Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73644.t1 | XP_013455748.1 | 97.2 | 360 | 10 | 0 | 1 | 360 | 1 | 360 | 4.40E-196 | 693.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73644.t1 | Q54NS9 | 32.8 | 375 | 216 | 9 | 3 | 346 | 27 | 396 | 8.8e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73644.t1 | A0A072UJ51 | 97.2 | 360 | 10 | 0 | 1 | 360 | 1 | 360 | 3.2e-196 | 693.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene73644 | 0.833479 | 5.21E-56 | -1.69E-46 |
| MS.gene049182 | MS.gene73644 | 0.844617 | 6.77E-59 | -1.69E-46 |
| MS.gene049197 | MS.gene73644 | 0.81404 | 1.89E-51 | -1.69E-46 |
| MS.gene04919 | MS.gene73644 | 0.808824 | 2.56E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene73644 | 0.813145 | 2.97E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene73644 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene73644 | 0.815797 | 7.69E-52 | -1.69E-46 |
| MS.gene050379 | MS.gene73644 | 0.829441 | 5.14E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene73644 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene73644 | 0.838878 | 2.21E-57 | -1.69E-46 |
| MS.gene050961 | MS.gene73644 | 0.811009 | 8.67E-51 | -1.69E-46 |
| MS.gene05156 | MS.gene73644 | 0.817051 | 4.03E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene73644 | 0.849575 | 2.96E-60 | -1.69E-46 |
| MS.gene051959 | MS.gene73644 | 0.878416 | 2.86E-69 | -1.69E-46 |
| MS.gene051960 | MS.gene73644 | 0.883199 | 5.49E-71 | -1.69E-46 |
| MS.gene052040 | MS.gene73644 | 0.835649 | 1.48E-56 | -1.69E-46 |
| MS.gene052053 | MS.gene73644 | 0.853458 | 2.36E-61 | -1.69E-46 |
| MS.gene052533 | MS.gene73644 | 0.850771 | 1.37E-60 | -1.69E-46 |
| MS.gene052537 | MS.gene73644 | 0.802221 | 6.22E-49 | -1.69E-46 |
| MS.gene052559 | MS.gene73644 | 0.828621 | 8.12E-55 | -1.69E-46 |
| MS.gene052560 | MS.gene73644 | 0.831068 | 2.06E-55 | -1.69E-46 |
| MS.gene052570 | MS.gene73644 | 0.837556 | 4.85E-57 | -1.69E-46 |
| MS.gene052579 | MS.gene73644 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene052793 | MS.gene73644 | 0.832009 | 1.21E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene73644 | -0.8081 | 3.66E-50 | -1.69E-46 |
| MS.gene053602 | MS.gene73644 | 0.839177 | 1.85E-57 | -1.69E-46 |
| MS.gene054413 | MS.gene73644 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene054490 | MS.gene73644 | 0.820092 | 8.23E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene73644 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene73644 | 0.815063 | 1.12E-51 | -1.69E-46 |
| MS.gene054957 | MS.gene73644 | 0.82053 | 6.53E-53 | -1.69E-46 |
| MS.gene054960 | MS.gene73644 | 0.804614 | 1.98E-49 | -1.69E-46 |
| MS.gene055150 | MS.gene73644 | 0.877398 | 6.49E-69 | -1.69E-46 |
| MS.gene055151 | MS.gene73644 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene73644 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene055506 | MS.gene73644 | 0.814846 | 1.25E-51 | -1.69E-46 |
| MS.gene055550 | MS.gene73644 | 0.800466 | 1.42E-48 | -1.69E-46 |
| MS.gene055964 | MS.gene73644 | 0.820305 | 7.36E-53 | -1.69E-46 |
| MS.gene056100 | MS.gene73644 | 0.801165 | 1.02E-48 | -1.69E-46 |
| MS.gene056185 | MS.gene73644 | 0.812047 | 5.16E-51 | -1.69E-46 |
| MS.gene05624 | MS.gene73644 | 0.809009 | 2.34E-50 | -1.69E-46 |
| MS.gene056363 | MS.gene73644 | 0.833851 | 4.20E-56 | -1.69E-46 |
| MS.gene056530 | MS.gene73644 | 0.8387 | 2.46E-57 | -1.69E-46 |
