAATGAAAGGCGGTGG+TGG 0.580766 6.4:+58532262 MS.gene49906:CDS
CTGGAAGAATTTGAAACGTG+TGG 0.581704 6.4:+58532405 MS.gene49906:CDS
AAGGTCTAAACAGAGGATTA+GGG 0.590676 6.4:+58534834 MS.gene49906:CDS
ATTGGCTGGACCTGGACAGT+GGG 0.592025 6.4:+58534904 MS.gene49906:CDS
ACGTGTGGCGGGGAAAGCAT+GGG 0.593925 6.4:+58532420 MS.gene49906:CDS
CTCATGTCAATGAAAGGCGG+TGG 0.597201 6.4:+58532259 MS.gene49906:CDS
AGATGTGAAGACAAAGATGC+TGG 0.600579 6.4:-58537390 None:intergenic
ACTAAAGTTCTACGTGAACT+CGG 0.602116 6.4:+58537027 MS.gene49906:CDS
AGAATTTGAAACGTGTGGCG+GGG 0.614282 6.4:+58532410 MS.gene49906:CDS
GAAGAATTTGAAACGTGTGG+CGG 0.621262 6.4:+58532408 MS.gene49906:CDS
TTTATGGTCATGGCTATGCA+TGG 0.621553 6.4:+58536034 MS.gene49906:CDS
GGCTAGGCTACAAAACCTTG+TGG 0.623864 6.4:+58537518 MS.gene49906:CDS
TTAGGGACTTTATCAGCTGG+AGG 0.624926 6.4:+58534851 MS.gene49906:CDS
CATGATGCAATCTTCTCACA+GGG 0.626037 6.4:+58532186 None:intergenic
TAACTGTGTTGAATACGATA+GGG 0.627098 6.4:+58535714 MS.gene49906:CDS
TGCATATATCCAATATGGGC+CGG 0.627717 6.4:+58535238 MS.gene49906:CDS
AATTGGCTGGACCTGGACAG+TGG 0.630767 6.4:+58534903 MS.gene49906:CDS
TTAAAGTAAGTGGAGCACTC+AGG 0.643732 6.4:+58536002 MS.gene49906:CDS
TCTGATGATGTGGTTTACAG+CGG 0.646018 6.4:+58535766 MS.gene49906:CDS
GCAGGAGCAACTCTTAGCAA+AGG 0.647124 6.4:+58534815 MS.gene49906:intron
AGATGGGTGTGTCTGATCCA+AGG 0.649272 6.4:+58532443 MS.gene49906:CDS
ATTCTTCAAAAGAATCCACA+AGG 0.658164 6.4:-58537533 None:intergenic
AATAGGTGATCAAGAACACA+CGG 0.669501 6.4:-58535108 None:intergenic
CTTAGCAAAGGTCTAAACAG+AGG 0.672271 6.4:+58534827 MS.gene49906:CDS
AAACTCATGTCAATGAAAGG+CGG 0.695753 6.4:+58532256 MS.gene49906:CDS
CCTGTGAGAAGATTGCATCA+TGG 0.710798 6.4:-58532185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAATAA+AGG + chr6.4:58534035-58534054 MS.gene49906:intron 0.0%
!! ATATTATATAATATATGTAG+GGG + chr6.4:58532907-58532926 MS.gene49906:intron 10.0%
!! ATGAAGAAATAAATAAATAA+AGG + chr6.4:58533947-58533966 MS.gene49906:intron 10.0%
!! GAATATTATATAATATATGT+AGG + chr6.4:58532905-58532924 MS.gene49906:intron 10.0%
!! GTAAATAAATAAATAAGTAA+AGG + chr6.4:58533989-58534008 MS.gene49906:intron 10.0%
!! TATTATTTGTTTATTTAAAG+TGG + chr6.4:58533314-58533333 MS.gene49906:intron 10.0%
!! TTACTTATTTATTTATTTAC+TGG - chr6.4:58533989-58534008 None:intergenic 10.0%
!! TTTGAAAACTAAAAAATAAT+TGG - chr6.4:58533746-58533765 None:intergenic 10.0%
!!! TATTTTATCAAATTATTACA+CGG + chr6.4:58532721-58532740 MS.gene49906:intron 10.0%
!!! TATTTTATTTTTGCTTATAT+AGG + chr6.4:58533220-58533239 MS.gene49906:intron 10.0%
!! AAAAATTATGTTAAAGTAAG+TGG + chr6.4:58535992-58536011 MS.gene49906:CDS 15.0%
!! AAATTAAACAACATTAACAT+AGG - chr6.4:58534109-58534128 None:intergenic 15.0%
!! AAATTTAAATACTAATCAAG+TGG - chr6.4:58536870-58536889 None:intergenic 15.0%
!! AATGCATCTAATTTAAATTA+GGG - chr6.4:58533183-58533202 None:intergenic 15.0%
!! ATTAAAATTTACAACATTTG+AGG + chr6.4:58535353-58535372 MS.gene49906:intron 15.0%
!! CTAAAAATAGAAACAAATTT+CGG - chr6.4:58533530-58533549 None:intergenic 15.0%
!! TACTTATTATGAAGTATATA+CGG - chr6.4:58536583-58536602 None:intergenic 15.0%
!! TTTCACTTATAAACAATAAT+TGG + chr6.4:58534777-58534796 MS.gene49906:intron 15.0%
!!! AATCATATATATGTTTGTTA+CGG - chr6.4:58532687-58532706 None:intergenic 15.0%
!!! ATTATTAGTTAGTTTAATAG+TGG - chr6.4:58533646-58533665 None:intergenic 15.0%
!!! ATTTTATCAAATTATTACAC+GGG + chr6.4:58532722-58532741 MS.gene49906:intron 15.0%
!!! TTATTTTATTAGGTTTACTT+AGG + chr6.4:58534688-58534707 MS.gene49906:intron 15.0%
!! AAACTAAATGTTATAGTAGA+TGG - chr6.4:58535622-58535641 None:intergenic 20.0%
!! AATAAGTAAGAAAAGTCTAT+TGG - chr6.4:58535330-58535349 None:intergenic 20.0%
!! ACCAATTGAATACTATTAAA+TGG - chr6.4:58534241-58534260 None:intergenic 20.0%
!! ATAAAATCATTCCAAGTTTA+AGG - chr6.4:58534542-58534561 None:intergenic 20.0%
!! ATAAGTAAGAAAAGTCTATT+GGG - chr6.4:58535329-58535348 None:intergenic 20.0%
!! ATACATGTATCTTTACTATT+TGG + chr6.4:58536739-58536758 MS.gene49906:intron 20.0%
!! ATTTGTACTTTACAATCAAT+AGG - chr6.4:58536341-58536360 None:intergenic 20.0%
!! CAATGCATCTAATTTAAATT+AGG - chr6.4:58533184-58533203 None:intergenic 20.0%
!! CAATTATATCATTATGTATG+TGG + chr6.4:58536536-58536555 MS.gene49906:intron 20.0%
!! GTTTAATTGTTTCAAATCTA+AGG + chr6.4:58537626-58537645 MS.gene49906:CDS 20.0%
!! TAGATGGTTATTACAAATTA+AGG - chr6.4:58535606-58535625 None:intergenic 20.0%
