Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88229.t1 | KEH29850.1 | 98.3 | 120 | 2 | 0 | 1 | 120 | 44 | 163 | 3.30E-55 | 224.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88229.t1 | Q9ZUX4 | 56.6 | 122 | 41 | 4 | 1 | 119 | 1 | 113 | 1.1e-22 | 107.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88229.t1 | I3T5P2 | 98.3 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 2.4e-55 | 224.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene88229 | 0.804957 | 1.68E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene88229 | 0.812686 | 3.74E-51 | -1.69E-46 |
| MS.gene049382 | MS.gene88229 | 0.811485 | 6.84E-51 | -1.69E-46 |
| MS.gene049756 | MS.gene88229 | 0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene88229 | 0.803991 | 2.68E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene88229 | 0.810418 | 1.16E-50 | -1.69E-46 |
| MS.gene049915 | MS.gene88229 | 0.8096 | 1.75E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene88229 | 0.88637 | 3.63E-72 | -1.69E-46 |
| MS.gene050303 | MS.gene88229 | 0.808225 | 3.44E-50 | -1.69E-46 |
| MS.gene050320 | MS.gene88229 | 0.810861 | 9.34E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene88229 | 0.818123 | 2.31E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene88229 | 0.832912 | 7.21E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene88229 | 0.837567 | 4.82E-57 | -1.69E-46 |
| MS.gene050724 | MS.gene88229 | 0.836734 | 7.87E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene88229 | 0.824188 | 9.24E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene88229 | 0.846404 | 2.22E-59 | -1.69E-46 |
| MS.gene051241 | MS.gene88229 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene88229 | 0.830496 | 2.84E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene88229 | 0.84516 | 4.83E-59 | -1.69E-46 |
| MS.gene051328 | MS.gene88229 | 0.817883 | 2.62E-52 | -1.69E-46 |
| MS.gene051349 | MS.gene88229 | 0.843121 | 1.70E-58 | -1.69E-46 |
| MS.gene05134 | MS.gene88229 | 0.800555 | 1.36E-48 | -1.69E-46 |
| MS.gene051577 | MS.gene88229 | 0.800483 | 1.41E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene88229 | 0.836152 | 1.11E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene88229 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene051746 | MS.gene88229 | 0.837154 | 6.15E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene88229 | 0.827673 | 1.37E-54 | -1.69E-46 |
| MS.gene051757 | MS.gene88229 | 0.851079 | 1.12E-60 | -1.69E-46 |
| MS.gene051903 | MS.gene88229 | 0.83378 | 4.38E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene88229 | 0.826599 | 2.48E-54 | -1.69E-46 |
| MS.gene052202 | MS.gene88229 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene88229 | 0.803062 | 4.17E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene88229 | 0.842976 | 1.86E-58 | -1.69E-46 |
| MS.gene052302 | MS.gene88229 | 0.859001 | 5.59E-63 | -1.69E-46 |
| MS.gene052376 | MS.gene88229 | 0.861702 | 8.52E-64 | -1.69E-46 |
| MS.gene052856 | MS.gene88229 | 0.81792 | 2.57E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene88229 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene88229 | 0.850739 | 1.40E-60 | -1.69E-46 |
| MS.gene053216 | MS.gene88229 | 0.831049 | 2.08E-55 | -1.69E-46 |
| MS.gene053437 | MS.gene88229 | 0.826719 | 2.33E-54 | -1.69E-46 |
| MS.gene053630 | MS.gene88229 | 0.806496 | 8.00E-50 | -1.69E-46 |
| MS.gene055133 | MS.gene88229 | 0.805025 | 1.63E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene88229 | 0.801166 | 1.02E-48 | -1.69E-46 |
| MS.gene055174 | MS.gene88229 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene88229 | 0.842128 | 3.12E-58 | -1.69E-46 |
| MS.gene055509 | MS.gene88229 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene88229 | -0.81538 | 9.52E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene88229 | 0.830811 | 2.38E-55 | -1.69E-46 |
| MS.gene056601 | MS.gene88229 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene88229 | 0.87771 | 5.05E-69 | -1.69E-46 |
| MS.gene056760 | MS.gene88229 | 0.849875 | 2.44E-60 | -1.69E-46 |
| MS.gene057057 | MS.gene88229 | 0.846332 | 2.32E-59 | -1.69E-46 |
| MS.gene057079 | MS.gene88229 | 0.815574 | 8.62E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene88229 | 0.815714 | 8.03E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene88229 | 0.867941 | 9.44E-66 | -1.69E-46 |