| MS.gene056677 | MS.gene73644 | 0.8253 | 5.05E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene73644 | 0.825506 | 4.52E-54 | -1.69E-46 |
| MS.gene057001 | MS.gene73644 | 0.843289 | 1.54E-58 | -1.69E-46 |
| MS.gene057102 | MS.gene73644 | 0.827842 | 1.25E-54 | -1.69E-46 |
| MS.gene057148 | MS.gene73644 | -0.860369 | 2.17E-63 | -1.69E-46 |
| MS.gene057174 | MS.gene73644 | 0.839011 | 2.04E-57 | -1.69E-46 |
| MS.gene057472 | MS.gene73644 | 0.814461 | 1.52E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene73644 | 0.816265 | 6.05E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene73644 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene73644 | 0.846064 | 2.75E-59 | -1.69E-46 |
| MS.gene05884 | MS.gene73644 | 0.802387 | 5.75E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene73644 | 0.831801 | 1.36E-55 | -1.69E-46 |
| MS.gene05952 | MS.gene73644 | 0.872959 | 2.13E-67 | -1.69E-46 |
| MS.gene05956 | MS.gene73644 | 0.806882 | 6.63E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene73644 | -0.863297 | 2.75E-64 | -1.69E-46 |
| MS.gene059901 | MS.gene73644 | -0.801778 | 7.67E-49 | -1.69E-46 |
| MS.gene06023 | MS.gene73644 | 0.84916 | 3.87E-60 | -1.69E-46 |
| MS.gene060338 | MS.gene73644 | 0.811239 | 7.73E-51 | -1.69E-46 |
| MS.gene060522 | MS.gene73644 | 0.847534 | 1.09E-59 | -1.69E-46 |
| MS.gene060906 | MS.gene73644 | 0.812093 | 5.04E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene73644 | 0.815536 | 8.79E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene73644 | 0.802062 | 6.70E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene73644 | 0.820339 | 7.23E-53 | -1.69E-46 |
| MS.gene060975 | MS.gene73644 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene060977 | MS.gene73644 | 0.805711 | 1.17E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene73644 | 0.808729 | 2.68E-50 | -1.69E-46 |
| MS.gene061243 | MS.gene73644 | 0.805697 | 1.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73644.t1 | MTR_4g051622 | 97.222 | 360 | 10 | 0 | 1 | 360 | 1 | 360 | 0.0 | 713 |
| MS.gene73644.t1 | MTR_4g051645 | 67.978 | 356 | 112 | 2 | 3 | 357 | 6 | 360 | 0.0 | 507 |
| MS.gene73644.t1 | MTR_2g061440 | 55.000 | 80 | 36 | 0 | 138 | 217 | 193 | 272 | 7.70e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73644.t1 | AT5G22140 | 64.972 | 354 | 123 | 1 | 4 | 357 | 12 | 364 | 2.30e-170 | 479 |
| MS.gene73644.t1 | AT3G44190 | 62.994 | 354 | 130 | 1 | 4 | 357 | 12 | 364 | 5.35e-169 | 476 |
| MS.gene73644.t1 | AT3G44190 | 63.344 | 311 | 113 | 1 | 47 | 357 | 1 | 310 | 1.03e-146 | 417 |
| MS.gene73644.t1 | AT5G22140 | 64.309 | 311 | 110 | 1 | 47 | 357 | 1 | 310 | 2.41e-146 | 416 |
Find 67 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCCATGGGCAAGTTTA+AGG | 0.156955 | 4.1:+46648364 | MS.gene73644:CDS |
| TATCAATAGTTTCAGATTCT+TGG | 0.196415 | 4.1:-46650035 | None:intergenic |
| AAGTCTTTCGGTCCTTGTTT+TGG | 0.248727 | 4.1:-46648568 | None:intergenic |
| AATGTCTTTCTTGAAGCTTT+TGG | 0.265463 | 4.1:-46649350 | None:intergenic |
| ACTCCTTCACAAATGAAAAT+AGG | 0.306830 | 4.1:+46649429 | MS.gene73644:CDS |
| CTTCAAGAAAGACATTAAAA+TGG | 0.321115 | 4.1:+46649357 | MS.gene73644:CDS |
| ACAATTGTTGGAAGGCTTCC+TGG | 0.324524 | 4.1:+46650163 | MS.gene73644:CDS |
| TTCAGATTCAGTTATGTTGA+TGG | 0.355713 | 4.1:-46648472 | None:intergenic |
| GGAGCGAAAGAACGTAAATT+AGG | 0.359944 | 4.1:+46650064 | MS.gene73644:CDS |
| TCAAGATTGCTAGAATATAT+TGG | 0.361205 | 4.1:+46649326 | MS.gene73644:CDS |
| CCAAGTGAAACAATAGATAT+TGG | 0.377879 | 4.1:-46650106 | None:intergenic |
