Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78773.t1 | XP_013453884.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 9.10E-140 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78773.t1 | Q8W4Y5 | 71.8 | 252 | 69 | 1 | 1 | 252 | 46 | 295 | 2.0e-103 | 376.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78773.t1 | A0A072UQ04 | 99.6 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 6.6e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene78773 | 0.857456 | 1.61E-62 | -1.69E-46 |
| MS.gene049861 | MS.gene78773 | 0.827927 | 1.19E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene78773 | 0.805192 | 1.50E-49 | -1.69E-46 |
| MS.gene04998 | MS.gene78773 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene050271 | MS.gene78773 | 0.828354 | 9.42E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene78773 | 0.822248 | 2.62E-53 | -1.69E-46 |
| MS.gene051343 | MS.gene78773 | 0.814296 | 1.66E-51 | -1.69E-46 |
| MS.gene051597 | MS.gene78773 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene78773 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene78773 | 0.824895 | 6.30E-54 | -1.69E-46 |
| MS.gene051832 | MS.gene78773 | 0.825679 | 4.11E-54 | -1.69E-46 |
| MS.gene051902 | MS.gene78773 | 0.830132 | 3.49E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene78773 | 0.827548 | 1.47E-54 | -1.69E-46 |
| MS.gene052242 | MS.gene78773 | -0.818986 | 1.47E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene78773 | 0.802147 | 6.44E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene78773 | -0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene78773 | 0.801168 | 1.02E-48 | -1.69E-46 |
| MS.gene053094 | MS.gene78773 | 0.821309 | 4.32E-53 | -1.69E-46 |
| MS.gene053189 | MS.gene78773 | 0.809241 | 2.09E-50 | -1.69E-46 |
| MS.gene053295 | MS.gene78773 | 0.812423 | 4.27E-51 | -1.69E-46 |
| MS.gene053298 | MS.gene78773 | 0.846785 | 1.75E-59 | -1.69E-46 |
| MS.gene053340 | MS.gene78773 | 0.801624 | 8.25E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene78773 | 0.801121 | 1.05E-48 | -1.69E-46 |
| MS.gene053963 | MS.gene78773 | 0.924162 | 1.02E-89 | -1.69E-46 |
| MS.gene054222 | MS.gene78773 | 0.864858 | 8.99E-65 | -1.69E-46 |
| MS.gene054479 | MS.gene78773 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene78773 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene78773 | 0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene054892 | MS.gene78773 | 0.84374 | 1.16E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene78773 | 0.844152 | 9.02E-59 | -1.69E-46 |
| MS.gene054957 | MS.gene78773 | 0.8293 | 5.56E-55 | -1.69E-46 |
| MS.gene055147 | MS.gene78773 | 0.822245 | 2.63E-53 | -1.69E-46 |
