AlfalfaGEDB | MS.gene92775

M. sativa cultivar XinJiangDaYe / MS.gene92775

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92775.t1	XP_003623646.1	99.4	171	1	0	1	171	1	171	7.20E-72	280

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92775.t1	Q7F0J0	64.5	166	59	0	4	169	2	167	2.1e-48	193.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92775.t1	G7KY76	99.4	171	1	0	1	171	1	171	5.2e-72	280.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene92775	0.809513	1.82E-50	-1.69E-46
MS.gene04918	MS.gene92775	0.818656	1.75E-52	-1.69E-46
MS.gene04919	MS.gene92775	0.823759	1.16E-53	-1.69E-46
MS.gene04920	MS.gene92775	0.844567	6.98E-59	-1.69E-46
MS.gene049254	MS.gene92775	0.844535	7.12E-59	-1.69E-46
MS.gene049283	MS.gene92775	0.842159	3.07E-58	-1.69E-46
MS.gene049499	MS.gene92775	0.83351	5.12E-56	-1.69E-46
MS.gene049652	MS.gene92775	0.822566	2.21E-53	-1.69E-46
MS.gene049711	MS.gene92775	0.80113	1.04E-48	-1.69E-46
MS.gene049983	MS.gene92775	0.810836	9.46E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000724	MS.gene92775	PPI
MS.gene000738	MS.gene92775	PPI
MS.gene001246	MS.gene92775	PPI
MS.gene003880	MS.gene92775	PPI
MS.gene004899	MS.gene92775	PPI
MS.gene008225	MS.gene92775	PPI
MS.gene009021	MS.gene92775	PPI
MS.gene011400	MS.gene92775	PPI
MS.gene013748	MS.gene92775	PPI
MS.gene015470	MS.gene92775	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92775.t1	MTR_7g074020	98.830	171	2	1	171	1	171	2.10e-123	344
MS.gene92775.t1	MTR_6g007613	92.308	169	13	3	171	2	170	7.84e-114	320
MS.gene92775.t1	MTR_7g074020	98.013	151	3	1	151	1	151	1.00e-105	299
MS.gene92775.t1	MTR_6g007613	92.617	149	11	3	151	2	150	5.32e-99	282
MS.gene92775.t1	MTR_5g088320	44.755	143	79	22	164	4	146	9.96e-39	129
MS.gene92775.t1	MTR_5g088320	46.970	66	35	29	94	84	149	3.42e-12	61.2
MS.gene92775.t1	MTR_6g025320	44.755	143	79	22	164	4	146	2.35e-38	128
MS.gene92775.t1	MTR_6g025320	46.970	66	35	29	94	84	149	3.60e-12	61.2
MS.gene92775.t1	MTR_1g076650	43.151	146	83	21	166	3	148	2.59e-38	128
MS.gene92775.t1	MTR_7g087610	44.056	143	80	22	164	4	146	6.47e-38	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92775.t1	AT3G50360	75.449	167	39	1	3	169	2	166	3.16e-82	240
MS.gene92775.t1	AT4G37010	63.871	155	55	1	16	169	16	170	1.98e-65	198
MS.gene92775.t1	AT4G37010	63.871	155	55	1	16	169	12	166	2.37e-65	197
MS.gene92775.t1	AT5G37780	44.755	143	79	0	22	164	4	146	3.26e-39	130
MS.gene92775.t1	AT5G37780	48.485	66	34	0	29	94	84	149	1.01e-12	62.8
MS.gene92775.t1	AT1G66410	44.755	143	79	0	22	164	4	146	3.26e-39	130
MS.gene92775.t1	AT1G66410	48.485	66	34	0	29	94	84	149	1.01e-12	62.8
MS.gene92775.t1	AT3G56800	44.755	143	79	0	22	164	4	146	1.45e-38	129
MS.gene92775.t1	AT3G56800	46.970	66	35	0	29	94	84	149	2.73e-12	61.6
MS.gene92775.t1	AT2G27030	44.755	143	79	0	22	164	4	146	1.45e-38	129