!! TCCATTTAATAGTATTCAAT+TGG + chr6.4:58534237-58534256 MS.gene49906:intron 20.0%
!! TTACTACAGTCAAAAAAATT+TGG - chr6.4:58533476-58533495 None:intergenic 20.0%
!!! ACTTTAACATAATTTTTCCA+TGG - chr6.4:58535989-58536008 None:intergenic 20.0%
!!! ATAACTTAAAGTTTCTTTTC+AGG + chr6.4:58535673-58535692 MS.gene49906:intron 20.0%
!!! CAAACTGGTTTTATTTTATT+AGG + chr6.4:58534678-58534697 MS.gene49906:intron 20.0%
!!! TCTACTATAACATTTAGTTT+TGG + chr6.4:58535622-58535641 MS.gene49906:intron 20.0%
!!! TTAGTTTTCAAAATTACAAG+TGG + chr6.4:58533754-58533773 MS.gene49906:intron 20.0%
! AAAACTATATCCAACAATGA+AGG + chr6.4:58535069-58535088 MS.gene49906:CDS 25.0%
! AATAAGCTGAAAATAGCTTA+TGG - chr6.4:58535450-58535469 None:intergenic 25.0%
! ACAAAATGTTTAGATATCCA+TGG + chr6.4:58535969-58535988 MS.gene49906:CDS 25.0%
! ACAATGCATTATTATATGCA+GGG + chr6.4:58533380-58533399 MS.gene49906:intron 25.0%
! AGATACAATAACGTAACAAT+AGG - chr6.4:58535128-58535147 None:intergenic 25.0%
! ATCAAATTCAAGGAGATATA+TGG + chr6.4:58536431-58536450 MS.gene49906:intron 25.0%
! ATTGCGAATGTTTCTTTATT+TGG - chr6.4:58533270-58533289 None:intergenic 25.0%
! GTATCCTTAAAAATGTCTTA+AGG - chr6.4:58533029-58533048 None:intergenic 25.0%
! TAATAGTATTCAATTGGTGA+TGG + chr6.4:58534243-58534262 MS.gene49906:intron 25.0%
! TATTGTTACGTTATTGTATC+TGG + chr6.4:58535127-58535146 MS.gene49906:CDS 25.0%
! TTAATTAGCAAATTTGACCA+TGG + chr6.4:58534062-58534081 MS.gene49906:intron 25.0%
! TTATATAATATATGTAGGGG+CGG + chr6.4:58532910-58532929 MS.gene49906:intron 25.0%
!! AAACTTGATGAAAGGTTTTT+AGG - chr6.4:58534721-58534740 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAG+AGG + chr6.4:58535579-58535598 MS.gene49906:intron 25.0%
!! GTTTTTCCTATAAAGCAAAA+CGG - chr6.4:58536309-58536328 None:intergenic 25.0%
!!! ATCACTTTTGATTGAATTTG+TGG + chr6.4:58537497-58537516 MS.gene49906:CDS 25.0%
!!! ATGTATACTTTCTGAAATAC+AGG + chr6.4:58536057-58536076 MS.gene49906:CDS 25.0%
!!! GTTTAATTTGACCTTAAACT+TGG + chr6.4:58534528-58534547 MS.gene49906:intron 25.0%
!!! TGAGTTTTTCCTTTTTTTCA+AGG - chr6.4:58532243-58532262 None:intergenic 25.0%
!!! TTATGTCTAGATAGTTTGTT+TGG - chr6.4:58533615-58533634 None:intergenic 25.0%
AAGATTATGTAGATCTTCAC+CGG - chr6.4:58535260-58535279 None:intergenic 30.0%
ACAATGAAGGCTTATGAATA+TGG + chr6.4:58535082-58535101 MS.gene49906:CDS 30.0%
ACAGTCAAAAAAATTTGGAC+AGG - chr6.4:58533471-58533490 None:intergenic 30.0%
ACCTTATAAGGTGAATAAGT+GGG - chr6.4:58533428-58533447 None:intergenic 30.0%
ACTTTACAATCAATAGGAAC+TGG - chr6.4:58536335-58536354 None:intergenic 30.0%
AGCAGGTTTAATGATGTTAT+CGG - chr6.4:58537337-58537356 None:intergenic 30.0%
AGCATACTATCAGAAAAACA+AGG - chr6.4:58535017-58535036 None:intergenic 30.0%
AGGTATAAGCTAAGGAAAAA+AGG - chr6.4:58534997-58535016 None:intergenic 30.0%
AGTTAGAGTTCCAAAAAGTT+GGG + chr6.4:58537293-58537312 MS.gene49906:CDS 30.0%
ATGTGTGCATATATCCAATA+TGG + chr6.4:58535233-58535252 MS.gene49906:CDS 30.0%
ATTCTTCAAAAGAATCCACA+AGG - chr6.4:58537536-58537555 None:intergenic 30.0%
CAATGCATTATTATATGCAG+GGG + chr6.4:58533381-58533400 MS.gene49906:intron 30.0%
CAGATATATATTAGCGCTAT+AGG - chr6.4:58536824-58536843 None:intergenic 30.0%
CGGTAACAAAGTTAAAAAGA+TGG + chr6.4:58537047-58537066 MS.gene49906:CDS 30.0%
CTCCTTGAATTTGATATGAA+GGG - chr6.4:58536426-58536445 None:intergenic 30.0%
CTGATAACTTGAGTAGAAAA+AGG - chr6.4:58535841-58535860 None:intergenic 30.0%
CTTGTTGCAAAAAATTTCAC+AGG + chr6.4:58535277-58535296 MS.gene49906:CDS 30.0%
CTTTACAATCAATAGGAACT+GGG - chr6.4:58536334-58536353 None:intergenic 30.0%
GAAAAACAAGGTATAAGCTA+AGG - chr6.4:58535005-58535024 None:intergenic 30.0%
GAAAAACTCATGTCAATGAA+AGG + chr6.4:58532253-58532272 MS.gene49906:CDS 30.0%
GACAATGCATTATTATATGC+AGG + chr6.4:58533379-58533398 MS.gene49906:intron 30.0%
GTTAAAAAGATGGAGAAACT+AGG + chr6.4:58537057-58537076 MS.gene49906:CDS 30.0%
TAACTGTGTTGAATACGATA+GGG + chr6.4:58535714-58535733 MS.gene49906:CDS 30.0%
TAAGTAACTAGAATACTGCT+AGG + chr6.4:58536597-58536616 MS.gene49906:intron 30.0%
TAATCCAATTGTGAGAATGA+TGG + chr6.4:58533862-58533881 MS.gene49906:intron 30.0%
TAATGAACTAGCACTTTCAT+AGG - chr6.4:58537460-58537479 None:intergenic 30.0%
TAGAAACAAATTTCGGTTCA+TGG - chr6.4:58533523-58533542 None:intergenic 30.0%
TAGTAAACGTGTATTTGCAT+AGG - chr6.4:58536926-58536945 None:intergenic 30.0%
