Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49906.t1 | XP_013453021.1 | 90.5 | 601 | 29 | 2 | 1 | 575 | 1 | 599 | 2.30E-295 | 1024.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49906.t1 | Q9LS46 | 59.9 | 591 | 182 | 9 | 10 | 563 | 4 | 576 | 2.6e-183 | 643.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49906.t1 | A0A072UB78 | 90.5 | 601 | 29 | 2 | 1 | 575 | 1 | 599 | 1.6e-295 | 1024.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049821 | MS.gene49906 | 0.81065 | 1.04E-50 | -1.69E-46 |
MS.gene050752 | MS.gene49906 | 0.807649 | 4.56E-50 | -1.69E-46 |
MS.gene051343 | MS.gene49906 | 0.818994 | 1.47E-52 | -1.69E-46 |
MS.gene05134 | MS.gene49906 | 0.823578 | 1.28E-53 | -1.69E-46 |
MS.gene05188 | MS.gene49906 | 0.811088 | 8.34E-51 | -1.69E-46 |
MS.gene051975 | MS.gene49906 | 0.802063 | 6.70E-49 | -1.69E-46 |
MS.gene052947 | MS.gene49906 | 0.832614 | 8.55E-56 | -1.69E-46 |
MS.gene053563 | MS.gene49906 | 0.805103 | 1.57E-49 | -1.69E-46 |
MS.gene053564 | MS.gene49906 | 0.802182 | 6.33E-49 | -1.69E-46 |
MS.gene05364 | MS.gene49906 | 0.806288 | 8.85E-50 | -1.69E-46 |
MS.gene054403 | MS.gene49906 | 0.809056 | 2.28E-50 | -1.69E-46 |
MS.gene05469 | MS.gene49906 | 0.803834 | 2.89E-49 | -1.69E-46 |
MS.gene05476 | MS.gene49906 | 0.908519 | 1.56E-81 | -1.69E-46 |
MS.gene055808 | MS.gene49906 | 0.800035 | 1.74E-48 | -1.69E-46 |
MS.gene056215 | MS.gene49906 | 0.811631 | 6.36E-51 | -1.69E-46 |
MS.gene056631 | MS.gene49906 | 0.80962 | 1.73E-50 | -1.69E-46 |
MS.gene057208 | MS.gene49906 | 0.803749 | 3.00E-49 | -1.69E-46 |
MS.gene057694 | MS.gene49906 | 0.833858 | 4.19E-56 | -1.69E-46 |
MS.gene057705 | MS.gene49906 | 0.810118 | 1.35E-50 | -1.69E-46 |
MS.gene057890 | MS.gene49906 | -0.81702 | 4.10E-52 | -1.69E-46 |
MS.gene058852 | MS.gene49906 | 0.821913 | 3.14E-53 | -1.69E-46 |
MS.gene059317 | MS.gene49906 | 0.809831 | 1.56E-50 | -1.69E-46 |
MS.gene06001 | MS.gene49906 | 0.803344 | 3.65E-49 | -1.69E-46 |
MS.gene060365 | MS.gene49906 | 0.822398 | 2.42E-53 | -1.69E-46 |
MS.gene060429 | MS.gene49906 | 0.82689 | 2.12E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49906.t1 | MTR_6g084680 | 93.178 | 601 | 13 | 2 | 1 | 575 | 1 | 599 | 0.0 | 1135 |
MS.gene49906.t1 | MTR_8g104110 | 70.669 | 583 | 147 | 9 | 7 | 573 | 4 | 578 | 0.0 | 820 |
MS.gene49906.t1 | MTR_8g104120 | 70.486 | 576 | 158 | 6 | 7 | 573 | 4 | 576 | 0.0 | 805 |
MS.gene49906.t1 | MTR_8g104130 | 68.715 | 537 | 142 | 8 | 49 | 575 | 48 | 568 | 0.0 | 724 |
MS.gene49906.t1 | MTR_1g111250 | 55.437 | 561 | 213 | 10 | 10 | 556 | 10 | 547 | 0.0 | 592 |
MS.gene49906.t1 | MTR_1g115175 | 32.227 | 512 | 308 | 11 | 47 | 552 | 20 | 498 | 5.94e-81 | 264 |
MS.gene49906.t1 | MTR_5g014310 | 33.271 | 532 | 298 | 13 | 47 | 562 | 40 | 530 | 1.51e-80 | 263 |
MS.gene49906.t1 | MTR_4g098570 | 34.442 | 511 | 293 | 11 | 47 | 552 | 32 | 505 | 8.20e-80 | 261 |
MS.gene49906.t1 | MTR_1g077660 | 36.842 | 361 | 213 | 5 | 44 | 402 | 30 | 377 | 1.73e-79 | 258 |
MS.gene49906.t1 | MTR_1g115140 | 31.660 | 518 | 316 | 12 | 38 | 552 | 22 | 504 | 3.71e-78 | 256 |
MS.gene49906.t1 | MTR_1g115190 | 33.142 | 522 | 307 | 12 | 38 | 552 | 19 | 505 | 3.43e-76 | 251 |
MS.gene49906.t1 | MTR_1g077670 | 36.011 | 361 | 217 | 5 | 44 | 402 | 36 | 384 | 1.22e-72 | 240 |
MS.gene49906.t1 | MTR_4g098610 | 32.752 | 516 | 295 | 11 | 47 | 552 | 32 | 505 | 6.59e-70 | 234 |
MS.gene49906.t1 | MTR_2g087288 | 37.463 | 339 | 198 | 5 | 46 | 381 | 23 | 350 | 2.87e-69 | 231 |
MS.gene49906.t1 | MTR_2g087285 | 36.176 | 340 | 200 | 7 | 48 | 383 | 25 | 351 | 3.34e-62 | 212 |
MS.gene49906.t1 | MTR_7g094770 | 34.503 | 342 | 205 | 8 | 65 | 400 | 61 | 389 | 8.20e-61 | 208 |
MS.gene49906.t1 | MTR_7g106260 | 34.061 | 458 | 259 | 12 | 36 | 476 | 13 | 444 | 8.39e-61 | 209 |
MS.gene49906.t1 | MTR_4g051575 | 33.231 | 325 | 206 | 4 | 60 | 383 | 41 | 355 | 2.77e-60 | 207 |
MS.gene49906.t1 | MTR_6g015325 | 70.238 | 84 | 23 | 1 | 115 | 198 | 7 | 88 | 6.16e-33 | 122 |
MS.gene49906.t1 | MTR_4g051575 | 29.224 | 219 | 145 | 3 | 166 | 383 | 12 | 221 | 2.20e-32 | 127 |
MS.gene49906.t1 | MTR_1g077870 | 71.429 | 84 | 22 | 1 | 112 | 195 | 189 | 270 | 4.09e-32 | 125 |
MS.gene49906.t1 | MTR_0710s0020 | 44.643 | 168 | 86 | 4 | 38 | 203 | 19 | 181 | 4.38e-28 | 111 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49906.t1 | AT3G18440 | 59.664 | 595 | 177 | 9 | 10 | 563 | 4 | 576 | 0.0 | 679 |
MS.gene49906.t1 | AT1G18420 | 59.475 | 533 | 183 | 10 | 40 | 556 | 66 | 581 | 0.0 | 612 |
MS.gene49906.t1 | AT1G18420 | 59.961 | 512 | 175 | 9 | 61 | 556 | 1 | 498 | 0.0 | 599 |
MS.gene49906.t1 | AT1G25480 | 56.000 | 525 | 207 | 7 | 42 | 559 | 41 | 548 | 0.0 | 553 |
MS.gene49906.t1 | AT1G68600 | 55.361 | 513 | 210 | 6 | 48 | 556 | 36 | 533 | 0.0 | 540 |
MS.gene49906.t1 | AT2G17470 | 54.159 | 517 | 206 | 7 | 60 | 567 | 31 | 525 | 0.0 | 531 |
MS.gene49906.t1 | AT2G17470 | 54.159 | 517 | 206 | 7 | 60 | 567 | 53 | 547 | 0.0 | 530 |
MS.gene49906.t1 | AT5G46610 | 32.558 | 516 | 319 | 8 | 44 | 552 | 25 | 518 | 4.07e-87 | 280 |
MS.gene49906.t1 | AT4G17970 | 32.270 | 533 | 314 | 10 | 44 | 552 | 23 | 532 | 5.22e-87 | 280 |
MS.gene49906.t1 | AT5G46600 | 32.157 | 510 | 325 | 11 | 49 | 552 | 31 | 525 | 8.01e-79 | 258 |
MS.gene49906.t1 | AT4G00910 | 37.119 | 361 | 211 | 7 | 51 | 404 | 46 | 397 | 2.36e-75 | 248 |
MS.gene49906.t1 | AT5G46610 | 29.457 | 516 | 311 | 9 | 44 | 552 | 25 | 494 | 4.51e-70 | 235 |
MS.gene49906.t1 | AT1G08430 | 33.913 | 345 | 217 | 7 | 49 | 389 | 2 | 339 | 1.52e-69 | 233 |
MS.gene49906.t1 | AT1G08440 | 34.639 | 332 | 209 | 5 | 51 | 381 | 4 | 328 | 9.02e-68 | 228 |
