Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064863.t1 | XP_003603853.1 | 98.2 | 114 | 2 | 0 | 15 | 128 | 56 | 169 | 4.30E-53 | 217.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064863.t1 | G7J5Y6 | 98.2 | 114 | 2 | 0 | 15 | 128 | 56 | 169 | 3.1e-53 | 217.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene064863 | 0.823338 | 1.46E-53 | -1.69E-46 |
| MS.gene049382 | MS.gene064863 | 0.809916 | 1.49E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene064863 | 0.83888 | 2.21E-57 | -1.69E-46 |
| MS.gene04984 | MS.gene064863 | 0.811664 | 6.25E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene064863 | 0.814978 | 1.17E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene064863 | 0.81389 | 2.04E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene064863 | 0.809714 | 1.65E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene064863 | -0.819041 | 1.43E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene064863 | -0.806548 | 7.80E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene064863 | 0.815772 | 7.79E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene064863 | 0.820064 | 8.36E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene064863 | 0.811182 | 7.96E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene064863 | 0.848417 | 6.21E-60 | -1.69E-46 |
| MS.gene050763 | MS.gene064863 | 0.850528 | 1.60E-60 | -1.69E-46 |
| MS.gene051245 | MS.gene064863 | 0.814694 | 1.35E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene064863 | 0.805304 | 1.42E-49 | -1.69E-46 |
| MS.gene052115 | MS.gene064863 | 0.822828 | 1.92E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene064863 | 0.829864 | 4.06E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene064863 | 0.809433 | 1.90E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene064863 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene064863 | 0.819609 | 1.06E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene064863 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene064863 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene054542 | MS.gene064863 | 0.814882 | 1.23E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene064863 | 0.856508 | 3.07E-62 | -1.69E-46 |
| MS.gene055133 | MS.gene064863 | 0.801869 | 7.35E-49 | -1.69E-46 |
| MS.gene055509 | MS.gene064863 | 0.810733 | 9.95E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene064863 | -0.842394 | 2.66E-58 | -1.69E-46 |
| MS.gene056760 | MS.gene064863 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene064863 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene064863 | 0.829404 | 5.25E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene064863 | 0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene064863 | 0.87214 | 4.00E-67 | -1.69E-46 |
| MS.gene058906 | MS.gene064863 | 0.826147 | 3.18E-54 | -1.69E-46 |
| MS.gene059713 | MS.gene064863 | 0.825767 | 3.92E-54 | -1.69E-46 |
| MS.gene060084 | MS.gene064863 | 0.808443 | 3.09E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene064863 | 0.840104 | 1.06E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064863.t1 | MTR_3g115930 | 96.094 | 128 | 2 | 1 | 1 | 128 | 45 | 169 | 4.21e-86 | 248 |
| MS.gene064863.t1 | MTR_5g024680 | 60.484 | 124 | 48 | 1 | 4 | 127 | 43 | 165 | 8.02e-46 | 146 |
| MS.gene064863.t1 | MTR_5g007210 | 47.312 | 93 | 42 | 3 | 18 | 109 | 56 | 142 | 2.75e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064863.t1 | AT1G42960 | 68.908 | 119 | 37 | 0 | 8 | 126 | 48 | 166 | 9.03e-57 | 174 |
| MS.gene064863.t1 | AT5G16660 | 45.161 | 124 | 61 | 4 | 10 | 128 | 47 | 168 | 3.64e-22 | 86.3 |
| MS.gene064863.t1 | AT5G16660 | 45.000 | 100 | 48 | 4 | 34 | 128 | 69 | 166 | 1.35e-15 | 69.3 |
| MS.gene064863.t1 | AT3G02900 | 41.584 | 101 | 49 | 4 | 34 | 126 | 62 | 160 | 3.91e-14 | 65.5 |
| MS.gene064863.t1 | AT3G02900 | 40.196 | 102 | 52 | 3 | 34 | 128 | 68 | 167 | 8.46e-14 | 64.7 |
Find 36 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTGTGAGAGCTGCTTAT+AGG | 0.232778 | 3.3:-94542090 | MS.gene064863:intron |
| TAGATCAACAATGCTTTAAC+TGG | 0.273740 | 3.3:-94540867 | MS.gene064863:CDS |
| TTTGTTGGTGGCTTTATCTT+AGG | 0.278303 | 3.3:-94541255 | MS.gene064863:CDS |
| AGTTCACAGCTACCCCATTT+GGG | 0.329966 | 3.3:+94540300 | None:intergenic |
| GAGTTCACAGCTACCCCATT+TGG | 0.344253 | 3.3:+94540299 | None:intergenic |
| ATTTCTTCTCAGCTTCGGTC+AGG | 0.398728 | 3.3:-94540329 | MS.gene064863:CDS |
| GGATTGGTCGTTGGAGCTCT+TGG | 0.402742 | 3.3:-94541231 | MS.gene064863:CDS |
| ATGAAATTTCTTCTCAGCTT+CGG | 0.403229 | 3.3:-94540334 | MS.gene064863:CDS |
| TGATGAAGAAAAGGCTTTAG+AGG | 0.406845 | 3.3:-94540799 | MS.gene064863:intron |
| CGGTCAGGGGACACCCCAAA+TGG | 0.420851 | 3.3:-94540314 | MS.gene064863:CDS |
| TCTTCATCATATATGAACTT+TGG | 0.433299 | 3.3:+94540813 | None:intergenic |
| CTTCTTCTTCTTCAACCACT+AGG | 0.433661 | 3.3:-94542117 | MS.gene064863:CDS |
| ATCTTAGGAGGATTGGTCGT+TGG | 0.442100 | 3.3:-94541240 | MS.gene064863:CDS |
| TGGCTGTGTGTATGCACCTC+AGG | 0.447904 | 3.3:-94541211 | MS.gene064863:intron |
| AACAGTGCTAGCGTCTTTGT+TGG | 0.448443 | 3.3:-94541270 | MS.gene064863:CDS |
| TGGCTTTATCTTAGGAGGAT+TGG | 0.449138 | 3.3:-94541247 | MS.gene064863:CDS |
| GTTCATATATGATGAAGAAA+AGG | 0.474265 | 3.3:-94540808 | MS.gene064863:CDS |
| GGTCAGGGGACACCCCAAAT+GGG | 0.485986 | 3.3:-94540313 | MS.gene064863:CDS |
| AACAAAGACGCTAGCACTGT+TGG | 0.495401 | 3.3:+94541272 | None:intergenic |
| AGTGCTAGCGTCTTTGTTGG+TGG | 0.498083 | 3.3:-94541267 | MS.gene064863:CDS |
| GTTGGTGGCTTTATCTTAGG+AGG | 0.508208 | 3.3:-94541252 | MS.gene064863:CDS |
| ACAAAGACGCTAGCACTGTT+GGG | 0.510653 | 3.3:+94541273 | None:intergenic |
| GCAGAAAACACGGAAAGTAC+TGG | 0.513465 | 3.3:-94540390 | MS.gene064863:intron |
| TTCTTCTCAGCTTCGGTCAG+GGG | 0.517583 | 3.3:-94540327 | MS.gene064863:CDS |
| TTTCTTCTCAGCTTCGGTCA+GGG | 0.532238 | 3.3:-94540328 | MS.gene064863:CDS |
| TGCCTGATTTGCAGAAAACA+CGG | 0.554843 | 3.3:-94540400 | MS.gene064863:intron |
| ATGCTTTAACTGGAACTGAC+AGG | 0.557799 | 3.3:-94540857 | MS.gene064863:CDS |
| TAAGCAGCTCTCACAATGAA+AGG | 0.570996 | 3.3:+94542094 | None:intergenic |
| TTCTTGAACTACAGTGATGG+TGG | 0.596657 | 3.3:-94541300 | MS.gene064863:intron |
| TGAACTACAGTGATGGTGGA+AGG | 0.616174 | 3.3:-94541296 | MS.gene064863:intron |
| GTTCACAGCTACCCCATTTG+GGG | 0.620736 | 3.3:+94540301 | None:intergenic |
| TAAGATTGAACAGTTGAACT+CGG | 0.621854 | 3.3:-94540363 | MS.gene064863:CDS |
| ATCATAGCAACGGTCTCATG+TGG | 0.632059 | 3.3:+94540259 | None:intergenic |
| GTCAGGGGACACCCCAAATG+GGG | 0.640664 | 3.3:-94540312 | MS.gene064863:CDS |
| TCTCACAATGAAAGGCCTAG+TGG | 0.660462 | 3.3:+94542102 | None:intergenic |
| TTTAACTGGAACTGACAGGA+AGG | 0.670438 | 3.3:-94540853 | MS.gene064863:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATAATATATTAATTT+TGG | + | chr3.3:94540817-94540836 | None:intergenic | 0.0% |
| !! | AATTCTAATCAATATTATCA+TGG | - | chr3.3:94541766-94541785 | MS.gene064863:intron | 15.0% |
| !! | TGTTTATACTATAATTATCA+TGG | - | chr3.3:94540624-94540643 | MS.gene064863:intron | 15.0% |
| !! | TTAAATGTTTATATACATAG+TGG | - | chr3.3:94540833-94540852 | MS.gene064863:CDS | 15.0% |
| !!! | GTCAAATTTACTTTTATTTT+TGG | + | chr3.3:94541026-94541045 | None:intergenic | 15.0% |
| !! | AATTGTTTAATAAGCTATCT+TGG | + | chr3.3:94540478-94540497 | None:intergenic | 20.0% |
| !! | ATTATAATTTCAATCATCGT+TGG | + | chr3.3:94540970-94540989 | None:intergenic | 20.0% |
| !! | TAGAAATCATTATACAGATT+TGG | + | chr3.3:94541801-94541820 | None:intergenic | 20.0% |
| !! | TGCAAAAATTTATATAGAAC+TGG | - | chr3.3:94541870-94541889 | MS.gene064863:intron | 20.0% |
| !!! | TATAAATTTTTGCAACCAAA+TGG | + | chr3.3:94541864-94541883 | None:intergenic | 20.0% |
| !!! | TTTAAAATCTTTAAGATAGC+AGG | - | chr3.3:94541415-94541434 | MS.gene064863:intron | 20.0% |
| ! | ATTGATACATTAGCATTGTT+TGG | + | chr3.3:94540571-94540590 | None:intergenic | 25.0% |
| ! | CTTTATAAGATAAACCTGTA+GGG | + | chr3.3:94541662-94541681 | None:intergenic | 25.0% |
| ! | GTCATTTATATGGCTATATA+AGG | - | chr3.3:94541301-94541320 | MS.gene064863:intron | 25.0% |
| ! | GTTCATATATGATGAAGAAA+AGG | - | chr3.3:94541602-94541621 | MS.gene064863:intron | 25.0% |
| ! | TATATAAGCGCTTATGTATA+AGG | + | chr3.3:94540519-94540538 | None:intergenic | 25.0% |
| ! | TATGGCTATATAAGGAAATA+AGG | - | chr3.3:94541309-94541328 | MS.gene064863:intron | 25.0% |
| ! | TCTAATATTAAGCAAGGAAT+TGG | - | chr3.3:94541894-94541913 | MS.gene064863:intron | 25.0% |
| ! | TCTTCATCATATATGAACTT+TGG | + | chr3.3:94541600-94541619 | None:intergenic | 25.0% |
| ! | TCTTTATAAGATAAACCTGT+AGG | + | chr3.3:94541663-94541682 | None:intergenic | 25.0% |
| ! | TGAGTTCATTTCAAGATATA+TGG | + | chr3.3:94541723-94541742 | None:intergenic | 25.0% |
| !! | CAAATTTTGTGAGCAATTAA+AGG | + | chr3.3:94541987-94542006 | None:intergenic | 25.0% |
| !! | TTTGATATATTTTGCGTTAC+TGG | + | chr3.3:94540698-94540717 | None:intergenic | 25.0% |
| AATAGATAAGCTCAAAGAAG+AGG | + | chr3.3:94540376-94540395 | None:intergenic | 30.0% | |
| ATAGATAAGCTCAAAGAAGA+GGG | + | chr3.3:94540375-94540394 | None:intergenic | 30.0% | |
| ATATTCTTGAACTACAGTGA+TGG | - | chr3.3:94541107-94541126 | MS.gene064863:intron | 30.0% | |
| ATGAAATTTCTTCTCAGCTT+CGG | - | chr3.3:94542076-94542095 | MS.gene064863:intron | 30.0% | |
| CTCCTGTTTATTATTTGTGA+TGG | + | chr3.3:94540914-94540933 | None:intergenic | 30.0% | |
| TAAGATTGAACAGTTGAACT+CGG | - | chr3.3:94542047-94542066 | MS.gene064863:intron | 30.0% | |
| TAGATCAACAATGCTTTAAC+TGG | - | chr3.3:94541543-94541562 | MS.gene064863:intron | 30.0% | |
| TATGAAAATAGGGTGAAAAC+AGG | + | chr3.3:94540449-94540468 | None:intergenic | 30.0% | |
| TATTTGTGATGGCAATATGA+AGG | + | chr3.3:94540903-94540922 | None:intergenic | 30.0% | |
| TGAAATGAACTCACTTGAAT+GGG | - | chr3.3:94541730-94541749 | MS.gene064863:intron | 30.0% | |
| TGCCATCACAAATAATAAAC+AGG | - | chr3.3:94540909-94540928 | MS.gene064863:intron | 30.0% | |
| TGTAGTTCAAGAATATGTAG+TGG | + | chr3.3:94541103-94541122 | None:intergenic | 30.0% | |
| TTGAAATGAACTCACTTGAA+TGG | - | chr3.3:94541729-94541748 | MS.gene064863:intron | 30.0% | |
| TTGGAGAGGTTATGAAAATA+GGG | + | chr3.3:94540459-94540478 | None:intergenic | 30.0% | |
| TTGGTAAGAATGTAATGACA+TGG | + | chr3.3:94540798-94540817 | None:intergenic | 30.0% | |
| TTGTTAACTGTACAAGTAAG+AGG | + | chr3.3:94541357-94541376 | None:intergenic | 30.0% | |
| TTTAATAAGCTATCTTGGAG+AGG | + | chr3.3:94540473-94540492 | None:intergenic | 30.0% | |
| ! | AATTTTTGCAACCAAATGGA+TGG | + | chr3.3:94541860-94541879 | None:intergenic | 30.0% |
| ! | TGCTTTCTTCTTTTACTTAC+AGG | - | chr3.3:94541697-94541716 | MS.gene064863:intron | 30.0% |
| ! | TGTTACTGTGACATACATTT+TGG | - | chr3.3:94541229-94541248 | MS.gene064863:CDS | 30.0% |
| !! | ACTGGTTCTAATATTAAGCA+AGG | - | chr3.3:94541888-94541907 | MS.gene064863:intron | 30.0% |
| !!! | CATACATTTTGGTTTTCAAC+AGG | - | chr3.3:94541240-94541259 | MS.gene064863:CDS | 30.0% |
| ACAGTAACAAATACTACCTG+AGG | + | chr3.3:94541218-94541237 | None:intergenic | 35.0% | |
| CATATAAATGACGACATCAC+AGG | + | chr3.3:94541293-94541312 | None:intergenic | 35.0% | |
| CTATGCTCAAATCAATTTCC+TGG | - | chr3.3:94541818-94541837 | MS.gene064863:intron | 35.0% | |
| CTGTGATGTCGTCATTTATA+TGG | - | chr3.3:94541291-94541310 | MS.gene064863:intron | 35.0% | |
| CTTGGAGAGGTTATGAAAAT+AGG | + | chr3.3:94540460-94540479 | None:intergenic | 35.0% | |
| GAAATGAACTCACTTGAATG+GGG | - | chr3.3:94541731-94541750 | MS.gene064863:intron | 35.0% | |
| GCAGCATAATTAAAAACGCT+TGG | - | chr3.3:94541382-94541401 | MS.gene064863:intron | 35.0% | |
| GTAAAAGAAGAAAGCAAGCA+TGG | + | chr3.3:94541693-94541712 | None:intergenic | 35.0% | |
| ! | TGATGAAGAAAAGGCTTTAG+AGG | - | chr3.3:94541611-94541630 | MS.gene064863:intron | 35.0% |
| !! | TTTGTTGGTGGCTTTATCTT+AGG | - | chr3.3:94541155-94541174 | MS.gene064863:intron | 35.0% |
| !!! | TTTGGTTTTCAACAGGATCA+GGG | - | chr3.3:94541247-94541266 | MS.gene064863:CDS | 35.0% |
| !!! | TTTTGGTTTTCAACAGGATC+AGG | - | chr3.3:94541246-94541265 | MS.gene064863:CDS | 35.0% |
| AGAAGAGCGAGAGTAACAAA+AGG | + | chr3.3:94541931-94541950 | None:intergenic | 40.0% | |
| ATAAGCTCAAAGAAGAGGGA+GGG | + | chr3.3:94540371-94540390 | None:intergenic | 40.0% | |
| ATGCTTTAACTGGAACTGAC+AGG | - | chr3.3:94541553-94541572 | MS.gene064863:intron | 40.0% | |
| ATGTTCTGCAACTGCAAATC+AGG | - | chr3.3:94541468-94541487 | MS.gene064863:intron | 40.0% | |
| CTTCTTCTTCTTCAACCACT+AGG | - | chr3.3:94540293-94540312 | MS.gene064863:CDS | 40.0% | |
| GAAGAGCGAGAGTAACAAAA+GGG | + | chr3.3:94541930-94541949 | None:intergenic | 40.0% | |
| TAAGCAGCTCTCACAATGAA+AGG | + | chr3.3:94540319-94540338 | None:intergenic | 40.0% | |
| TCATTGTGAGAGCTGCTTAT+AGG | - | chr3.3:94540320-94540339 | MS.gene064863:CDS | 40.0% | |
| TGCGTTACTGGCATGTATAA+AGG | + | chr3.3:94540686-94540705 | None:intergenic | 40.0% | |
| TGCTCAAATCAATTTCCTGG+AGG | - | chr3.3:94541821-94541840 | MS.gene064863:intron | 40.0% | |
| TTAAGCAAGGAATTGGTCCT+AGG | - | chr3.3:94541901-94541920 | MS.gene064863:intron | 40.0% | |
| TTCAGTTGTCACCATCCATT+TGG | - | chr3.3:94541846-94541865 | MS.gene064863:intron | 40.0% | |
| TTCTTGAACTACAGTGATGG+TGG | - | chr3.3:94541110-94541129 | MS.gene064863:intron | 40.0% | |
| TTGCTCTATGTACTGCAACT+TGG | - | chr3.3:94540659-94540678 | MS.gene064863:intron | 40.0% | |
| TTTAACTGGAACTGACAGGA+AGG | - | chr3.3:94541557-94541576 | MS.gene064863:intron | 40.0% | |
| ! | TGCCTGATTTGCAGAAAACA+CGG | - | chr3.3:94542010-94542029 | MS.gene064863:intron | 40.0% |
| ! | TGCTATTTGTTTCACCCTAC+AGG | - | chr3.3:94541645-94541664 | MS.gene064863:intron | 40.0% |
| ! | TTCCGTGTTTTCTGCAAATC+AGG | + | chr3.3:94542015-94542034 | None:intergenic | 40.0% |
| !! | AACTTGTTGGTTTGAAGTGC+GGG | - | chr3.3:94541957-94541976 | MS.gene064863:intron | 40.0% |
| !! | CAACTTGTTGGTTTGAAGTG+CGG | - | chr3.3:94541956-94541975 | MS.gene064863:intron | 40.0% |
| !! | TGGCTTTATCTTAGGAGGAT+TGG | - | chr3.3:94541163-94541182 | MS.gene064863:intron | 40.0% |
| AACAAAGACGCTAGCACTGT+TGG | + | chr3.3:94541141-94541160 | None:intergenic | 45.0% | |
| AACAGTGCTAGCGTCTTTGT+TGG | - | chr3.3:94541140-94541159 | MS.gene064863:intron | 45.0% | |
| ACAAAGACGCTAGCACTGTT+GGG | + | chr3.3:94541140-94541159 | None:intergenic | 45.0% | |
| AGAAGAAAGCAAGCATGGCA+AGG | + | chr3.3:94541688-94541707 | None:intergenic | 45.0% | |
| AGTTCACAGCTACCCCATTT+GGG | + | chr3.3:94542113-94542132 | None:intergenic | 45.0% | |
| ATTTCTTCTCAGCTTCGGTC+AGG | - | chr3.3:94542081-94542100 | MS.gene064863:intron | 45.0% | |
| CTCTTCTTGCTGCAACTTGT+TGG | - | chr3.3:94541944-94541963 | MS.gene064863:intron | 45.0% | |
| GATAAGCTCAAAGAAGAGGG+AGG | + | chr3.3:94540372-94540391 | None:intergenic | 45.0% | |
| GTAACGAACAGTCTCACAAG+TGG | + | chr3.3:94540406-94540425 | None:intergenic | 45.0% | |
| TAAGCTCAAAGAAGAGGGAG+GGG | + | chr3.3:94540370-94540389 | None:intergenic | 45.0% | |
| TCTCACAATGAAAGGCCTAG+TGG | + | chr3.3:94540311-94540330 | None:intergenic | 45.0% | |
| TTTCTTCTCAGCTTCGGTCA+GGG | - | chr3.3:94542082-94542101 | MS.gene064863:intron | 45.0% | |
| ! | GCAGAAAACACGGAAAGTAC+TGG | - | chr3.3:94542020-94542039 | MS.gene064863:intron | 45.0% |
| !! | ATCTTAGGAGGATTGGTCGT+TGG | - | chr3.3:94541170-94541189 | MS.gene064863:intron | 45.0% |
| !! | GTTGGTGGCTTTATCTTAGG+AGG | - | chr3.3:94541158-94541177 | MS.gene064863:intron | 45.0% |
| !! | TGAACTACAGTGATGGTGGA+AGG | - | chr3.3:94541114-94541133 | MS.gene064863:intron | 45.0% |
| AAGCTCAAAGAAGAGGGAGG+GGG | + | chr3.3:94540369-94540388 | None:intergenic | 50.0% | |
| AGCAAGGAATTGGTCCTAGG+AGG | - | chr3.3:94541904-94541923 | MS.gene064863:intron | 50.0% | |
| AGTGCTAGCGTCTTTGTTGG+TGG | - | chr3.3:94541143-94541162 | MS.gene064863:intron | 50.0% | |
| GAGTAACAAAAGGGCCTCCT+AGG | + | chr3.3:94541921-94541940 | None:intergenic | 50.0% | |
| GAGTTCACAGCTACCCCATT+TGG | + | chr3.3:94542114-94542133 | None:intergenic | 50.0% | |
| GTTCACAGCTACCCCATTTG+GGG | + | chr3.3:94542112-94542131 | None:intergenic | 50.0% | |
| TTCTTCTCAGCTTCGGTCAG+GGG | - | chr3.3:94542083-94542102 | MS.gene064863:intron | 50.0% | |
| AGCTCAAAGAAGAGGGAGGG+GGG | + | chr3.3:94540368-94540387 | None:intergenic | 55.0% | |
| GGTGACAACTGAATGCCTCC+AGG | + | chr3.3:94541839-94541858 | None:intergenic | 55.0% | |
| TGGCTGTGTGTATGCACCTC+AGG | - | chr3.3:94541199-94541218 | MS.gene064863:intron | 55.0% | |
| !! | GGATTGGTCGTTGGAGCTCT+TGG | - | chr3.3:94541179-94541198 | MS.gene064863:intron | 55.0% |
| CTCAAAGAAGAGGGAGGGGG+GGG | + | chr3.3:94540366-94540385 | None:intergenic | 60.0% | |
| GCTCAAAGAAGAGGGAGGGG+GGG | + | chr3.3:94540367-94540386 | None:intergenic | 60.0% | |
| GGTCAGGGGACACCCCAAAT+GGG | - | chr3.3:94542097-94542116 | MS.gene064863:CDS | 60.0% | |
| GTCAGGGGACACCCCAAATG+GGG | - | chr3.3:94542098-94542117 | MS.gene064863:CDS | 60.0% | |
| TCAAAGAAGAGGGAGGGGGG+GGG | + | chr3.3:94540365-94540384 | None:intergenic | 60.0% | |
| AAAGAAGAGGGAGGGGGGGG+GGG | + | chr3.3:94540363-94540382 | None:intergenic | 65.0% | |
| CAAAGAAGAGGGAGGGGGGG+GGG | + | chr3.3:94540364-94540383 | None:intergenic | 65.0% | |
| CGGTCAGGGGACACCCCAAA+TGG | - | chr3.3:94542096-94542115 | MS.gene064863:CDS | 65.0% | |
| AAGAAGAGGGAGGGGGGGGG+GGG | + | chr3.3:94540362-94540381 | None:intergenic | 70.0% | |
| AGAAGAGGGAGGGGGGGGGG+GGG | + | chr3.3:94540361-94540380 | None:intergenic | 75.0% | |
| ! | GAAGAGGGAGGGGGGGGGGG+GGG | + | chr3.3:94540360-94540379 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94540274 | 94542158 | 94540274 | ID=MS.gene064863 |
| chr3.3 | mRNA | 94540274 | 94542158 | 94540274 | ID=MS.gene064863.t1;Parent=MS.gene064863 |
| chr3.3 | exon | 94542091 | 94542158 | 94542091 | ID=MS.gene064863.t1.exon1;Parent=MS.gene064863.t1 |
| chr3.3 | CDS | 94542091 | 94542158 | 94542091 | ID=cds.MS.gene064863.t1;Parent=MS.gene064863.t1 |
| chr3.3 | exon | 94541212 | 94541308 | 94541212 | ID=MS.gene064863.t1.exon2;Parent=MS.gene064863.t1 |
| chr3.3 | CDS | 94541212 | 94541308 | 94541212 | ID=cds.MS.gene064863.t1;Parent=MS.gene064863.t1 |
| chr3.3 | exon | 94540800 | 94540886 | 94540800 | ID=MS.gene064863.t1.exon3;Parent=MS.gene064863.t1 |
| chr3.3 | CDS | 94540800 | 94540886 | 94540800 | ID=cds.MS.gene064863.t1;Parent=MS.gene064863.t1 |
| chr3.3 | exon | 94540274 | 94540408 | 94540274 | ID=MS.gene064863.t1.exon4;Parent=MS.gene064863.t1 |
| chr3.3 | CDS | 94540274 | 94540408 | 94540274 | ID=cds.MS.gene064863.t1;Parent=MS.gene064863.t1 |
| Gene Sequence |
| Protein sequence |