| MS.gene055148 | MS.gene78773 | 0.810234 | 1.28E-50 | -1.69E-46 |
| MS.gene055149 | MS.gene78773 | 0.817314 | 3.52E-52 | -1.69E-46 |
| MS.gene055226 | MS.gene78773 | 0.816238 | 6.13E-52 | -1.69E-46 |
| MS.gene056315 | MS.gene78773 | 0.80258 | 5.24E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene78773 | 0.830471 | 2.88E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene78773 | 0.818476 | 1.92E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene78773 | 0.803589 | 3.24E-49 | -1.69E-46 |
| MS.gene056975 | MS.gene78773 | 0.817167 | 3.79E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene78773 | 0.854427 | 1.24E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene78773 | 0.812812 | 3.51E-51 | -1.69E-46 |
| MS.gene057155 | MS.gene78773 | 0.819299 | 1.25E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene78773 | 0.827285 | 1.70E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene78773 | 0.864588 | 1.09E-64 | -1.69E-46 |
| MS.gene058074 | MS.gene78773 | 0.824854 | 6.44E-54 | -1.69E-46 |
| MS.gene058159 | MS.gene78773 | 0.815788 | 7.73E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene78773 | 0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene78773 | 0.825807 | 3.83E-54 | -1.69E-46 |
| MS.gene05878 | MS.gene78773 | 0.808576 | 2.89E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene78773 | 0.842287 | 2.84E-58 | -1.69E-46 |
| MS.gene05985 | MS.gene78773 | -0.839494 | 1.53E-57 | -1.69E-46 |
| MS.gene060012 | MS.gene78773 | 0.827767 | 1.30E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene78773 | 0.819627 | 1.05E-52 | -1.69E-46 |
| MS.gene06018 | MS.gene78773 | 0.836007 | 1.20E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene78773 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene060412 | MS.gene78773 | 0.819194 | 1.32E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene78773 | 0.834671 | 2.62E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene78773 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene78773 | 0.821355 | 4.22E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78773.t1 | MTR_5g049230 | 99.603 | 252 | 1 | 0 | 1 | 252 | 47 | 298 | 0.0 | 509 |
| MS.gene78773.t1 | MTR_5g049240 | 86.508 | 252 | 34 | 0 | 1 | 252 | 2 | 253 | 1.04e-160 | 449 |
| MS.gene78773.t1 | MTR_5g049240 | 86.508 | 252 | 34 | 0 | 1 | 252 | 47 | 298 | 1.47e-159 | 447 |
| MS.gene78773.t1 | MTR_8g069850 | 76.984 | 252 | 58 | 0 | 1 | 252 | 47 | 298 | 3.06e-147 | 414 |
| MS.gene78773.t1 | MTR_4g086150 | 44.017 | 234 | 124 | 2 | 19 | 252 | 61 | 287 | 2.54e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78773.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 1.03e-130 | 372 |