| MS.gene057234 | MS.gene88229 | 0.862115 | 6.37E-64 | -1.69E-46 |
| MS.gene057260 | MS.gene88229 | 0.838858 | 2.24E-57 | -1.69E-46 |
| MS.gene057754 | MS.gene88229 | 0.808277 | 3.35E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene88229 | 0.819797 | 9.62E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene88229 | 0.808979 | 2.37E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene88229 | 0.861038 | 1.36E-63 | -1.69E-46 |
| MS.gene058084 | MS.gene88229 | 0.825833 | 3.78E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene88229 | 0.857671 | 1.39E-62 | -1.69E-46 |
| MS.gene058201 | MS.gene88229 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene88229 | 0.862113 | 6.38E-64 | -1.69E-46 |
| MS.gene058906 | MS.gene88229 | 0.909256 | 6.96E-82 | -1.69E-46 |
| MS.gene059249 | MS.gene88229 | 0.826529 | 2.58E-54 | -1.69E-46 |
| MS.gene059898 | MS.gene88229 | 0.860263 | 2.33E-63 | -1.69E-46 |
| MS.gene06001 | MS.gene88229 | 0.87212 | 4.06E-67 | -1.69E-46 |
| MS.gene060165 | MS.gene88229 | 0.850686 | 1.45E-60 | -1.69E-46 |
| MS.gene060429 | MS.gene88229 | 0.81007 | 1.38E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene88229 | 0.805403 | 1.36E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene88229 | 0.835374 | 1.74E-56 | -1.69E-46 |
| MS.gene060619 | MS.gene88229 | 0.822481 | 2.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88229.t1 | MTR_4g052910 | 98.333 | 120 | 2 | 0 | 1 | 120 | 44 | 163 | 1.15e-82 | 239 |
| MS.gene88229.t1 | MTR_4g052910 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 1.26e-82 | 237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88229.t1 | AT2G27730 | 58.197 | 122 | 39 | 5 | 1 | 119 | 1 | 113 | 5.15e-30 | 104 |
| MS.gene88229.t1 | AT2G27730 | 58.197 | 122 | 39 | 5 | 1 | 119 | 1 | 113 | 5.15e-30 | 104 |
| MS.gene88229.t1 | AT2G27730 | 58.197 | 122 | 39 | 5 | 1 | 119 | 1 | 113 | 5.15e-30 | 104 |
| MS.gene88229.t1 | AT2G27730 | 58.197 | 122 | 39 | 5 | 1 | 119 | 1 | 113 | 5.15e-30 | 104 |
Find 37 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTTGCAGTGCCTTTA+AGG | 0.112066 | 4.4:-49387625 | None:intergenic |
| CTTCAATCCTCCTGCACTTC+TGG | 0.200917 | 4.4:-49387647 | None:intergenic |
| GCCTTAGGTTGGTACCTTAA+AGG | 0.213610 | 4.4:+49387611 | MS.gene88229:CDS |
| CCTGCAGCTGGTGTTGCTTC+TGG | 0.232336 | 4.4:-49387461 | None:intergenic |
| AGTGACAAATACCGGAATTA+TGG | 0.295334 | 4.4:+49387557 | MS.gene88229:CDS |
| GCAACACCAGCTGCAGGTTC+AGG | 0.372347 | 4.4:+49387467 | MS.gene88229:CDS |
| GCTGGTGTTGCTTCTGGTTG+AGG | 0.375661 | 4.4:-49387455 | None:intergenic |
| GAAAGCTGAGCAAGAGAAGT+TGG | 0.381787 | 4.4:+49384749 | MS.gene88229:intron |
| GTATTTGTCACTTGAAACTT+TGG | 0.390932 | 4.4:-49387546 | None:intergenic |
| AGGCTATTTAGCAGTGGCTC+TGG | 0.405468 | 4.4:+49383489 | MS.gene88229:CDS |
| AGTGGCTCTGGGAAAGTTCT+TGG | 0.406187 | 4.4:+49383501 | MS.gene88229:CDS |
| TATTTGTCACTTGAAACTTT+GGG | 0.432133 | 4.4:-49387545 | None:intergenic |
| CGGAATTATGGAGTCGTAGC+TGG | 0.436209 | 4.4:+49387569 | MS.gene88229:CDS |
| CAGCTACGACTCCATAATTC+CGG | 0.436283 | 4.4:-49387568 | None:intergenic |
| ATGTCCAGAGCCACTTGGTT+TGG | 0.438617 | 4.4:-49387507 | None:intergenic |
| TGCAAAGAAGCCAGAAGTGC+AGG | 0.445155 | 4.4:+49387637 | MS.gene88229:CDS |
| TGCGGAAAATGCTTACTTCA+AGG | 0.458195 | 4.4:+49383539 | MS.gene88229:CDS |
| CAGCAAGATTTGCATCTAGA+AGG | 0.476156 | 4.4:+49383469 | MS.gene88229:CDS |
| GGCTATTTAGCAGTGGCTCT+GGG | 0.480604 | 4.4:+49383490 | MS.gene88229:CDS |
| GATGCCAAACCAAGTGGCTC+TGG | 0.486204 | 4.4:+49387503 | MS.gene88229:CDS |
| GTTGGAGAAGCTTGCTCGCA+AGG | 0.496581 | 4.4:+49384767 | MS.gene88229:CDS |
| TCTGGACATTCTGATACATC+AGG | 0.522144 | 4.4:+49387521 | MS.gene88229:CDS |
| AAGTTTCAAGTGACAAATAC+CGG | 0.523388 | 4.4:+49387549 | MS.gene88229:CDS |
| AGAGCCACTTGGTTTGGCAT+CGG | 0.530012 | 4.4:-49387501 | None:intergenic |
| GCCTTTAAGGTACCAACCTA+AGG | 0.543907 | 4.4:-49387612 | None:intergenic |
| CTCTGGGAAAGTTCTTGGTG+AGG | 0.550551 | 4.4:+49383506 | MS.gene88229:CDS |
| CCAGAAGCAACACCAGCTGC+AGG | 0.553579 | 4.4:+49387461 | MS.gene88229:CDS |
| AACTGACAGCAATGGCAACA+CGG | 0.581700 | 4.4:+49383442 | None:intergenic |
| ACTGACAGCAATGGCAACAC+GGG | 0.584119 | 4.4:+49383443 | None:intergenic |
| TGGGAAAGTTCTTGGTGAGG+AGG | 0.587276 | 4.4:+49383509 | MS.gene88229:CDS |
| GAACCACCTGAACCTGCAGC+TGG | 0.596837 | 4.4:-49387473 | None:intergenic |