| TTTCCTTTCATGACAATTGT+TGG | 0.378561 | 4.1:+46650151 | MS.gene73644:CDS |
| GATTCCATGGGCAAGTTTAA+GGG | 0.378904 | 4.1:+46648365 | MS.gene73644:CDS |
| GAAAAGAAAGTTGTGATTAT+AGG | 0.392457 | 4.1:+46647433 | MS.gene73644:CDS |
| ATTGCTTACCTCCTTTGTAT+TGG | 0.393585 | 4.1:-46648593 | None:intergenic |
| GATTATCTTGTTATCGCAAC+TGG | 0.394119 | 4.1:+46648528 | MS.gene73644:CDS |
| ATTATAGGAGGTGGTGTTGC+TGG | 0.401428 | 4.1:+46647448 | MS.gene73644:CDS |
| TTTGTATTGGTCAAGTCTTT+CGG | 0.415825 | 4.1:-46648580 | None:intergenic |
| AGTCAGGAGATTTGTTTGTT+GGG | 0.428035 | 4.1:+46650194 | MS.gene73644:CDS |
| AAGTCAGGAGATTTGTTTGT+TGG | 0.437062 | 4.1:+46650193 | MS.gene73644:CDS |
| GGGAAAACAAGAAAGGGATT+AGG | 0.446814 | 4.1:+46650214 | MS.gene73644:CDS |
| GATGAGTACTTGAGAGTGAA+GGG | 0.449684 | 4.1:+46649587 | MS.gene73644:CDS |
| GTTTGTTGGGAAAACAAGAA+AGG | 0.452444 | 4.1:+46650207 | MS.gene73644:CDS |
| AATCTGAAACTATTGATAGA+AGG | 0.453316 | 4.1:+46650040 | MS.gene73644:CDS |
| TGCGATAACAAGATAATCAT+AGG | 0.455029 | 4.1:-46648523 | None:intergenic |
| TTTGTTGGGAAAACAAGAAA+GGG | 0.460435 | 4.1:+46650208 | MS.gene73644:CDS |
| CCAATATCTATTGTTTCACT+TGG | 0.467044 | 4.1:+46650106 | MS.gene73644:CDS |
| CTTCCTGGTATGATCAAGTC+AGG | 0.474220 | 4.1:+46650178 | MS.gene73644:CDS |
| CATAGAGAATATTTCACAAA+AGG | 0.477184 | 4.1:+46648429 | MS.gene73644:CDS |
| CATTAAAATGGCTTCAATCA+AGG | 0.485208 | 4.1:+46649369 | MS.gene73644:CDS |
| AAAGTGACTATAGTGCATAA+AGG | 0.487929 | 4.1:+46649302 | MS.gene73644:CDS |
| CTCTCAAGTACTCATCAACT+TGG | 0.488733 | 4.1:-46649580 | None:intergenic |
| CTTTCATGACAATTGTTGGA+AGG | 0.497870 | 4.1:+46650155 | MS.gene73644:CDS |
| ATTGTCGGTGGAGGTCCAAC+TGG | 0.506007 | 4.1:+46649236 | MS.gene73644:CDS |
| GATTACTGTCCTTTCTGCAA+AGG | 0.514545 | 4.1:-46648403 | None:intergenic |
| TGTTATCGCAACTGGTCATA+CGG | 0.523541 | 4.1:+46648536 | MS.gene73644:CDS |
| TGATGAGTACTTGAGAGTGA+AGG | 0.525012 | 4.1:+46649586 | MS.gene73644:CDS |
| AGGACATATCAAACTTCAGT+TGG | 0.525563 | 4.1:+46649449 | MS.gene73644:CDS |
| GATAATCATAGGCAATTTCA+CGG | 0.532473 | 4.1:-46648512 | None:intergenic |
| CTAAGCCATGCTGTAGCAAG+TGG | 0.535920 | 4.1:-46649515 | None:intergenic |
| ATGGGCAAGTTTAAGGGCAA+TGG | 0.538869 | 4.1:+46648371 | MS.gene73644:CDS |
| TCTGAAGTCTTCACTGCTGA+TGG | 0.538947 | 4.1:+46648489 | MS.gene73644:CDS |
| GTTTCACTTGGAAGAAAACA+TGG | 0.548086 | 4.1:+46650118 | MS.gene73644:CDS |
| CTTCCAACAATTGTCATGAA+AGG | 0.551683 | 4.1:-46650154 | None:intergenic |
| GGCAAGTTTAAGGGCAATGG+TGG | 0.562939 | 4.1:+46648374 | MS.gene73644:CDS |
| TGGAGCCATCCTTTGCAGAA+AGG | 0.564597 | 4.1:+46648394 | MS.gene73644:CDS |
| ACTGTCCTTTCTGCAAAGGA+TGG | 0.565164 | 4.1:-46648399 | None:intergenic |
| AAAGTTGTGATTATAGGAGG+TGG | 0.565821 | 4.1:+46647439 | MS.gene73644:CDS |
| AAAGATGATTTGGATGGTCA+TGG | 0.566723 | 4.1:+46649551 | MS.gene73644:CDS |
| AGTGAAACAATAGATATTGG+TGG | 0.570389 | 4.1:-46650103 | None:intergenic |
| CGGAATCTGTCCCCAAAACA+AGG | 0.572224 | 4.1:+46648556 | MS.gene73644:CDS |
| AGTACTTGAGAGTGAAGGGA+AGG | 0.576975 | 4.1:+46649591 | MS.gene73644:CDS |
| TCTCCTGACTTGATCATACC+AGG | 0.577444 | 4.1:-46650181 | None:intergenic |
| AAGAAAGTTGTGATTATAGG+AGG | 0.578925 | 4.1:+46647436 | MS.gene73644:CDS |
| GCTGCTAGCTCGACACCAGT+TGG | 0.587572 | 4.1:-46649251 | None:intergenic |
| ATTGCCCTTAAACTTGCCCA+TGG | 0.588671 | 4.1:-46648369 | None:intergenic |
| TTTCTGAAAGATGATTTGGA+TGG | 0.601708 | 4.1:+46649545 | MS.gene73644:CDS |