TATCGTATTCAACACAGTTA+AGG - chr6.4:58535714-58535733 None:intergenic 30.0%
TATTCATAAGCCTTCATTGT+TGG - chr6.4:58535082-58535101 None:intergenic 30.0%
TCACAGTTTCCTTGAAAAAA+AGG + chr6.4:58532231-58532250 MS.gene49906:CDS 30.0%
TCCTTGAATTTGATATGAAG+GGG - chr6.4:58536425-58536444 None:intergenic 30.0%
TCTCCTTGAATTTGATATGA+AGG - chr6.4:58536427-58536446 None:intergenic 30.0%
TGAAAAACACAGTCAATCAA+TGG + chr6.4:58533672-58533691 MS.gene49906:intron 30.0%
TGTGTGCATATATCCAATAT+GGG + chr6.4:58535234-58535253 MS.gene49906:CDS 30.0%
TTAACTGTGTTGAATACGAT+AGG + chr6.4:58535713-58535732 MS.gene49906:CDS 30.0%
TTACAAATTAAGGTCCTCTT+TGG - chr6.4:58535596-58535615 None:intergenic 30.0%
TTTCTTCATCCATTTGTAAG+AGG - chr6.4:58537221-58537240 None:intergenic 30.0%
! AAACCTCCTTTTTGTGAAAT+AGG + chr6.4:58536945-58536964 MS.gene49906:intron 30.0%
! AGATTTTCTTCCCAACTTTT+TGG - chr6.4:58537306-58537325 None:intergenic 30.0%
! AGTGCCTTAAGACATTTTTA+AGG + chr6.4:58533022-58533041 MS.gene49906:intron 30.0%
! ATCTAACCGTTTTGCTTTAT+AGG + chr6.4:58536300-58536319 MS.gene49906:intron 30.0%
! CAAACTCGATTTGTAAATTG+AGG - chr6.4:58534504-58534523 None:intergenic 30.0%
! CTTTCATCAAGTTTTCCATT+GGG + chr6.4:58534727-58534746 MS.gene49906:intron 30.0%
! TAGTATGCTATGTGATTTGT+AGG + chr6.4:58535028-58535047 MS.gene49906:intron 30.0%
! TGATACGTAAGAATTTTCGA+TGG - chr6.4:58535742-58535761 None:intergenic 30.0%
! TTATTCCATACATTTGAGAC+CGG - chr6.4:58532840-58532859 None:intergenic 30.0%
! TTGTGATAGTAGTTTGTAAC+AGG + chr6.4:58536508-58536527 MS.gene49906:intron 30.0%
! TTTCCTAAACATGTTTTCGT+CGG - chr6.4:58537370-58537389 None:intergenic 30.0%
!! AATAGTGTGAGTTAGTTTGT+TGG - chr6.4:58533583-58533602 None:intergenic 30.0%
!! ATCACAACTTTTGAGAATGA+TGG + chr6.4:58533833-58533852 MS.gene49906:intron 30.0%
!! CTGATTATTCTAGAATCACT+TGG + chr6.4:58534141-58534160 MS.gene49906:intron 30.0%
!! GTGGATTCTTTTGAAGAATT+AGG + chr6.4:58537537-58537556 MS.gene49906:CDS 30.0%
!! TGGATATAGTTTTGCATATG+TGG - chr6.4:58535062-58535081 None:intergenic 30.0%
!! TTTGATTCTTCCACTTTTGT+TGG - chr6.4:58537435-58537454 None:intergenic 30.0%
!! TTTGATTTCTAAAGCTCAGT+TGG + chr6.4:58533353-58533372 MS.gene49906:intron 30.0%
!! TTTTGATTGAATTTGTGGCT+AGG + chr6.4:58537502-58537521 MS.gene49906:CDS 30.0%
!!! TTTTTTCAAGGAAACTGTGA+CGG - chr6.4:58532231-58532250 None:intergenic 30.0%
AAACGTGTATTTGCATAGGT+TGG - chr6.4:58536922-58536941 None:intergenic 35.0%
AAACTCATGTCAATGAAAGG+CGG + chr6.4:58532256-58532275 MS.gene49906:CDS 35.0%
AAAGGTCTAAACAGAGGATT+AGG + chr6.4:58534833-58534852 MS.gene49906:CDS 35.0%
AAATGCTAATAAGTGCCCTA+AGG - chr6.4:58533160-58533179 None:intergenic 35.0%
AAGAACTTGTAACATCTGGT+TGG + chr6.4:58537595-58537614 MS.gene49906:CDS 35.0%
AAGGTCTAAACAGAGGATTA+GGG + chr6.4:58534834-58534853 MS.gene49906:CDS 35.0%
AATAGGTGATCAAGAACACA+CGG - chr6.4:58535111-58535130 None:intergenic 35.0%
AATGCTAATAAGTGCCCTAA+GGG - chr6.4:58533159-58533178 None:intergenic 35.0%
ACAAATCGGTATTCCTTTAC+CGG + chr6.4:58532303-58532322 MS.gene49906:intron 35.0%
ACAATCTTCACCTTACAAGT+TGG + chr6.4:58534460-58534479 MS.gene49906:intron 35.0%
ACACTCAATGCATCGAAAAT+TGG - chr6.4:58533092-58533111 None:intergenic 35.0%
ACCACAGATTGCAGAAAATA+GGG + chr6.4:58536645-58536664 MS.gene49906:intron 35.0%
ACTAAAGTTCTACGTGAACT+CGG + chr6.4:58537027-58537046 MS.gene49906:CDS 35.0%
AGGTGAGAAAGCAAAGTTTA+AGG + chr6.4:58537557-58537576 MS.gene49906:CDS 35.0%
AGTGGGAAGTAGAAAATTTG+TGG + chr6.4:58533797-58533816 MS.gene49906:intron 35.0%
ATACTAATCAAGTGGTGCAA+AGG - chr6.4:58536862-58536881 None:intergenic 35.0%
ATCAAATTATTACACGGGTG+AGG + chr6.4:58532727-58532746 MS.gene49906:intron 35.0%
ATCACCATCATTCTCACAAT+TGG - chr6.4:58533869-58533888 None:intergenic 35.0%
ATGGTTAGCATCTTCATTGT+AGG + chr6.4:58534941-58534960 MS.gene49906:CDS 35.0%
ATTAGCAAATTTGACCATGG+TGG + chr6.4:58534065-58534084 MS.gene49906:intron 35.0%
ATTGGGAATGCTGTCAAAAT+TGG + chr6.4:58534886-58534905 MS.gene49906:CDS 35.0%
ATTGTATCTGGATATCGAAC+CGG + chr6.4:58535139-58535158 MS.gene49906:CDS 35.0%
CAACAAGAACTTGTAACATC+TGG + chr6.4:58537591-58537610 MS.gene49906:CDS 35.0%
CAAGAATCAAACGTCATTTC+TGG - chr6.4:58536238-58536257 None:intergenic 35.0%
CACCTTATAAGGTGAATAAG+TGG - chr6.4:58533429-58533448 None:intergenic 35.0%
CACTGTTGTAGTGTCTTAAT+CGG + chr6.4:58532766-58532785 MS.gene49906:intron 35.0%