| TCAGAATGTCCAGAGCCACT+TGG | 0.611946 | 4.4:-49387512 | None:intergenic |
| ACACCAGCTGCAGGTTCAGG+TGG | 0.626643 | 4.4:+49387470 | MS.gene88229:CDS |
| AAAGAAGCCAGAAGTGCAGG+AGG | 0.635650 | 4.4:+49387640 | MS.gene88229:CDS |
| GACAGCAATGGCAACACGGG+TGG | 0.644840 | 4.4:+49383446 | None:intergenic |
| TCTAGAAGGCTATTTAGCAG+TGG | 0.663582 | 4.4:+49383483 | MS.gene88229:CDS |
| GTAACCGATGCCAAACCAAG+TGG | 0.684341 | 4.4:+49387497 | MS.gene88229:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAACTTGAAAAAA+TGG | + | chr4.4:49386823-49386842 | MS.gene88229:intron | 10.0% |
| !! | TAAATTATAATCATCATTTA+TGG | - | chr4.4:49386106-49386125 | None:intergenic | 10.0% |
| !!! | TCTTTCTTTTATTTTTTTTT+TGG | + | chr4.4:49387297-49387316 | MS.gene88229:intron | 10.0% |
| !! | AATATAGTTTAATATGTACA+GGG | - | chr4.4:49386173-49386192 | None:intergenic | 15.0% |
| !! | AATTTCAATTTCCTAATAAA+CGG | - | chr4.4:49385760-49385779 | None:intergenic | 15.0% |
| !! | GAAAAACAGATAAAATTAAA+GGG | + | chr4.4:49385148-49385167 | MS.gene88229:intron | 15.0% |
| !! | GAAATAAATTGCTAATTATT+TGG | - | chr4.4:49387039-49387058 | None:intergenic | 15.0% |
| !! | TAATATAGTTTAATATGTAC+AGG | - | chr4.4:49386174-49386193 | None:intergenic | 15.0% |
| !!! | AAATTTTTATCAGTTTTTGT+GGG | + | chr4.4:49384927-49384946 | MS.gene88229:intron | 15.0% |
| !!! | CATTTTATTATAACCTTAAA+AGG | - | chr4.4:49386989-49387008 | None:intergenic | 15.0% |
| !!! | TATTTCAAATGATTTCATTT+TGG | + | chr4.4:49384169-49384188 | MS.gene88229:intron | 15.0% |
| !!! | TTTATTTTTGGGATTTAAAT+GGG | - | chr4.4:49385658-49385677 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTGGGATTTAAA+TGG | - | chr4.4:49385659-49385678 | None:intergenic | 15.0% |
| !! | AAAAAAAAACTGCATCAAAA+AGG | - | chr4.4:49384108-49384127 | None:intergenic | 20.0% |
| !! | AATATGATACAAGATAGATA+TGG | + | chr4.4:49385988-49386007 | MS.gene88229:intron | 20.0% |
| !! | AATTTGCATGATATCTTTAT+AGG | - | chr4.4:49386201-49386220 | None:intergenic | 20.0% |
| !! | ACATTTAGTACTTATTTGAT+GGG | - | chr4.4:49385208-49385227 | None:intergenic | 20.0% |
| !! | ATAATCATCATTTATGGATA+AGG | - | chr4.4:49386100-49386119 | None:intergenic | 20.0% |
| !! | ATATAGTTTAATATGTACAG+GGG | - | chr4.4:49386172-49386191 | None:intergenic | 20.0% |
| !! | ATATGATACAAGATAGATAT+GGG | + | chr4.4:49385989-49386008 | MS.gene88229:intron | 20.0% |
| !! | ATTTCAATTTCCTAATAAAC+GGG | - | chr4.4:49385759-49385778 | None:intergenic | 20.0% |
| !! | ATTTGCATGATATCTTTATA+GGG | - | chr4.4:49386200-49386219 | None:intergenic | 20.0% |
| !! | CAATGAAATGTATTTAAGTA+AGG | + | chr4.4:49386756-49386775 | MS.gene88229:intron | 20.0% |
| !! | CATATTAAGTATAAGTATGT+GGG | - | chr4.4:49385974-49385993 | None:intergenic | 20.0% |
| !! | CTACTAAATGAAATACTTAT+AGG | + | chr4.4:49387083-49387102 | MS.gene88229:intron | 20.0% |
| !! | GGAAAAACAGATAAAATTAA+AGG | + | chr4.4:49385147-49385166 | MS.gene88229:intron | 20.0% |
| !! | GTATGATATGTATATGTAAT+CGG | + | chr4.4:49386413-49386432 | MS.gene88229:intron | 20.0% |
| !! | GTATTTCATTTAGTAGAAAT+AGG | - | chr4.4:49387079-49387098 | None:intergenic | 20.0% |
| !! | TACATTTAGTACTTATTTGA+TGG | - | chr4.4:49385209-49385228 | None:intergenic | 20.0% |
| !! | TCATATTAAGTATAAGTATG+TGG | - | chr4.4:49385975-49385994 | None:intergenic | 20.0% |
| !! | TCCCAAAAATAAAATACTAA+AGG | + | chr4.4:49385665-49385684 | MS.gene88229:intron | 20.0% |
| !! | TGTAAAAATGAAACGATTAA+TGG | - | chr4.4:49385894-49385913 | None:intergenic | 20.0% |
| !!! | AAATGATTTCATTTTGGATA+TGG | + | chr4.4:49384175-49384194 | MS.gene88229:intron | 20.0% |
| !!! | AAGAGATATTTTTTAGCAAT+TGG | + | chr4.4:49386793-49386812 | MS.gene88229:intron | 20.0% |
| !!! | AAGCTATTTCTTAGAATTTT+TGG | - | chr4.4:49384414-49384433 | None:intergenic | 20.0% |
| !!! | ATATTATCACTCTATCTTTT+GGG | - | chr4.4:49385930-49385949 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAATCCTAAATAG+CGG | + | chr4.4:49384995-49385014 | MS.gene88229:intron | 20.0% |
| !!! | CAAAGATTTTAAACATGTTT+TGG | - | chr4.4:49383948-49383967 | None:intergenic | 20.0% |
| !!! | GAAATTTTTATCAGTTTTTG+TGG | + | chr4.4:49384926-49384945 | MS.gene88229:intron | 20.0% |
| !!! | GCCTTTAGTATTTTATTTTT+GGG | - | chr4.4:49385669-49385688 | None:intergenic | 20.0% |
| !!! | TACTCTTTTGATATAAATCT+TGG | + | chr4.4:49386389-49386408 | MS.gene88229:intron | 20.0% |
| !!! | TATTTCTTAGAATTTTTGGT+TGG | - | chr4.4:49384410-49384429 | None:intergenic | 20.0% |