MS.gene49906.t1 | AT5G46610 | 28.488 | 516 | 293 | 9 | 44 | 552 | 25 | 471 | 4.01e-65 | 221 |
MS.gene49906.t1 | AT3G11680 | 37.830 | 341 | 192 | 6 | 42 | 381 | 27 | 348 | 5.63e-65 | 220 |
MS.gene49906.t1 | AT3G11680 | 37.830 | 341 | 192 | 6 | 42 | 381 | 25 | 346 | 5.96e-65 | 220 |
MS.gene49906.t1 | AT2G27240 | 34.663 | 326 | 205 | 5 | 65 | 389 | 18 | 336 | 5.41e-64 | 218 |
MS.gene49906.t1 | AT2G27240 | 33.429 | 350 | 203 | 7 | 65 | 389 | 18 | 362 | 4.42e-61 | 210 |
Find 106 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTCACAGGGTACCCAAAT+TGG | 0.162014 | 6.4:+58532198 | MS.gene49906:CDS |
GTTTAATTGTTTCAAATCTA+AGG | 0.218930 | 6.4:+58537626 | MS.gene49906:CDS |
ACTCAGGCATTGTGCATTTA+TGG | 0.225741 | 6.4:+58536018 | MS.gene49906:CDS |
ACAATGAAGGCTTATGAATA+TGG | 0.228453 | 6.4:+58535082 | MS.gene49906:CDS |
TATTGTTACGTTATTGTATC+TGG | 0.230169 | 6.4:+58535127 | MS.gene49906:CDS |
TGAGAAACATTCTCGTTTCT+TGG | 0.242314 | 6.4:-58537192 | None:intergenic |
GTGACGGAAGGAACCCAATT+TGG | 0.242848 | 6.4:-58532212 | None:intergenic |
AGGTGAGAAAGCAAAGTTTA+AGG | 0.271199 | 6.4:+58537557 | MS.gene49906:CDS |
AAAGGTCTAAACAGAGGATT+AGG | 0.284845 | 6.4:+58534833 | MS.gene49906:CDS |
ATGTGTGCATATATCCAATA+TGG | 0.288826 | 6.4:+58535233 | MS.gene49906:CDS |
CAGATGGGATCGTGGAGTTC+TGG | 0.299939 | 6.4:+58532386 | MS.gene49906:intron |
TTACCGACGAAAACATGTTT+AGG | 0.343971 | 6.4:+58537364 | MS.gene49906:CDS |
GGATGAAGAAAGACAGTTCT+TGG | 0.345827 | 6.4:+58537230 | MS.gene49906:CDS |
ATTGGGAATGCTGTCAAAAT+TGG | 0.369611 | 6.4:+58534886 | MS.gene49906:CDS |
AGATCTTCACCGGCCCATAT+TGG | 0.373138 | 6.4:-58535247 | None:intergenic |
TAATGAACTAGCACTTTCAT+AGG | 0.375230 | 6.4:-58537457 | None:intergenic |
ATGGTTAGCATCTTCATTGT+AGG | 0.378298 | 6.4:+58534941 | MS.gene49906:CDS |
AGCAGGTTTAATGATGTTAT+CGG | 0.382986 | 6.4:-58537334 | None:intergenic |
TATTCATAAGCCTTCATTGT+TGG | 0.386844 | 6.4:-58535079 | None:intergenic |
TTTCTTCATCCATTTGTAAG+AGG | 0.389222 | 6.4:-58537218 | None:intergenic |
TGTTGGGAAGTACTCTGTTT+GGG | 0.395794 | 6.4:+58532546 | MS.gene49906:CDS |
ATGTTGGGAAGTACTCTGTT+TGG | 0.397740 | 6.4:+58532545 | MS.gene49906:CDS |
GGAGGACTTGCTTTAGCATT+GGG | 0.398305 | 6.4:+58534869 | MS.gene49906:CDS |
AAAGGCGGTGGTGGTGGTAT+TGG | 0.404354 | 6.4:+58532271 | MS.gene49906:CDS |
GCTGAAAACACAAACTTCCT+TGG | 0.420798 | 6.4:-58532460 | None:intergenic |
AGCTGTGGGAAATCGGTAAC+AGG | 0.424395 | 6.4:+58537169 | MS.gene49906:CDS |
TCTCACAGGGTACCCAAATT+GGG | 0.427310 | 6.4:+58532199 | MS.gene49906:CDS |
TGACGGAAGGAACCCAATTT+GGG | 0.431746 | 6.4:-58532211 | None:intergenic |
TTACCTTCTTAAGCTCTTTG+CGG | 0.432353 | 6.4:-58536993 | None:intergenic |
ACAGAGTACTTCCCAACATC+TGG | 0.433300 | 6.4:-58532541 | None:intergenic |
AAACAACCGTTTCCAGATGT+TGG | 0.434028 | 6.4:+58532529 | MS.gene49906:CDS |
AATGCAGAGCTGTGGGAAAT+CGG | 0.437214 | 6.4:+58537162 | MS.gene49906:CDS |
TTCTCAAGACCTCTTACAAA+TGG | 0.444082 | 6.4:+58537209 | MS.gene49906:CDS |
CTGTCAAAATTGGCTGGACC+TGG | 0.444488 | 6.4:+58534896 | MS.gene49906:CDS |
AGATACAATAACGTAACAAT+AGG | 0.444661 | 6.4:-58535125 | None:intergenic |
AACAACCGTTTCCAGATGTT+GGG | 0.444870 | 6.4:+58532530 | MS.gene49906:CDS |
GGCGGTGGTGGTGGTATTGG+TGG | 0.449770 | 6.4:+58532274 | MS.gene49906:CDS |
CAACAAGAACTTGTAACATC+TGG | 0.450503 | 6.4:+58537591 | MS.gene49906:CDS |
ACGTAGAACTTTAGTCGCTT+CGG | 0.460306 | 6.4:-58537019 | None:intergenic |
AAGAATTTGAAACGTGTGGC+GGG | 0.462155 | 6.4:+58532409 | MS.gene49906:CDS |
GCAGGTTTAATGATGTTATC+GGG | 0.463058 | 6.4:-58537333 | None:intergenic |
ACAATTTCTTCCCACTGTCC+AGG | 0.463381 | 6.4:-58534914 | None:intergenic |
TGGAGGACTTGCTTTAGCAT+TGG | 0.464724 | 6.4:+58534868 | MS.gene49906:CDS |
ATGTATACTTTCTGAAATAC+AGG | 0.465569 | 6.4:+58536057 | MS.gene49906:CDS |
GGCGGGGAAAGCATGGGAGA+TGG | 0.469847 | 6.4:+58532426 | MS.gene49906:CDS |
GTGGGAAGAAATTGTAATCA+TGG | 0.470172 | 6.4:+58534922 | MS.gene49906:CDS |
TATCGTATTCAACACAGTTA+AGG | 0.478209 | 6.4:-58535711 | None:intergenic |
ATTGGTGGCTATTCACAAAT+CGG | 0.487156 | 6.4:+58532289 | MS.gene49906:CDS |
TCGTCGGTAACAACATTAGC+AGG | 0.490901 | 6.4:-58537351 | None:intergenic |
GCGGGGAAAGCATGGGAGAT+GGG | 0.493929 | 6.4:+58532427 | MS.gene49906:CDS |
AAAACTTGTCTCTTCTCCGC+TGG | 0.500088 | 6.4:-58536970 | None:intergenic |
AGAAGATGCACCAACAAAAG+TGG | 0.500956 | 6.4:+58537422 | MS.gene49906:CDS |
AACGTGTGGCGGGGAAAGCA+TGG | 0.504246 | 6.4:+58532419 | MS.gene49906:CDS |
TTTCCGCAAAGAGCTTAAGA+AGG | 0.514375 | 6.4:+58536990 | MS.gene49906:CDS |
ATTGTATCTGGATATCGAAC+CGG | 0.516050 | 6.4:+58535139 | MS.gene49906:CDS |
CTTGGTGCTGCTGTATCTGT+TGG | 0.524842 | 6.4:+58535205 | MS.gene49906:CDS |
CCATGATGCAATCTTCTCAC+AGG | 0.526047 | 6.4:+58532185 | None:intergenic |
TGCTGTATGAAGAAAGTCTC+CGG | 0.530779 | 6.4:-58535158 | None:intergenic |
GCATTGTGCATTTATGGTCA+TGG | 0.531427 | 6.4:+58536024 | MS.gene49906:CDS |
GGATTAGGGACTTTATCAGC+TGG | 0.536839 | 6.4:+58534848 | MS.gene49906:CDS |
ACAAAATGTTTAGATATCCA+TGG | 0.538110 | 6.4:+58535969 | MS.gene49906:CDS |
TTCAAGGAAACTGTGACGGA+AGG | 0.540338 | 6.4:-58532224 | None:intergenic |
GGAATGCTGTCAAAATTGGC+TGG | 0.542934 | 6.4:+58534890 | MS.gene49906:CDS |
TTCTTGTAAATGCAGAGCTG+TGG | 0.543062 | 6.4:+58537154 | MS.gene49906:CDS |
CAAGTTCTTGTTGTTCAAGA+GGG | 0.543303 | 6.4:-58537581 | None:intergenic |
GCTATCTGGGAGCCACCTCA+TGG | 0.545299 | 6.4:+58535941 | MS.gene49906:CDS |
GTCGTCTTTGAGTTCAGTAT+AGG | 0.545881 | 6.4:+58532586 | MS.gene49906:CDS |
TACTTCCCAACATCTGGAAA+CGG | 0.547879 | 6.4:-58532535 | None:intergenic |
TACAAGCACAGAAGATGCAT+TGG | 0.549163 | 6.4:+58535810 | MS.gene49906:CDS |