CAGAAATGACGTTTGATTCT+TGG + chr6.4:58536236-58536255 MS.gene49906:intron 35.0%
CAGTTAGAGTTCCAAAAAGT+TGG + chr6.4:58537292-58537311 MS.gene49906:CDS 35.0%
CATAGAAAATGTTGCTACAC+AGG - chr6.4:58536085-58536104 None:intergenic 35.0%
CCAATGGAAAACTTGATGAA+AGG - chr6.4:58534729-58534748 None:intergenic 35.0%
CCTTATAAGGTGAATAAGTG+GGG - chr6.4:58533427-58533446 None:intergenic 35.0%
CCTTGAATTTGATATGAAGG+GGG - chr6.4:58536424-58536443 None:intergenic 35.0%
CTACTATCACAATCCTATAC+AGG - chr6.4:58536500-58536519 None:intergenic 35.0%
GAAAATATGCTCTTCAACCA+TGG + chr6.4:58534166-58534185 MS.gene49906:intron 35.0%
GAAGTTCACACTTTACAAAC+TGG + chr6.4:58534663-58534682 MS.gene49906:intron 35.0%
GATCTATTCAAGCCATATGT+CGG - chr6.4:58534606-58534625 None:intergenic 35.0%
GCAGGTTTAATGATGTTATC+GGG - chr6.4:58537336-58537355 None:intergenic 35.0%
GCTTAGTACTAAATCACGTA+TGG + chr6.4:58536763-58536782 MS.gene49906:intron 35.0%
GTCAAAAAAATTTGGACAGG+TGG - chr6.4:58533468-58533487 None:intergenic 35.0%
GTGGGAAGAAATTGTAATCA+TGG + chr6.4:58534922-58534941 MS.gene49906:CDS 35.0%
TAGTACTAAATCACGTATGG+CGG + chr6.4:58536766-58536785 MS.gene49906:intron 35.0%
TGAGAAACATTCTCGTTTCT+TGG - chr6.4:58537195-58537214 None:intergenic 35.0%
TGGCTAGAATTCACCTTATA+AGG - chr6.4:58533440-58533459 None:intergenic 35.0%
TTACCGACGAAAACATGTTT+AGG + chr6.4:58537364-58537383 MS.gene49906:CDS 35.0%
TTACCTTCTTAAGCTCTTTG+CGG - chr6.4:58536996-58537015 None:intergenic 35.0%
TTAGCAAATTTGACCATGGT+GGG + chr6.4:58534066-58534085 MS.gene49906:intron 35.0%
TTCTCAAGACCTCTTACAAA+TGG + chr6.4:58537209-58537228 MS.gene49906:CDS 35.0%
TTGCTTATATAGGAGACTAG+AGG + chr6.4:58533230-58533249 MS.gene49906:intron 35.0%
! AACATTTTGTAACGACCATG+AGG - chr6.4:58535959-58535978 None:intergenic 35.0%
! AGACATTCGATCAGAAGTAT+CGG - chr6.4:58532648-58532667 None:intergenic 35.0%
! AGATTTTTGCTCATTGCTCT+TGG + chr6.4:58535187-58535206 MS.gene49906:CDS 35.0%
! AGCAAAACGGTTAGATTTTG+TGG - chr6.4:58536296-58536315 None:intergenic 35.0%
! ATTGGTGGCTATTCACAAAT+CGG + chr6.4:58532289-58532308 MS.gene49906:CDS 35.0%
! CCTTTCATCAAGTTTTCCAT+TGG + chr6.4:58534726-58534745 MS.gene49906:intron 35.0%
! TTTGTGTTTTCAGCGAAGAT+GGG + chr6.4:58532469-58532488 MS.gene49906:CDS 35.0%
!! ACAAGTTCTTGTTGTTCAAG+AGG - chr6.4:58537585-58537604 None:intergenic 35.0%
!! ATTTCTAAAGCTCAGTTGGT+AGG + chr6.4:58533357-58533376 MS.gene49906:intron 35.0%
!! CAAGTTCTTGTTGTTCAAGA+GGG - chr6.4:58537584-58537603 None:intergenic 35.0%
!! GAAGATGAGTTTTGCTATCT+GGG + chr6.4:58535928-58535947 MS.gene49906:intron 35.0%
!! TCGTATTGACTTACTTCATC+CGG + chr6.4:58532818-58532837 MS.gene49906:intron 35.0%
!!! GATGAAAGGTTTTTAGGTTC+TGG - chr6.4:58534715-58534734 None:intergenic 35.0%
AAACAACCGTTTCCAGATGT+TGG + chr6.4:58532529-58532548 MS.gene49906:CDS 40.0%
AACAACCGTTTCCAGATGTT+GGG + chr6.4:58532530-58532549 MS.gene49906:CDS 40.0%
ACGTAGAACTTTAGTCGCTT+CGG - chr6.4:58537022-58537041 None:intergenic 40.0%
AGAAGATGCACCAACAAAAG+TGG + chr6.4:58537422-58537441 MS.gene49906:CDS 40.0%
AGACACTACAACAGTGTCAT+TGG - chr6.4:58532762-58532781 None:intergenic 40.0%
AGATGTGAAGACAAAGATGC+TGG - chr6.4:58537393-58537412 None:intergenic 40.0%
ATAAGTCGTTCTCGTAAGCT+CGG - chr6.4:58535420-58535439 None:intergenic 40.0%
ATTATTATATGCAGGGGCTG+GGG + chr6.4:58533387-58533406 MS.gene49906:intron 40.0%
CATATGACAAGTCCGACATA+TGG + chr6.4:58534591-58534610 MS.gene49906:intron 40.0%
CATTATTATATGCAGGGGCT+GGG + chr6.4:58533386-58533405 MS.gene49906:intron 40.0%
CCACAGATTGCAGAAAATAG+GGG + chr6.4:58536646-58536665 MS.gene49906:intron 40.0%
CCCCACTTATTCACCTTATA+AGG + chr6.4:58533424-58533443 MS.gene49906:intron 40.0%
CCCCCTTCATATCAAATTCA+AGG + chr6.4:58536421-58536440 MS.gene49906:intron 40.0%
CGCTTTACAACCAACTTGTA+AGG - chr6.4:58534473-58534492 None:intergenic 40.0%
CGTGTCATAGTATCAAACCT+GGG - chr6.4:58534195-58534214 None:intergenic 40.0%
CTGGAGCCTATTTCACAAAA+AGG - chr6.4:58536954-58536973 None:intergenic 40.0%
CTTAGCAAAGGTCTAAACAG+AGG + chr6.4:58534827-58534846 MS.gene49906:CDS 40.0%
GACCACAGATTGCAGAAAAT+AGG + chr6.4:58536644-58536663 MS.gene49906:intron 40.0%
GAGCCTATTTCACAAAAAGG+AGG - chr6.4:58536951-58536970 None:intergenic 40.0%
GCATTGTGCATTTATGGTCA+TGG + chr6.4:58536024-58536043 MS.gene49906:CDS 40.0%
GCTGAAAACACAAACTTCCT+TGG - chr6.4:58532463-58532482 None:intergenic 40.0%