| MS.gene78773.t1 | AT1G13580 | 69.841 | 252 | 76 | 0 | 1 | 252 | 47 | 298 | 1.03e-130 | 372 |
| MS.gene78773.t1 | AT3G25540 | 63.922 | 255 | 88 | 2 | 1 | 252 | 47 | 300 | 2.49e-118 | 340 |
| MS.gene78773.t1 | AT3G25540 | 63.922 | 255 | 88 | 2 | 1 | 252 | 47 | 300 | 2.49e-118 | 340 |
| MS.gene78773.t1 | AT1G26200 | 56.870 | 262 | 97 | 3 | 1 | 252 | 46 | 301 | 3.54e-104 | 305 |
| MS.gene78773.t1 | AT1G26200 | 54.444 | 270 | 102 | 3 | 1 | 252 | 46 | 312 | 2.67e-101 | 298 |
| MS.gene78773.t1 | AT1G13580 | 71.354 | 192 | 55 | 0 | 1 | 192 | 47 | 238 | 1.34e-99 | 290 |
| MS.gene78773.t1 | AT3G25540 | 64.615 | 195 | 66 | 1 | 1 | 192 | 47 | 241 | 2.03e-90 | 267 |
| MS.gene78773.t1 | AT1G26200 | 60.309 | 194 | 74 | 1 | 1 | 194 | 46 | 236 | 6.60e-82 | 245 |
| MS.gene78773.t1 | AT3G19260 | 45.528 | 246 | 127 | 2 | 7 | 252 | 51 | 289 | 9.46e-73 | 224 |
Find 37 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGATTAACAAATTTA+AGG | 0.125028 | 5.1:+40799568 | MS.gene78773:CDS |
| CCATACTTGCTTTAATATTC+TGG | 0.136312 | 5.1:+40799878 | MS.gene78773:CDS |
| TGCTTGTTCTTAACATTTAT+TGG | 0.179322 | 5.1:+40801044 | MS.gene78773:CDS |
| TGATGCTACTGATGTGTTTC+TGG | 0.182167 | 5.1:+40800189 | MS.gene78773:CDS |
| GTGTCGTTTACTACCCATTT+TGG | 0.238501 | 5.1:+40800299 | MS.gene78773:CDS |
| CCAGAATATTAAAGCAAGTA+TGG | 0.250823 | 5.1:-40799878 | None:intergenic |
| ACTGGTTGCCACCTTGAAAT+TGG | 0.253838 | 5.1:+40800961 | MS.gene78773:CDS |
| ACACTCAGGTTTGTTCGAAT+TGG | 0.325304 | 5.1:+40800145 | MS.gene78773:intron |
| GAAACAAGACGCTCTGACTT+TGG | 0.337924 | 5.1:+40799901 | MS.gene78773:CDS |
| GTACTTCGAAGAACCCAAAA+TGG | 0.344972 | 5.1:-40800313 | None:intergenic |
| CTGATTCTTCGGATGCTTGT+TGG | 0.351437 | 5.1:+40801073 | MS.gene78773:CDS |
| CCTTGAAATTGGAAAATCAT+TGG | 0.362965 | 5.1:+40800972 | MS.gene78773:CDS |
| AAACAAGACGCTCTGACTTT+GGG | 0.369876 | 5.1:+40799902 | MS.gene78773:CDS |
| CATACTTGCTTTAATATTCT+GGG | 0.380439 | 5.1:+40799879 | MS.gene78773:CDS |
| TTGGAAAATCATTGGGTGAA+TGG | 0.396407 | 5.1:+40800980 | MS.gene78773:CDS |
| ACTGATGTGTTTCTGGAGAT+AGG | 0.414778 | 5.1:+40800196 | MS.gene78773:CDS |
| CTTGAAATTGGAAAATCATT+GGG | 0.421846 | 5.1:+40800973 | MS.gene78773:CDS |
| ATTGGTGGGTGCTGATTCTT+CGG | 0.444061 | 5.1:+40801062 | MS.gene78773:CDS |
| TCTGGCCATCTCTGATTCCC+TGG | 0.444917 | 5.1:-40799695 | None:intergenic |
| TCTTTGTTGCAGCTATGAAC+TGG | 0.456363 | 5.1:+40800943 | MS.gene78773:intron |
| CTGATGTGTTTCTGGAGATA+GGG | 0.490323 | 5.1:+40800197 | MS.gene78773:CDS |
| CTGTGACATATGACGAGCCT+TGG | 0.495300 | 5.1:+40799642 | MS.gene78773:CDS |
| TTTGGGTTCTTCGAAGTACA+AGG | 0.496763 | 5.1:+40800317 | MS.gene78773:CDS |