GTATCAAGCTTCTGATGATG+TGG | 0.550964 | 6.4:+58535756 | MS.gene49906:CDS |
GGCGTAGCAACATCATTAGA+AGG | 0.551490 | 6.4:+58535298 | MS.gene49906:CDS |
TGTGTGCATATATCCAATAT+GGG | 0.552034 | 6.4:+58535234 | MS.gene49906:CDS |
TTGTAACATCTGGTTGGACT+AGG | 0.554110 | 6.4:+58537601 | MS.gene49906:CDS |
AAAACTATATCCAACAATGA+AGG | 0.561439 | 6.4:+58535069 | MS.gene49906:CDS |
AAGAACTTGTAACATCTGGT+TGG | 0.564340 | 6.4:+58537595 | MS.gene49906:CDS |
TTAACTGTGTTGAATACGAT+AGG | 0.567618 | 6.4:+58535713 | MS.gene49906:CDS |
TCAATGAAAGGCGGTGGTGG+TGG | 0.568001 | 6.4:+58532265 | MS.gene49906:CDS |
ACAAGTTCTTGTTGTTCAAG+AGG | 0.570038 | 6.4:-58537582 | None:intergenic |
TCTTGTAAATGCAGAGCTGT+GGG | 0.571185 | 6.4:+58537155 | MS.gene49906:CDS |
AAGATTATGTAGATCTTCAC+CGG | 0.577973 | 6.4:-58535257 | None:intergenic |
ATGTCAATGAAAGGCGGTGG+TGG | 0.580766 | 6.4:+58532262 | MS.gene49906:CDS |
CTGGAAGAATTTGAAACGTG+TGG | 0.581704 | 6.4:+58532405 | MS.gene49906:CDS |
AAGGTCTAAACAGAGGATTA+GGG | 0.590676 | 6.4:+58534834 | MS.gene49906:CDS |
ATTGGCTGGACCTGGACAGT+GGG | 0.592025 | 6.4:+58534904 | MS.gene49906:CDS |
ACGTGTGGCGGGGAAAGCAT+GGG | 0.593925 | 6.4:+58532420 | MS.gene49906:CDS |
CTCATGTCAATGAAAGGCGG+TGG | 0.597201 | 6.4:+58532259 | MS.gene49906:CDS |
AGATGTGAAGACAAAGATGC+TGG | 0.600579 | 6.4:-58537390 | None:intergenic |
ACTAAAGTTCTACGTGAACT+CGG | 0.602116 | 6.4:+58537027 | MS.gene49906:CDS |
AGAATTTGAAACGTGTGGCG+GGG | 0.614282 | 6.4:+58532410 | MS.gene49906:CDS |
GAAGAATTTGAAACGTGTGG+CGG | 0.621262 | 6.4:+58532408 | MS.gene49906:CDS |
TTTATGGTCATGGCTATGCA+TGG | 0.621553 | 6.4:+58536034 | MS.gene49906:CDS |
GGCTAGGCTACAAAACCTTG+TGG | 0.623864 | 6.4:+58537518 | MS.gene49906:CDS |
TTAGGGACTTTATCAGCTGG+AGG | 0.624926 | 6.4:+58534851 | MS.gene49906:CDS |
CATGATGCAATCTTCTCACA+GGG | 0.626037 | 6.4:+58532186 | None:intergenic |
TAACTGTGTTGAATACGATA+GGG | 0.627098 | 6.4:+58535714 | MS.gene49906:CDS |
TGCATATATCCAATATGGGC+CGG | 0.627717 | 6.4:+58535238 | MS.gene49906:CDS |
AATTGGCTGGACCTGGACAG+TGG | 0.630767 | 6.4:+58534903 | MS.gene49906:CDS |
TTAAAGTAAGTGGAGCACTC+AGG | 0.643732 | 6.4:+58536002 | MS.gene49906:CDS |
TCTGATGATGTGGTTTACAG+CGG | 0.646018 | 6.4:+58535766 | MS.gene49906:CDS |
GCAGGAGCAACTCTTAGCAA+AGG | 0.647124 | 6.4:+58534815 | MS.gene49906:intron |
AGATGGGTGTGTCTGATCCA+AGG | 0.649272 | 6.4:+58532443 | MS.gene49906:CDS |
ATTCTTCAAAAGAATCCACA+AGG | 0.658164 | 6.4:-58537533 | None:intergenic |
AATAGGTGATCAAGAACACA+CGG | 0.669501 | 6.4:-58535108 | None:intergenic |
CTTAGCAAAGGTCTAAACAG+AGG | 0.672271 | 6.4:+58534827 | MS.gene49906:CDS |
AAACTCATGTCAATGAAAGG+CGG | 0.695753 | 6.4:+58532256 | MS.gene49906:CDS |
CCTGTGAGAAGATTGCATCA+TGG | 0.710798 | 6.4:-58532185 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATAAATAAATAAATAA+AGG | + | chr6.4:58534035-58534054 | MS.gene49906:intron | 0.0% |
!! | ATATTATATAATATATGTAG+GGG | + | chr6.4:58532907-58532926 | MS.gene49906:intron | 10.0% |
!! | ATGAAGAAATAAATAAATAA+AGG | + | chr6.4:58533947-58533966 | MS.gene49906:intron | 10.0% |
!! | GAATATTATATAATATATGT+AGG | + | chr6.4:58532905-58532924 | MS.gene49906:intron | 10.0% |
!! | GTAAATAAATAAATAAGTAA+AGG | + | chr6.4:58533989-58534008 | MS.gene49906:intron | 10.0% |
!! | TATTATTTGTTTATTTAAAG+TGG | + | chr6.4:58533314-58533333 | MS.gene49906:intron | 10.0% |
!! | TTACTTATTTATTTATTTAC+TGG | - | chr6.4:58533989-58534008 | None:intergenic | 10.0% |
!! | TTTGAAAACTAAAAAATAAT+TGG | - | chr6.4:58533746-58533765 | None:intergenic | 10.0% |
!!! | TATTTTATCAAATTATTACA+CGG | + | chr6.4:58532721-58532740 | MS.gene49906:intron | 10.0% |
!!! | TATTTTATTTTTGCTTATAT+AGG | + | chr6.4:58533220-58533239 | MS.gene49906:intron | 10.0% |
!! | AAAAATTATGTTAAAGTAAG+TGG | + | chr6.4:58535992-58536011 | MS.gene49906:CDS | 15.0% |
!! | AAATTAAACAACATTAACAT+AGG | - | chr6.4:58534109-58534128 | None:intergenic | 15.0% |
!! | AAATTTAAATACTAATCAAG+TGG | - | chr6.4:58536870-58536889 | None:intergenic | 15.0% |
!! | AATGCATCTAATTTAAATTA+GGG | - | chr6.4:58533183-58533202 | None:intergenic | 15.0% |
!! | ATTAAAATTTACAACATTTG+AGG | + | chr6.4:58535353-58535372 | MS.gene49906:intron | 15.0% |
!! | CTAAAAATAGAAACAAATTT+CGG | - | chr6.4:58533530-58533549 | None:intergenic | 15.0% |
!! | TACTTATTATGAAGTATATA+CGG | - | chr6.4:58536583-58536602 | None:intergenic | 15.0% |
!! | TTTCACTTATAAACAATAAT+TGG | + | chr6.4:58534777-58534796 | MS.gene49906:intron | 15.0% |
!!! | AATCATATATATGTTTGTTA+CGG | - | chr6.4:58532687-58532706 | None:intergenic | 15.0% |
!!! | ATTATTAGTTAGTTTAATAG+TGG | - | chr6.4:58533646-58533665 | None:intergenic | 15.0% |
!!! | ATTTTATCAAATTATTACAC+GGG | + | chr6.4:58532722-58532741 | MS.gene49906:intron | 15.0% |
!!! | TTATTTTATTAGGTTTACTT+AGG | + | chr6.4:58534688-58534707 | MS.gene49906:intron | 15.0% |
!! | AAACTAAATGTTATAGTAGA+TGG | - | chr6.4:58535622-58535641 | None:intergenic | 20.0% |
!! | AATAAGTAAGAAAAGTCTAT+TGG | - | chr6.4:58535330-58535349 | None:intergenic | 20.0% |
!! | ACCAATTGAATACTATTAAA+TGG | - | chr6.4:58534241-58534260 | None:intergenic | 20.0% |
!! | ATAAAATCATTCCAAGTTTA+AGG | - | chr6.4:58534542-58534561 | None:intergenic | 20.0% |
!! | ATAAGTAAGAAAAGTCTATT+GGG | - | chr6.4:58535329-58535348 | None:intergenic | 20.0% |
!! | ATACATGTATCTTTACTATT+TGG | + | chr6.4:58536739-58536758 | MS.gene49906:intron | 20.0% |
!! | ATTTGTACTTTACAATCAAT+AGG | - | chr6.4:58536341-58536360 | None:intergenic | 20.0% |
!! | CAATGCATCTAATTTAAATT+AGG | - | chr6.4:58533184-58533203 | None:intergenic | 20.0% |
!! | CAATTATATCATTATGTATG+TGG | + | chr6.4:58536536-58536555 | MS.gene49906:intron | 20.0% |