| !!! | TGCCTTTAGTATTTTATTTT+TGG | - | chr4.4:49385670-49385689 | None:intergenic | 20.0% |
| !!! | TTAATCGTTTCATTTTTACA+TGG | + | chr4.4:49385894-49385913 | MS.gene88229:intron | 20.0% |
| !!! | TTGTCATTTTGTTTACTTTT+AGG | - | chr4.4:49385270-49385289 | None:intergenic | 20.0% |
| !!! | TTTATTTTCGTAATTGCTAT+CGG | + | chr4.4:49383611-49383630 | MS.gene88229:intron | 20.0% |
| !!! | TTTTTAAAAAGGAAATGTCA+TGG | + | chr4.4:49384015-49384034 | MS.gene88229:intron | 20.0% |
| ! | AAAAGAAAGAGAAGAGAAAT+GGG | - | chr4.4:49387287-49387306 | None:intergenic | 25.0% |
| ! | AATAACATGGTTATTGAGAA+AGG | - | chr4.4:49386702-49386721 | None:intergenic | 25.0% |
| ! | AATGCTTAACATTAAGTTCA+AGG | - | chr4.4:49387417-49387436 | None:intergenic | 25.0% |
| ! | AGAATAAGAGATGAAATTTG+AGG | - | chr4.4:49384798-49384817 | None:intergenic | 25.0% |
| ! | ATATTATCTTGTTCATCACT+TGG | + | chr4.4:49385380-49385399 | MS.gene88229:intron | 25.0% |
| ! | ATCATCTAGTTACAATAACA+TGG | - | chr4.4:49386715-49386734 | None:intergenic | 25.0% |
| ! | ATGTATATGTAATCGGATAT+GGG | + | chr4.4:49386420-49386439 | MS.gene88229:intron | 25.0% |
| ! | ATTATTATTAGTGTTGTGTC+CGG | + | chr4.4:49383728-49383747 | MS.gene88229:intron | 25.0% |
| ! | ATTCTTTATAAACACTACAC+AGG | - | chr4.4:49384341-49384360 | None:intergenic | 25.0% |
| ! | ATTGACATAAGTTAGAGAAA+CGG | - | chr4.4:49387141-49387160 | None:intergenic | 25.0% |
| ! | GAATAAGAGATGAAATTTGA+GGG | - | chr4.4:49384797-49384816 | None:intergenic | 25.0% |
| ! | GATACATAAATACTCAAAAG+TGG | + | chr4.4:49385126-49385145 | MS.gene88229:intron | 25.0% |
| ! | GATTTCCTTAAAAAAACTAG+AGG | + | chr4.4:49386365-49386384 | MS.gene88229:intron | 25.0% |
| ! | TAAAAGAAAGAGAAGAGAAA+TGG | - | chr4.4:49387288-49387307 | None:intergenic | 25.0% |
| ! | TATGTATATGTAATCGGATA+TGG | + | chr4.4:49386419-49386438 | MS.gene88229:intron | 25.0% |
| ! | TGAGTATTTATGTATCTTGT+TGG | - | chr4.4:49385122-49385141 | None:intergenic | 25.0% |
| ! | TGTCATTCTAATGGTTAAAA+AGG | + | chr4.4:49383853-49383872 | MS.gene88229:intron | 25.0% |
| ! | TTCTTCTAATTTCTAACAAC+AGG | + | chr4.4:49384470-49384489 | MS.gene88229:intron | 25.0% |
| !! | ATAAACTAAAGCATGTTTTG+AGG | - | chr4.4:49383568-49383587 | None:intergenic | 25.0% |
| !! | ATCTAAAATGAAAATGCTTC+AGG | - | chr4.4:49386512-49386531 | None:intergenic | 25.0% |
| !! | ATGTGACAAAAAGAAAGTAT+CGG | - | chr4.4:49387191-49387210 | None:intergenic | 25.0% |
| !! | CATATTATCACTCTATCTTT+TGG | - | chr4.4:49385931-49385950 | None:intergenic | 25.0% |
| !! | TATTTGTCACTTGAAACTTT+GGG | - | chr4.4:49387548-49387567 | None:intergenic | 25.0% |
| !!! | AGGTGTTTTATTTGTAATTG+GGG | + | chr4.4:49383795-49383814 | MS.gene88229:intron | 25.0% |
| !!! | AGTATCCTCTAGTTTTTTTA+AGG | - | chr4.4:49386373-49386392 | None:intergenic | 25.0% |
| !!! | ATACATGTTGATTTTGTTAG+TGG | - | chr4.4:49386239-49386258 | None:intergenic | 25.0% |
| !!! | GAGGTGTTTTATTTGTAATT+GGG | + | chr4.4:49383794-49383813 | MS.gene88229:intron | 25.0% |
| !!! | TGAGGTGTTTTATTTGTAAT+TGG | + | chr4.4:49383793-49383812 | MS.gene88229:intron | 25.0% |
| AAAATGCTATAGCGGTATAA+AGG | + | chr4.4:49385037-49385056 | MS.gene88229:intron | 30.0% | |
| AAATCATTGACCCATATGTT+TGG | - | chr4.4:49386350-49386369 | None:intergenic | 30.0% | |
| AACTATGTGTAGGATAACAT+TGG | - | chr4.4:49384896-49384915 | None:intergenic | 30.0% | |
| AAGGCCACAATTAAGAAATT+AGG | - | chr4.4:49384253-49384272 | None:intergenic | 30.0% | |
| AATTGTGATCTCTTAGTGTT+AGG | + | chr4.4:49385802-49385821 | MS.gene88229:intron | 30.0% | |
| ACATGCTTGTATAAATACGA+AGG | + | chr4.4:49384580-49384599 | MS.gene88229:intron | 30.0% | |
| ACTATGTGTAGGATAACATT+GGG | - | chr4.4:49384895-49384914 | None:intergenic | 30.0% | |
| AGGCCACAATTAAGAAATTA+GGG | - | chr4.4:49384252-49384271 | None:intergenic | 30.0% | |
| ATGGCTAATATACTGGAATA+GGG | + | chr4.4:49384194-49384213 | MS.gene88229:intron | 30.0% | |
| CAAGATAATATTGATGCATG+TGG | - | chr4.4:49385371-49385390 | None:intergenic | 30.0% | |
| CACATGACAAAAGCAAATTT+CGG | - | chr4.4:49386629-49386648 | None:intergenic | 30.0% | |
| CATACTACAAGAAATAACAG+TGG | - | chr4.4:49387374-49387393 | None:intergenic | 30.0% | |
| CATTTAGTAGAAATAGGAAG+TGG | - | chr4.4:49387073-49387092 | None:intergenic | 30.0% | |
| GAATCGTATTCCAAACATAT+GGG | + | chr4.4:49386337-49386356 | MS.gene88229:intron | 30.0% | |