| TTGTTCTTAACATTTATTGG+TGG | 0.510641 | 5.1:+40801047 | MS.gene78773:CDS |
| GTTAGTGAAGATATACGATC+TGG | 0.513493 | 5.1:+40801118 | MS.gene78773:CDS |
| GTAGTAAACGACACGTAGTA+TGG | 0.517462 | 5.1:-40800290 | None:intergenic |
| GGGCTGTATATGTATGGTGC+TGG | 0.528738 | 5.1:+40799841 | MS.gene78773:CDS |
| TGTTCTTAACATTTATTGGT+GGG | 0.530572 | 5.1:+40801048 | MS.gene78773:CDS |
| TTGAAAGGGCTGTATATGTA+TGG | 0.545225 | 5.1:+40799835 | MS.gene78773:CDS |
| TACTTCGAAGAACCCAAAAT+GGG | 0.551224 | 5.1:-40800312 | None:intergenic |
| TTGGGCCAGGGAATCAGAGA+TGG | 0.559128 | 5.1:+40799690 | MS.gene78773:CDS |
| GTTGGTCAAATTCGAGCAAG+AGG | 0.587622 | 5.1:+40801091 | MS.gene78773:CDS |
| TTGGTCAAATTCGAGCAAGA+GGG | 0.591303 | 5.1:+40801092 | MS.gene78773:CDS |
| ATGTGTAGAAATTGGCCAGA+CGG | 0.612314 | 5.1:+40799492 | None:intergenic |
| AAATGTAGGATAACACAATG+AGG | 0.666787 | 5.1:-40799957 | None:intergenic |
| GGGAAAATGTCCAAATACAG+CGG | 0.695232 | 5.1:+40800217 | MS.gene78773:CDS |
| ACAAATTTAAGGAATCAGCG+TGG | 0.724000 | 5.1:+40799579 | MS.gene78773:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAAAATTAAGTAAAAT+AGG | - | chr5.1:40800125-40800144 | None:intergenic | 10.0% |
| !! | AAAGAAGATTAACAAATTTA+AGG | + | chr5.1:40799568-40799587 | MS.gene78773:CDS | 15.0% |
| !! | AATAAATTACTCAGTTTATA+CGG | + | chr5.1:40800885-40800904 | MS.gene78773:intron | 15.0% |
| !! | ATATCCTTTAAATTTACATT+TGG | - | chr5.1:40800454-40800473 | None:intergenic | 15.0% |
| !! | TATCCTTTAAATTTACATTT+GGG | - | chr5.1:40800453-40800472 | None:intergenic | 15.0% |
| !!! | TACTGATACAAAATATTTTT+GGG | + | chr5.1:40799667-40799686 | MS.gene78773:CDS | 15.0% |
| !!! | TTACTGATACAAAATATTTT+TGG | + | chr5.1:40799666-40799685 | MS.gene78773:CDS | 15.0% |
| !! | AATCCCAAATGTAAATTTAA+AGG | + | chr5.1:40800447-40800466 | MS.gene78773:intron | 20.0% |
| !! | TATATGAGTAAAGTATAAAG+TGG | + | chr5.1:40800752-40800771 | MS.gene78773:intron | 20.0% |
| !! | TCTTGTAAAAAAGTAATCAT+TGG | + | chr5.1:40800497-40800516 | MS.gene78773:intron | 20.0% |
| !! | TTCAATCTGAAAATTGTAAA+TGG | - | chr5.1:40799814-40799833 | None:intergenic | 20.0% |
| !! | TTTATACTTTACTCATATAG+AGG | - | chr5.1:40800751-40800770 | None:intergenic | 20.0% |
| !! | TTTGTTAAAATTTCAACTCT+TGG | - | chr5.1:40800783-40800802 | None:intergenic | 20.0% |
| !!! | ATACAAAATATTTTTGGGTT+GGG | + | chr5.1:40799672-40799691 | MS.gene78773:CDS | 20.0% |
| !!! | ATTTTCAGATTGAAATTGAA+AGG | + | chr5.1:40799820-40799839 | MS.gene78773:intron | 20.0% |
| !!! | GAAATGTGTTTATTTTCTAT+CGG | + | chr5.1:40799601-40799620 | MS.gene78773:CDS | 20.0% |
| !!! | TTTTCAGATTGAAATTGAAA+GGG | + | chr5.1:40799821-40799840 | MS.gene78773:intron | 20.0% |