!! | GTTTAATTGTTTCAAATCTA+AGG | + | chr6.4:58537626-58537645 | MS.gene49906:CDS | 20.0% |
!! | TAGATGGTTATTACAAATTA+AGG | - | chr6.4:58535606-58535625 | None:intergenic | 20.0% |
!! | TCCATTTAATAGTATTCAAT+TGG | + | chr6.4:58534237-58534256 | MS.gene49906:intron | 20.0% |
!! | TTACTACAGTCAAAAAAATT+TGG | - | chr6.4:58533476-58533495 | None:intergenic | 20.0% |
!!! | ACTTTAACATAATTTTTCCA+TGG | - | chr6.4:58535989-58536008 | None:intergenic | 20.0% |
!!! | ATAACTTAAAGTTTCTTTTC+AGG | + | chr6.4:58535673-58535692 | MS.gene49906:intron | 20.0% |
!!! | CAAACTGGTTTTATTTTATT+AGG | + | chr6.4:58534678-58534697 | MS.gene49906:intron | 20.0% |
!!! | TCTACTATAACATTTAGTTT+TGG | + | chr6.4:58535622-58535641 | MS.gene49906:intron | 20.0% |
!!! | TTAGTTTTCAAAATTACAAG+TGG | + | chr6.4:58533754-58533773 | MS.gene49906:intron | 20.0% |
! | AAAACTATATCCAACAATGA+AGG | + | chr6.4:58535069-58535088 | MS.gene49906:CDS | 25.0% |
! | AATAAGCTGAAAATAGCTTA+TGG | - | chr6.4:58535450-58535469 | None:intergenic | 25.0% |
! | ACAAAATGTTTAGATATCCA+TGG | + | chr6.4:58535969-58535988 | MS.gene49906:CDS | 25.0% |
! | ACAATGCATTATTATATGCA+GGG | + | chr6.4:58533380-58533399 | MS.gene49906:intron | 25.0% |
! | AGATACAATAACGTAACAAT+AGG | - | chr6.4:58535128-58535147 | None:intergenic | 25.0% |
! | ATCAAATTCAAGGAGATATA+TGG | + | chr6.4:58536431-58536450 | MS.gene49906:intron | 25.0% |
! | ATTGCGAATGTTTCTTTATT+TGG | - | chr6.4:58533270-58533289 | None:intergenic | 25.0% |
! | GTATCCTTAAAAATGTCTTA+AGG | - | chr6.4:58533029-58533048 | None:intergenic | 25.0% |
! | TAATAGTATTCAATTGGTGA+TGG | + | chr6.4:58534243-58534262 | MS.gene49906:intron | 25.0% |
! | TATTGTTACGTTATTGTATC+TGG | + | chr6.4:58535127-58535146 | MS.gene49906:CDS | 25.0% |
! | TTAATTAGCAAATTTGACCA+TGG | + | chr6.4:58534062-58534081 | MS.gene49906:intron | 25.0% |
! | TTATATAATATATGTAGGGG+CGG | + | chr6.4:58532910-58532929 | MS.gene49906:intron | 25.0% |
!! | AAACTTGATGAAAGGTTTTT+AGG | - | chr6.4:58534721-58534740 | None:intergenic | 25.0% |
!! | ATTAAGTTGTTTATCCAAAG+AGG | + | chr6.4:58535579-58535598 | MS.gene49906:intron | 25.0% |
!! | GTTTTTCCTATAAAGCAAAA+CGG | - | chr6.4:58536309-58536328 | None:intergenic | 25.0% |
!!! | ATCACTTTTGATTGAATTTG+TGG | + | chr6.4:58537497-58537516 | MS.gene49906:CDS | 25.0% |
!!! | ATGTATACTTTCTGAAATAC+AGG | + | chr6.4:58536057-58536076 | MS.gene49906:CDS | 25.0% |
!!! | GTTTAATTTGACCTTAAACT+TGG | + | chr6.4:58534528-58534547 | MS.gene49906:intron | 25.0% |
!!! | TGAGTTTTTCCTTTTTTTCA+AGG | - | chr6.4:58532243-58532262 | None:intergenic | 25.0% |
!!! | TTATGTCTAGATAGTTTGTT+TGG | - | chr6.4:58533615-58533634 | None:intergenic | 25.0% |
AAGATTATGTAGATCTTCAC+CGG | - | chr6.4:58535260-58535279 | None:intergenic | 30.0% | |
ACAATGAAGGCTTATGAATA+TGG | + | chr6.4:58535082-58535101 | MS.gene49906:CDS | 30.0% | |
ACAGTCAAAAAAATTTGGAC+AGG | - | chr6.4:58533471-58533490 | None:intergenic | 30.0% | |
ACCTTATAAGGTGAATAAGT+GGG | - | chr6.4:58533428-58533447 | None:intergenic | 30.0% | |
ACTTTACAATCAATAGGAAC+TGG | - | chr6.4:58536335-58536354 | None:intergenic | 30.0% | |
AGCAGGTTTAATGATGTTAT+CGG | - | chr6.4:58537337-58537356 | None:intergenic | 30.0% | |
AGCATACTATCAGAAAAACA+AGG | - | chr6.4:58535017-58535036 | None:intergenic | 30.0% | |
AGGTATAAGCTAAGGAAAAA+AGG | - | chr6.4:58534997-58535016 | None:intergenic | 30.0% | |
AGTTAGAGTTCCAAAAAGTT+GGG | + | chr6.4:58537293-58537312 | MS.gene49906:CDS | 30.0% | |
ATGTGTGCATATATCCAATA+TGG | + | chr6.4:58535233-58535252 | MS.gene49906:CDS | 30.0% | |
ATTCTTCAAAAGAATCCACA+AGG | - | chr6.4:58537536-58537555 | None:intergenic | 30.0% | |
CAATGCATTATTATATGCAG+GGG | + | chr6.4:58533381-58533400 | MS.gene49906:intron | 30.0% | |
CAGATATATATTAGCGCTAT+AGG | - | chr6.4:58536824-58536843 | None:intergenic | 30.0% | |
CGGTAACAAAGTTAAAAAGA+TGG | + | chr6.4:58537047-58537066 | MS.gene49906:CDS | 30.0% | |
CTCCTTGAATTTGATATGAA+GGG | - | chr6.4:58536426-58536445 | None:intergenic | 30.0% | |
CTGATAACTTGAGTAGAAAA+AGG | - | chr6.4:58535841-58535860 | None:intergenic | 30.0% | |
CTTGTTGCAAAAAATTTCAC+AGG | + | chr6.4:58535277-58535296 | MS.gene49906:CDS | 30.0% | |
CTTTACAATCAATAGGAACT+GGG | - | chr6.4:58536334-58536353 | None:intergenic | 30.0% | |
GAAAAACAAGGTATAAGCTA+AGG | - | chr6.4:58535005-58535024 | None:intergenic | 30.0% | |
GAAAAACTCATGTCAATGAA+AGG | + | chr6.4:58532253-58532272 | MS.gene49906:CDS | 30.0% | |
GACAATGCATTATTATATGC+AGG | + | chr6.4:58533379-58533398 | MS.gene49906:intron | 30.0% | |
GTTAAAAAGATGGAGAAACT+AGG | + | chr6.4:58537057-58537076 | MS.gene49906:CDS | 30.0% | |
TAACTGTGTTGAATACGATA+GGG | + | chr6.4:58535714-58535733 | MS.gene49906:CDS | 30.0% | |
TAAGTAACTAGAATACTGCT+AGG | + | chr6.4:58536597-58536616 | MS.gene49906:intron | 30.0% | |
TAATCCAATTGTGAGAATGA+TGG | + | chr6.4:58533862-58533881 | MS.gene49906:intron | 30.0% | |
TAATGAACTAGCACTTTCAT+AGG | - | chr6.4:58537460-58537479 | None:intergenic | 30.0% | |
TAGAAACAAATTTCGGTTCA+TGG | - | chr6.4:58533523-58533542 | None:intergenic | 30.0% | |
TAGTAAACGTGTATTTGCAT+AGG | - | chr6.4:58536926-58536945 | None:intergenic | 30.0% | |
TATCGTATTCAACACAGTTA+AGG | - | chr6.4:58535714-58535733 | None:intergenic | 30.0% | |
TATTCATAAGCCTTCATTGT+TGG | - | chr6.4:58535082-58535101 | None:intergenic | 30.0% | |
TCACAGTTTCCTTGAAAAAA+AGG | + | chr6.4:58532231-58532250 | MS.gene49906:CDS | 30.0% | |
TCCTTGAATTTGATATGAAG+GGG | - | chr6.4:58536425-58536444 | None:intergenic | 30.0% | |
TCTCCTTGAATTTGATATGA+AGG | - | chr6.4:58536427-58536446 | None:intergenic | 30.0% | |