| CTGAAACTATTGATAGAAGG+AGG | 0.602874 | 4.1:+46650043 | MS.gene73644:CDS |
| ATGATTTGGATGGTCATGGA+AGG | 0.615413 | 4.1:+46649555 | MS.gene73644:CDS |
| ACGTAAATTAGGTACTTACA+AGG | 0.616980 | 4.1:+46650075 | MS.gene73644:CDS |
| CGAGCTAGCAGCAGAGATTG+CGG | 0.623893 | 4.1:+46649262 | MS.gene73644:CDS |
| GGAAACCACTTGCTACAGCA+TGG | 0.653025 | 4.1:+46649510 | MS.gene73644:CDS |
| GAAAGACTTGACCAATACAA+AGG | 0.653500 | 4.1:+46648582 | MS.gene73644:CDS |
| TGATGGCACTTGATATAACA+AGG | 0.655923 | 4.1:-46648455 | None:intergenic |
| AAACAAGGAGTGTATGCACA+AGG | 0.668753 | 4.1:+46649995 | MS.gene73644:CDS |
| AGACTTGACCAATACAAAGG+AGG | 0.681103 | 4.1:+46648585 | MS.gene73644:CDS |
| ATGTTACAGGAAATAAAACA+AGG | 0.698106 | 4.1:+46649980 | MS.gene73644:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATAATATAAATTTTTTAG+AGG | - | chr4.1:46648160-46648179 | None:intergenic | 10.0% |
| !! | AAAAAATCTGTATTGAAATA+TGG | - | chr4.1:46648974-46648993 | None:intergenic | 15.0% |
| !! | AAAATTGAATTATATGTTAC+AGG | + | chr4.1:46649967-46649986 | MS.gene73644:intron | 15.0% |
| !!! | ATCAAAATTTTGTATTAACT+AGG | - | chr4.1:46649944-46649963 | None:intergenic | 15.0% |
| !!! | GAATTTCATATATCTTTTAT+TGG | - | chr4.1:46649667-46649686 | None:intergenic | 15.0% |
| !!! | TGTGTTAAATTTAATTTGAA+AGG | + | chr4.1:46647623-46647642 | MS.gene73644:intron | 15.0% |
| !! | AATTCTAGCAATTAATAGTA+TGG | - | chr4.1:46648882-46648901 | None:intergenic | 20.0% |
| !! | GAAAAAAAAAAAAAAGAGCA+TGG | - | chr4.1:46647566-46647585 | None:intergenic | 20.0% |
| !! | GTAACTAAAATAATATCGAT+TGG | + | chr4.1:46647645-46647664 | MS.gene73644:intron | 20.0% |
| !! | TACTATTAATTGCTAGAATT+TGG | + | chr4.1:46648882-46648901 | MS.gene73644:intron | 20.0% |
| !!! | ATACACATTTTCTATGTATA+GGG | + | chr4.1:46649489-46649508 | MS.gene73644:CDS | 20.0% |
| !!! | GTTAGTTTAGAATTTTGATA+TGG | + | chr4.1:46647788-46647807 | MS.gene73644:intron | 20.0% |
| ! | AACTGATCAAATATCAATCA+GGG | + | chr4.1:46648660-46648679 | MS.gene73644:intron | 25.0% |
| ! | ATGTTACAGGAAATAAAACA+AGG | + | chr4.1:46649980-46649999 | MS.gene73644:intron | 25.0% |
| ! | CATAGAGAATATTTCACAAA+AGG | + | chr4.1:46648429-46648448 | MS.gene73644:CDS | 25.0% |
| ! | CTTCAAGAAAGACATTAAAA+TGG | + | chr4.1:46649357-46649376 | MS.gene73644:CDS | 25.0% |
| ! | GAAAAGAAAGTTGTGATTAT+AGG | + | chr4.1:46647433-46647452 | MS.gene73644:CDS | 25.0% |
| ! | GTATTAAAACCTTTCACTTT+CGG | + | chr4.1:46649904-46649923 | MS.gene73644:intron | 25.0% |
| ! | TATAGTCTTTCTCTATGAAT+TGG | + | chr4.1:46647741-46647760 | MS.gene73644:intron | 25.0% |
| ! | TATCAATAGTTTCAGATTCT+TGG | - | chr4.1:46650038-46650057 | None:intergenic | 25.0% |
| ! | TCAAGATTGCTAGAATATAT+TGG | + | chr4.1:46649326-46649345 | MS.gene73644:CDS | 25.0% |
| ! | TGTGATTTCTTACAATATCA+AGG | - | chr4.1:46648711-46648730 | None:intergenic | 25.0% |
| ! | TTAAACACATCAATGATTGT+TGG | - | chr4.1:46649050-46649069 | None:intergenic | 25.0% |
| !! | AATCTGAAACTATTGATAGA+AGG | + | chr4.1:46650040-46650059 | MS.gene73644:CDS | 25.0% |
| !! | CTTTTGTGAAATATTCTCTA+TGG | - | chr4.1:46648431-46648450 | None:intergenic | 25.0% |
| !! | GATACACATTTTCTATGTAT+AGG | + | chr4.1:46649488-46649507 | MS.gene73644:CDS | 25.0% |
| !!! | AACTTTTCTGAAAGATGATT+TGG | + | chr4.1:46649541-46649560 | MS.gene73644:CDS | 25.0% |
| !!! | TTAGAATTTTGATATGGTAC+TGG | + | chr4.1:46647794-46647813 | MS.gene73644:intron | 25.0% |
| AAAGTGACTATAGTGCATAA+AGG | + | chr4.1:46649302-46649321 | MS.gene73644:CDS | 30.0% | |
