AlfalfaGEDB | MS.gene73644

M. sativa cultivar XinJiangDaYe / MS.gene73644

KEGG: K22745
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF07992.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73644.t1	XP_013455748.1	97.2	360	10	0	1	360	1	360	4.40E-196	693.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73644.t1	Q54NS9	32.8	375	216	9	3	346	27	396	8.8e-44	179.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73644.t1	A0A072UJ51	97.2	360	10	0	1	360	1	360	3.2e-196	693.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene73644	0.833479	5.21E-56	-1.69E-46
MS.gene049182	MS.gene73644	0.844617	6.77E-59	-1.69E-46
MS.gene04919	MS.gene73644	0.808824	2.56E-50	-1.69E-46
MS.gene049197	MS.gene73644	0.81404	1.89E-51	-1.69E-46
MS.gene04920	MS.gene73644	0.813145	2.97E-51	-1.69E-46
MS.gene049283	MS.gene73644	0.807649	4.56E-50	-1.69E-46
MS.gene049499	MS.gene73644	0.815797	7.69E-52	-1.69E-46
MS.gene050379	MS.gene73644	0.829441	5.14E-55	-1.69E-46
MS.gene050559	MS.gene73644	0.804787	1.83E-49	-1.69E-46
MS.gene050945	MS.gene73644	0.838878	2.21E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73644.t1	MTR_4g051622	97.222	360	10	0	1	360	1	360	0.0	713
MS.gene73644.t1	MTR_4g051645	67.978	356	112	2	3	357	6	360	0.0	507
MS.gene73644.t1	MTR_2g061440	55.000	80	36	0	138	217	193	272	7.70e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73644.t1	AT5G22140	64.972	354	123	1	4	357	12	364	2.30e-170	479
MS.gene73644.t1	AT3G44190	62.994	354	130	1	4	357	12	364	5.35e-169	476
MS.gene73644.t1	AT3G44190	63.344	311	113	1	47	357	1	310	1.03e-146	417
MS.gene73644.t1	AT5G22140	64.309	311	110	1	47	357	1	310	2.41e-146	416

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Find 67 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGAGTGTATGCACA+AGG	0.668753	4.1:+46649995	MS.gene73644:CDS
AAAGATGATTTGGATGGTCA+TGG	0.566723	4.1:+46649551	MS.gene73644:CDS
AAAGTGACTATAGTGCATAA+AGG	0.487929	4.1:+46649302	MS.gene73644:CDS
AAAGTTGTGATTATAGGAGG+TGG	0.565821	4.1:+46647439	MS.gene73644:CDS
AAGAAAGTTGTGATTATAGG+AGG	0.578925	4.1:+46647436	MS.gene73644:CDS
AAGTCAGGAGATTTGTTTGT+TGG	0.437062	4.1:+46650193	MS.gene73644:CDS
AAGTCTTTCGGTCCTTGTTT+TGG	0.248727	4.1:-46648568	None:intergenic
AATCTGAAACTATTGATAGA+AGG	0.453316	4.1:+46650040	MS.gene73644:CDS
AATGTCTTTCTTGAAGCTTT+TGG	0.265463	4.1:-46649350	None:intergenic
ACAATTGTTGGAAGGCTTCC+TGG	0.324524	4.1:+46650163	MS.gene73644:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACTATAGTGCATAA+AGG	+	chr4.1:46649302-46649321	MS.gene73644:CDS	30.0%
AAGAAAGTTGTGATTATAGG+AGG	+	chr4.1:46647436-46647455	MS.gene73644:CDS	30.0%
AATGATTGTTGGATTGAGAT+TGG	-	chr4.1:46649039-46649058	None:intergenic	30.0%
ACGTAAATTAGGTACTTACA+AGG	+	chr4.1:46650075-46650094	MS.gene73644:CDS	30.0%
ACTCCTTCACAAATGAAAAT+AGG	+	chr4.1:46649429-46649448	MS.gene73644:CDS	30.0%
AGTGAAACAATAGATATTGG+TGG	-	chr4.1:46650106-46650125	None:intergenic	30.0%
ATAAAACCGAACTTGAAATC+CGG	+	chr4.1:46649008-46649027	MS.gene73644:intron	30.0%
CAACTGATCAAATATCAATC+AGG	+	chr4.1:46648659-46648678	MS.gene73644:intron	30.0%
CACACAACTTGACATAAATT+AGG	-	chr4.1:46649120-46649139	None:intergenic	30.0%
CATTAAAATGGCTTCAATCA+AGG	+	chr4.1:46649369-46649388	MS.gene73644:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	46647427	46650264	46647427	ID=MS.gene73644
chr4.1	mRNA	46647427	46650264	46647427	ID=MS.gene73644.t1;Parent=MS.gene73644
chr4.1	exon	46647427	46647524	46647427	ID=MS.gene73644.t1.exon1;Parent=MS.gene73644.t1
chr4.1	CDS	46647427	46647524	46647427	ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1
chr4.1	exon	46648350	46648606	46648350	ID=MS.gene73644.t1.exon2;Parent=MS.gene73644.t1
chr4.1	CDS	46648350	46648606	46648350	ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1
chr4.1	exon	46649201	46649652	46649201	ID=MS.gene73644.t1.exon3;Parent=MS.gene73644.t1
chr4.1	CDS	46649201	46649652	46649201	ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1
chr4.1	exon	46649989	46650264	46649989	ID=MS.gene73644.t1.exon4;Parent=MS.gene73644.t1
chr4.1	CDS	46649989	46650264	46649989	ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1