| !!! | TTTTTTTAACTTCCACTAAA+TGG | - | chr5.1:40800429-40800448 | None:intergenic | 20.0% |
| ! | AAAATAGGAAATTGAACTAG+TGG | - | chr5.1:40800110-40800129 | None:intergenic | 25.0% |
| ! | AACTGACAAATAACAACAAT+TGG | - | chr5.1:40799754-40799773 | None:intergenic | 25.0% |
| ! | ACTGACAAATAACAACAATT+GGG | - | chr5.1:40799753-40799772 | None:intergenic | 25.0% |
| ! | CATACTTGCTTTAATATTCT+GGG | + | chr5.1:40799879-40799898 | MS.gene78773:CDS | 25.0% |
| ! | CTAGGTGAATTATATAATGT+CGG | + | chr5.1:40800397-40800416 | MS.gene78773:intron | 25.0% |
| ! | CTTGAAATTGGAAAATCATT+GGG | + | chr5.1:40800973-40800992 | MS.gene78773:CDS | 25.0% |
| ! | CTTTAGATTTAGGAAATTGT+CGG | + | chr5.1:40800007-40800026 | MS.gene78773:intron | 25.0% |
| ! | TGCTTGTTCTTAACATTTAT+TGG | + | chr5.1:40801044-40801063 | MS.gene78773:CDS | 25.0% |
| ! | TGTTCTTAACATTTATTGGT+GGG | + | chr5.1:40801048-40801067 | MS.gene78773:CDS | 25.0% |
| ! | TTGTTCTTAACATTTATTGG+TGG | + | chr5.1:40801047-40801066 | MS.gene78773:CDS | 25.0% |
| !! | TATTTTGTATCAGTAAACCA+AGG | - | chr5.1:40799662-40799681 | None:intergenic | 25.0% |
| !! | TCTTACTTAATCTTTTGATC+TGG | - | chr5.1:40799716-40799735 | None:intergenic | 25.0% |
| !! | TTGTGTTATCCTACATTTTT+AGG | + | chr5.1:40799962-40799981 | MS.gene78773:CDS | 25.0% |
| !!! | CTTAATTTTTCAATACACTC+AGG | + | chr5.1:40800131-40800150 | MS.gene78773:intron | 25.0% |
| !!! | GATACAAAATATTTTTGGGT+TGG | + | chr5.1:40799671-40799690 | MS.gene78773:CDS | 25.0% |
| AAATGTAGGATAACACAATG+AGG | - | chr5.1:40799960-40799979 | None:intergenic | 30.0% | |
| AATCATTGGTGAATGATGAT+AGG | + | chr5.1:40800511-40800530 | MS.gene78773:intron | 30.0% | |
| CCAGAATATTAAAGCAAGTA+TGG | - | chr5.1:40799881-40799900 | None:intergenic | 30.0% | |
| CCATACTTGCTTTAATATTC+TGG | + | chr5.1:40799878-40799897 | MS.gene78773:CDS | 30.0% | |
| CCTTGAAATTGGAAAATCAT+TGG | + | chr5.1:40800972-40800991 | MS.gene78773:CDS | 30.0% | |
| CGACAATTTCCTAAATCTAA+AGG | - | chr5.1:40800009-40800028 | None:intergenic | 30.0% | |
| CTAAACTCTTAACAAAACAG+AGG | + | chr5.1:40800554-40800573 | MS.gene78773:intron | 30.0% | |
| GTCTAAATGCCTTTAGATTT+AGG | + | chr5.1:40799997-40800016 | MS.gene78773:intron | 30.0% | |
| ! | ATGATTTTCCAATTTCAAGG+TGG | - | chr5.1:40800972-40800991 | None:intergenic | 30.0% |
| ! | CCAATGATTTTCCAATTTCA+AGG | - | chr5.1:40800975-40800994 | None:intergenic | 30.0% |
| !! | CTCTGTTTTGTTAAGAGTTT+AGG | - | chr5.1:40800556-40800575 | None:intergenic | 30.0% |
| !!! | ATATGTTAGCTTTTCAACAG+TGG | + | chr5.1:40800703-40800722 | MS.gene78773:intron | 30.0% |
| !!! | GGCTGTGCAATTTAATTTTT+TGG | + | chr5.1:40800575-40800594 | MS.gene78773:intron | 30.0% |