| AAGAAAGTTGTGATTATAGG+AGG | + | chr4.1:46647436-46647455 | MS.gene73644:CDS | 30.0% | |
| AATGATTGTTGGATTGAGAT+TGG | - | chr4.1:46649039-46649058 | None:intergenic | 30.0% | |
| ACGTAAATTAGGTACTTACA+AGG | + | chr4.1:46650075-46650094 | MS.gene73644:CDS | 30.0% | |
| ACTCCTTCACAAATGAAAAT+AGG | + | chr4.1:46649429-46649448 | MS.gene73644:CDS | 30.0% | |
| AGTGAAACAATAGATATTGG+TGG | - | chr4.1:46650106-46650125 | None:intergenic | 30.0% | |
| ATAAAACCGAACTTGAAATC+CGG | + | chr4.1:46649008-46649027 | MS.gene73644:intron | 30.0% | |
| CAACTGATCAAATATCAATC+AGG | + | chr4.1:46648659-46648678 | MS.gene73644:intron | 30.0% | |
| CACACAACTTGACATAAATT+AGG | - | chr4.1:46649120-46649139 | None:intergenic | 30.0% | |
| CATTAAAATGGCTTCAATCA+AGG | + | chr4.1:46649369-46649388 | MS.gene73644:CDS | 30.0% | |
| CCAAGTGAAACAATAGATAT+TGG | - | chr4.1:46650109-46650128 | None:intergenic | 30.0% | |
| CCAATATCTATTGTTTCACT+TGG | + | chr4.1:46650106-46650125 | MS.gene73644:CDS | 30.0% | |
| CGACCAAACATAAAATTCTA+CGG | - | chr4.1:46648246-46648265 | None:intergenic | 30.0% | |
| GATAATCATAGGCAATTTCA+CGG | - | chr4.1:46648515-46648534 | None:intergenic | 30.0% | |
| TAATAAGAGTTGTTGAACAC+AGG | + | chr4.1:46648328-46648347 | MS.gene73644:intron | 30.0% | |
| TATAGAGAGTCTTGAAACAA+AGG | - | chr4.1:46648828-46648847 | None:intergenic | 30.0% | |
| TCTAGCAATTAATAGTATGG+TGG | - | chr4.1:46648879-46648898 | None:intergenic | 30.0% | |
| TGATTGTGTGAGATTATTGA+TGG | - | chr4.1:46648916-46648935 | None:intergenic | 30.0% | |
| TGCGATAACAAGATAATCAT+AGG | - | chr4.1:46648526-46648545 | None:intergenic | 30.0% | |
| TTCAGATTCAGTTATGTTGA+TGG | - | chr4.1:46648475-46648494 | None:intergenic | 30.0% | |
| TTTCCTTTCATGACAATTGT+TGG | + | chr4.1:46650151-46650170 | MS.gene73644:CDS | 30.0% | |
| TTTGTTGGGAAAACAAGAAA+GGG | + | chr4.1:46650208-46650227 | MS.gene73644:CDS | 30.0% | |
| ! | AATGTCTTTCTTGAAGCTTT+TGG | - | chr4.1:46649353-46649372 | None:intergenic | 30.0% |
| ! | ACGAAACTTTTAGTGTAAAG+TGG | + | chr4.1:46648295-46648314 | MS.gene73644:intron | 30.0% |
| ! | AGATAAGTAAAGACTGGTTA+AGG | - | chr4.1:46647700-46647719 | None:intergenic | 30.0% |
| ! | AGGCAATTGCAATTTGAAAT+CGG | - | chr4.1:46649100-46649119 | None:intergenic | 30.0% |
| ! | GACTATAGTAATCTAGAGTT+CGG | - | chr4.1:46647728-46647747 | None:intergenic | 30.0% |
| ! | GTACCGTAGAATTTTATGTT+TGG | + | chr4.1:46648240-46648259 | MS.gene73644:intron | 30.0% |
| ! | TGTCCTATTTTCATTTGTGA+AGG | - | chr4.1:46649435-46649454 | None:intergenic | 30.0% |
| ! | TTTCTGAAAGATGATTTGGA+TGG | + | chr4.1:46649545-46649564 | MS.gene73644:CDS | 30.0% |
| ! | TTTGTATTGGTCAAGTCTTT+CGG | - | chr4.1:46648583-46648602 | None:intergenic | 30.0% |
| !!! | ACTATAGTCACTTTTTTGTC+AGG | - | chr4.1:46649296-46649315 | None:intergenic | 30.0% |
| !!! | ATGCTGATGGTTTTAAATTG+AGG | + | chr4.1:46648048-46648067 | MS.gene73644:intron | 30.0% |
| !!! | GATGTTGTATAGTTTTAGCA+AGG | - | chr4.1:46647480-46647499 | None:intergenic | 30.0% |
| AAACCACAAAACAACTGCAA+TGG | - | chr4.1:46648757-46648776 | None:intergenic | 35.0% | |
| AAAGTTGTGATTATAGGAGG+TGG | + | chr4.1:46647439-46647458 | MS.gene73644:CDS | 35.0% | |
| AGGACATATCAAACTTCAGT+TGG | + | chr4.1:46649449-46649468 | MS.gene73644:CDS | 35.0% | |
| AGGTAAGCAATGATACTTAG+TGG | + | chr4.1:46648605-46648624 | MS.gene73644:intron | 35.0% | |
| AGTCTTTCTCTATGAATTGG+AGG | + | chr4.1:46647744-46647763 | MS.gene73644:intron | 35.0% | |