GCTTAGTGCTAAATCACGTA+TGG + chr6.4:58536707-58536726 MS.gene49906:intron 40.0%
GGATGAAGAAAGACAGTTCT+TGG + chr6.4:58537230-58537249 MS.gene49906:CDS 40.0%
GTAACTAGAATACTGCTAGG+TGG + chr6.4:58536600-58536619 MS.gene49906:intron 40.0%
GTGAATAACTGTAGTGTCAG+AGG - chr6.4:58532944-58532963 None:intergenic 40.0%
GTGCTAAACTAGAGATGTTG+CGG + chr6.4:58536453-58536472 MS.gene49906:intron 40.0%
TAAGGTGAATTCTAGCCACT+AGG + chr6.4:58533442-58533461 MS.gene49906:intron 40.0%
TACAAGCACAGAAGATGCAT+TGG + chr6.4:58535810-58535829 MS.gene49906:CDS 40.0%
TACTTCCCAACATCTGGAAA+CGG - chr6.4:58532538-58532557 None:intergenic 40.0%
TAGTGCTAAATCACGTATGG+CGG + chr6.4:58536710-58536729 MS.gene49906:intron 40.0%
TCTTGTAAATGCAGAGCTGT+GGG + chr6.4:58537155-58537174 MS.gene49906:CDS 40.0%
TGCATATATCCAATATGGGC+CGG + chr6.4:58535238-58535257 MS.gene49906:CDS 40.0%
TGCTAAACTAGAGATGTTGC+GGG + chr6.4:58536454-58536473 MS.gene49906:intron 40.0%
TGCTGTATGAAGAAAGTCTC+CGG - chr6.4:58535161-58535180 None:intergenic 40.0%
TGGTCACAATATATCTGTGC+AGG + chr6.4:58534797-58534816 MS.gene49906:intron 40.0%
TTCATCCGGTCTCAAATGTA+TGG + chr6.4:58532832-58532851 MS.gene49906:intron 40.0%
TTCTTGTAAATGCAGAGCTG+TGG + chr6.4:58537154-58537173 MS.gene49906:CDS 40.0%
TTGTAACATCTGGTTGGACT+AGG + chr6.4:58537601-58537620 MS.gene49906:CDS 40.0%
TTTATGGTCATGGCTATGCA+TGG + chr6.4:58536034-58536053 MS.gene49906:CDS 40.0%
TTTCCGCAAAGAGCTTAAGA+AGG + chr6.4:58536990-58537009 MS.gene49906:CDS 40.0%
! AACAATTTTCTGTCCCACCA+TGG - chr6.4:58534082-58534101 None:intergenic 40.0%
! AAGAATTTGAAACGTGTGGC+GGG + chr6.4:58532409-58532428 MS.gene49906:CDS 40.0%
! ACAACATTTGAGGCCTGTTT+GGG + chr6.4:58535363-58535382 MS.gene49906:intron 40.0%
! ACTCAGGCATTGTGCATTTA+TGG + chr6.4:58536018-58536037 MS.gene49906:CDS 40.0%
! ATTTTGTAACGACCATGAGG+TGG - chr6.4:58535956-58535975 None:intergenic 40.0%
! CGTTTCGAGGATTTTCAGAT+GGG + chr6.4:58532371-58532390 MS.gene49906:intron 40.0%
! CTGGAAGAATTTGAAACGTG+TGG + chr6.4:58532405-58532424 MS.gene49906:CDS 40.0%
! GAAGAATTTGAAACGTGTGG+CGG + chr6.4:58532408-58532427 MS.gene49906:CDS 40.0%
! GCGTTTGTGTGTTGTTGATT+CGG + chr6.4:58535906-58535925 MS.gene49906:intron 40.0%
! GTATCAAGCTTCTGATGATG+TGG + chr6.4:58535756-58535775 MS.gene49906:CDS 40.0%
! GTCGTCTTTGAGTTCAGTAT+AGG + chr6.4:58532586-58532605 MS.gene49906:CDS 40.0%
! GTTTGTGTTTTCAGCGAAGA+TGG + chr6.4:58532468-58532487 MS.gene49906:CDS 40.0%
! TACAACATTTGAGGCCTGTT+TGG + chr6.4:58535362-58535381 MS.gene49906:intron 40.0%
! TACTTGTCTTGTTGACCCAA+TGG - chr6.4:58534745-58534764 None:intergenic 40.0%
! TCGTTTCGAGGATTTTCAGA+TGG + chr6.4:58532370-58532389 MS.gene49906:intron 40.0%
! TCTGATGATGTGGTTTACAG+CGG + chr6.4:58535766-58535785 MS.gene49906:CDS 40.0%
! TGTTTGTTACGGTGTCAAAC+CGG - chr6.4:58532676-58532695 None:intergenic 40.0%
! TTAAAGTAAGTGGAGCACTC+AGG + chr6.4:58536002-58536021 MS.gene49906:CDS 40.0%
! TTTTGTGAAATAGGCTCCAG+CGG + chr6.4:58536954-58536973 MS.gene49906:intron 40.0%
!! AGTTCTTAAAGAGTGCCCTT+AGG + chr6.4:58533141-58533160 MS.gene49906:intron 40.0%
!! ATGTTGGGAAGTACTCTGTT+TGG + chr6.4:58532545-58532564 MS.gene49906:CDS 40.0%
!! ATTGGTGATGGTGAAATCAC+AGG + chr6.4:58534255-58534274 MS.gene49906:intron 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG - chr6.4:58535485-58535504 None:intergenic 40.0%
!! GGAAGATGAGTTTTGCTATC+TGG + chr6.4:58535927-58535946 MS.gene49906:intron 40.0%
!! GTTCTTAAAGAGTGCCCTTA+GGG + chr6.4:58533142-58533161 MS.gene49906:intron 40.0%
!! TGTTGGGAAGTACTCTGTTT+GGG + chr6.4:58532546-58532565 MS.gene49906:CDS 40.0%
AAAACTTGTCTCTTCTCCGC+TGG - chr6.4:58536973-58536992 None:intergenic 45.0%
AAGCTATCCTGGTGAGCTTA+TGG - chr6.4:58535474-58535493 None:intergenic 45.0%
AATGCAGAGCTGTGGGAAAT+CGG + chr6.4:58537162-58537181 MS.gene49906:CDS 45.0%
AATGTAGTCATCGTCGTCGT+CGG - chr6.4:58532332-58532351 None:intergenic 45.0%
ACAATTTCTTCCCACTGTCC+AGG - chr6.4:58534917-58534936 None:intergenic 45.0%
ACGACACAAACACGGTTACA+TGG - chr6.4:58532795-58532814 None:intergenic 45.0%
ATGTCGGACTTGTCATATGC+TGG - chr6.4:58534590-58534609 None:intergenic 45.0%
ATTTGATATGAAGGGGGCTG+AGG - chr6.4:58536418-58536437 None:intergenic 45.0%
CTGATCGAATGTCTGTGTTC+CGG + chr6.4:58532654-58532673 MS.gene49906:intron 45.0%
CTTATTGCCATAAGCTCACC+AGG + chr6.4:58535464-58535483 MS.gene49906:intron 45.0%