| GCCATATCTATAAGTAATGT+GGG | - | chr4.4:49384319-49384338 | None:intergenic | 30.0% | |
| TATGGCTAATATACTGGAAT+AGG | + | chr4.4:49384193-49384212 | MS.gene88229:intron | 30.0% | |
| TATTTAAGTAAGGTGACACA+AGG | + | chr4.4:49386766-49386785 | MS.gene88229:intron | 30.0% | |
| TCCCACATTACTTATAGATA+TGG | + | chr4.4:49384315-49384334 | MS.gene88229:intron | 30.0% | |
| TGAAGTTTGTACACAGTTAA+CGG | + | chr4.4:49385827-49385846 | MS.gene88229:intron | 30.0% | |
| TGGATAAGGTATGTCTTAAT+CGG | - | chr4.4:49386086-49386105 | None:intergenic | 30.0% | |
| TTAGAAATTAGAAGAACCCA+AGG | - | chr4.4:49384466-49384485 | None:intergenic | 30.0% | |
| TTTGGATATGGCTAATATAC+TGG | + | chr4.4:49384187-49384206 | MS.gene88229:intron | 30.0% | |
| ! | AAGTTTCAAGTGACAAATAC+CGG | + | chr4.4:49387549-49387568 | MS.gene88229:CDS | 30.0% |
| ! | AATAAAAGTGTGATAGTTGC+AGG | - | chr4.4:49387349-49387368 | None:intergenic | 30.0% |
| ! | AATGGTTAAAAAGGTGCATA+TGG | + | chr4.4:49383862-49383881 | MS.gene88229:intron | 30.0% |
| ! | GTATTTGTCACTTGAAACTT+TGG | - | chr4.4:49387549-49387568 | None:intergenic | 30.0% |
| ! | TAAAAGGTATATAACCCCAA+AGG | - | chr4.4:49386973-49386992 | None:intergenic | 30.0% |
| ! | TATACCGCTATAGCATTTTT+GGG | - | chr4.4:49385036-49385055 | None:intergenic | 30.0% |
| ! | TCACAATATGATGATGAACT+TGG | + | chr4.4:49386270-49386289 | MS.gene88229:intron | 30.0% |
| ! | TGGCACTATAACAATTTTTG+CGG | + | chr4.4:49387589-49387608 | MS.gene88229:CDS | 30.0% |
| ! | TTATACCGCTATAGCATTTT+TGG | - | chr4.4:49385037-49385056 | None:intergenic | 30.0% |
| ! | TTGGGGTTATATACCTTTTA+AGG | + | chr4.4:49386973-49386992 | MS.gene88229:intron | 30.0% |
| ! | TTTTTATCAGTTTTTGTGGG+TGG | + | chr4.4:49384930-49384949 | MS.gene88229:intron | 30.0% |
| ! | TTTTTGTAACAATGTACCCA+TGG | - | chr4.4:49386039-49386058 | None:intergenic | 30.0% |
| !! | AAATTTGCTTTTGTCATGTG+TGG | + | chr4.4:49386629-49386648 | MS.gene88229:intron | 30.0% |
| !! | ATAGCTTTAGCCAAAGTATT+TGG | + | chr4.4:49384427-49384446 | MS.gene88229:intron | 30.0% |
| !! | ATCGTTTCATTTTTACATGG+AGG | + | chr4.4:49385897-49385916 | MS.gene88229:intron | 30.0% |
| !! | TAGCTTTAGCCAAAGTATTT+GGG | + | chr4.4:49384428-49384447 | MS.gene88229:intron | 30.0% |
| !! | TCTGTTAGTTTGTTAGTTCA+CGG | + | chr4.4:49384518-49384537 | MS.gene88229:intron | 30.0% |
| !! | TGTGACAAAAAGAAAGTATC+GGG | - | chr4.4:49387190-49387209 | None:intergenic | 30.0% |
| !!! | AATCTTTTTCAATTGCACTG+CGG | + | chr4.4:49384821-49384840 | MS.gene88229:intron | 30.0% |
| !!! | GTCGTTTGCATTTTAACTAA+AGG | + | chr4.4:49387012-49387031 | MS.gene88229:intron | 30.0% |
| !!! | TGTTGATTTTGTTAGTGGTT+CGG | - | chr4.4:49386234-49386253 | None:intergenic | 30.0% |
| AAACCCCAAAAATGCTATAG+CGG | + | chr4.4:49385029-49385048 | MS.gene88229:intron | 35.0% | |
| AAATAAGTAAGCACCACAGA+TGG | - | chr4.4:49384718-49384737 | None:intergenic | 35.0% | |
| ACAAAAGCAAATTTCGGCAT+GGG | - | chr4.4:49386623-49386642 | None:intergenic | 35.0% | |
| ACAAGTGTGTGTTATACTTG+AGG | + | chr4.4:49383775-49383794 | MS.gene88229:intron | 35.0% | |
| AGATTGCTATAGCGAATATC+AGG | + | chr4.4:49385467-49385486 | MS.gene88229:intron | 35.0% | |
| AGTGACAAATACCGGAATTA+TGG | + | chr4.4:49387557-49387576 | MS.gene88229:CDS | 35.0% | |
| AGTTGACGATAATCATGCTT+GGG | - | chr4.4:49386885-49386904 | None:intergenic | 35.0% | |
| ATAAGTACCACCCGTTTATT+AGG | + | chr4.4:49385746-49385765 | MS.gene88229:intron | 35.0% | |
| ATACATACCATTGCATGTTC+CGG | + | chr4.4:49383824-49383843 | MS.gene88229:intron | 35.0% | |
| ATAGCGGTATAAAGGATTGT+GGG | + | chr4.4:49385045-49385064 | MS.gene88229:intron | 35.0% | |
| ATGAAGTAACATAGAGCCAT+GGG | + | chr4.4:49386020-49386039 | MS.gene88229:intron | 35.0% | |
| ATTGACATAGACACAGATAC+CGG | - | chr4.4:49383750-49383769 | None:intergenic | 35.0% | |
| CACAATTAAGAAATTAGGGG+CGG | - | chr4.4:49384248-49384267 | None:intergenic | 35.0% | |
| CATTAGAATGACAGAGAATC+CGG | - | chr4.4:49383846-49383865 | None:intergenic | 35.0% | |
| CGAATCGTATTCCAAACATA+TGG | + | chr4.4:49386336-49386355 | MS.gene88229:intron | 35.0% | |
| GACTTATGACCCAAATACTT+TGG | - | chr4.4:49384440-49384459 | None:intergenic | 35.0% | |
| GAGTTTGTCTACATCAGTTA+AGG | + | chr4.4:49384676-49384695 | MS.gene88229:intron | 35.0% | |
| GATAATATTGATGCATGTGG+TGG | - | chr4.4:49385368-49385387 | None:intergenic | 35.0% | |
| GGAACTTAGAATTGAAGATG+AGG | - | chr4.4:49385347-49385366 | None:intergenic | 35.0% | |