| ATACTTAGTGGTAACTCTCT+AGG | + | chr4.1:46648617-46648636 | MS.gene73644:intron | 35.0% | |
| ATGCAGAGTGATTGCTTATT+TGG | + | chr4.1:46647874-46647893 | MS.gene73644:intron | 35.0% | |
| ATTGCTTACCTCCTTTGTAT+TGG | - | chr4.1:46648596-46648615 | None:intergenic | 35.0% | |
| ATTGTTGGATTGAGATTGGA+CGG | - | chr4.1:46649035-46649054 | None:intergenic | 35.0% | |
| CAATTGCAGCTGCATTATAA+AGG | - | chr4.1:46648195-46648214 | None:intergenic | 35.0% | |
| CCACTGTATATATAGACATC+AGG | + | chr4.1:46647934-46647953 | MS.gene73644:intron | 35.0% | |
| CCTGATGTCTATATATACAG+TGG | - | chr4.1:46647937-46647956 | None:intergenic | 35.0% | |
| CTGAAACTATTGATAGAAGG+AGG | + | chr4.1:46650043-46650062 | MS.gene73644:CDS | 35.0% | |
| CTTCCAACAATTGTCATGAA+AGG | - | chr4.1:46650157-46650176 | None:intergenic | 35.0% | |
| CTTTCATGACAATTGTTGGA+AGG | + | chr4.1:46650155-46650174 | MS.gene73644:CDS | 35.0% | |
| GAAAGACTTGACCAATACAA+AGG | + | chr4.1:46648582-46648601 | MS.gene73644:CDS | 35.0% | |
| GTCTTTCTCTATGAATTGGA+GGG | + | chr4.1:46647745-46647764 | MS.gene73644:intron | 35.0% | |
| GTGAAAATACCGAAAGTGAA+AGG | - | chr4.1:46649916-46649935 | None:intergenic | 35.0% | |
| GTTTCACTTGGAAGAAAACA+TGG | + | chr4.1:46650118-46650137 | MS.gene73644:CDS | 35.0% | |
| TAAATTCCATTTGAGTGACG+AGG | + | chr4.1:46649156-46649175 | MS.gene73644:intron | 35.0% | |
| TAGAATTGTGATGTGTGACT+AGG | - | chr4.1:46647976-46647995 | None:intergenic | 35.0% | |
| TGATGGCACTTGATATAACA+AGG | - | chr4.1:46648458-46648477 | None:intergenic | 35.0% | |
| ! | AAAGATGATTTGGATGGTCA+TGG | + | chr4.1:46649551-46649570 | MS.gene73644:CDS | 35.0% |
| ! | AACTGATATTTTCCGCTATC+TGG | + | chr4.1:46649837-46649856 | MS.gene73644:intron | 35.0% |
| ! | AAGTCAGGAGATTTGTTTGT+TGG | + | chr4.1:46650193-46650212 | MS.gene73644:CDS | 35.0% |
| ! | ACTGATATTTTCCGCTATCT+GGG | + | chr4.1:46649838-46649857 | MS.gene73644:intron | 35.0% |
| ! | AGTCAGGAGATTTGTTTGTT+GGG | + | chr4.1:46650194-46650213 | MS.gene73644:CDS | 35.0% |
| ! | GATTATCTTGTTATCGCAAC+TGG | + | chr4.1:46648528-46648547 | MS.gene73644:CDS | 35.0% |
| ! | GTTTGTTGGGAAAACAAGAA+AGG | + | chr4.1:46650207-46650226 | MS.gene73644:CDS | 35.0% |
| ! | TGTGTGAGATTATTGATGGT+AGG | - | chr4.1:46648912-46648931 | None:intergenic | 35.0% |
| !! | AAGACTGGTTAAGGATGTTT+TGG | - | chr4.1:46647691-46647710 | None:intergenic | 35.0% |
| !! | TACGGTACCGTTTTAAATTG+CGG | - | chr4.1:46648228-46648247 | None:intergenic | 35.0% |
| !!! | ACTGTTATTTTCCGCTATCT+GGG | - | chr4.1:46649886-46649905 | None:intergenic | 35.0% |
| !!! | AGGAGTATTTTGAGATTCCA+TGG | + | chr4.1:46648352-46648371 | MS.gene73644:CDS | 35.0% |
| !!! | GGAGTATTTTGAGATTCCAT+GGG | + | chr4.1:46648353-46648372 | MS.gene73644:CDS | 35.0% |
| !!! | TACTGTTATTTTCCGCTATC+TGG | - | chr4.1:46649887-46649906 | None:intergenic | 35.0% |
| AAGAGTTGTTGAACACAGGA+AGG | + | chr4.1:46648332-46648351 | MS.gene73644:intron | 40.0% | |
| AGAAAGAAAGAGAGAGCTCA+CGG | - | chr4.1:46647526-46647545 | None:intergenic | 40.0% | |
| AGAATTCCTCGTCACTCAAA+TGG | - | chr4.1:46649165-46649184 | None:intergenic | 40.0% | |
| AGACTTGACCAATACAAAGG+AGG | + | chr4.1:46648585-46648604 | MS.gene73644:CDS | 40.0% | |
| AGATTCCATGGGCAAGTTTA+AGG | + | chr4.1:46648364-46648383 | MS.gene73644:CDS | 40.0% | |
| ATCTCACACAATCAGCACAA+TGG | + | chr4.1:46648922-46648941 | MS.gene73644:intron | 40.0% | |
| CACTAACTGACAACAATGCA+TGG | - | chr4.1:46649698-46649717 | None:intergenic | 40.0% | |