GCATTATTATATGCAGGGGC+TGG + chr6.4:58533385-58533404 MS.gene49906:intron 45.0%
GCGTGTCATAGTATCAAACC+TGG - chr6.4:58534196-58534215 None:intergenic 45.0%
GGAATGCTGTCAAAATTGGC+TGG + chr6.4:58534890-58534909 MS.gene49906:CDS 45.0%
GGATTAGGGACTTTATCAGC+TGG + chr6.4:58534848-58534867 MS.gene49906:CDS 45.0%
GGCGTAGCAACATCATTAGA+AGG + chr6.4:58535298-58535317 MS.gene49906:CDS 45.0%
GGGCTGAGGATAACAAAAAG+GGG - chr6.4:58536404-58536423 None:intergenic 45.0%
GGGGCTGAGGATAACAAAAA+GGG - chr6.4:58536405-58536424 None:intergenic 45.0%
TACGAAGCACGACACAAACA+CGG - chr6.4:58532803-58532822 None:intergenic 45.0%
TCCATAGTCAACGCAGAACA+TGG - chr6.4:58534410-58534429 None:intergenic 45.0%
TCGTCGGTAACAACATTAGC+AGG - chr6.4:58537354-58537373 None:intergenic 45.0%
TGACGGAAGGAACCCAATTT+GGG - chr6.4:58532214-58532233 None:intergenic 45.0%
TTAGGGACTTTATCAGCTGG+AGG + chr6.4:58534851-58534870 MS.gene49906:CDS 45.0%
! ACAGAGTACTTCCCAACATC+TGG - chr6.4:58532544-58532563 None:intergenic 45.0%
! ACGCCTTTAATCTGAAGCGT+CGG + chr6.4:58536189-58536208 MS.gene49906:intron 45.0%
! AGAATTTGAAACGTGTGGCG+GGG + chr6.4:58532410-58532429 MS.gene49906:CDS 45.0%
! AGGATTTTCAGATGGGATCG+TGG + chr6.4:58532378-58532397 MS.gene49906:intron 45.0%
! CACTACAACAGTGTCATTGG+TGG - chr6.4:58532759-58532778 None:intergenic 45.0%
! CCCCTATTTTCTGCAATCTG+TGG - chr6.4:58536649-58536668 None:intergenic 45.0%
! CTTCAGATTAAAGGCGTGTC+TGG - chr6.4:58536186-58536205 None:intergenic 45.0%
! GGAGGACTTGCTTTAGCATT+GGG + chr6.4:58534869-58534888 MS.gene49906:CDS 45.0%
! GTACCGACGCTTCAGATTAA+AGG - chr6.4:58536195-58536214 None:intergenic 45.0%
! TCTCACAGGGTACCCAAATT+GGG + chr6.4:58532199-58532218 MS.gene49906:CDS 45.0%
! TGGAGGACTTGCTTTAGCAT+TGG + chr6.4:58534868-58534887 MS.gene49906:CDS 45.0%
! TTCAAGGAAACTGTGACGGA+AGG - chr6.4:58532227-58532246 None:intergenic 45.0%
! TTCTCACAGGGTACCCAAAT+TGG + chr6.4:58532198-58532217 MS.gene49906:CDS 45.0%
!! GTTTTCAGCGAAGATGGGTT+TGG + chr6.4:58532474-58532493 MS.gene49906:CDS 45.0%
!! TCCATGTTCTGCGTTGACTA+TGG + chr6.4:58534406-58534425 MS.gene49906:intron 45.0%
!! AATATTATATAATATATGTA+GGG + chr6.4:58532906-58532925 MS.gene49906:intron 5.0%
!! TTATTTATTTATTTATTTAC+TGG - chr6.4:58534031-58534050 None:intergenic 5.0%
!!! ATTTTTTTTATATAAAAAAG+TGG + chr6.4:58533779-58533798 MS.gene49906:intron 5.0%
!!! TTTTTTTTATATAAAAAAGT+GGG + chr6.4:58533780-58533799 MS.gene49906:intron 5.0%
AATTTGGACAGGTGGCCTAG+TGG - chr6.4:58533460-58533479 None:intergenic 50.0%
AGATCTTCACCGGCCCATAT+TGG - chr6.4:58535250-58535269 None:intergenic 50.0%
AGATGGGTGTGTCTGATCCA+AGG + chr6.4:58532443-58532462 MS.gene49906:CDS 50.0%
AGCTGTGGGAAATCGGTAAC+AGG + chr6.4:58537169-58537188 MS.gene49906:CDS 50.0%
ATGACTACATTCGCCGACGA+CGG + chr6.4:58532341-58532360 MS.gene49906:intron 50.0%
ATGTCAATGAAAGGCGGTGG+TGG + chr6.4:58532262-58532281 MS.gene49906:CDS 50.0%
CTCATGTCAATGAAAGGCGG+TGG + chr6.4:58532259-58532278 MS.gene49906:CDS 50.0%
CTGTCAAAATTGGCTGGACC+TGG + chr6.4:58534896-58534915 MS.gene49906:CDS 50.0%
GAAACGAAAACCACCGTCGT+CGG - chr6.4:58532357-58532376 None:intergenic 50.0%
GCAGGAGCAACTCTTAGCAA+AGG + chr6.4:58534815-58534834 MS.gene49906:intron 50.0%
GCTATGCTGCAGTCGCTATT+TGG + chr6.4:58536683-58536702 MS.gene49906:intron 50.0%
GGCTAGGCTACAAAACCTTG+TGG + chr6.4:58537518-58537537 MS.gene49906:CDS 50.0%
GGGGGCTGAGGATAACAAAA+AGG - chr6.4:58536406-58536425 None:intergenic 50.0%
GGTCAACAACGTCGTGCAAA+GGG - chr6.4:58536628-58536647 None:intergenic 50.0%
GTATCAAACCTGGGTCACCA+TGG - chr6.4:58534186-58534205 None:intergenic 50.0%
TGGTCAACAACGTCGTGCAA+AGG - chr6.4:58536629-58536648 None:intergenic 50.0%
! AGGTGAATAAGTGGGGTGTC+TGG - chr6.4:58533420-58533439 None:intergenic 50.0%
! GCGAGTTTAGCTCAGTTCGT+AGG + chr6.4:58532883-58532902 MS.gene49906:intron 50.0%
! GGTGAATAAGTGGGGTGTCT+GGG - chr6.4:58533419-58533438 None:intergenic 50.0%
! GTGACGGAAGGAACCCAATT+TGG - chr6.4:58532215-58532234 None:intergenic 50.0%
!! CTTGGTGCTGCTGTATCTGT+TGG + chr6.4:58535205-58535224 MS.gene49906:CDS 50.0%
AATTGGCTGGACCTGGACAG+TGG + chr6.4:58534903-58534922 MS.gene49906:CDS 55.0%
ATTGGCTGGACCTGGACAGT+GGG + chr6.4:58534904-58534923 MS.gene49906:CDS 55.0%
CAGATGGGATCGTGGAGTTC+TGG + chr6.4:58532386-58532405 MS.gene49906:intron 55.0%
CTCTTCAACCATGGTGACCC+AGG + chr6.4:58534175-58534194 MS.gene49906:intron 55.0%