TGAAAAACACAGTCAATCAA+TGG | + | chr6.4:58533672-58533691 | MS.gene49906:intron | 30.0% | |
TGTGTGCATATATCCAATAT+GGG | + | chr6.4:58535234-58535253 | MS.gene49906:CDS | 30.0% | |
TTAACTGTGTTGAATACGAT+AGG | + | chr6.4:58535713-58535732 | MS.gene49906:CDS | 30.0% | |
TTACAAATTAAGGTCCTCTT+TGG | - | chr6.4:58535596-58535615 | None:intergenic | 30.0% | |
TTTCTTCATCCATTTGTAAG+AGG | - | chr6.4:58537221-58537240 | None:intergenic | 30.0% | |
! | AAACCTCCTTTTTGTGAAAT+AGG | + | chr6.4:58536945-58536964 | MS.gene49906:intron | 30.0% |
! | AGATTTTCTTCCCAACTTTT+TGG | - | chr6.4:58537306-58537325 | None:intergenic | 30.0% |
! | AGTGCCTTAAGACATTTTTA+AGG | + | chr6.4:58533022-58533041 | MS.gene49906:intron | 30.0% |
! | ATCTAACCGTTTTGCTTTAT+AGG | + | chr6.4:58536300-58536319 | MS.gene49906:intron | 30.0% |
! | CAAACTCGATTTGTAAATTG+AGG | - | chr6.4:58534504-58534523 | None:intergenic | 30.0% |
! | CTTTCATCAAGTTTTCCATT+GGG | + | chr6.4:58534727-58534746 | MS.gene49906:intron | 30.0% |
! | TAGTATGCTATGTGATTTGT+AGG | + | chr6.4:58535028-58535047 | MS.gene49906:intron | 30.0% |
! | TGATACGTAAGAATTTTCGA+TGG | - | chr6.4:58535742-58535761 | None:intergenic | 30.0% |
! | TTATTCCATACATTTGAGAC+CGG | - | chr6.4:58532840-58532859 | None:intergenic | 30.0% |
! | TTGTGATAGTAGTTTGTAAC+AGG | + | chr6.4:58536508-58536527 | MS.gene49906:intron | 30.0% |
! | TTTCCTAAACATGTTTTCGT+CGG | - | chr6.4:58537370-58537389 | None:intergenic | 30.0% |
!! | AATAGTGTGAGTTAGTTTGT+TGG | - | chr6.4:58533583-58533602 | None:intergenic | 30.0% |
!! | ATCACAACTTTTGAGAATGA+TGG | + | chr6.4:58533833-58533852 | MS.gene49906:intron | 30.0% |
!! | CTGATTATTCTAGAATCACT+TGG | + | chr6.4:58534141-58534160 | MS.gene49906:intron | 30.0% |
!! | GTGGATTCTTTTGAAGAATT+AGG | + | chr6.4:58537537-58537556 | MS.gene49906:CDS | 30.0% |
!! | TGGATATAGTTTTGCATATG+TGG | - | chr6.4:58535062-58535081 | None:intergenic | 30.0% |
!! | TTTGATTCTTCCACTTTTGT+TGG | - | chr6.4:58537435-58537454 | None:intergenic | 30.0% |
!! | TTTGATTTCTAAAGCTCAGT+TGG | + | chr6.4:58533353-58533372 | MS.gene49906:intron | 30.0% |
!! | TTTTGATTGAATTTGTGGCT+AGG | + | chr6.4:58537502-58537521 | MS.gene49906:CDS | 30.0% |
!!! | TTTTTTCAAGGAAACTGTGA+CGG | - | chr6.4:58532231-58532250 | None:intergenic | 30.0% |
AAACGTGTATTTGCATAGGT+TGG | - | chr6.4:58536922-58536941 | None:intergenic | 35.0% | |
AAACTCATGTCAATGAAAGG+CGG | + | chr6.4:58532256-58532275 | MS.gene49906:CDS | 35.0% | |
AAAGGTCTAAACAGAGGATT+AGG | + | chr6.4:58534833-58534852 | MS.gene49906:CDS | 35.0% | |
AAATGCTAATAAGTGCCCTA+AGG | - | chr6.4:58533160-58533179 | None:intergenic | 35.0% | |
AAGAACTTGTAACATCTGGT+TGG | + | chr6.4:58537595-58537614 | MS.gene49906:CDS | 35.0% | |
AAGGTCTAAACAGAGGATTA+GGG | + | chr6.4:58534834-58534853 | MS.gene49906:CDS | 35.0% | |
AATAGGTGATCAAGAACACA+CGG | - | chr6.4:58535111-58535130 | None:intergenic | 35.0% | |
AATGCTAATAAGTGCCCTAA+GGG | - | chr6.4:58533159-58533178 | None:intergenic | 35.0% | |
ACAAATCGGTATTCCTTTAC+CGG | + | chr6.4:58532303-58532322 | MS.gene49906:intron | 35.0% | |
ACAATCTTCACCTTACAAGT+TGG | + | chr6.4:58534460-58534479 | MS.gene49906:intron | 35.0% | |
ACACTCAATGCATCGAAAAT+TGG | - | chr6.4:58533092-58533111 | None:intergenic | 35.0% | |
ACCACAGATTGCAGAAAATA+GGG | + | chr6.4:58536645-58536664 | MS.gene49906:intron | 35.0% | |
ACTAAAGTTCTACGTGAACT+CGG | + | chr6.4:58537027-58537046 | MS.gene49906:CDS | 35.0% | |
AGGTGAGAAAGCAAAGTTTA+AGG | + | chr6.4:58537557-58537576 | MS.gene49906:CDS | 35.0% | |
AGTGGGAAGTAGAAAATTTG+TGG | + | chr6.4:58533797-58533816 | MS.gene49906:intron | 35.0% | |
ATACTAATCAAGTGGTGCAA+AGG | - | chr6.4:58536862-58536881 | None:intergenic | 35.0% | |
ATCAAATTATTACACGGGTG+AGG | + | chr6.4:58532727-58532746 | MS.gene49906:intron | 35.0% | |
ATCACCATCATTCTCACAAT+TGG | - | chr6.4:58533869-58533888 | None:intergenic | 35.0% | |
ATGGTTAGCATCTTCATTGT+AGG | + | chr6.4:58534941-58534960 | MS.gene49906:CDS | 35.0% | |
ATTAGCAAATTTGACCATGG+TGG | + | chr6.4:58534065-58534084 | MS.gene49906:intron | 35.0% | |
ATTGGGAATGCTGTCAAAAT+TGG | + | chr6.4:58534886-58534905 | MS.gene49906:CDS | 35.0% | |
ATTGTATCTGGATATCGAAC+CGG | + | chr6.4:58535139-58535158 | MS.gene49906:CDS | 35.0% | |
CAACAAGAACTTGTAACATC+TGG | + | chr6.4:58537591-58537610 | MS.gene49906:CDS | 35.0% | |
CAAGAATCAAACGTCATTTC+TGG | - | chr6.4:58536238-58536257 | None:intergenic | 35.0% | |
CACCTTATAAGGTGAATAAG+TGG | - | chr6.4:58533429-58533448 | None:intergenic | 35.0% | |
CACTGTTGTAGTGTCTTAAT+CGG | + | chr6.4:58532766-58532785 | MS.gene49906:intron | 35.0% | |
CAGAAATGACGTTTGATTCT+TGG | + | chr6.4:58536236-58536255 | MS.gene49906:intron | 35.0% | |
CAGTTAGAGTTCCAAAAAGT+TGG | + | chr6.4:58537292-58537311 | MS.gene49906:CDS | 35.0% | |
CATAGAAAATGTTGCTACAC+AGG | - | chr6.4:58536085-58536104 | None:intergenic | 35.0% | |
CCAATGGAAAACTTGATGAA+AGG | - | chr6.4:58534729-58534748 | None:intergenic | 35.0% | |
CCTTATAAGGTGAATAAGTG+GGG | - | chr6.4:58533427-58533446 | None:intergenic | 35.0% | |
CCTTGAATTTGATATGAAGG+GGG | - | chr6.4:58536424-58536443 | None:intergenic | 35.0% | |
CTACTATCACAATCCTATAC+AGG | - | chr6.4:58536500-58536519 | None:intergenic | 35.0% | |
GAAAATATGCTCTTCAACCA+TGG | + | chr6.4:58534166-58534185 | MS.gene49906:intron | 35.0% | |
GAAGTTCACACTTTACAAAC+TGG | + | chr6.4:58534663-58534682 | MS.gene49906:intron | 35.0% | |
GATCTATTCAAGCCATATGT+CGG | - | chr6.4:58534606-58534625 | None:intergenic | 35.0% | |
GCAGGTTTAATGATGTTATC+GGG | - | chr6.4:58537336-58537355 | None:intergenic | 35.0% | |
GCTTAGTACTAAATCACGTA+TGG | + | chr6.4:58536763-58536782 | MS.gene49906:intron | 35.0% | |