| CATGCATTGTTGTCAGTTAG+TGG | + | chr4.1:46649696-46649715 | MS.gene73644:intron | 40.0% | |
| CTATTGTCAATCCCAGATAG+CGG | + | chr4.1:46649872-46649891 | MS.gene73644:intron | 40.0% | |
| CTCTCAAGTACTCATCAACT+TGG | - | chr4.1:46649583-46649602 | None:intergenic | 40.0% | |
| GAAGACCATATTCGACAACA+GGG | - | chr4.1:46648013-46648032 | None:intergenic | 40.0% | |
| GATACGCTATTTAGCACAGA+TGG | + | chr4.1:46649758-46649777 | MS.gene73644:intron | 40.0% | |
| GATGAGTACTTGAGAGTGAA+GGG | + | chr4.1:46649587-46649606 | MS.gene73644:CDS | 40.0% | |
| GATTACTGTCCTTTCTGCAA+AGG | - | chr4.1:46648406-46648425 | None:intergenic | 40.0% | |
| GATTCCATGGGCAAGTTTAA+GGG | + | chr4.1:46648365-46648384 | MS.gene73644:CDS | 40.0% | |
| GGAGCGAAAGAACGTAAATT+AGG | + | chr4.1:46650064-46650083 | MS.gene73644:CDS | 40.0% | |
| GGGAAAACAAGAAAGGGATT+AGG | + | chr4.1:46650214-46650233 | MS.gene73644:CDS | 40.0% | |
| GTCAGGAGATAAGTAAAGAC+TGG | - | chr4.1:46647706-46647725 | None:intergenic | 40.0% | |
| TCAGTTAGTGGCTATAGTAG+CGG | + | chr4.1:46649708-46649727 | MS.gene73644:intron | 40.0% | |
| TCGTGGACCGCAATTTAAAA+CGG | + | chr4.1:46648218-46648237 | MS.gene73644:intron | 40.0% | |
| TGAAGACCATATTCGACAAC+AGG | - | chr4.1:46648014-46648033 | None:intergenic | 40.0% | |
| TGATGAGTACTTGAGAGTGA+AGG | + | chr4.1:46649586-46649605 | MS.gene73644:CDS | 40.0% | |
| TGTTATCGCAACTGGTCATA+CGG | + | chr4.1:46648536-46648555 | MS.gene73644:CDS | 40.0% | |
| TTTATGTTTGGTCGCAGTAG+TGG | + | chr4.1:46648252-46648271 | MS.gene73644:intron | 40.0% | |
| ! | AAACAAGGAGTGTATGCACA+AGG | + | chr4.1:46649995-46650014 | MS.gene73644:CDS | 40.0% |
| ! | AGGAACAACGTTTTCGCTAT+AGG | + | chr4.1:46649611-46649630 | MS.gene73644:CDS | 40.0% |
| ! | ATGATTTGGATGGTCATGGA+AGG | + | chr4.1:46649555-46649574 | MS.gene73644:CDS | 40.0% |
| ! | TAGTAATCTAGAGTTCGGTC+AGG | - | chr4.1:46647723-46647742 | None:intergenic | 40.0% |
| !! | AAGTCTTTCGGTCCTTGTTT+TGG | - | chr4.1:46648571-46648590 | None:intergenic | 40.0% |
| !!! | AGTCTTTCGGTCCTTGTTTT+GGG | - | chr4.1:46648570-46648589 | None:intergenic | 40.0% |
| !!! | GCACGTTCAGTTTTGATTGT+CGG | + | chr4.1:46649221-46649240 | MS.gene73644:CDS | 40.0% |
| !!! | GGTTAAGGATGTTTTGGTCA+GGG | - | chr4.1:46647685-46647704 | None:intergenic | 40.0% |
| !!! | GTTAAGGATGTTTTGGTCAG+GGG | - | chr4.1:46647684-46647703 | None:intergenic | 40.0% |
| !!! | TGGTTAAGGATGTTTTGGTC+AGG | - | chr4.1:46647686-46647705 | None:intergenic | 40.0% |
| ACAATTGTTGGAAGGCTTCC+TGG | + | chr4.1:46650163-46650182 | MS.gene73644:CDS | 45.0% | |
| ACTGTCCTTTCTGCAAAGGA+TGG | - | chr4.1:46648402-46648421 | None:intergenic | 45.0% | |
| AGTACTTGAGAGTGAAGGGA+AGG | + | chr4.1:46649591-46649610 | MS.gene73644:CDS | 45.0% | |
| ATGGGCAAGTTTAAGGGCAA+TGG | + | chr4.1:46648371-46648390 | MS.gene73644:CDS | 45.0% | |
| ATTGCCCTTAAACTTGCCCA+TGG | - | chr4.1:46648372-46648391 | None:intergenic | 45.0% | |
| CACAGATGGTTTCCAGATAG+TGG | + | chr4.1:46649772-46649791 | MS.gene73644:intron | 45.0% | |
| CAGTTTCGTTACGATGCTGA+TGG | + | chr4.1:46648035-46648054 | MS.gene73644:intron | 45.0% | |
| CCACAAAACAACTGCAATGG+AGG | - | chr4.1:46648754-46648773 | None:intergenic | 45.0% | |
| CTGTGCTAAATAGCGTATCG+CGG | - | chr4.1:46649757-46649776 | None:intergenic | 45.0% | |
| CTTCCTGGTATGATCAAGTC+AGG | + | chr4.1:46650178-46650197 | MS.gene73644:CDS | 45.0% | |
| GAGAACCCTGTTGTCGAATA+TGG | + | chr4.1:46648005-46648024 | MS.gene73644:intron | 45.0% | |