GTTTGTGCCAGTGCCCAAAC+AGG - chr6.4:58535379-58535398 None:intergenic 55.0%
TCATCGTCGTCGTCGGATTC+CGG - chr6.4:58532325-58532344 None:intergenic 55.0%
TCGTCGTCGGATTCCGGTAA+AGG - chr6.4:58532319-58532338 None:intergenic 55.0%
! CGACGGTGGTTTTCGTTTCG+AGG + chr6.4:58532358-58532377 MS.gene49906:intron 55.0%
! TCAATGAAAGGCGGTGGTGG+TGG + chr6.4:58532265-58532284 MS.gene49906:CDS 55.0%
! TTTGAGGCCTGTTTGGGCAC+TGG + chr6.4:58535369-58535388 MS.gene49906:intron 55.0%
!! AAAGGCGGTGGTGGTGGTAT+TGG + chr6.4:58532271-58532290 MS.gene49906:CDS 55.0%
ACTACATTCGCCGACGACGG+TGG + chr6.4:58532344-58532363 MS.gene49906:intron 60.0%
GCTATCTGGGAGCCACCTCA+TGG + chr6.4:58535941-58535960 MS.gene49906:CDS 60.0%
! AACGTGTGGCGGGGAAAGCA+TGG + chr6.4:58532419-58532438 MS.gene49906:CDS 60.0%
! ACGTGTGGCGGGGAAAGCAT+GGG + chr6.4:58532420-58532439 MS.gene49906:CDS 60.0%
! GCGGGGAAAGCATGGGAGAT+GGG + chr6.4:58532427-58532446 MS.gene49906:CDS 60.0%
! GGCGGGGAAAGCATGGGAGA+TGG + chr6.4:58532426-58532445 MS.gene49906:CDS 65.0%
!! GGCGGTGGTGGTGGTATTGG+TGG + chr6.4:58532274-58532293 MS.gene49906:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 58532187 58537653 58532187 ID=MS.gene49906
chr6.4 mRNA 58532187 58537653 58532187 ID=MS.gene49906.t1;Parent=MS.gene49906
chr6.4 exon 58532187 58532310 58532187 ID=MS.gene49906.t1.exon1;Parent=MS.gene49906.t1
chr6.4 CDS 58532187 58532310 58532187 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58532389 58532607 58532389 ID=MS.gene49906.t1.exon2;Parent=MS.gene49906.t1
chr6.4 CDS 58532389 58532607 58532389 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58534819 58534962 58534819 ID=MS.gene49906.t1.exon3;Parent=MS.gene49906.t1
chr6.4 CDS 58534819 58534962 58534819 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58535050 58535319 58535050 ID=MS.gene49906.t1.exon4;Parent=MS.gene49906.t1
chr6.4 CDS 58535050 58535319 58535050 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58535695 58535831 58535695 ID=MS.gene49906.t1.exon5;Parent=MS.gene49906.t1
chr6.4 CDS 58535695 58535831 58535695 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58535932 58536078 58535932 ID=MS.gene49906.t1.exon6;Parent=MS.gene49906.t1
chr6.4 CDS 58535932 58536078 58535932 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
chr6.4 exon 58536967 58537653 58536967 ID=MS.gene49906.t1.exon7;Parent=MS.gene49906.t1
chr6.4 CDS 58536967 58537653 58536967 ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1
Gene Sequence

>MS.gene49906

ATGATGCAATCTTCTCACAGGGTACCCAAATTGGGTTCCTTCCGTCACAGTTTCCTTGAAAAAAAGGAAAAACTCATGTCAATGAAAGGCGGTGGTGGTGGTATTGGTGGCTATTCACAAATCGGTATTCCTTTACCGGAATCCGACGACGACGATGACTACATTCGCCGACGACGGTGGTTTTCGTTTCGAGGATTTTCAGATGGGATCGTGGAGTTCTGGAAGAATTTGAAACGTGTGGCGGGGAAAGCATGGGAGATGGGTGTGTCTGATCCAAGGAAGTTTGTGTTTTCAGCGAAGATGGGTTTGGCTTTGATTTTGATTTCGTTGTTGATTTTTCTTAAACAACCGTTTCCAGATGTTGGGAAGTACTCTGTTTGGGCTATTCTTACTGTTGTTGTCGTCTTTGAGTTCAGTATAGGTAAATCATACTAATCTTTTACTACTTCATAGTAGCACCGATACTTCTGATCGAATGTCTGTGTTCCGGTTTGACACCGTAACAAACATATATATGATTACATTGAATTACGTTATTTTATCAAATTATTACACGGGTGAGGTTATTACCACCAATGACACTGTTGTAGTGTCTTAATCGGTATCCATGTAACCGTGTTTGTGTCGTGCTTCGTATTGACTTACTTCATCCGGTCTCAAATGTATGGAATAAAAAATTCAAACAAAGTTGTCTATGCGAGTTTAGCTCAGTTCGTAGGAATATTATATAATATATGTAGGGGCGGAATTCGAACCTCTGACACTACAGTTATTCACTTTAAGATGAATTCTAGCTACTAGACTACTGAAAATTTCAAACAAAGTATTGCTAATCAGTGCCTTAAGACATTTTTAAGGATACTGTTAAATTAAGAAAATACTCATTAGAAAAGTTTAACATTCCAATTTTCGATGCATTGAGTGTATGAGTTTTCATACAAACTTACTCTTTAAAGTTCTTAAAGAGTGCCCTTAGGGCACTTATTAGCATTTCCCTAATTTAAATTAGATGCATTGACTTTGTTTGTTATTTTATTTTATTTTTGCTTATATAGGAGACTAGAGGAGTACTACTCTATACCAAATAAAGAAACATTCGCAATCATTTTTTGTTTACTTGTTTTATTTATTATTTGTTTATTTAAAGTGGTCTATAATTTTGAATCTTTGATTTCTAAAGCTCAGTTGGTAGGACAATGCATTATTATATGCAGGGGCTGGGGTTCGAACCCAGACACCCCACTTATTCACCTTATAAGGTGAATTCTAGCCACTAGGCCACCTGTCCAAATTTTTTTGACTGTAGTAAAGTTGTTGAAATTAGAAAATATATCCATGAACCGAAATTTGTTTCTATTTTTAGTAATTTTATGACAACACTAGATACAGAGTACCAACAAACTAACTCACACTATTTATAGAGTACCAAACAAACTATCTAGACATAATCAAATTACCACTATTAAACTAACTAATAATTACTAGTGAAAAACACAGTCAATCAATGGTCAAAGTCAAACTAACTAGTAATTTGTGAAAGTTGTTTTTTTCAATAACCAATTATTTTTTAGTTTTCAAAATTACAAGTGGTAATTTTTTTTATATAAAAAAGTGGGAAGTAGAAAATTTGTGGTAATCATTTTACAATCACAACTTTTGAGAATGATGGTTTTTTTAATCCAATTGTGAGAATGATGGTGATGATATGATATCATTAAAACACGTGATTGTATAAAAGCAAATTTAATACTTTTAATTTTATGAAGAAATAAATAAATAAAGGAGTGTTAATTAGAACTCCAGTAAATAAATAAATAAGTAAAGGAGTGTTAATTAGCACTCCAGTAAATAAATAAATAAATAAATAAAGGAGTGTTAATTAGCAAATTTGACCATGGTGGGACAGAAAATTGTTCATACCTATGTTAATGTTGTTTAATTTAGCTGCGTATCGCTGATTATTCTAGAATCACTTGGTTGAAAATATGCTCTTCAACCATGGTGACCCAGGTTTGATACTATGACACGCTGAAGATAATTTAGCAGTATTTCCATTTAATAGTATTCAATTGGTGATGGTGAAATCACAGGTTATAAATATTTCTGCTGCATGTTCTAAAGTCATTGTTTTGCTTATTTAAGTCAATTGTATAATGTTCATAAACTCTTTGTTATTAAATTGAAATACAGTTGACTTAAGTACACTTTATAAAGAAAAATCCATGTTCTGCGTTGACTATGGATATGACTTAAACAGAACTCGCAAAGCTTAGACAATCTTCACCTTACAAGTTGGTTGTAAAGCGTAGACAGTCCTCAATTTACAAATCGAGTTTGTAAAGTTTAATTTGACCTTAAACTTGGAATGATTTTATAATTTATCGTAGATCTGTTGTTGAGCCAGCATATGACAAGTCCGACATATGGCTTGAATAGATCTTATAAAACTCAGACAATGCTTCAATATAAAGCGTTAGAAGTTCACACTTTACAAACTGGTTTTATTTTATTAGGTTTACTTAGGTCCAGAACCTAAAAACCTTTCATCAAGTTTTCCATTGGGTCAACAAGACAAGTATAAGTGTAAACTTTTCACTTATAAACAATAATTGGTCACAATATATCTGTGCAGGAGCAACTCTTAGCAAAGGTCTAAACAGAGGATTAGGGACTTTATCAGCTGGAGGACTTGCTTTAGCATTGGGAATGCTGTCAAAATTGGCTGGACCTGGACAGTGGGAAGAAATTGTAATCATGGTTAGCATCTTCATTGTAGGTCTGATTTTTTAATCACTTTCATCTAATCTCCTTTTTTCCTTAGCTTATACCTTGTTTTTCTGATAGTATGCTATGTGATTTGTAGGATTTTGTGCCACATATGCAAAACTATATCCAACAATGAAGGCTTATGAATATGGTTTCCGTGTGTTCTTGATCACCTATTGTTACGTTATTGTATCTGGATATCGAACCGGAGACTTTCTTCATACAGCAACAAACAGATTTTTGCTCATTGCTCTTGGTGCTGCTGTATCTGTTGGCGTAAATGTGTGCATATATCCAATATGGGCCGGTGAAGATCTACATAATCTTGTTGCAAAAAATTTCACAGGCGTAGCAACATCATTAGAAGGTTGAACCCAATAGACTTTTCTTACTTATTAAAATTAAAATTTACAACATTTGAGGCCTGTTTGGGCACTGGCACAAACACTTGTGAGATTGTTTAGCCGAGCTTACGAGAACGACTTATGACATGTCCATAAGCTATTTTCAGCTTATTGCCATAAGCTCACCAGGATAGCTTATGAAAACAGCTCTTATAATTTACATGAAACATTTTGACTTTATTTTAGTTTTTGTTATCGAAAAAGCTTATGCATAAGCACTTAATTAAGTTGTTTATCCAAAGAGGACCTTAATTTGTAATAACCATCTACTATAACATTTAGTTTTGGTGCTTCATAAACTTATTTCTTCTGTTGAATAACTTAAAGTTTCTTTTCAGGTGTTGTAAATAACTACCTTAACTGTGTTGAATACGATAGGGTGCCATCGAAAATTCTTACGTATCAAGCTTCTGATGATGTGGTTTACAGCGGTTACAGATCAGCTGTTGAATCTACAAGCACAGAAGATGCATTGGTATTACCTTTTTCTACTCAAGTTATCAGTCTATTTTATGAAGAAAAAAATGTTCATCTTTCTGACTTATCGTTGCGTTTGTGTGTTGTTGATTCGGAAGATGAGTTTTGCTATCTGGGAGCCACCTCATGGTCGTTACAAAATGTTTAGATATCCATGGAAAAATTATGTTAAAGTAAGTGGAGCACTCAGGCATTGTGCATTTATGGTCATGGCTATGCATGGATGTATACTTTCTGAAATACAGGTACCTGTGTAGCAACATTTTCTATGTAGCAACTTTTTCTGTTTGATATTAGCATTTACTTCAATTTTTTCGTGTCAGTGTCTGACACATACATGTGTCGAATACCAGACACGCCTTTAATCTGAAGCGTCGGTACTACATAGTTGATATATGTTTCCAGAAATGACGTTTGATTCTTGGAATGTAAGAGATTTTTCATCTAAACTGATATGAACCACAAAATCTAACCGTTTTGCTTTATAGGAAAAACTTCCCAGTTCCTATTGATTGTAAAGTACAAATTTATGATAAACTATTCTGTCATTGTTGAACTCTTAAGCTTCCCCTTTTTGTTATCCTCAGCCCCCTTCATATCAAATTCAAGGAGATATATGGTGCTAAACTAGAGATGTTGCGGGAGTCTTAGTCTTAATGGTTTCCTGTATAGGATTGTGATAGTAGTTTGTAACAGGACTCTCAATTATATCATTATGTATGTGGTATCAGTTAGCTTAATTATGTCCGTATATACTTCATAATAAGTAACTAGAATACTGCTAGGTGGCACCCTTTGCACGACGTTGTTGACCACAGATTGCAGAAAATAGGGGCTTGTTCAAATTCTGCTATGCTGCAGTCGCTATTTGGCGCTTAGTGCTAAATCACGTATGGCGGAACTTGATACATGTATCTTTACTATTTGGCGCTTAGTACTAAATCACGTATGGCGGAACTTGATACATGTATCTTTGTTATTTTTCAACCTATAGCGCTAATATATATCTGCTATTTGACAACACTCCTTTGCACCACTTGATTAGTATTTAAATTTTCAAACTATACACGTATCTTTATTATTTTCCAACCTATGCAAATACACGTTTACTAAACCTCCTTTTTGTGAAATAGGCTCCAGCGGAGAAGAGACAAGTTTTCCGCAAAGAGCTTAAGAAGGTAAGCTCCGAAGCGACTAAAGTTCTACGTGAACTCGGTAACAAAGTTAAAAAGATGGAGAAACTAGGCGAAGAAGACATTCTTTTTGAAGTGCACGAAGCAGTAGAAGAATTACAACAAAAAATCGACAAAAAATCTTTCATTCTTGTAAATGCAGAGCTGTGGGAAATCGGTAACAGGCCAAGAAACGAGAATGTTTCTCAAGACCTCTTACAAATGGATGAAGAAAGACAGTTCTTGGAGTACAAGTCACTAAGTGAAGCTGTGCTTGATTTAAGATCAGTTAGAGTTCCAAAAAGTTGGGAAGAAAATCTTGTTTCACCCGATAACATCATTAAACCTGCTAATGTTGTTACCGACGAAAACATGTTTAGGAAACCAGCATCTTTGTCTTCACATCTTTCATTTCAAGAAGATGCACCAACAAAAGTGGAAGAATCAAAAACCTATGAAAGTGCTAGTTCATTAACTTTGTCAACATTCTCATCACTTTTGATTGAATTTGTGGCTAGGCTACAAAACCTTGTGGATTCTTTTGAAGAATTAGGTGAGAAAGCAAAGTTTAAGGACCCTCTTGAACAACAAGAACTTGTAACATCTGGTTGGACTAGGCTGTTTAATTGTTTCAAATCTAAGGATTGA

Protein sequence

>MS.gene49906.t1

MMQSSHRVPKLGSFRHSFLEKKEKLMSMKGGGGGIGGYSQIDGIVEFWKNLKRVAGKAWEMGVSDPRKFVFSAKMGLALILISLLIFLKQPFPDVGKYSVWAILTVVVVFEFSIGATLSKGLNRGLGTLSAGGLALALGMLSKLAGPGQWEEIVIMVSIFIVGFCATYAKLYPTMKAYEYGFRVFLITYCYVIVSGYRTGDFLHTATNRFLLIALGAAVSVGVNVCIYPIWAGEDLHNLVAKNFTGVATSLEGVVNNYLNCVEYDRVPSKILTYQASDDVVYSGYRSAVESTSTEDALMSFAIWEPPHGRYKMFRYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRQVFRKELKKVSSEATKVLRELGNKVKKMEKLGEEDILFEVHEAVEELQQKIDKKSFILVNAELWEIGNRPRNENVSQDLLQMDEERQFLEYKSLSEAVLDLRSVRVPKSWEENLVSPDNIIKPANVVTDENMFRKPASLSSHLSFQEDAPTKVEESKTYESASSLTLSTFSSLLIEFVARLQNLVDSFEELGEKAKFKDPLEQQELVTSGWTRLFNCFKSKD