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Find 32 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATAGCAGATGTCGAC+AGG	0.463318	7.4:-30924038	MS.gene92775:CDS
AAGCGGATTGCAAAAGAGCT+AGG	0.569005	7.4:-30923784	MS.gene92775:CDS
AATGATAGCAGATGTCGACA+GGG	0.695960	7.4:-30924037	MS.gene92775:CDS
AGATTCAACAACAAACAAAG+AGG	0.630713	7.4:-30924841	MS.gene92775:CDS
AGGAGAAAGAGACACTAAAG+AGG	0.570607	7.4:-30923959	MS.gene92775:CDS
AGGAGCTTAATGTTGCTATG+AGG	0.614526	7.4:-30924636	MS.gene92775:intron
AGTGTCTCTTTCTCCTATTT+TGG	0.237506	7.4:+30923966	None:intergenic
ATAATATGCAGATGATCGAG+AGG	0.639575	7.4:-30921708	MS.gene92775:intron
ATAGCAGATGTCGACAGGGA+TGG	0.573080	7.4:-30924033	MS.gene92775:CDS
ATCATCATGATGAACTCCTC+TGG	0.458576	7.4:+30921680	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGACAGTTCTTGATCAA+GGG	+	chr7.4:30921768-30921787	None:intergenic	30.0%
ACATAATTTGAGCTATAGAG+AGG	-	chr7.4:30923365-30923384	MS.gene92775:intron	30.0%
AGATTCAACAACAAACAAAG+AGG	-	chr7.4:30921844-30921863	MS.gene92775:intron	30.0%
ATTATAAGTTCCAGGTGATA+TGG	+	chr7.4:30924385-30924404	None:intergenic	30.0%
ATTGTTGTAGCATTTAGCTA+TGG	-	chr7.4:30922452-30922471	MS.gene92775:intron	30.0%
ATTTAGAGATAGGGATTCAA+TGG	-	chr7.4:30922489-30922508	MS.gene92775:intron	30.0%
CATAATTTGAGCTATAGAGA+GGG	-	chr7.4:30923366-30923385	MS.gene92775:intron	30.0%
CGCTAAACTTATCATAGAAA+AGG	+	chr7.4:30924085-30924104	None:intergenic	30.0%
CTAAAAAGTTAGAACTAGCA+AGG	+	chr7.4:30923003-30923022	None:intergenic	30.0%
CTGACAATGTGTTTATAAGT+GGG	-	chr7.4:30924007-30924026	MS.gene92775:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	30921655	30925052	30921655	ID=MS.gene92775
chr7.4	mRNA	30921655	30925052	30921655	ID=MS.gene92775.t1;Parent=MS.gene92775
chr7.4	exon	30925050	30925052	30925050	ID=MS.gene92775.t1.exon1;Parent=MS.gene92775.t1
chr7.4	CDS	30925050	30925052	30925050	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30924767	30924893	30924767	ID=MS.gene92775.t1.exon2;Parent=MS.gene92775.t1
chr7.4	CDS	30924767	30924893	30924767	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30924637	30924673	30924637	ID=MS.gene92775.t1.exon3;Parent=MS.gene92775.t1
chr7.4	CDS	30924637	30924673	30924637	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30924520	30924547	30924520	ID=MS.gene92775.t1.exon4;Parent=MS.gene92775.t1
chr7.4	CDS	30924520	30924547	30924520	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30923918	30924070	30923918	ID=MS.gene92775.t1.exon5;Parent=MS.gene92775.t1
chr7.4	CDS	30923918	30924070	30923918	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30923728	30923830	30923728	ID=MS.gene92775.t1.exon6;Parent=MS.gene92775.t1
chr7.4	CDS	30923728	30923830	30923728	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1
chr7.4	exon	30921655	30921719	30921655	ID=MS.gene92775.t1.exon7;Parent=MS.gene92775.t1
chr7.4	CDS	30921655	30921719	30921655	ID=cds.MS.gene92775.t1;Parent=MS.gene92775.t1