| GGCCACAATTAAGAAATTAG+GGG | - | chr4.4:49384251-49384270 | None:intergenic | 35.0% | |
| GGCCATATCTATAAGTAATG+TGG | - | chr4.4:49384320-49384339 | None:intergenic | 35.0% | |
| GTTCATCATCATATTGTGAG+AGG | - | chr4.4:49386269-49386288 | None:intergenic | 35.0% | |
| TACTAAAGGCAGACACTTTA+TGG | + | chr4.4:49385679-49385698 | MS.gene88229:intron | 35.0% | |
| TATAGCGGTATAAAGGATTG+TGG | + | chr4.4:49385044-49385063 | MS.gene88229:intron | 35.0% | |
| TATGAAGTAACATAGAGCCA+TGG | + | chr4.4:49386019-49386038 | MS.gene88229:intron | 35.0% | |
| TCAATTTCCTAATAAACGGG+TGG | - | chr4.4:49385756-49385775 | None:intergenic | 35.0% | |
| TCCATCAGAAAACTATGTGT+AGG | - | chr4.4:49384906-49384925 | None:intergenic | 35.0% | |
| TGCAATATTTGCACAAGCAA+TGG | - | chr4.4:49383984-49384003 | None:intergenic | 35.0% | |
| TGGGTGGAAAAATGATGAAT+CGG | + | chr4.4:49384946-49384965 | MS.gene88229:intron | 35.0% | |
| TTCATTGTGTTGGGTTTGAA+GGG | + | chr4.4:49384282-49384301 | MS.gene88229:intron | 35.0% | |
| TTGGTGTGTTCACATGATAT+AGG | + | chr4.4:49385619-49385638 | MS.gene88229:intron | 35.0% | |
| ! | ATAACAATTTTTGCGGCCTT+AGG | + | chr4.4:49387596-49387615 | MS.gene88229:CDS | 35.0% |
| ! | ATACCGCTATAGCATTTTTG+GGG | - | chr4.4:49385035-49385054 | None:intergenic | 35.0% |
| ! | TCCTACACATAGTTTTCTGA+TGG | + | chr4.4:49384902-49384921 | MS.gene88229:intron | 35.0% |
| !! | GTTGATTTTGTTAGTGGTTC+GGG | - | chr4.4:49386233-49386252 | None:intergenic | 35.0% |
| !! | TCACTCTATCTTTTGGGAAA+TGG | - | chr4.4:49385924-49385943 | None:intergenic | 35.0% |
| AACACGTTCTGCTATGGTTA+TGG | + | chr4.4:49386580-49386599 | MS.gene88229:intron | 40.0% | |
| AAGGTATATAACCCCAAAGG+TGG | - | chr4.4:49386970-49386989 | None:intergenic | 40.0% | |
| ACACAATGAAGGCAACTCAA+AGG | - | chr4.4:49384272-49384291 | None:intergenic | 40.0% | |
| CAGCAAGATTTGCATCTAGA+AGG | + | chr4.4:49383469-49383488 | MS.gene88229:CDS | 40.0% | |
| CGCCCCTAATTTCTTAATTG+TGG | + | chr4.4:49384246-49384265 | MS.gene88229:intron | 40.0% | |
| CGGATTCTCTGTCATTCTAA+TGG | + | chr4.4:49383844-49383863 | MS.gene88229:intron | 40.0% | |
| CTAACACATCCCTACAAAAC+CGG | - | chr4.4:49384385-49384404 | None:intergenic | 40.0% | |
| CTTCAAACCCAACACAATGA+AGG | - | chr4.4:49384283-49384302 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTTTGA+AGG | + | chr4.4:49384281-49384300 | MS.gene88229:intron | 40.0% | |
| GACAAAAGCAAATTTCGGCA+TGG | - | chr4.4:49386624-49386643 | None:intergenic | 40.0% | |
| GAGTTGACGATAATCATGCT+TGG | - | chr4.4:49386886-49386905 | None:intergenic | 40.0% | |
| GGGTGGAAAAATGATGAATC+GGG | + | chr4.4:49384947-49384966 | MS.gene88229:intron | 40.0% | |
| GTTAATACATGACGACGCAA+AGG | - | chr4.4:49384873-49384892 | None:intergenic | 40.0% | |
| TCATTGTGTTGGGTTTGAAG+GGG | + | chr4.4:49384283-49384302 | MS.gene88229:intron | 40.0% | |
| TCTAGAAGGCTATTTAGCAG+TGG | + | chr4.4:49383483-49383502 | MS.gene88229:CDS | 40.0% | |
| TCTGGACATTCTGATACATC+AGG | + | chr4.4:49387521-49387540 | MS.gene88229:CDS | 40.0% | |
| TGAGCAGCAATCTACTTTCT+AGG | - | chr4.4:49384548-49384567 | None:intergenic | 40.0% | |
| TGAGCTGTATGTATGATCTC+TGG | + | chr4.4:49383894-49383913 | MS.gene88229:intron | 40.0% | |
| TGAGTTGCCTTCATTGTGTT+GGG | + | chr4.4:49384273-49384292 | MS.gene88229:intron | 40.0% | |
| TGCGGAAAATGCTTACTTCA+AGG | + | chr4.4:49383539-49383558 | MS.gene88229:CDS | 40.0% | |
| ! | TCGTAATTGCTATCGGTTGA+AGG | + | chr4.4:49383618-49383637 | MS.gene88229:intron | 40.0% |
| ! | TTGAGTTGCCTTCATTGTGT+TGG | + | chr4.4:49384272-49384291 | MS.gene88229:intron | 40.0% |
| !!! | GCTATAGCATTTTTGGGGTT+TGG | - | chr4.4:49385030-49385049 | None:intergenic | 40.0% |
| AAATGGAGATGAGGAGTTGG+AGG | - | chr4.4:49385427-49385446 | None:intergenic | 45.0% | |
| AAATGTGACAAGTGGTGTGG+TGG | - | chr4.4:49387252-49387271 | None:intergenic | 45.0% | |
| AACCAGTCTCCTTTGACTGT+TGG | + | chr4.4:49386915-49386934 | MS.gene88229:intron | 45.0% | |
| AGAGAATCCGGAACATGCAA+TGG | - | chr4.4:49383834-49383853 | None:intergenic | 45.0% | |
| AGAGCGTGAAATGTGACAAG+TGG | - | chr4.4:49387260-49387279 | None:intergenic | 45.0% | |
| ATATCATCAGACTGCAGCTG+AGG | - | chr4.4:49385857-49385876 | None:intergenic | 45.0% | |
| CAAAATCATGCTTCCGCATG+CGG | + | chr4.4:49385318-49385337 | MS.gene88229:intron | 45.0% | |
| CAGCAATCTACTTTCTAGGC+AGG | - | chr4.4:49384544-49384563 | None:intergenic | 45.0% | |