| !!! | TTGGTTTTAAGAGCACATTT+TGG | + | chr5.1:40800044-40800063 | MS.gene78773:intron | 30.0% |
| ACAAATTTAAGGAATCAGCG+TGG | + | chr5.1:40799579-40799598 | MS.gene78773:CDS | 35.0% | |
| ACCTAGATTAGCAACTACAA+TGG | - | chr5.1:40800383-40800402 | None:intergenic | 35.0% | |
| CAGTTGTTTAATCCATCATG+AGG | - | chr5.1:40800649-40800668 | None:intergenic | 35.0% | |
| GAAATCGCACCTAAAAATGT+AGG | - | chr5.1:40799974-40799993 | None:intergenic | 35.0% | |
| GGTGAATTATATAATGTCGG+CGG | + | chr5.1:40800400-40800419 | MS.gene78773:intron | 35.0% | |
| TACAAAAAGTGACCTCATGA+TGG | + | chr5.1:40800634-40800653 | MS.gene78773:intron | 35.0% | |
| TACTTCGAAGAACCCAAAAT+GGG | - | chr5.1:40800315-40800334 | None:intergenic | 35.0% | |
| TTGAAAGGGCTGTATATGTA+TGG | + | chr5.1:40799835-40799854 | MS.gene78773:CDS | 35.0% | |
| TTGGAAAATCATTGGGTGAA+TGG | + | chr5.1:40800980-40800999 | MS.gene78773:CDS | 35.0% | |
| TTGGTGAATGATGATAGGAT+AGG | + | chr5.1:40800516-40800535 | MS.gene78773:intron | 35.0% | |
| !! | AGACGGTTCATTTTTGGAAA+GGG | + | chr5.1:40799509-40799528 | MS.gene78773:CDS | 35.0% |
| !! | GCAACTGAGGGAATTTTAAT+AGG | - | chr5.1:40800361-40800380 | None:intergenic | 35.0% |
| !! | TGTCGTTTACTACCCATTTT+GGG | + | chr5.1:40800300-40800319 | MS.gene78773:CDS | 35.0% |
| AAACAAGACGCTCTGACTTT+GGG | + | chr5.1:40799902-40799921 | MS.gene78773:CDS | 40.0% | |
| CTTTCCAAAAATGAACCGTC+TGG | - | chr5.1:40799510-40799529 | None:intergenic | 40.0% | |
| GCCATTGTAGTTGCTAATCT+AGG | + | chr5.1:40800379-40800398 | MS.gene78773:intron | 40.0% | |
| GGGAAAATGTCCAAATACAG+CGG | + | chr5.1:40800217-40800236 | MS.gene78773:CDS | 40.0% | |
| GTACTTCGAAGAACCCAAAA+TGG | - | chr5.1:40800316-40800335 | None:intergenic | 40.0% | |
| GTAGTAAACGACACGTAGTA+TGG | - | chr5.1:40800293-40800312 | None:intergenic | 40.0% | |
| TCTTTGTTGCAGCTATGAAC+TGG | + | chr5.1:40800943-40800962 | MS.gene78773:intron | 40.0% | |
| TGATGCTACTGATGTGTTTC+TGG | + | chr5.1:40800189-40800208 | MS.gene78773:CDS | 40.0% | |
| TTGGTCAAATTCGAGCAAGA+GGG | + | chr5.1:40801092-40801111 | MS.gene78773:CDS | 40.0% | |
| ! | ACACTCAGGTTTGTTCGAAT+TGG | + | chr5.1:40800145-40800164 | MS.gene78773:intron | 40.0% |
| ! | TTTGGGTTCTTCGAAGTACA+AGG | + | chr5.1:40800317-40800336 | MS.gene78773:CDS | 40.0% |
| !! | ACTGATGTGTTTCTGGAGAT+AGG | + | chr5.1:40800196-40800215 | MS.gene78773:CDS | 40.0% |
| !! | CAGACGGTTCATTTTTGGAA+AGG | + | chr5.1:40799508-40799527 | MS.gene78773:CDS | 40.0% |
| !! | CTGATGTGTTTCTGGAGATA+GGG | + | chr5.1:40800197-40800216 | MS.gene78773:CDS | 40.0% |
| !! | TTTTTCAGCACCGCTGTATT+TGG | - | chr5.1:40800230-40800249 | None:intergenic | 40.0% |