GTCAAAAAAATTTGGACAGG+TGG | - | chr6.4:58533468-58533487 | None:intergenic | 35.0% | |
GTGGGAAGAAATTGTAATCA+TGG | + | chr6.4:58534922-58534941 | MS.gene49906:CDS | 35.0% | |
TAGTACTAAATCACGTATGG+CGG | + | chr6.4:58536766-58536785 | MS.gene49906:intron | 35.0% | |
TGAGAAACATTCTCGTTTCT+TGG | - | chr6.4:58537195-58537214 | None:intergenic | 35.0% | |
TGGCTAGAATTCACCTTATA+AGG | - | chr6.4:58533440-58533459 | None:intergenic | 35.0% | |
TTACCGACGAAAACATGTTT+AGG | + | chr6.4:58537364-58537383 | MS.gene49906:CDS | 35.0% | |
TTACCTTCTTAAGCTCTTTG+CGG | - | chr6.4:58536996-58537015 | None:intergenic | 35.0% | |
TTAGCAAATTTGACCATGGT+GGG | + | chr6.4:58534066-58534085 | MS.gene49906:intron | 35.0% | |
TTCTCAAGACCTCTTACAAA+TGG | + | chr6.4:58537209-58537228 | MS.gene49906:CDS | 35.0% | |
TTGCTTATATAGGAGACTAG+AGG | + | chr6.4:58533230-58533249 | MS.gene49906:intron | 35.0% | |
! | AACATTTTGTAACGACCATG+AGG | - | chr6.4:58535959-58535978 | None:intergenic | 35.0% |
! | AGACATTCGATCAGAAGTAT+CGG | - | chr6.4:58532648-58532667 | None:intergenic | 35.0% |
! | AGATTTTTGCTCATTGCTCT+TGG | + | chr6.4:58535187-58535206 | MS.gene49906:CDS | 35.0% |
! | AGCAAAACGGTTAGATTTTG+TGG | - | chr6.4:58536296-58536315 | None:intergenic | 35.0% |
! | ATTGGTGGCTATTCACAAAT+CGG | + | chr6.4:58532289-58532308 | MS.gene49906:CDS | 35.0% |
! | CCTTTCATCAAGTTTTCCAT+TGG | + | chr6.4:58534726-58534745 | MS.gene49906:intron | 35.0% |
! | TTTGTGTTTTCAGCGAAGAT+GGG | + | chr6.4:58532469-58532488 | MS.gene49906:CDS | 35.0% |
!! | ACAAGTTCTTGTTGTTCAAG+AGG | - | chr6.4:58537585-58537604 | None:intergenic | 35.0% |
!! | ATTTCTAAAGCTCAGTTGGT+AGG | + | chr6.4:58533357-58533376 | MS.gene49906:intron | 35.0% |
!! | CAAGTTCTTGTTGTTCAAGA+GGG | - | chr6.4:58537584-58537603 | None:intergenic | 35.0% |
!! | GAAGATGAGTTTTGCTATCT+GGG | + | chr6.4:58535928-58535947 | MS.gene49906:intron | 35.0% |
!! | TCGTATTGACTTACTTCATC+CGG | + | chr6.4:58532818-58532837 | MS.gene49906:intron | 35.0% |
!!! | GATGAAAGGTTTTTAGGTTC+TGG | - | chr6.4:58534715-58534734 | None:intergenic | 35.0% |
AAACAACCGTTTCCAGATGT+TGG | + | chr6.4:58532529-58532548 | MS.gene49906:CDS | 40.0% | |
AACAACCGTTTCCAGATGTT+GGG | + | chr6.4:58532530-58532549 | MS.gene49906:CDS | 40.0% | |
ACGTAGAACTTTAGTCGCTT+CGG | - | chr6.4:58537022-58537041 | None:intergenic | 40.0% | |
AGAAGATGCACCAACAAAAG+TGG | + | chr6.4:58537422-58537441 | MS.gene49906:CDS | 40.0% | |
AGACACTACAACAGTGTCAT+TGG | - | chr6.4:58532762-58532781 | None:intergenic | 40.0% | |
AGATGTGAAGACAAAGATGC+TGG | - | chr6.4:58537393-58537412 | None:intergenic | 40.0% | |
ATAAGTCGTTCTCGTAAGCT+CGG | - | chr6.4:58535420-58535439 | None:intergenic | 40.0% | |
ATTATTATATGCAGGGGCTG+GGG | + | chr6.4:58533387-58533406 | MS.gene49906:intron | 40.0% | |
CATATGACAAGTCCGACATA+TGG | + | chr6.4:58534591-58534610 | MS.gene49906:intron | 40.0% | |
CATTATTATATGCAGGGGCT+GGG | + | chr6.4:58533386-58533405 | MS.gene49906:intron | 40.0% | |
CCACAGATTGCAGAAAATAG+GGG | + | chr6.4:58536646-58536665 | MS.gene49906:intron | 40.0% | |
CCCCACTTATTCACCTTATA+AGG | + | chr6.4:58533424-58533443 | MS.gene49906:intron | 40.0% | |
CCCCCTTCATATCAAATTCA+AGG | + | chr6.4:58536421-58536440 | MS.gene49906:intron | 40.0% | |
CGCTTTACAACCAACTTGTA+AGG | - | chr6.4:58534473-58534492 | None:intergenic | 40.0% | |
CGTGTCATAGTATCAAACCT+GGG | - | chr6.4:58534195-58534214 | None:intergenic | 40.0% | |
CTGGAGCCTATTTCACAAAA+AGG | - | chr6.4:58536954-58536973 | None:intergenic | 40.0% | |
CTTAGCAAAGGTCTAAACAG+AGG | + | chr6.4:58534827-58534846 | MS.gene49906:CDS | 40.0% | |
GACCACAGATTGCAGAAAAT+AGG | + | chr6.4:58536644-58536663 | MS.gene49906:intron | 40.0% | |
GAGCCTATTTCACAAAAAGG+AGG | - | chr6.4:58536951-58536970 | None:intergenic | 40.0% | |
GCATTGTGCATTTATGGTCA+TGG | + | chr6.4:58536024-58536043 | MS.gene49906:CDS | 40.0% | |
GCTGAAAACACAAACTTCCT+TGG | - | chr6.4:58532463-58532482 | None:intergenic | 40.0% | |
GCTTAGTGCTAAATCACGTA+TGG | + | chr6.4:58536707-58536726 | MS.gene49906:intron | 40.0% | |
GGATGAAGAAAGACAGTTCT+TGG | + | chr6.4:58537230-58537249 | MS.gene49906:CDS | 40.0% | |
GTAACTAGAATACTGCTAGG+TGG | + | chr6.4:58536600-58536619 | MS.gene49906:intron | 40.0% | |
GTGAATAACTGTAGTGTCAG+AGG | - | chr6.4:58532944-58532963 | None:intergenic | 40.0% | |
GTGCTAAACTAGAGATGTTG+CGG | + | chr6.4:58536453-58536472 | MS.gene49906:intron | 40.0% | |
TAAGGTGAATTCTAGCCACT+AGG | + | chr6.4:58533442-58533461 | MS.gene49906:intron | 40.0% | |
TACAAGCACAGAAGATGCAT+TGG | + | chr6.4:58535810-58535829 | MS.gene49906:CDS | 40.0% | |
TACTTCCCAACATCTGGAAA+CGG | - | chr6.4:58532538-58532557 | None:intergenic | 40.0% | |
TAGTGCTAAATCACGTATGG+CGG | + | chr6.4:58536710-58536729 | MS.gene49906:intron | 40.0% | |
TCTTGTAAATGCAGAGCTGT+GGG | + | chr6.4:58537155-58537174 | MS.gene49906:CDS | 40.0% | |
TGCATATATCCAATATGGGC+CGG | + | chr6.4:58535238-58535257 | MS.gene49906:CDS | 40.0% | |
TGCTAAACTAGAGATGTTGC+GGG | + | chr6.4:58536454-58536473 | MS.gene49906:intron | 40.0% | |
TGCTGTATGAAGAAAGTCTC+CGG | - | chr6.4:58535161-58535180 | None:intergenic | 40.0% | |
TGGTCACAATATATCTGTGC+AGG | + | chr6.4:58534797-58534816 | MS.gene49906:intron | 40.0% | |
TTCATCCGGTCTCAAATGTA+TGG | + | chr6.4:58532832-58532851 | MS.gene49906:intron | 40.0% | |
TTCTTGTAAATGCAGAGCTG+TGG | + | chr6.4:58537154-58537173 | MS.gene49906:CDS | 40.0% | |
TTGTAACATCTGGTTGGACT+AGG | + | chr6.4:58537601-58537620 | MS.gene49906:CDS | 40.0% | |
TTTATGGTCATGGCTATGCA+TGG | + | chr6.4:58536034-58536053 | MS.gene49906:CDS | 40.0% | |