| CAGCTACGACTCCATAATTC+CGG | - | chr4.4:49387571-49387590 | None:intergenic | 45.0% | |
| CCCAAAGGTGGCAAAGAAAA+GGG | - | chr4.4:49386958-49386977 | None:intergenic | 45.0% | |
| CTGCAAGTTCCAACAGTCAA+AGG | - | chr4.4:49386927-49386946 | None:intergenic | 45.0% | |
| CTGGACATGCCTTTGATTAG+AGG | - | chr4.4:49383657-49383676 | None:intergenic | 45.0% | |
| GAAAGCTGAGCAAGAGAAGT+TGG | + | chr4.4:49384749-49384768 | MS.gene88229:intron | 45.0% | |
| GCTTCTTTGCAGTGCCTTTA+AGG | - | chr4.4:49387628-49387647 | None:intergenic | 45.0% | |
| GGTTCAAACACGTTCTGCTA+TGG | + | chr4.4:49386574-49386593 | MS.gene88229:intron | 45.0% | |
| GTCCAGTGTTCAACATGTGT+CGG | + | chr4.4:49383671-49383690 | MS.gene88229:intron | 45.0% | |
| GTCCTGACACCTCTAATCAA+AGG | + | chr4.4:49383645-49383664 | MS.gene88229:intron | 45.0% | |
| GTGAAATGTGACAAGTGGTG+TGG | - | chr4.4:49387255-49387274 | None:intergenic | 45.0% | |
| GTGGAGATTGCATAACTTCG+TGG | + | chr4.4:49386648-49386667 | MS.gene88229:intron | 45.0% | |
| TATCATCAGACTGCAGCTGA+GGG | - | chr4.4:49385856-49385875 | None:intergenic | 45.0% | |
| TCCAACTCCTCATCTCCATT+TGG | + | chr4.4:49385426-49385445 | MS.gene88229:intron | 45.0% | |
| TGGGTCATAAGTCTTGCCTT+GGG | + | chr4.4:49384447-49384466 | MS.gene88229:intron | 45.0% | |
| TTCCAACAGTCAAAGGAGAC+TGG | - | chr4.4:49386920-49386939 | None:intergenic | 45.0% | |
| TTGGGTCATAAGTCTTGCCT+TGG | + | chr4.4:49384446-49384465 | MS.gene88229:intron | 45.0% | |
| TTTCTCCTCAACATGCAGAG+AGG | - | chr4.4:49384071-49384090 | None:intergenic | 45.0% | |
| ! | CAATTTTTGCGGCCTTAGGT+TGG | + | chr4.4:49387600-49387619 | MS.gene88229:CDS | 45.0% |
| ! | CCCTTTTCTTTGCCACCTTT+GGG | + | chr4.4:49386955-49386974 | MS.gene88229:intron | 45.0% |
| ! | CCTTTTCTTTGCCACCTTTG+GGG | + | chr4.4:49386956-49386975 | MS.gene88229:intron | 45.0% |
| ! | TCAGAAGCACATGCTTACCA+CGG | + | chr4.4:49386553-49386572 | MS.gene88229:intron | 45.0% |
| ! | TCCCTTTTCTTTGCCACCTT+TGG | + | chr4.4:49386954-49386973 | MS.gene88229:intron | 45.0% |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | - | chr4.4:49384370-49384389 | None:intergenic | 45.0% |
| !! | ACCTTACAAGCCGGTTTTGT+AGG | + | chr4.4:49384372-49384391 | MS.gene88229:intron | 45.0% |
| !! | AGCGGTGCTATTGACTACAT+TGG | + | chr4.4:49385600-49385619 | MS.gene88229:intron | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+GGG | + | chr4.4:49384373-49384392 | MS.gene88229:intron | 45.0% |
| !! | CGGTTTTGTAGGGATGTGTT+AGG | + | chr4.4:49384383-49384402 | MS.gene88229:intron | 45.0% |
| !! | GCCTTAGGTTGGTACCTTAA+AGG | + | chr4.4:49387611-49387630 | MS.gene88229:CDS | 45.0% |
| !! | GCCTTTAAGGTACCAACCTA+AGG | - | chr4.4:49387615-49387634 | None:intergenic | 45.0% |
| !! | TGCCTTTGATTAGAGGTGTC+AGG | - | chr4.4:49383650-49383669 | None:intergenic | 45.0% |
| !!! | AATAACAATATTTTTTAAAA+AGG | + | chr4.4:49384004-49384023 | MS.gene88229:intron | 5.0% |
| AGCAGAACGTGTTTGAACCG+TGG | - | chr4.4:49386573-49386592 | None:intergenic | 50.0% | |
| AGCTGTGCCAAATGGAGATG+AGG | - | chr4.4:49385436-49385455 | None:intergenic | 50.0% | |
| AGGCTATTTAGCAGTGGCTC+TGG | + | chr4.4:49383489-49383508 | MS.gene88229:CDS | 50.0% | |
| ATAGCGCGCTAGAGTGGAAT+AGG | - | chr4.4:49385580-49385599 | None:intergenic | 50.0% | |
| ATGTCCAGAGCCACTTGGTT+TGG | - | chr4.4:49387510-49387529 | None:intergenic | 50.0% | |
| CACCGACACATGTTGAACAC+TGG | - | chr4.4:49383676-49383695 | None:intergenic | 50.0% | |
| CAGTTAAGGTCTGTGCTTGC+TGG | + | chr4.4:49384690-49384709 | MS.gene88229:intron | 50.0% | |
| CCCCAAAGGTGGCAAAGAAA+AGG | - | chr4.4:49386959-49386978 | None:intergenic | 50.0% | |
| CGGAATTATGGAGTCGTAGC+TGG | + | chr4.4:49387569-49387588 | MS.gene88229:CDS | 50.0% | |
| GCCAAATGGAGATGAGGAGT+TGG | - | chr4.4:49385430-49385449 | None:intergenic | 50.0% | |
| GGCTATTTAGCAGTGGCTCT+GGG | + | chr4.4:49383490-49383509 | MS.gene88229:CDS | 50.0% | |
| GTAACCGATGCCAAACCAAG+TGG | + | chr4.4:49387497-49387516 | MS.gene88229:CDS | 50.0% | |
| GTCACTACAGCTGTGCCAAA+TGG | - | chr4.4:49385444-49385463 | None:intergenic | 50.0% | |
| GTTGTCACGGCTGCAAATTG+CGG | - | chr4.4:49385497-49385516 | None:intergenic | 50.0% | |
| TCAGAATGTCCAGAGCCACT+TGG | - | chr4.4:49387515-49387534 | None:intergenic | 50.0% | |
| TGCATCCTCTCTGCATGTTG+AGG | + | chr4.4:49384063-49384082 | MS.gene88229:intron | 50.0% | |
| TGGGAAAGTTCTTGGTGAGG+AGG | + | chr4.4:49383509-49383528 | MS.gene88229:CDS | 50.0% | |