| TCACACAATCAGCACAATGG+TGG | + | chr4.1:46648925-46648944 | MS.gene73644:intron | 45.0% | |
| TTTAGAGGTCTTCGCGATTG+CGG | - | chr4.1:46648145-46648164 | None:intergenic | 45.0% | |
| ! | TCTCCTGACTTGATCATACC+AGG | - | chr4.1:46650184-46650203 | None:intergenic | 45.0% |
| ! | TCTGAAGTCTTCACTGCTGA+TGG | + | chr4.1:46648489-46648508 | MS.gene73644:CDS | 45.0% |
| ! | TCTGGGATTGACAATAGCTG+AGG | - | chr4.1:46649869-46649888 | None:intergenic | 45.0% |
| !! | ATTATAGGAGGTGGTGTTGC+TGG | + | chr4.1:46647448-46647467 | MS.gene73644:CDS | 45.0% |
| !! | CCTCCATTGCAGTTGTTTTG+TGG | + | chr4.1:46648751-46648770 | MS.gene73644:intron | 45.0% |
| !!! | ATGTTTTGGTCAGGGGAACT+CGG | - | chr4.1:46647677-46647696 | None:intergenic | 45.0% |
| !!! | CGTTCAGTTTTGATTGTCGG+TGG | + | chr4.1:46649224-46649243 | MS.gene73644:CDS | 45.0% |
| !!! | GTCTTTCGGTCCTTGTTTTG+GGG | - | chr4.1:46648569-46648588 | None:intergenic | 45.0% |
| !!! | TCAGTTTTGATTGTCGGTGG+AGG | + | chr4.1:46649227-46649246 | MS.gene73644:CDS | 45.0% |
| ACGCTGCTTAAGCCACTATC+TGG | - | chr4.1:46649787-46649806 | None:intergenic | 50.0% | |
| CGATCTCGATTGCAGCATCA+AGG | - | chr4.1:46648795-46648814 | None:intergenic | 50.0% | |
| CGGAATCTGTCCCCAAAACA+AGG | + | chr4.1:46648556-46648575 | MS.gene73644:CDS | 50.0% | |
| CTAAGCCATGCTGTAGCAAG+TGG | - | chr4.1:46649518-46649537 | None:intergenic | 50.0% | |
| CTGAGGTCAATCCCAGATAG+CGG | - | chr4.1:46649852-46649871 | None:intergenic | 50.0% | |
| GGCAAGTTTAAGGGCAATGG+TGG | + | chr4.1:46648374-46648393 | MS.gene73644:CDS | 50.0% | |
| TCAATCAGGGTTTCAAGCCG+TGG | + | chr4.1:46648673-46648692 | MS.gene73644:intron | 50.0% | |
| TGGAGCCATCCTTTGCAGAA+AGG | + | chr4.1:46648394-46648413 | MS.gene73644:CDS | 50.0% | |
| TGGATTGAGATTGGACGGTC+CGG | - | chr4.1:46649030-46649049 | None:intergenic | 50.0% | |
| ! | GGAAACCACTTGCTACAGCA+TGG | + | chr4.1:46649510-46649529 | MS.gene73644:CDS | 50.0% |
| !! | GACGGTCCGGATTTCAAGTT+CGG | - | chr4.1:46649017-46649036 | None:intergenic | 50.0% |
| ATTGTCGGTGGAGGTCCAAC+TGG | + | chr4.1:46649236-46649255 | MS.gene73644:CDS | 55.0% | |
| CAAGGATCGCTACACGACCA+CGG | - | chr4.1:46648693-46648712 | None:intergenic | 55.0% | |
| CGAGCTAGCAGCAGAGATTG+CGG | + | chr4.1:46649262-46649281 | MS.gene73644:CDS | 55.0% | |
| TGCAGCTGCAATTGCTGTCG+TGG | + | chr4.1:46648201-46648220 | MS.gene73644:intron | 55.0% | |
| GCTGCTAGCTCGACACCAGT+TGG | - | chr4.1:46649254-46649273 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 46647427 | 46650264 | 46647427 | ID=MS.gene73644 |
| chr4.1 | mRNA | 46647427 | 46650264 | 46647427 | ID=MS.gene73644.t1;Parent=MS.gene73644 |
| chr4.1 | exon | 46647427 | 46647524 | 46647427 | ID=MS.gene73644.t1.exon1;Parent=MS.gene73644.t1 |
| chr4.1 | CDS | 46647427 | 46647524 | 46647427 | ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1 |
| chr4.1 | exon | 46648350 | 46648606 | 46648350 | ID=MS.gene73644.t1.exon2;Parent=MS.gene73644.t1 |
| chr4.1 | CDS | 46648350 | 46648606 | 46648350 | ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1 |
| chr4.1 | exon | 46649201 | 46649652 | 46649201 | ID=MS.gene73644.t1.exon3;Parent=MS.gene73644.t1 |
| chr4.1 | CDS | 46649201 | 46649652 | 46649201 | ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1 |
| chr4.1 | exon | 46649989 | 46650264 | 46649989 | ID=MS.gene73644.t1.exon4;Parent=MS.gene73644.t1 |
| chr4.1 | CDS | 46649989 | 46650264 | 46649989 | ID=cds.MS.gene73644.t1;Parent=MS.gene73644.t1 |
| Gene Sequence |
| Protein sequence |