TTTCCGCAAAGAGCTTAAGA+AGG | + | chr6.4:58536990-58537009 | MS.gene49906:CDS | 40.0% | |
! | AACAATTTTCTGTCCCACCA+TGG | - | chr6.4:58534082-58534101 | None:intergenic | 40.0% |
! | AAGAATTTGAAACGTGTGGC+GGG | + | chr6.4:58532409-58532428 | MS.gene49906:CDS | 40.0% |
! | ACAACATTTGAGGCCTGTTT+GGG | + | chr6.4:58535363-58535382 | MS.gene49906:intron | 40.0% |
! | ACTCAGGCATTGTGCATTTA+TGG | + | chr6.4:58536018-58536037 | MS.gene49906:CDS | 40.0% |
! | ATTTTGTAACGACCATGAGG+TGG | - | chr6.4:58535956-58535975 | None:intergenic | 40.0% |
! | CGTTTCGAGGATTTTCAGAT+GGG | + | chr6.4:58532371-58532390 | MS.gene49906:intron | 40.0% |
! | CTGGAAGAATTTGAAACGTG+TGG | + | chr6.4:58532405-58532424 | MS.gene49906:CDS | 40.0% |
! | GAAGAATTTGAAACGTGTGG+CGG | + | chr6.4:58532408-58532427 | MS.gene49906:CDS | 40.0% |
! | GCGTTTGTGTGTTGTTGATT+CGG | + | chr6.4:58535906-58535925 | MS.gene49906:intron | 40.0% |
! | GTATCAAGCTTCTGATGATG+TGG | + | chr6.4:58535756-58535775 | MS.gene49906:CDS | 40.0% |
! | GTCGTCTTTGAGTTCAGTAT+AGG | + | chr6.4:58532586-58532605 | MS.gene49906:CDS | 40.0% |
! | GTTTGTGTTTTCAGCGAAGA+TGG | + | chr6.4:58532468-58532487 | MS.gene49906:CDS | 40.0% |
! | TACAACATTTGAGGCCTGTT+TGG | + | chr6.4:58535362-58535381 | MS.gene49906:intron | 40.0% |
! | TACTTGTCTTGTTGACCCAA+TGG | - | chr6.4:58534745-58534764 | None:intergenic | 40.0% |
! | TCGTTTCGAGGATTTTCAGA+TGG | + | chr6.4:58532370-58532389 | MS.gene49906:intron | 40.0% |
! | TCTGATGATGTGGTTTACAG+CGG | + | chr6.4:58535766-58535785 | MS.gene49906:CDS | 40.0% |
! | TGTTTGTTACGGTGTCAAAC+CGG | - | chr6.4:58532676-58532695 | None:intergenic | 40.0% |
! | TTAAAGTAAGTGGAGCACTC+AGG | + | chr6.4:58536002-58536021 | MS.gene49906:CDS | 40.0% |
! | TTTTGTGAAATAGGCTCCAG+CGG | + | chr6.4:58536954-58536973 | MS.gene49906:intron | 40.0% |
!! | AGTTCTTAAAGAGTGCCCTT+AGG | + | chr6.4:58533141-58533160 | MS.gene49906:intron | 40.0% |
!! | ATGTTGGGAAGTACTCTGTT+TGG | + | chr6.4:58532545-58532564 | MS.gene49906:CDS | 40.0% |
!! | ATTGGTGATGGTGAAATCAC+AGG | + | chr6.4:58534255-58534274 | MS.gene49906:intron | 40.0% |
!! | GCTGTTTTCATAAGCTATCC+TGG | - | chr6.4:58535485-58535504 | None:intergenic | 40.0% |
!! | GGAAGATGAGTTTTGCTATC+TGG | + | chr6.4:58535927-58535946 | MS.gene49906:intron | 40.0% |
!! | GTTCTTAAAGAGTGCCCTTA+GGG | + | chr6.4:58533142-58533161 | MS.gene49906:intron | 40.0% |
!! | TGTTGGGAAGTACTCTGTTT+GGG | + | chr6.4:58532546-58532565 | MS.gene49906:CDS | 40.0% |
AAAACTTGTCTCTTCTCCGC+TGG | - | chr6.4:58536973-58536992 | None:intergenic | 45.0% | |
AAGCTATCCTGGTGAGCTTA+TGG | - | chr6.4:58535474-58535493 | None:intergenic | 45.0% | |
AATGCAGAGCTGTGGGAAAT+CGG | + | chr6.4:58537162-58537181 | MS.gene49906:CDS | 45.0% | |
AATGTAGTCATCGTCGTCGT+CGG | - | chr6.4:58532332-58532351 | None:intergenic | 45.0% | |
ACAATTTCTTCCCACTGTCC+AGG | - | chr6.4:58534917-58534936 | None:intergenic | 45.0% | |
ACGACACAAACACGGTTACA+TGG | - | chr6.4:58532795-58532814 | None:intergenic | 45.0% | |
ATGTCGGACTTGTCATATGC+TGG | - | chr6.4:58534590-58534609 | None:intergenic | 45.0% | |
ATTTGATATGAAGGGGGCTG+AGG | - | chr6.4:58536418-58536437 | None:intergenic | 45.0% | |
CTGATCGAATGTCTGTGTTC+CGG | + | chr6.4:58532654-58532673 | MS.gene49906:intron | 45.0% | |
CTTATTGCCATAAGCTCACC+AGG | + | chr6.4:58535464-58535483 | MS.gene49906:intron | 45.0% | |
GCATTATTATATGCAGGGGC+TGG | + | chr6.4:58533385-58533404 | MS.gene49906:intron | 45.0% | |
GCGTGTCATAGTATCAAACC+TGG | - | chr6.4:58534196-58534215 | None:intergenic | 45.0% | |
GGAATGCTGTCAAAATTGGC+TGG | + | chr6.4:58534890-58534909 | MS.gene49906:CDS | 45.0% | |
GGATTAGGGACTTTATCAGC+TGG | + | chr6.4:58534848-58534867 | MS.gene49906:CDS | 45.0% | |
GGCGTAGCAACATCATTAGA+AGG | + | chr6.4:58535298-58535317 | MS.gene49906:CDS | 45.0% | |
GGGCTGAGGATAACAAAAAG+GGG | - | chr6.4:58536404-58536423 | None:intergenic | 45.0% | |
GGGGCTGAGGATAACAAAAA+GGG | - | chr6.4:58536405-58536424 | None:intergenic | 45.0% | |
TACGAAGCACGACACAAACA+CGG | - | chr6.4:58532803-58532822 | None:intergenic | 45.0% | |
TCCATAGTCAACGCAGAACA+TGG | - | chr6.4:58534410-58534429 | None:intergenic | 45.0% | |
TCGTCGGTAACAACATTAGC+AGG | - | chr6.4:58537354-58537373 | None:intergenic | 45.0% | |
TGACGGAAGGAACCCAATTT+GGG | - | chr6.4:58532214-58532233 | None:intergenic | 45.0% | |
TTAGGGACTTTATCAGCTGG+AGG | + | chr6.4:58534851-58534870 | MS.gene49906:CDS | 45.0% | |
! | ACAGAGTACTTCCCAACATC+TGG | - | chr6.4:58532544-58532563 | None:intergenic | 45.0% |
! | ACGCCTTTAATCTGAAGCGT+CGG | + | chr6.4:58536189-58536208 | MS.gene49906:intron | 45.0% |
! | AGAATTTGAAACGTGTGGCG+GGG | + | chr6.4:58532410-58532429 | MS.gene49906:CDS | 45.0% |
! | AGGATTTTCAGATGGGATCG+TGG | + | chr6.4:58532378-58532397 | MS.gene49906:intron | 45.0% |
! | CACTACAACAGTGTCATTGG+TGG | - | chr6.4:58532759-58532778 | None:intergenic | 45.0% |
! | CCCCTATTTTCTGCAATCTG+TGG | - | chr6.4:58536649-58536668 | None:intergenic | 45.0% |
! | CTTCAGATTAAAGGCGTGTC+TGG | - | chr6.4:58536186-58536205 | None:intergenic | 45.0% |
! | GGAGGACTTGCTTTAGCATT+GGG | + | chr6.4:58534869-58534888 | MS.gene49906:CDS | 45.0% |
! | GTACCGACGCTTCAGATTAA+AGG | - | chr6.4:58536195-58536214 | None:intergenic | 45.0% |
! | TCTCACAGGGTACCCAAATT+GGG | + | chr6.4:58532199-58532218 | MS.gene49906:CDS | 45.0% |
! | TGGAGGACTTGCTTTAGCAT+TGG | + | chr6.4:58534868-58534887 | MS.gene49906:CDS | 45.0% |
! | TTCAAGGAAACTGTGACGGA+AGG | - | chr6.4:58532227-58532246 | None:intergenic | 45.0% |
! | TTCTCACAGGGTACCCAAAT+TGG | + | chr6.4:58532198-58532217 | MS.gene49906:CDS | 45.0% |
!! | GTTTTCAGCGAAGATGGGTT+TGG | + | chr6.4:58532474-58532493 | MS.gene49906:CDS | 45.0% |