| !!! | AAATATTTTTGGGTTGGGCC+AGG | + | chr5.1:40799677-40799696 | MS.gene78773:CDS | 40.0% |
| !!! | AATATTTTTGGGTTGGGCCA+GGG | + | chr5.1:40799678-40799697 | MS.gene78773:CDS | 40.0% |
| !!! | GTGTCGTTTACTACCCATTT+TGG | + | chr5.1:40800299-40800318 | MS.gene78773:CDS | 40.0% |
| ACTGGTTGCCACCTTGAAAT+TGG | + | chr5.1:40800961-40800980 | MS.gene78773:CDS | 45.0% | |
| AGCAACTACAATGGCAACTG+AGG | - | chr5.1:40800374-40800393 | None:intergenic | 45.0% | |
| CTGATTCTTCGGATGCTTGT+TGG | + | chr5.1:40801073-40801092 | MS.gene78773:CDS | 45.0% | |
| GAAACAAGACGCTCTGACTT+TGG | + | chr5.1:40799901-40799920 | MS.gene78773:CDS | 45.0% | |
| GCAACTACAATGGCAACTGA+GGG | - | chr5.1:40800373-40800392 | None:intergenic | 45.0% | |
| GTTGGTCAAATTCGAGCAAG+AGG | + | chr5.1:40801091-40801110 | MS.gene78773:CDS | 45.0% | |
| ! | GGAAATTGTCGGTGTCTCTA+CGG | + | chr5.1:40800018-40800037 | MS.gene78773:intron | 45.0% |
| ! | TTGGCCAGACGGTTCATTTT+TGG | + | chr5.1:40799503-40799522 | MS.gene78773:CDS | 45.0% |
| !! | ATTGGTGGGTGCTGATTCTT+CGG | + | chr5.1:40801062-40801081 | MS.gene78773:CDS | 45.0% |
| CTGTGACATATGACGAGCCT+TGG | + | chr5.1:40799642-40799661 | MS.gene78773:CDS | 50.0% | |
| GGGCTGTATATGTATGGTGC+TGG | + | chr5.1:40799841-40799860 | MS.gene78773:CDS | 50.0% | |
| TGTCGGCGGTAACCATTTAG+TGG | + | chr5.1:40800414-40800433 | MS.gene78773:intron | 50.0% | |
| ! | GTCGGTGTCTCTACGGAAAT+TGG | + | chr5.1:40800025-40800044 | MS.gene78773:intron | 50.0% |
| TCTGGCCATCTCTGATTCCC+TGG | - | chr5.1:40799698-40799717 | None:intergenic | 55.0% | |
| TTGGGCCAGGGAATCAGAGA+TGG | + | chr5.1:40799690-40799709 | MS.gene78773:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 40799500 | 40801139 | 40799500 | ID=MS.gene78773 |
| chr5.1 | mRNA | 40799500 | 40801139 | 40799500 | ID=MS.gene78773.t1;Parent=MS.gene78773 |
| chr5.1 | exon | 40799500 | 40799729 | 40799500 | ID=MS.gene78773.t1.exon1;Parent=MS.gene78773.t1 |
| chr5.1 | CDS | 40799500 | 40799729 | 40799500 | ID=cds.MS.gene78773.t1;Parent=MS.gene78773.t1 |
| chr5.1 | exon | 40799828 | 40799983 | 40799828 | ID=MS.gene78773.t1.exon2;Parent=MS.gene78773.t1 |
| chr5.1 | CDS | 40799828 | 40799983 | 40799828 | ID=cds.MS.gene78773.t1;Parent=MS.gene78773.t1 |
| chr5.1 | exon | 40800153 | 40800338 | 40800153 | ID=MS.gene78773.t1.exon3;Parent=MS.gene78773.t1 |
| chr5.1 | CDS | 40800153 | 40800338 | 40800153 | ID=cds.MS.gene78773.t1;Parent=MS.gene78773.t1 |
| chr5.1 | exon | 40800955 | 40801139 | 40800955 | ID=MS.gene78773.t1.exon4;Parent=MS.gene78773.t1 |
| chr5.1 | CDS | 40800955 | 40801139 | 40800955 | ID=cds.MS.gene78773.t1;Parent=MS.gene78773.t1 |
| Gene Sequence |
| Protein sequence |