| TGGTGAGGAGGAAAAAGCTG+CGG | + | chr4.4:49383521-49383540 | MS.gene88229:CDS | 50.0% | |
| TTCAGCAGTGGCAGTTGTCA+CGG | - | chr4.4:49385510-49385529 | None:intergenic | 50.0% | |
| TTGTGTTGGGTTTGAAGGGG+TGG | + | chr4.4:49384286-49384305 | MS.gene88229:intron | 50.0% | |
| ! | AAAGAAGCCAGAAGTGCAGG+AGG | + | chr4.4:49387640-49387659 | MS.gene88229:CDS | 50.0% |
| ! | CTCTGGGAAAGTTCTTGGTG+AGG | + | chr4.4:49383506-49383525 | MS.gene88229:CDS | 50.0% |
| ! | TGCAAAGAAGCCAGAAGTGC+AGG | + | chr4.4:49387637-49387656 | MS.gene88229:CDS | 50.0% |
| !! | AGAGCCACTTGGTTTGGCAT+CGG | - | chr4.4:49387504-49387523 | None:intergenic | 50.0% |
| !! | AGTGGCTCTGGGAAAGTTCT+TGG | + | chr4.4:49383501-49383520 | MS.gene88229:CDS | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr4.4:49384371-49384390 | None:intergenic | 50.0% |
| !! | CCCTACAAAACCGGCTTGTA+AGG | - | chr4.4:49384376-49384395 | None:intergenic | 50.0% |
| ACAACTGCCACTGCTGAAGG+TGG | + | chr4.4:49385512-49385531 | MS.gene88229:intron | 55.0% | |
| AGAGTGGAATAGGAGGGCAG+TGG | - | chr4.4:49385570-49385589 | None:intergenic | 55.0% | |
| CATGCAGAGAGGATGCAGAG+TGG | - | chr4.4:49384060-49384079 | None:intergenic | 55.0% | |
| CGCGCTAGAGTGGAATAGGA+GGG | - | chr4.4:49385576-49385595 | None:intergenic | 55.0% | |
| GATGCCAAACCAAGTGGCTC+TGG | + | chr4.4:49387503-49387522 | MS.gene88229:CDS | 55.0% | |
| GCAACCCTCACCTTACAAGC+CGG | + | chr4.4:49384363-49384382 | MS.gene88229:intron | 55.0% | |
| GGAATAGGAGGGCAGTGGTA+GGG | - | chr4.4:49385565-49385584 | None:intergenic | 55.0% | |
| GTGACAACTGCCACTGCTGA+AGG | + | chr4.4:49385509-49385528 | MS.gene88229:intron | 55.0% | |
| TCCACTCTAGCGCGCTATAG+CGG | + | chr4.4:49385582-49385601 | MS.gene88229:intron | 55.0% | |
| TGGAATAGGAGGGCAGTGGT+AGG | - | chr4.4:49385566-49385585 | None:intergenic | 55.0% | |
| TGGAGATGAGGAGTTGGAGG+TGG | - | chr4.4:49385424-49385443 | None:intergenic | 55.0% | |
| ! | GTTGGAGAAGCTTGCTCGCA+AGG | + | chr4.4:49384767-49384786 | MS.gene88229:CDS | 55.0% |
| !! | GCTGGTGTTGCTTCTGGTTG+AGG | - | chr4.4:49387458-49387477 | None:intergenic | 55.0% |
| !! | GTGCTTGCTGGTTCCATCTG+TGG | + | chr4.4:49384702-49384721 | MS.gene88229:intron | 55.0% |
| ACACCAGCTGCAGGTTCAGG+TGG | + | chr4.4:49387470-49387489 | MS.gene88229:CDS | 60.0% | |
| ACCGCTATAGCGCGCTAGAG+TGG | - | chr4.4:49385586-49385605 | None:intergenic | 60.0% | |
| ACTGCTGAAGGTGGCTCGCA+GGG | + | chr4.4:49385521-49385540 | MS.gene88229:intron | 60.0% | |
| AGGAGGGCAGTGGTAGGGTT+TGG | - | chr4.4:49385560-49385579 | None:intergenic | 60.0% | |
| CCAGAAGCAACACCAGCTGC+AGG | + | chr4.4:49387461-49387480 | MS.gene88229:CDS | 60.0% | |
| GAACCACCTGAACCTGCAGC+TGG | - | chr4.4:49387476-49387495 | None:intergenic | 60.0% | |
| GAAGATGAGGCAGCCGCATG+CGG | - | chr4.4:49385334-49385353 | None:intergenic | 60.0% | |
| GCAACACCAGCTGCAGGTTC+AGG | + | chr4.4:49387467-49387486 | MS.gene88229:CDS | 60.0% | |
| GCGCGCTAGAGTGGAATAGG+AGG | - | chr4.4:49385577-49385596 | None:intergenic | 60.0% | |
| ! | GGTGCTACGCGCCGCTATTT+AGG | - | chr4.4:49385009-49385028 | None:intergenic | 60.0% |
| !! | CCTGCAGCTGGTGTTGCTTC+TGG | - | chr4.4:49387464-49387483 | None:intergenic | 60.0% |
| CACTGCTGAAGGTGGCTCGC+AGG | + | chr4.4:49385520-49385539 | MS.gene88229:intron | 65.0% | |
| CTGCGAGCCACCTTCAGCAG+TGG | - | chr4.4:49385522-49385541 | None:intergenic | 65.0% | |
| GAAGGTGGCTCGCAGGGAGA+TGG | + | chr4.4:49385527-49385546 | MS.gene88229:intron | 65.0% | |
| GGCAGTGGTAGGGTTTGGCG+CGG | - | chr4.4:49385555-49385574 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 49383453 | 49387667 | 49383453 | ID=MS.gene88229 |
| chr4.4 | mRNA | 49383453 | 49387667 | 49383453 | ID=MS.gene88229.t1;Parent=MS.gene88229 |
| chr4.4 | exon | 49383453 | 49383560 | 49383453 | ID=MS.gene88229.t1.exon1;Parent=MS.gene88229.t1 |
| chr4.4 | CDS | 49383453 | 49383560 | 49383453 | ID=cds.MS.gene88229.t1;Parent=MS.gene88229.t1 |
| chr4.4 | exon | 49384750 | 49384788 | 49384750 | ID=MS.gene88229.t1.exon2;Parent=MS.gene88229.t1 |
| chr4.4 | CDS | 49384750 | 49384788 | 49384750 | ID=cds.MS.gene88229.t1;Parent=MS.gene88229.t1 |
| chr4.4 | exon | 49387452 | 49387667 | 49387452 | ID=MS.gene88229.t1.exon3;Parent=MS.gene88229.t1 |
| chr4.4 | CDS | 49387452 | 49387667 | 49387452 | ID=cds.MS.gene88229.t1;Parent=MS.gene88229.t1 |
| Gene Sequence |
| Protein sequence |