Gene Sequence

>MS.gene73644

ATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGTGAGCTCTCTCTTTCTTTCTTTGTAGTTCAATTCAATCCATGCTCTTTTTTTTTTTTTTCTGTTTAATTCAGTTTTGTATGCTTGATTTTTATAGTTTGTGTTAAATTTAATTTGAAAGGTAACTAAAATAATATCGATTGGAAGTTTCCGAGTTCCCCTGACCAAAACATCCTTAACCAGTCTTTACTTATCTCCTGACCGAACTCTAGATTACTATAGTCTTTCTCTATGAATTGGAGGGTTAAAAGAAAAAAGTTGAATGTTAGTTTAGAATTTTGATATGGTACTGGAGTGTGCTCTCTTAGAATTAAACATAAGAAAGTGTTATAATAAGCTTATAATATTTCATGCAGAGTGATTGCTTATTTGGTAAATAAGTAATTGATTTTTCAAATTCTGACTAAGAGCCACTGTATATATAGACATCAGGATTTTAAAATCGTAATCCTAGTCACACATCACAATTCTAGCTGTTATAGAGAACCCTGTTGTCGAATATGGTCTTCATCAGTTTCGTTACGATGCTGATGGTTTTAAATTGAGGTTGCAGTCGTGATTACTATGCTACAATCTTTTATTATTGTAGTAAAATGTTGACGAATTCTGTTGATGTGACCGCAATCGCGAAGACCTCTAAAAAATTTATATTATGAAGATCTCTAAAACCTTTATAATGCAGCTGCAATTGCTGTCGTGGACCGCAATTTAAAACGGTACCGTAGAATTTTATGTTTGGTCGCAGTAGTGGATTCTTAGTTAAAACTGTACACGAAACTTTTAGTGTAAAGTGGTTATAGTGACTAATAAGAGTTGTTGAACACAGGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTAAGGGCAATGGTGGAGCCATCCTTTGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTGTCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGGTAAGCAATGATACTTAGTGGTAACTCTCTAGGCTTTAGAAATATCTAATTTCAACTGATCAAATATCAATCAGGGTTTCAAGCCGTGGTCGTGTAGCGATCCTTGATATTGTAAGAAATCACAGTTAGATACTGCTGATGTGACCTCCATTGCAGTTGTTTTGTGGTTTCTGAGACATTGAAAACCTTGATGCTGCAATCGAGATCGCAATCGAAGACCTTTGTTTCAAGACTCTCTATAACTCTTGATCTTGCATTTGATCAAAGTTCCACCATACTATTAATTGCTAGAATTTGGATTTCCTACCATCAATAATCTCACACAATCAGCACAATGGTGGCTGTTTGCTCGAGATTGAACTGTCCATATTTCAATACAGATTTTTTATTTGTTAAAATCTATAAAACCGAACTTGAAATCCGGACCGTCCAATCTCAATCCAACAATCATTGATGTGTTTAATGTGTGAGATTGTTGACTATAGACAATCCGATTTCAAATTGCAATTGCCTAATTTATGTCAAGTTGTGTGAAAGATTTTCAATGTATAAATTCCATTTGAGTGACGAGGAATTCTTTTCTTTCGATGACAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGACAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAACAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACATATCAAACTTCAGTTGGAGAGAGTATAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTGCTACAGCATGGCTTAGTGAAACTTTTCTGAAAGATGATTTGGATGGTCATGGAAGGATCCAAGTTGATGAGTACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATAGGAGACATTACAGATATTCAAGTAAGTGCTTACCAATAAAAGATATATGAAATTCAATAAGCACCATGCATTGTTGTCAGTTAGTGGCTATAGTAGCGGAATTTGAACAATTGTCTATTGATCCGCGATACGCTATTTAGCACAGATGGTTTCCAGATAGTGGCTTAAGCAGCGTTATAGCATTGTATCATAGAAGAATTTGAACAACTGATATTTTCCGCTATCTGGGATTGACCTCAGCTATTGTCAATCCCAGATAGCGGAAAATAACAGTATTAAAACCTTTCACTTTCGGTATTTTCACGCAATCCTAGTTAATACAAAATTTTGATTTGAAAATTGAATTATATGTTACAGGAAATAAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACTTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGAAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGGCTTCCTGGTATGATCAAGTCAGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGACTTGAACCTAATGTTAAAATATCTTAA

Protein sequence

>MS.gene73644.t1

MVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESVPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESIEADTHFLCIGKPLATAWLSETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKIS