Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08514.t1 | XP_013444538.1 | 99.5 | 185 | 1 | 0 | 1 | 185 | 181 | 365 | 2.30E-92 | 348.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08514.t1 | O81037 | 56.6 | 182 | 70 | 4 | 1 | 178 | 193 | 369 | 9.7e-47 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08514.t1 | A0A072TNY8 | 99.5 | 185 | 1 | 0 | 1 | 185 | 181 | 365 | 1.7e-92 | 348.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08514.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene08514 | 0.810457 | 1.14E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene08514 | 0.802852 | 4.61E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene08514 | 0.862545 | 4.70E-64 | -1.69E-46 |
| MS.gene049915 | MS.gene08514 | 0.820542 | 6.49E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene08514 | 0.802695 | 4.96E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene08514 | 0.80612 | 9.60E-50 | -1.69E-46 |
| MS.gene051626 | MS.gene08514 | 0.832114 | 1.14E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene08514 | 0.82056 | 6.43E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene08514 | 0.829774 | 4.27E-55 | -1.69E-46 |
| MS.gene051789 | MS.gene08514 | 0.831855 | 1.32E-55 | -1.69E-46 |
| MS.gene052178 | MS.gene08514 | 0.805989 | 1.02E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene08514 | 0.811207 | 7.86E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene08514 | 0.805672 | 1.19E-49 | -1.69E-46 |
| MS.gene052967 | MS.gene08514 | 0.817183 | 3.76E-52 | -1.69E-46 |
| MS.gene053074 | MS.gene08514 | 0.830397 | 3.00E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene08514 | 0.840006 | 1.13E-57 | -1.69E-46 |
| MS.gene054184 | MS.gene08514 | 0.831041 | 2.09E-55 | -1.69E-46 |
| MS.gene054185 | MS.gene08514 | 0.839549 | 1.48E-57 | -1.69E-46 |
| MS.gene054542 | MS.gene08514 | 0.830445 | 2.93E-55 | -1.69E-46 |
| MS.gene054667 | MS.gene08514 | 0.822212 | 2.67E-53 | -1.69E-46 |
| MS.gene055133 | MS.gene08514 | 0.860769 | 1.64E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene08514 | 0.805623 | 1.22E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene08514 | 0.817384 | 3.39E-52 | -1.69E-46 |
| MS.gene055509 | MS.gene08514 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene056069 | MS.gene08514 | -0.822238 | 2.64E-53 | -1.69E-46 |
| MS.gene057260 | MS.gene08514 | 0.812796 | 3.54E-51 | -1.69E-46 |
| MS.gene057393 | MS.gene08514 | 0.811663 | 6.25E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene08514 | 0.804262 | 2.35E-49 | -1.69E-46 |
| MS.gene057754 | MS.gene08514 | 0.856255 | 3.64E-62 | -1.69E-46 |
| MS.gene057794 | MS.gene08514 | 0.809296 | 2.03E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene08514 | 0.813308 | 2.73E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene08514 | 0.828367 | 9.35E-55 | -1.69E-46 |
| MS.gene058236 | MS.gene08514 | 0.811417 | 7.07E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene08514 | 0.801662 | 8.10E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene08514 | 0.821348 | 4.24E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene08514 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene08514 | 0.811679 | 6.21E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene08514 | 0.819343 | 1.22E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene08514 | 0.803455 | 3.46E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene08514 | 0.817218 | 3.70E-52 | -1.69E-46 |
| MS.gene060320 | MS.gene08514 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene08514 | 0.813977 | 1.95E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene08514 | 0.91277 | 1.33E-83 | -1.69E-46 |
| MS.gene061049 | MS.gene08514 | 0.817093 | 3.94E-52 | -1.69E-46 |
| MS.gene061113 | MS.gene08514 | 0.823554 | 1.30E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08514.t1 | MTR_8g024210 | 99.459 | 185 | 1 | 0 | 1 | 185 | 181 | 365 | 2.03e-132 | 375 |
| MS.gene08514.t1 | MTR_0194s0050 | 54.000 | 200 | 73 | 5 | 1 | 182 | 184 | 382 | 2.65e-60 | 192 |
| MS.gene08514.t1 | MTR_7g113830 | 51.282 | 195 | 85 | 2 | 1 | 185 | 116 | 310 | 3.10e-60 | 190 |
| MS.gene08514.t1 | MTR_1g082480 | 50.769 | 195 | 82 | 3 | 1 | 181 | 136 | 330 | 3.89e-60 | 191 |
| MS.gene08514.t1 | MTR_3g099620 | 49.239 | 197 | 84 | 3 | 1 | 181 | 116 | 312 | 4.28e-60 | 190 |
| MS.gene08514.t1 | MTR_8g066770 | 49.741 | 193 | 82 | 3 | 1 | 181 | 114 | 303 | 2.46e-58 | 185 |
| MS.gene08514.t1 | MTR_5g064950 | 46.392 | 194 | 82 | 4 | 1 | 177 | 100 | 288 | 1.81e-53 | 172 |
| MS.gene08514.t1 | MTR_1g082480 | 50.000 | 172 | 72 | 3 | 1 | 158 | 136 | 307 | 5.91e-49 | 162 |
| MS.gene08514.t1 | MTR_5g064950 | 46.857 | 175 | 71 | 4 | 1 | 158 | 100 | 269 | 4.40e-47 | 156 |
| MS.gene08514.t1 | MTR_2g022280 | 44.920 | 187 | 94 | 3 | 1 | 179 | 1 | 186 | 3.09e-44 | 145 |
| MS.gene08514.t1 | MTR_3g090850 | 39.565 | 230 | 85 | 6 | 1 | 178 | 101 | 328 | 5.03e-40 | 138 |
| MS.gene08514.t1 | MTR_1g028470 | 35.749 | 207 | 103 | 3 | 1 | 178 | 87 | 292 | 1.16e-35 | 126 |
| MS.gene08514.t1 | MTR_1g072320 | 27.957 | 186 | 124 | 4 | 3 | 180 | 471 | 654 | 1.19e-14 | 71.6 |
| MS.gene08514.t1 | MTR_8g027495 | 27.160 | 162 | 95 | 5 | 1 | 157 | 457 | 600 | 2.14e-13 | 67.8 |
| MS.gene08514.t1 | MTR_5g014520 | 29.530 | 149 | 100 | 2 | 3 | 151 | 158 | 301 | 5.48e-13 | 66.2 |
| MS.gene08514.t1 | MTR_4g094762 | 27.907 | 172 | 101 | 4 | 3 | 160 | 293 | 455 | 8.83e-12 | 63.2 |
| MS.gene08514.t1 | MTR_7g083900 | 27.273 | 187 | 93 | 7 | 3 | 165 | 287 | 454 | 1.33e-11 | 62.8 |
| MS.gene08514.t1 | MTR_1g112680 | 27.957 | 186 | 101 | 6 | 3 | 160 | 318 | 498 | 5.11e-11 | 60.8 |
| MS.gene08514.t1 | MTR_2g104550 | 26.816 | 179 | 125 | 4 | 1 | 178 | 137 | 310 | 6.84e-11 | 60.1 |
| MS.gene08514.t1 | MTR_7g083900 | 27.273 | 187 | 92 | 7 | 3 | 165 | 287 | 453 | 8.71e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08514.t1 | AT2G46810 | 56.593 | 182 | 70 | 4 | 1 | 178 | 121 | 297 | 3.14e-64 | 200 |
| MS.gene08514.t1 | AT2G46810 | 56.593 | 182 | 70 | 4 | 1 | 178 | 181 | 357 | 2.01e-63 | 199 |
| MS.gene08514.t1 | AT2G46810 | 56.593 | 182 | 70 | 4 | 1 | 178 | 193 | 369 | 2.95e-63 | 199 |
| MS.gene08514.t1 | AT4G01460 | 52.062 | 194 | 77 | 3 | 1 | 182 | 115 | 304 | 9.54e-62 | 194 |
| MS.gene08514.t1 | AT4G01460 | 52.062 | 194 | 77 | 3 | 1 | 182 | 115 | 304 | 9.54e-62 | 194 |
| MS.gene08514.t1 | AT2G46810 | 49.048 | 210 | 70 | 5 | 1 | 178 | 121 | 325 | 3.87e-58 | 185 |
| MS.gene08514.t1 | AT3G24140 | 50.990 | 202 | 78 | 3 | 1 | 182 | 197 | 397 | 6.50e-57 | 184 |
| MS.gene08514.t1 | AT3G24140 | 51.244 | 201 | 77 | 3 | 1 | 181 | 197 | 396 | 7.56e-57 | 184 |
| MS.gene08514.t1 | AT1G22490 | 49.479 | 192 | 80 | 3 | 1 | 181 | 115 | 300 | 1.91e-55 | 177 |
| MS.gene08514.t1 | AT1G72210 | 48.947 | 190 | 87 | 3 | 1 | 181 | 125 | 313 | 2.93e-54 | 175 |
| MS.gene08514.t1 | AT3G61950 | 52.486 | 181 | 78 | 3 | 1 | 178 | 127 | 302 | 4.14e-54 | 174 |
| MS.gene08514.t1 | AT3G61950 | 52.486 | 181 | 78 | 3 | 1 | 178 | 178 | 353 | 2.41e-53 | 174 |
| MS.gene08514.t1 | AT1G22490 | 50.296 | 169 | 67 | 3 | 1 | 158 | 115 | 277 | 4.63e-48 | 159 |
| MS.gene08514.t1 | AT1G72210 | 48.503 | 167 | 76 | 3 | 1 | 158 | 125 | 290 | 7.66e-47 | 155 |
| MS.gene08514.t1 | AT3G61950 | 52.795 | 161 | 68 | 3 | 1 | 158 | 127 | 282 | 1.49e-45 | 152 |
| MS.gene08514.t1 | AT3G61950 | 52.795 | 161 | 68 | 3 | 1 | 158 | 178 | 333 | 7.98e-45 | 151 |
| MS.gene08514.t1 | AT5G46690 | 44.811 | 212 | 86 | 5 | 1 | 181 | 88 | 299 | 1.50e-43 | 147 |
| MS.gene08514.t1 | AT3G06120 | 43.017 | 179 | 87 | 2 | 1 | 164 | 1 | 179 | 1.76e-41 | 139 |
| MS.gene08514.t1 | AT5G65320 | 40.107 | 187 | 102 | 4 | 1 | 177 | 102 | 288 | 3.21e-36 | 128 |
| MS.gene08514.t1 | AT5G46690 | 43.915 | 189 | 75 | 5 | 1 | 158 | 88 | 276 | 2.96e-34 | 122 |
| MS.gene08514.t1 | AT5G65320 | 39.535 | 172 | 85 | 4 | 1 | 158 | 102 | 268 | 9.99e-30 | 110 |
| MS.gene08514.t1 | AT5G53210 | 66.667 | 63 | 21 | 0 | 1 | 63 | 102 | 164 | 6.87e-25 | 99.4 |
| MS.gene08514.t1 | AT5G53210 | 66.667 | 63 | 21 | 0 | 1 | 63 | 102 | 164 | 7.72e-25 | 99.4 |
| MS.gene08514.t1 | AT5G53210 | 40.000 | 90 | 53 | 1 | 89 | 178 | 275 | 363 | 1.71e-12 | 65.1 |
| MS.gene08514.t1 | AT3G26744 | 30.857 | 175 | 99 | 6 | 3 | 165 | 308 | 472 | 2.77e-13 | 67.4 |
| MS.gene08514.t1 | AT3G26744 | 30.857 | 175 | 99 | 6 | 3 | 165 | 308 | 472 | 2.77e-13 | 67.4 |
| MS.gene08514.t1 | AT3G26744 | 30.857 | 175 | 99 | 6 | 3 | 165 | 308 | 472 | 2.77e-13 | 67.4 |
| MS.gene08514.t1 | AT1G12860 | 30.909 | 165 | 97 | 5 | 3 | 158 | 268 | 424 | 2.86e-13 | 67.4 |
| MS.gene08514.t1 | AT3G26744 | 30.357 | 168 | 98 | 5 | 3 | 158 | 308 | 468 | 3.58e-13 | 67.4 |
| MS.gene08514.t1 | AT1G12860 | 31.677 | 161 | 93 | 5 | 3 | 154 | 268 | 420 | 3.67e-13 | 67.0 |
| MS.gene08514.t1 | AT2G16910 | 29.082 | 196 | 103 | 8 | 3 | 175 | 315 | 497 | 3.46e-12 | 64.3 |
| MS.gene08514.t1 | AT4G29930 | 29.630 | 162 | 95 | 5 | 3 | 161 | 55 | 200 | 4.37e-12 | 62.8 |
| MS.gene08514.t1 | AT5G57150 | 29.268 | 164 | 104 | 5 | 3 | 158 | 56 | 215 | 7.16e-12 | 62.0 |
| MS.gene08514.t1 | AT5G57150 | 28.743 | 167 | 107 | 5 | 3 | 161 | 55 | 217 | 1.00e-11 | 62.0 |
Find 26 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTGCTTTGGAAAATCTT+AGG | 0.306717 | 8.3:+68204579 | MS.gene08514:CDS |
| GATAAAGGTTATTGTTGCTT+TGG | 0.325174 | 8.3:+68204568 | MS.gene08514:CDS |
| GGTGACCAAGCATCAATAAT+TGG | 0.351169 | 8.3:+68204293 | MS.gene08514:CDS |
| ACTCAAAAGATGTGATGTTT+AGG | 0.363568 | 8.3:-68204616 | None:intergenic |
| ATGACCACCTTAGTGTTCTT+AGG | 0.380570 | 8.3:+68203848 | MS.gene08514:CDS |
| CACTAAGGTGGTCATTCATT+TGG | 0.381725 | 8.3:-68203840 | None:intergenic |
| CTCCTCCAATTATTGATGCT+TGG | 0.405749 | 8.3:-68204298 | None:intergenic |
| AAAGGCTGGTCAATTGATAA+AGG | 0.417902 | 8.3:+68204553 | MS.gene08514:CDS |
| TCATCATCACCGCCTAGTTA+TGG | 0.434743 | 8.3:+68204413 | MS.gene08514:CDS |
| ATATTCAGCTACATCAATAA+TGG | 0.454301 | 8.3:+68205646 | MS.gene08514:CDS |
| GAATAATACCTTGAGATTGA+AGG | 0.480462 | 8.3:-68204654 | None:intergenic |
| ATATTGCTGTTGAACGCAAT+AGG | 0.480469 | 8.3:+68203812 | MS.gene08514:CDS |
| TGCCATCTTCATATGTTCAA+AGG | 0.494987 | 8.3:+68203878 | MS.gene08514:CDS |
| GATAATTTCATTCCATAACT+AGG | 0.502981 | 8.3:-68204425 | None:intergenic |
| GCCATCTTCATATGTTCAAA+GGG | 0.503887 | 8.3:+68203879 | MS.gene08514:CDS |
| TTGTGAAGAAAATGAGGTAA+AGG | 0.510975 | 8.3:+68204451 | MS.gene08514:CDS |
| ACCCTTTGAACATATGAAGA+TGG | 0.543479 | 8.3:-68203880 | None:intergenic |
| ATCACCTTGTGAAGAAAATG+AGG | 0.546176 | 8.3:+68204445 | MS.gene08514:CDS |
| ATTGAAGAAGACTGTAAGCT+AGG | 0.552236 | 8.3:+68205589 | MS.gene08514:CDS |
| TGTGATGTTTAGGTGAAGAA+TGG | 0.555251 | 8.3:-68204606 | None:intergenic |
| ACTCTACTCCTTCAATCTCA+AGG | 0.617899 | 8.3:+68204646 | MS.gene08514:CDS |
| TGAGAGACCTAAGAACACTA+AGG | 0.629812 | 8.3:-68203855 | None:intergenic |
| GACCAAGCATCAATAATTGG+AGG | 0.640978 | 8.3:+68204296 | MS.gene08514:CDS |
| AGGCGGTGATGATGATGATG+AGG | 0.686258 | 8.3:-68204405 | None:intergenic |
| GAGACCTAAGAACACTAAGG+TGG | 0.704555 | 8.3:-68203852 | None:intergenic |
| AATTTCATTCCATAACTAGG+CGG | 0.718157 | 8.3:-68204422 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAATGATAAACAATGT+TGG | - | chr8.3:68204818-68204837 | None:intergenic | 15.0% |
| !!! | ATAAAAAAGAATGAAGATTT+TGG | + | chr8.3:68204380-68204399 | MS.gene08514:CDS | 15.0% |
| !!! | ATTTTTTTCATTTATGTGTA+TGG | - | chr8.3:68205148-68205167 | None:intergenic | 15.0% |
| !!! | TTATGTTTTAAAAATCACTT+AGG | + | chr8.3:68204229-68204248 | MS.gene08514:intron | 15.0% |
| !! | TATACAAAACCAAAAAAGAT+TGG | - | chr8.3:68204000-68204019 | None:intergenic | 20.0% |
| !! | TGTTTAATGTTTATGTGATA+GGG | + | chr8.3:68204272-68204291 | MS.gene08514:intron | 20.0% |
| !! | TTGTTTAATGTTTATGTGAT+AGG | + | chr8.3:68204271-68204290 | MS.gene08514:intron | 20.0% |
| !!! | GTTAAAAATCCAATCTTTTT+TGG | + | chr8.3:68203988-68204007 | MS.gene08514:intron | 20.0% |
| !!! | TTTTTTGGTTTTGTATACAA+GGG | + | chr8.3:68204003-68204022 | MS.gene08514:intron | 20.0% |
| ! | AAATAACGAGCTGTATATAT+GGG | + | chr8.3:68205558-68205577 | MS.gene08514:intron | 25.0% |
| ! | AAGATTAGAGAAATAAGAAG+TGG | - | chr8.3:68205029-68205048 | None:intergenic | 25.0% |
| ! | ACATGAAAATCTCAAAAGAA+AGG | - | chr8.3:68203970-68203989 | None:intergenic | 25.0% |
| ! | ATAGAACACACTATTTGAAA+GGG | + | chr8.3:68205062-68205081 | MS.gene08514:intron | 25.0% |
| ! | ATATTCAGCTACATCAATAA+TGG | + | chr8.3:68205646-68205665 | MS.gene08514:CDS | 25.0% |
| ! | GAAAATTGAGTGCAAAAAAA+AGG | + | chr8.3:68204535-68204554 | MS.gene08514:CDS | 25.0% |
| ! | GATAATTTCATTCCATAACT+AGG | - | chr8.3:68204428-68204447 | None:intergenic | 25.0% |
| ! | TAAATAACGAGCTGTATATA+TGG | + | chr8.3:68205535-68205554 | MS.gene08514:intron | 25.0% |
| !!! | AAGAAAGGATTTTGAAGAAA+AGG | - | chr8.3:68203955-68203974 | None:intergenic | 25.0% |
| !!! | AATTGATTTTGTGAAAGAGT+TGG | + | chr8.3:68204322-68204341 | MS.gene08514:CDS | 25.0% |
| !!! | AGAAAGGATTTTGAAGAAAA+GGG | - | chr8.3:68203954-68203973 | None:intergenic | 25.0% |
| !!! | CTTTTTTGGTTTTGTATACA+AGG | + | chr8.3:68204002-68204021 | MS.gene08514:intron | 25.0% |
| AATCTCTTGAAGCACAAAAA+AGG | + | chr8.3:68204357-68204376 | MS.gene08514:CDS | 30.0% | |
| AATTTCATTCCATAACTAGG+CGG | - | chr8.3:68204425-68204444 | None:intergenic | 30.0% | |
| ACTCAAAAGATGTGATGTTT+AGG | - | chr8.3:68204619-68204638 | None:intergenic | 30.0% | |
| ACTCTAATGTTGAGTTTATG+AGG | + | chr8.3:68205293-68205312 | MS.gene08514:intron | 30.0% | |
| CATAGAACACACTATTTGAA+AGG | + | chr8.3:68205061-68205080 | MS.gene08514:intron | 30.0% | |
| GAATAATACCTTGAGATTGA+AGG | - | chr8.3:68204657-68204676 | None:intergenic | 30.0% | |
| TAGAACACACTATTTGAAAG+GGG | + | chr8.3:68205063-68205082 | MS.gene08514:intron | 30.0% | |
| TTGTGAAGAAAATGAGGTAA+AGG | + | chr8.3:68204451-68204470 | MS.gene08514:CDS | 30.0% | |
| ! | GATAAAGGTTATTGTTGCTT+TGG | + | chr8.3:68204568-68204587 | MS.gene08514:CDS | 30.0% |
| ! | TTTACCTCATTTTCTTCACA+AGG | - | chr8.3:68204452-68204471 | None:intergenic | 30.0% |
| !! | TTCAGCTAGTTTCTAGATTT+TGG | + | chr8.3:68205363-68205382 | MS.gene08514:intron | 30.0% |
| !! | TTGTTGCTTTGGAAAATCTT+AGG | + | chr8.3:68204579-68204598 | MS.gene08514:CDS | 30.0% |
| !!! | ACTCAATTTTCAAGTTCACA+TGG | - | chr8.3:68204526-68204545 | None:intergenic | 30.0% |
| !!! | CTCAATTTTCAAGTTCACAT+GGG | - | chr8.3:68204525-68204544 | None:intergenic | 30.0% |
| ACCCTTTGAACATATGAAGA+TGG | - | chr8.3:68203883-68203902 | None:intergenic | 35.0% | |
| AGCTAATGCTATGAGTATGA+GGG | + | chr8.3:68204939-68204958 | MS.gene08514:intron | 35.0% | |
| AGCTCATAGATTAACTAAGG+TGG | + | chr8.3:68205333-68205352 | MS.gene08514:intron | 35.0% | |
| ATCACCTTGTGAAGAAAATG+AGG | + | chr8.3:68204445-68204464 | MS.gene08514:CDS | 35.0% | |
| ATTGAAGAAGACTGTAAGCT+AGG | + | chr8.3:68205589-68205608 | MS.gene08514:CDS | 35.0% | |
| ATTGAGTGCAAAAAAAAGGC+TGG | + | chr8.3:68204539-68204558 | MS.gene08514:CDS | 35.0% | |
| GATAAACAATGTTGGAACCA+AGG | - | chr8.3:68204810-68204829 | None:intergenic | 35.0% | |
| GCCATCTTCATATGTTCAAA+GGG | + | chr8.3:68203879-68203898 | MS.gene08514:CDS | 35.0% | |
| TAAATGTGGTCAACTCACTA+TGG | + | chr8.3:68204729-68204748 | MS.gene08514:intron | 35.0% | |
| TGCCATCTTCATATGTTCAA+AGG | + | chr8.3:68203878-68203897 | MS.gene08514:CDS | 35.0% | |
| TGTGATGTTTAGGTGAAGAA+TGG | - | chr8.3:68204609-68204628 | None:intergenic | 35.0% | |
| ! | AAAGGCTGGTCAATTGATAA+AGG | + | chr8.3:68204553-68204572 | MS.gene08514:CDS | 35.0% |
| ! | ATATTGCTGTTGAACGCAAT+AGG | + | chr8.3:68203812-68203831 | MS.gene08514:CDS | 35.0% |
| ! | TTTGTATACAAGGGCATGTT+TGG | + | chr8.3:68204012-68204031 | MS.gene08514:intron | 35.0% |
| AAGAGTTGAGTTTGTCCACA+AGG | + | chr8.3:68204906-68204925 | MS.gene08514:intron | 40.0% | |
| ACTCTACTCCTTCAATCTCA+AGG | + | chr8.3:68204646-68204665 | MS.gene08514:CDS | 40.0% | |
| ATGACCACCTTAGTGTTCTT+AGG | + | chr8.3:68203848-68203867 | MS.gene08514:CDS | 40.0% | |
| CACTAAGGTGGTCATTCATT+TGG | - | chr8.3:68203843-68203862 | None:intergenic | 40.0% | |
| CTCCTCCAATTATTGATGCT+TGG | - | chr8.3:68204301-68204320 | None:intergenic | 40.0% | |
| GACCAAGCATCAATAATTGG+AGG | + | chr8.3:68204296-68204315 | MS.gene08514:CDS | 40.0% | |
| GAGCTAATGCTATGAGTATG+AGG | + | chr8.3:68204938-68204957 | MS.gene08514:intron | 40.0% | |
| GGCAGCTCATAGATTAACTA+AGG | + | chr8.3:68205330-68205349 | MS.gene08514:intron | 40.0% | |
| GGTGACCAAGCATCAATAAT+TGG | + | chr8.3:68204293-68204312 | MS.gene08514:CDS | 40.0% | |
| TATGAGGAGACAAGCAAATG+AGG | + | chr8.3:68205309-68205328 | MS.gene08514:intron | 40.0% | |
| TGAGAGACCTAAGAACACTA+AGG | - | chr8.3:68203858-68203877 | None:intergenic | 40.0% | |
| TTTGTCCACAAGGTAAAAGC+TGG | + | chr8.3:68204916-68204935 | MS.gene08514:intron | 40.0% | |
| ! | CTTGCTATCTAAGCAAAACC+TGG | + | chr8.3:68204781-68204800 | MS.gene08514:intron | 40.0% |
| GAGACCTAAGAACACTAAGG+TGG | - | chr8.3:68203855-68203874 | None:intergenic | 45.0% | |
| TAAGCAAAACCTGGCTTCCT+TGG | + | chr8.3:68204790-68204809 | MS.gene08514:intron | 45.0% | |
| TCATCATCACCGCCTAGTTA+TGG | + | chr8.3:68204413-68204432 | MS.gene08514:CDS | 45.0% | |
| ! | TAGCTCCAGCTTTTACCTTG+TGG | - | chr8.3:68204924-68204943 | None:intergenic | 45.0% |
| !! | TTAAACTAAAATAATTTAAT+CGG | + | chr8.3:68205167-68205186 | MS.gene08514:intron | 5.0% |
| !!! | AAATTTACTAATTTTAAATA+TGG | - | chr8.3:68204872-68204891 | None:intergenic | 5.0% |
| !!! | TTATTTTATTTTTTTAAATG+TGG | + | chr8.3:68204715-68204734 | MS.gene08514:intron | 5.0% |
| ATGTTGGAACCAAGGAAGCC+AGG | - | chr8.3:68204802-68204821 | None:intergenic | 50.0% | |
| ! | AGGCGGTGATGATGATGATG+AGG | - | chr8.3:68204408-68204427 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 68203805 | 68205675 | 68203805 | ID=MS.gene08514 |
| chr8.3 | mRNA | 68203805 | 68205675 | 68203805 | ID=MS.gene08514.t1;Parent=MS.gene08514 |
| chr8.3 | exon | 68203805 | 68203900 | 68203805 | ID=MS.gene08514.t1.exon1;Parent=MS.gene08514.t1 |
| chr8.3 | CDS | 68203805 | 68203900 | 68203805 | ID=cds.MS.gene08514.t1;Parent=MS.gene08514.t1 |
| chr8.3 | exon | 68204293 | 68204667 | 68204293 | ID=MS.gene08514.t1.exon2;Parent=MS.gene08514.t1 |
| chr8.3 | CDS | 68204293 | 68204667 | 68204293 | ID=cds.MS.gene08514.t1;Parent=MS.gene08514.t1 |
| chr8.3 | exon | 68205589 | 68205675 | 68205589 | ID=MS.gene08514.t1.exon3;Parent=MS.gene08514.t1 |
| chr8.3 | CDS | 68205589 | 68205675 | 68205589 | ID=cds.MS.gene08514.t1;Parent=MS.gene08514.t1 |
| Gene Sequence |
| Protein sequence |