Gene Sequence

>MS.gene92775

ATGGTACGATCTCTCTGCTGTTCTTATTTTTCAATCAAACTAACAGATCATGATCTTTAGTCATTATTATTAATTTTGCAAATTTTATCTTTAAACTATTAGAGTAGATTCCCTTGATCAAGAACTGTCTTTTGATTTGATGTGCAATTTTGTTATCAGTCATCTTCTATACTTAGAGGAGATTCCAGAAGATTCAACAACAAACAAAGAGGAAAACATCATTTGACGCAACAGAAGAGACAAGAGATTAAAGAAGCTTTTGAATTATTCGACACTGATGGCTCAGGTTTACACTTTACCATCAACAATAACCATGTAGTCAAAAATATTCTTGATCTCCTCTTTATACCATACTAATACTTTGTTTAATGATTTTTAGGTACTATTGATGCCAAGGAGCTTAATGTTGCTATGAGGTATTGTTGTTATTCACAAGGTTAAAATGTTTTTCATAATAATTGGGCATGTTGTTTTCATAACATACATCTTATTCTTATCTTTGTAGGGCCCTTGGATTTGAGATGACTGAAGAGGTACCCCCCTCTGCCCCTTTTTATAACCACTCGTTGCATATTATGTTGTCGCGGTAATTAATGTTTATGTTTGGGAAAGTAACAAGTACATCTTGTTATTTGATAATATCTAAGTACTTTCATTCAATTTTCATACAATTGAGCATAGTTTACAGATTTTAATTATTTCATCCATTGACCGTTGCCAAGGAAAATAATTCCTAGTCTTTTGTGTAAATATCACGAGCAATGAAGCCAATTCCCTTTCTCTGTGATACCTCTTTTATTGTTGTAGCATTTAGCTATGGTTGTTCTTATACTAATTTAGAGATAGGGATTCAATGGCTAATGAAATTTGATTGTAGAATAGTAATAGATTATGTACAATATTGTCAGGATTTTGTGATGTTATTCTTTGTTAAAGTTTTATATGCATTCTCTCTAATAGATCATCCATTGTGTCATTTCAGCAAATTGAGCAAATGATAGCAGATGTCGACAGGGATGGGAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGAGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATGTGAATATCAGATATCTTCTCTACTATACATCATTAGTATTGCTTCTTATTGATTCTCATTGTATTTTTGTGGTCACTGTATTGTAGGGTAAGATATCGGCATCGGATATCAAGCGGATTGCAAAAGAGCTAGGTCAAAATTTTACTGATAGAGAGATTCAGGAGATGGTTGATGAAGCAGACCAAAATAGTAAGTTTCCACAAACATATCCTTGCTAGTTCTAACTTTTTAGTAAAAATTTTACATCTCACATGGCGTATTTGTATATCATTCTACGGTGAGCTGGGTGGAGATATGTGTGTTTTAGGTTATGCTAACATAGTGTATAAGAAATAATAGTATCATTGGTTTGAACTTTAAATCTGTGATTTTCTACATTGAAAGTATAGTGCGCATTGGGTCATGTTTTAGTACTCACGTAGTTTCGGACACTTATAATTTTGACATAAGAAAAAATAAATGATAAGACATTCATGTAAACATCGAAGGTATTACAACTAATGATAGTTTAATCCTGACAATAAAAATGAATCATATTAGATAAAAAGTAAACATAATGATTGGAATACTATGAACATAATTTGAGCTATAGAGAGGGAATCTGATATATGGTTGCATTGCATGGAGTATATTTTAATTAGAGTACCTTAAGGTAATATTTGCTGGTGGACTTAGATCTCCCAAAATGTCCGAAAGTAAGTTGTTAGGAACATTATTGCAATGATAAAACAAACACAGAATTTGCTTTTGAAGCAAAATAATCAAAATCCACTCCATCTTGCAAGTTACAGTAGTAAGTCCATTGTTAAAATATATTAGTTTGAAGCAAAAAATATATATATATAATCCCTAAGGTTGATGTAGTAACTCATATTCAGAAGTTGCCTTTTAAGTTGTTGAGATATTGAAAAGTTGTGACTGTATAGTTTTAACTTCACTATTTATTGTATTGATTGTATTGATTAATCTTCTTTATTAATTAGGGGTTAACTAGGAGACTCCTACCCATATAAATGTACATTCTCCCCACATAATATGATATAGTAAAACATATTTTCAGTCTTAAGATGGTATCAGAGCCTCTCCAAGATCCATTGGGCCACCTGCTATCAGGTTTCCGCTATCAGGCCACCCACCATTTATGTCCACGAACCAAGCCTAATAGTGCTGGTCGTGAGGGGGTGTGTTAAGAGTCCCACTTCGGATAGGTGATGGCCTGACAATGTGTTTATAAGTGGGGGCAATCCTCACCTCACAAGCCGCTTTTGTGGGGTTGTGTTAGGCCCAACCACCTTTTCTATGATAAGTTTAGCGTTCATAACCCACTTCGGTTGGCCTGATGGTGTTGGCTTGGGATCCTAGAGTGTGCTCCTCCTCTAGGTCACATGTTCGATTCTCCCCGGTGCCAATTTGGGTGGGTTAGTTTAGTTTATAAAAAAAAAAGTTTAGCGTTCCTGCTGAAGGATATGTTCTGCCATATGGTAGCGGGGAAGGACTCTGCAGTAAATTGTTCACTACTTCCCCATAAAAAACAAAGTTAAAAGGCTGCAAACAGAGCTATAATAGATTAAAGTATAGAATAGGTTCACAGCCATATCACCTGGAACTTATAATTTTTGTGTACAATACACACGATGCGTAGGACTTGGACATGCGATTTAGCTGGAAATCAAGGTAGAATAAACAATAGGGTGCTATTTGGTCGGTCAAAGGTCAGTTACAATGGCAATTTGGGAGTTAGAGGTTAATTAGCAGGTTCTGCACATTTGTATAGGCATTTTGGATTAGTAGGCAACAACTGAGTCTCTTAGTTGTGACTTGTGAGGGGAAACTGGTTTATTTGCCTTATTTTCTCTCCATTGCAGGAATAACAGTGTTCTTTCTCTCTTTCCCCCATACACTTTCCCTGCTTGTACTACTTGTTATGTCCTGTGGTTTTTCTGGTTCCTATGATTACAATAGGTTCCTGAATTGTATATCCCATAAAACATTTATTGAAAAATGAGTAGTTTGTCAGTTTGAAACTAAACGGGGGGTTTGCATTGGTTTCATAAAAATTCTTAAGGGGAGTTCAACGTGTTATAGTTATACCATACTCTTTTTGTGTGTTGAATTTTTTCTTGCGTTAGGATTGGTAATATCTTCCCATGTTTGTGAGATATTATTTAGACAACATTTGTTGTTTTATAATATGCAGATGATCGAGAGGTTGATCCAGAGGAGTTCATCATGATGATGAACACAACAGGCTACCGTCACTAG

Protein sequence

>MS.gene92775.t1

MSSSILRGDSRRFNNKQRGKHHLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIEQMIADVDRDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNGKISASDIKRIAKELGQNFTDREIQEMVDEADQNNDREVDPEEFIMMMNTTGYRH