!! | TCCATGTTCTGCGTTGACTA+TGG | + | chr6.4:58534406-58534425 | MS.gene49906:intron | 45.0% |
!! | AATATTATATAATATATGTA+GGG | + | chr6.4:58532906-58532925 | MS.gene49906:intron | 5.0% |
!! | TTATTTATTTATTTATTTAC+TGG | - | chr6.4:58534031-58534050 | None:intergenic | 5.0% |
!!! | ATTTTTTTTATATAAAAAAG+TGG | + | chr6.4:58533779-58533798 | MS.gene49906:intron | 5.0% |
!!! | TTTTTTTTATATAAAAAAGT+GGG | + | chr6.4:58533780-58533799 | MS.gene49906:intron | 5.0% |
AATTTGGACAGGTGGCCTAG+TGG | - | chr6.4:58533460-58533479 | None:intergenic | 50.0% | |
AGATCTTCACCGGCCCATAT+TGG | - | chr6.4:58535250-58535269 | None:intergenic | 50.0% | |
AGATGGGTGTGTCTGATCCA+AGG | + | chr6.4:58532443-58532462 | MS.gene49906:CDS | 50.0% | |
AGCTGTGGGAAATCGGTAAC+AGG | + | chr6.4:58537169-58537188 | MS.gene49906:CDS | 50.0% | |
ATGACTACATTCGCCGACGA+CGG | + | chr6.4:58532341-58532360 | MS.gene49906:intron | 50.0% | |
ATGTCAATGAAAGGCGGTGG+TGG | + | chr6.4:58532262-58532281 | MS.gene49906:CDS | 50.0% | |
CTCATGTCAATGAAAGGCGG+TGG | + | chr6.4:58532259-58532278 | MS.gene49906:CDS | 50.0% | |
CTGTCAAAATTGGCTGGACC+TGG | + | chr6.4:58534896-58534915 | MS.gene49906:CDS | 50.0% | |
GAAACGAAAACCACCGTCGT+CGG | - | chr6.4:58532357-58532376 | None:intergenic | 50.0% | |
GCAGGAGCAACTCTTAGCAA+AGG | + | chr6.4:58534815-58534834 | MS.gene49906:intron | 50.0% | |
GCTATGCTGCAGTCGCTATT+TGG | + | chr6.4:58536683-58536702 | MS.gene49906:intron | 50.0% | |
GGCTAGGCTACAAAACCTTG+TGG | + | chr6.4:58537518-58537537 | MS.gene49906:CDS | 50.0% | |
GGGGGCTGAGGATAACAAAA+AGG | - | chr6.4:58536406-58536425 | None:intergenic | 50.0% | |
GGTCAACAACGTCGTGCAAA+GGG | - | chr6.4:58536628-58536647 | None:intergenic | 50.0% | |
GTATCAAACCTGGGTCACCA+TGG | - | chr6.4:58534186-58534205 | None:intergenic | 50.0% | |
TGGTCAACAACGTCGTGCAA+AGG | - | chr6.4:58536629-58536648 | None:intergenic | 50.0% | |
! | AGGTGAATAAGTGGGGTGTC+TGG | - | chr6.4:58533420-58533439 | None:intergenic | 50.0% |
! | GCGAGTTTAGCTCAGTTCGT+AGG | + | chr6.4:58532883-58532902 | MS.gene49906:intron | 50.0% |
! | GGTGAATAAGTGGGGTGTCT+GGG | - | chr6.4:58533419-58533438 | None:intergenic | 50.0% |
! | GTGACGGAAGGAACCCAATT+TGG | - | chr6.4:58532215-58532234 | None:intergenic | 50.0% |
!! | CTTGGTGCTGCTGTATCTGT+TGG | + | chr6.4:58535205-58535224 | MS.gene49906:CDS | 50.0% |
AATTGGCTGGACCTGGACAG+TGG | + | chr6.4:58534903-58534922 | MS.gene49906:CDS | 55.0% | |
ATTGGCTGGACCTGGACAGT+GGG | + | chr6.4:58534904-58534923 | MS.gene49906:CDS | 55.0% | |
CAGATGGGATCGTGGAGTTC+TGG | + | chr6.4:58532386-58532405 | MS.gene49906:intron | 55.0% | |
CTCTTCAACCATGGTGACCC+AGG | + | chr6.4:58534175-58534194 | MS.gene49906:intron | 55.0% | |
GTTTGTGCCAGTGCCCAAAC+AGG | - | chr6.4:58535379-58535398 | None:intergenic | 55.0% | |
TCATCGTCGTCGTCGGATTC+CGG | - | chr6.4:58532325-58532344 | None:intergenic | 55.0% | |
TCGTCGTCGGATTCCGGTAA+AGG | - | chr6.4:58532319-58532338 | None:intergenic | 55.0% | |
! | CGACGGTGGTTTTCGTTTCG+AGG | + | chr6.4:58532358-58532377 | MS.gene49906:intron | 55.0% |
! | TCAATGAAAGGCGGTGGTGG+TGG | + | chr6.4:58532265-58532284 | MS.gene49906:CDS | 55.0% |
! | TTTGAGGCCTGTTTGGGCAC+TGG | + | chr6.4:58535369-58535388 | MS.gene49906:intron | 55.0% |
!! | AAAGGCGGTGGTGGTGGTAT+TGG | + | chr6.4:58532271-58532290 | MS.gene49906:CDS | 55.0% |
ACTACATTCGCCGACGACGG+TGG | + | chr6.4:58532344-58532363 | MS.gene49906:intron | 60.0% | |
GCTATCTGGGAGCCACCTCA+TGG | + | chr6.4:58535941-58535960 | MS.gene49906:CDS | 60.0% | |
! | AACGTGTGGCGGGGAAAGCA+TGG | + | chr6.4:58532419-58532438 | MS.gene49906:CDS | 60.0% |
! | ACGTGTGGCGGGGAAAGCAT+GGG | + | chr6.4:58532420-58532439 | MS.gene49906:CDS | 60.0% |
! | GCGGGGAAAGCATGGGAGAT+GGG | + | chr6.4:58532427-58532446 | MS.gene49906:CDS | 60.0% |
! | GGCGGGGAAAGCATGGGAGA+TGG | + | chr6.4:58532426-58532445 | MS.gene49906:CDS | 65.0% |
!! | GGCGGTGGTGGTGGTATTGG+TGG | + | chr6.4:58532274-58532293 | MS.gene49906:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 58532187 | 58537653 | 58532187 | ID=MS.gene49906 |
chr6.4 | mRNA | 58532187 | 58537653 | 58532187 | ID=MS.gene49906.t1;Parent=MS.gene49906 |
chr6.4 | exon | 58532187 | 58532310 | 58532187 | ID=MS.gene49906.t1.exon1;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58532187 | 58532310 | 58532187 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58532389 | 58532607 | 58532389 | ID=MS.gene49906.t1.exon2;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58532389 | 58532607 | 58532389 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58534819 | 58534962 | 58534819 | ID=MS.gene49906.t1.exon3;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58534819 | 58534962 | 58534819 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58535050 | 58535319 | 58535050 | ID=MS.gene49906.t1.exon4;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58535050 | 58535319 | 58535050 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58535695 | 58535831 | 58535695 | ID=MS.gene49906.t1.exon5;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58535695 | 58535831 | 58535695 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58535932 | 58536078 | 58535932 | ID=MS.gene49906.t1.exon6;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58535932 | 58536078 | 58535932 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
chr6.4 | exon | 58536967 | 58537653 | 58536967 | ID=MS.gene49906.t1.exon7;Parent=MS.gene49906.t1 |
chr6.4 | CDS | 58536967 | 58537653 | 58536967 | ID=cds.MS.gene49906.t1;Parent=MS.gene49906.t1 |
Gene Sequence |
Protein sequence |